Citrus Sinensis ID: 019499

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEENS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mgtgeentsaktaktasstqeipttpsyadwsssmqafygagatpppffastvasptphpylwgsqhplmppygtpvpyqaiyppggvyahpsmattptaaptntepegkgpeakdrasakkskgtpggkagEIVKatsgsgndgvsqsaesgsdgssdasdengnQQEFARAntenntaeavpgsvpgkpvvsmpatnlnigmdlwntspaaagaakmrtnpsgaspavapagimpdqwIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTsennsikedlsrlcgpeavanleqsnptqscgeeens
Flexible Loop (DISEMBL)
mgtgeentsaktaktasstqeipTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAaptntepegkgpeakdrasakkskgtpggkageivkatsgsgndgvSQSAESGSDGSSDASDENGNQQEFARANtenntaeavpgsvpgkpvVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDERELKrqkrkqsnresarrsrlrkqaecEELQARvetlsnenrnLRDELQRLSEECEKLtsennsikedlSRLCGPEAVAnleqsnptqscgeeens
Low Complexity Region (SEG)
MGTGEENtsaktaktasstQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMattptaaptntepeGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQsaesgsdgssdasdengnQQEFARantenntaeavpgsvpgkpvvsmpATNLNIGMDLWNTSPAAAGAAKMRTNpsgaspavapagIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEENS
Disordered region (IsUnstruct)
************************************AFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYA*************************************************************************************************************LNIGMDLW*************************************************************************************************************************************
Disordered Region (DISOPRED)
******************************WSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPP****************************************************************************************************************************************************************************************ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE*****************************
Disordered Region (DISEMBL)
************************TPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATT*********************************AGEIVKATS******************************FARANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDER***************************ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL***************
Disordered Region (DISPRO)
***********************TTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAA********************************************************************************************SM**********************************************************************RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSRLCGPEAVANLEQSNPTQSCGEEENS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
P42774	315	G-box-binding factor 1 OS	yes	no	0.891	0.961	0.575	4e-95
Q99091	296	Light-inducible protein C	N/A	no	0.826	0.949	0.429	4e-55
Q99089	411	Common plant regulatory f	N/A	no	0.779	0.644	0.372	3e-40
P23922	349	Transcription factor HBP-	N/A	no	0.838	0.816	0.400	2e-32
P42776	382	G-box-binding factor 3 OS	no	no	0.788	0.701	0.361	4e-32
P42775	360	G-box-binding factor 2 OS	no	no	0.864	0.816	0.349	1e-27
Q99142	265	Transcriptional activator	N/A	no	0.647	0.830	0.344	1e-23
P25032	354	DNA-binding protein EMBP-	N/A	no	0.335	0.322	0.450	3e-19
O35451	699	Cyclic AMP-dependent tran	yes	no	0.297	0.144	0.336	5e-06
Q54Y73	834	Probable basic-leucine zi	yes	no	0.188	0.076	0.359	6e-06

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score =  348 bits (892), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 202/351 (57%), Positives = 235/351 (66%), Gaps = 48/351 (13%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGT E+    KT K  SS QE+P TP Y DW +SMQA+YG G TP PFF S V SP+PHP
Sbjct: 1   MGTSEDKMPFKTTKPTSSAQEVPPTP-YPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHP 59

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           Y+WG+QH +MPPYGTPVPY A+YPPG VYAHPSM   P + PTN EP      AKD+AS 
Sbjct: 60  YMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSMPMPPNSGPTNKEP------AKDQASG 113

Query: 121 KKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQE----------- 169
           KKSKG    KA    KA SGSGNDG S S ES + GSSD +DEN NQQE           
Sbjct: 114 KKSKGNSKKKAEGGDKALSGSGNDGASHSDESVTAGSSDENDENANQQEQGSIRKPSFGQ 173

Query: 170 -FARANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASP 228
             A A++++ T E + GSVP KPV   P TNLNIGMDLW++                   
Sbjct: 174 MLADASSQSTTGE-IQGSVPMKPVA--PGTNLNIGMDLWSSQ------------------ 212

Query: 229 AVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNL 288
               AG+     ++DERELKRQKRKQSNRESARRSRLRKQAECE+LQ RVE+LSNEN++L
Sbjct: 213 ----AGVP----VKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSL 264

Query: 289 RDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEEN 339
           RDELQRLS EC+KL SENNSI+++L R+ G EAVANLEQ+      GE  N
Sbjct: 265 RDELQRLSSECDKLKSENNSIQDELQRVLGAEAVANLEQNAAGSKDGEGTN 315

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Arabidopsis thaliana (taxid: 3702)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score =  215 bits (547), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 191/340 (56%), Gaps = 59/340 (17%)

Query: 1   MGTGEENTSAKTAKTASSTQEIP-TTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPH 59
           M  GEE T  K  K ASS +E P TT  + D  SSMQA Y  GA P  F+ASTV SP+PH
Sbjct: 1   MSDGEEGTPMKHPKPASSVEEAPITTTPFPDLLSSMQA-YYGGAAPAAFYASTVGSPSPH 59

Query: 60  PYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRAS 119
           PY+W +QH  + PYG P+ Y A++ PGG++ HP + T P  APT+ E   K  + K R S
Sbjct: 60  PYMWRNQHRFILPYGIPMQYPALFLPGGIFTHPIVPTDPNLAPTSGEVGRKISDEKGRTS 119

Query: 120 AKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARANTENNT 179
           AKKS G             SGS +  V + AE+    SS  +D                 
Sbjct: 120 AKKSIGV------------SGSTSFAVDKGAENQKAASSSDND----------------- 150

Query: 180 AEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNP-SGASP--AVAPAGIM 236
                           P+ +   G+D         G+ ++R+NP   A+P   V   G++
Sbjct: 151 ---------------CPSLSSENGVD---------GSLEVRSNPLDVAAPGAIVVHDGML 186

Query: 237 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 296
           PDQ + DERELKRQ+RKQSNRESARRSRLRKQA+ +ELQ R++ LS ENR LR  LQR+S
Sbjct: 187 PDQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRIS 246

Query: 297 EECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGE 336
           E C ++TSEN+SIKE+L R  GP+ +  L + N  ++ GE
Sbjct: 247 EACAEVTSENHSIKEELLRNYGPDGLTRLPR-NLQEAAGE 285

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|Q99089|CPRF1_PETCR Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/322 (37%), Positives = 170/322 (52%), Gaps = 57/322 (17%)

Query: 28  YADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVPYQAIYPPG 86
           Y DW++ MQA+YG     PP+F   VAS  +PHPY+WG   P+MPPYG  VPY A+Y  G
Sbjct: 32  YPDWAA-MQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYG--VPYAALYAHG 88

Query: 87  GVYAHPSMATTPTAA-PTNTEPEGKGPEAKDRASAKKSKG-------TPGGKAGEIVKAT 138
           GVYAHP +   P AA P + +   K     +    KK KG          GKA     ++
Sbjct: 89  GVYAHPGV---PLAASPMSMDTHAKSSGTNEHGLIKKLKGHDDLAMSIGNGKA----DSS 141

Query: 139 SGSGNDGVSQSAESGSDGSSDASDENG-----NQQEFARANTENNTAEA----------- 182
            G     +SQS E+  +GSSD S+EN      N ++  R    N   E            
Sbjct: 142 EGEMERTLSQSKET--EGSSDGSNENSKRAAVNGRKRGRDEAPNMIGEVKIETQSSVIPS 199

Query: 183 -------VPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNP---SGASPAVA- 231
                  + G     P+V+       +       SP+   + +++ +P   +  SPA   
Sbjct: 200 PRAKSEKLLGITVATPMVAGKVVGTVV-------SPSMTSSLELKDSPKEHAVNSPAGGQ 252

Query: 232 -PAGIMP-DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 289
            P+ +MP D W+ ++R+LKR++RKQSNRESARRSRLRKQAE EEL  +V++L+ EN  L+
Sbjct: 253 QPSTMMPNDSWLHNDRDLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALK 312

Query: 290 DELQRLSEECEKLTSENNSIKE 311
            E+ RL+   EKLT++N+ + E
Sbjct: 313 AEINRLTLTAEKLTNDNSRLLE 334

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 139/347 (40%), Positives = 173/347 (49%), Gaps = 62/347 (17%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTT-----PSYADWSSSMQAFYGAGATPPP-FFASTVA 54
           MG+ + +T +K +K     Q   TT     P Y +W      F G  A PP  FF   VA
Sbjct: 1   MGSNDPSTPSKASKPPEQEQPPATTSGTTAPVYPEWP----GFQGYPAMPPHGFFPPPVA 56

Query: 55  SPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEA 114
           +   HPY+WG QH ++PPYGTP P   +YPPG VYAHP   T P   P +   +  G   
Sbjct: 57  AGQAHPYMWGPQH-MVPPYGTPPPPYMMYPPGTVYAHP---TAPGVHPFHYPMQTNGNLE 112

Query: 115 KDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQS-------------AESGSDGSSDAS 161
              A              E  K TSG   +GV+ +             A S +D  S  +
Sbjct: 113 PAGAQGAAPGAAETNGKNEPGK-TSGPSANGVTSNSESGSDSESEGSDANSQNDSHSKEN 171

Query: 162 D--ENGNQQ----EFARANTENNTAEAVP---GSVPGKPVVSMPATNLNIGMDLWNTSPA 212
           D  ENG+ Q      +   T N     VP   G+V G   V+ PATNLNIGMD W  +  
Sbjct: 172 DVNENGSAQNGVSHSSSHGTFNKPMPLVPVQSGAVIG---VAGPATNLNIGMDYWGAT-- 226

Query: 213 AAGAAKMRTNPSGASPAVAPAGIMP------DQWIQDERELKRQKRKQSNRESARRSRLR 266
                       G+SP  A  G +P      +QW  DERELK+QKRK SNRESARRSRLR
Sbjct: 227 ------------GSSPVPAMRGKVPSGSARGEQW--DERELKKQKRKLSNRESARRSRLR 272

Query: 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313
           KQAECEEL  R E L +EN +LR EL R+ +E E+L S+N S+K  L
Sbjct: 273 KQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P42776|GBF3_ARATH G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 163/315 (51%), Gaps = 47/315 (14%)

Query: 28  YADWSSSMQAFYGAGATPPPFFASTVASPT--PHPYLWGSQHPLMPPYGTPVPYQAIYPP 85
           Y DW++ MQA+YG     PP++ S +A+    P PY+W  QH +M PYG   PY A+YP 
Sbjct: 30  YPDWAA-MQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQH-MMSPYG--APYAAVYPH 85

Query: 86  GG-VYAHPSM----------------------ATTPTAAPTNTEPEGKGPEAK--DRASA 120
           GG VYAHP +                        TPT +  NT+  G   + K  D  + 
Sbjct: 86  GGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTD-NGLMKKLKEFDGLAM 144

Query: 121 KKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARANTENNTA 180
               G P   A E  ++ + S  DG    +  GSDG++  +DE   + + +R  T     
Sbjct: 145 SLGNGNPENGADEHKRSRNSSETDG----STDGSDGNTTGADEP--KLKRSREGTPTKDG 198

Query: 181 EAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAG-AAKMRTNPSGA-SPAVAPAGIMPD 238
           + +   V      S+  ++ + G+ L   S A         +NP  + S A+ P    P+
Sbjct: 199 KQL---VQASSFHSVSPSSGDTGVKLIQGSGAILSPGVSANSNPFMSQSLAMVP----PE 251

Query: 239 QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 298
            W+Q+ERELKR++RKQSNRESARRSRLRKQAE EEL  +VE L+ EN  LR EL +L+E+
Sbjct: 252 TWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEK 311

Query: 299 CEKLTSENNSIKEDL 313
            +KL   N ++ + L
Sbjct: 312 SDKLRGANATLLDKL 326

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|P42775|GBF2_ARATH G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 158/335 (47%), Gaps = 41/335 (12%)

Query: 1   MGTGEE----NTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVA-S 55
           MG+ EE    N S K ++ A+  Q       + DW++ MQA+YG     P ++ S +A  
Sbjct: 1   MGSNEEGNPTNNSDKPSQAAAPEQSNVHV-YHHDWAA-MQAYYGPRVGIPQYYNSNLAPG 58

Query: 56  PTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHP--SMATTP----------TAAPT 103
             P PY+W S  P+M PYG P P     PPGGVYAHP   M + P             P 
Sbjct: 59  HAPPPYMWASPSPMMAPYGAPYP--PFCPPGGVYAHPGVQMGSQPQGPVSQSASGVTTPL 116

Query: 104 NTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESG---SDGSSDA 160
             +         D    KK K    G A  I     GS     S+   S    +DGSS+ 
Sbjct: 117 TIDAPANSAGNSDHGFMKKLKEF-DGLAMSISNNKVGSAEHSSSEHRSSQSSENDGSSNG 175

Query: 161 SDENGNQQEFARANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMR 220
           SD N    E +R       + +  G  P     S+P    N   D+   +P    A   +
Sbjct: 176 SDGNTTGGEQSRRKRRQQRSPST-GERPSS-QNSLPLRGENEKPDVTMGTPVMPTAMSFQ 233

Query: 221 TNPSGASPAVAPAGI--MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARV 278
            +          AG+  +P  W  +E+E+KR+KRKQSNRESARRSRLRKQAE E+L  +V
Sbjct: 234 NS----------AGMNGVPQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKV 281

Query: 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313
           + L  EN +LR +L +L+ E EKL  EN +I + L
Sbjct: 282 DALVAENMSLRSKLGQLNNESEKLRLENEAILDQL 316

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99142|TAF1_TOBAC Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 129/267 (48%), Gaps = 47/267 (17%)

Query: 86  GGVYAHPS-----------MATTPTA------APTNTEPEGKGPEAKDRASAKKSKG--- 125
           GGVYAHP            MAT+P        A  + +   K  E  DR     S G   
Sbjct: 3   GGVYAHPGVPIGSHPPGHGMATSPAVSQAMDGASLSLDASAKSSENSDRGLLAMSLGNGS 62

Query: 126 ---TPGG------KAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARA--- 173
                GG      ++G+   +T GS  +G   S  S         D +G+ +   R    
Sbjct: 63  ADNIEGGADHGNSQSGDTEDSTDGSDTNGAGVSERSKKRSRETTPDNSGDSKSHLRRCQP 122

Query: 174 ------NTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGAS 227
                 ++E       PG V  K + ++ + ++   +++ N  PA+       TN S  S
Sbjct: 123 TGEINDDSEKAIVAVRPGKVGEKVMGTVLSPSMTTTLEMRN--PASTHLKASPTNVSQLS 180

Query: 228 PAVAPAGIMPDQ-WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENR 286
           PA      +P++ W+Q+ERELKR+KRKQSNRESARRSRLRKQAE EEL  RV++L+ EN 
Sbjct: 181 PA------LPNEAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENM 234

Query: 287 NLRDELQRLSEECEKLTSENNSIKEDL 313
            L+ E+ +L E  EKL  EN ++ E L
Sbjct: 235 TLKSEINKLMENSEKLKLENAALMERL 261

Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.

Nicotiana tabacum (taxid: 4097)

>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 8/122 (6%)

Query: 188 PGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDEREL 247
           PG+  ++  A NLNIGMD  + SP++    ++    S  S A             DEREL
Sbjct: 200 PGRAALTSAAPNLNIGMDPLSASPSSLVQGEVNAAASSQSNASLSQ--------MDEREL 251

Query: 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 307
           KR++RKQSNRESARRSRLRKQ ECEEL  +V  L+  N  LR EL +L ++C+ + +EN 
Sbjct: 252 KRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENK 311

Query: 308 SI 309
            +
Sbjct: 312 KL 313

Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|O35451|ATF6B_MOUSE Cyclic AMP-dependent transcription factor ATF-6 beta OS=Mus musculus GN=Atf6b PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 12/113 (10%)

Query: 209 TSPAAAGAAKMRTNPSGASPA--------VAPAGIMPDQWI---QDERELKRQKRKQSNR 257
            SP       +R  P G +PA        + PA  MP        D + LKRQ+R   NR
Sbjct: 275 VSPVVLIQGAIRVQPEGPAPAAPRPERKSIVPAP-MPGNSCPPEVDAKLLKRQQRMIKNR 333

Query: 258 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310
           ESA +SR +K+   + L+AR++ +  +N+ LR E   L    E L +EN+ +K
Sbjct: 334 ESACQSRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSGLK 386

Transcriptional factor that acts in the unfolded protein response (UPR) pathway by activating UPR target genes induced during ER stress. Binds DNA on the 5'-CCAC[GA]-3' half of the ER stress response element (ERSE) (5'-CCAATN(9)CCAC[GA]-3') when NF-Y is bound to ERSE.

Mus musculus (taxid: 10090)

>sp|Q54Y73|BZPD_DICDI Probable basic-leucine zipper transcription factor D OS=Dictyostelium discoideum GN=bzpD PE=3 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 43/64 (67%)

Query: 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 301
           +DER +K+Q+R   NRESA+ SR+RK+   E+L+  +  L+ +N +L++E+  L    ++
Sbjct: 387 EDERNVKKQRRLIKNRESAQLSRMRKKIYIEDLEKTISDLTQDNSSLKEEVLYLQGLVKQ 446

Query: 302 LTSE 305
           L ++
Sbjct: 447 LAAQ 450

Probable transcriptional regulator.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
224134370	375	predicted protein [Populus trichocarpa]	0.970	0.88	0.708	1e-136
255568263	350	G-box-binding factor, putative [Ricinus	0.982	0.954	0.744	1e-131
118488723	354	unknown [Populus trichocarpa]	0.964	0.926	0.743	1e-129
225430826	364	PREDICTED: G-box-binding factor 1 [Vitis	1.0	0.934	0.722	1e-128
449451503	377	PREDICTED: G-box-binding factor 1-like [	0.988	0.891	0.667	1e-126
359806400	337	bZIP transcription factor bZIP115 [Glyci	0.938	0.946	0.713	1e-122
302398637	348	BZIP domain class transcription factor [	0.938	0.916	0.702	1e-121
351721587	338	bZIP transcription factor bZIP117 [Glyci	0.944	0.949	0.702	1e-119
1354857	339	bZIP transcriptional repressor ROM1 [Pha	0.941	0.943	0.699	1e-117
156070764	355	unknown [Solanum melongena]	0.947	0.907	0.658	1e-116

>gi|224134370|ref|XP_002327821.1| predicted protein [Populus trichocarpa] gi|222836906|gb|EEE75299.1| predicted protein [Populus trichocarpa]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/364 (70%), Positives = 283/364 (77%), Gaps = 34/364 (9%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGT EE+T AK +K ASS QEIP TPSY DWS+S+QA+YGAGATPPPFFASTVASPTPHP
Sbjct: 1   MGTREESTPAKPSKPASSNQEIPATPSYPDWSNSVQAYYGAGATPPPFFASTVASPTPHP 60

Query: 61  YLWGSQ--------------------HPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTA 100
           Y+WGSQ                    HPL+PPYGTPVPY A+YP GGVYAHP+MA TP +
Sbjct: 61  YIWGSQVDISYCLRKAFIFFSVDNFQHPLIPPYGTPVPYPALYPAGGVYAHPNMAPTPNS 120

Query: 101 APTNTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDA 160
           AP NTE EGK P+ KD ASAKK+KGT GGKAGE  KA S SGNDG SQSAESG+DGSSDA
Sbjct: 121 APANTELEGKVPDGKDHASAKKAKGTSGGKAGESGKAISDSGNDGASQSAESGTDGSSDA 180

Query: 161 SDENGNQQE------------FARANTENNTAEA-VPGSVPGKPVVSMPATNLNIGMDLW 207
           SDEN NQQE             A AN ++N+A A +  SVPGKPV SMPATNLNIGMDLW
Sbjct: 181 SDENTNQQENAANKKGSFNQMLADANAQSNSAGANIQTSVPGKPVGSMPATNLNIGMDLW 240

Query: 208 NTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRK 267
           N SP A+G  KMR NPSGAS  + PAG MP+QWIQDERELKRQKRKQSNRESARRSRLRK
Sbjct: 241 NASPDASGTTKMRPNPSGASSGIVPAG-MPEQWIQDERELKRQKRKQSNRESARRSRLRK 299

Query: 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327
           QAECEELQ RVE LSN+N NLRDELQ LSEEC KL SEN+ IKE+L+RL GPEAVANLEQ
Sbjct: 300 QAECEELQVRVENLSNDNCNLRDELQSLSEECNKLKSENDFIKEELTRLYGPEAVANLEQ 359

Query: 328 SNPT 331
           +NP 
Sbjct: 360 TNPV 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568263|ref|XP_002525106.1| G-box-binding factor, putative [Ricinus communis] gi|223535565|gb|EEF37233.1| G-box-binding factor, putative [Ricinus communis]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/356 (74%), Positives = 290/356 (81%), Gaps = 22/356 (6%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGTGEE+T AK +K  SS QEIP TP+Y DWS+SMQA+YGAGATPP FFASTV SPTPHP
Sbjct: 1   MGTGEESTPAKPSKP-SSAQEIPPTPAYPDWSNSMQAYYGAGATPP-FFASTVPSPTPHP 58

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWG QHPLMPPYGTPVPY A+YP GGVYAHP+MAT P  A  NTE EGKGP+ +++AS 
Sbjct: 59  YLWGGQHPLMPPYGTPVPYPALYPAGGVYAHPNMATPPNPAQANTEYEGKGPDGREKASV 118

Query: 121 KKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEF---------- 170
           KKSKG   GKAGE  KATSGSGNDG SQSAESGSDGSSDASDEN N Q+F          
Sbjct: 119 KKSKGNVVGKAGESAKATSGSGNDGASQSAESGSDGSSDASDENNNHQDFAANKKGSFDQ 178

Query: 171 --ARANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAA-GAAKMRTNPSGAS 227
             A AN +NNTA A   SVPGKPVVSMPATNLNIGMDLWN SPAAA GA K+R N SG S
Sbjct: 179 MLADANAQNNTAGA---SVPGKPVVSMPATNLNIGMDLWNASPAAAPGATKIRPNASGGS 235

Query: 228 PAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRN 287
             + PA IMP+QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL+ +NRN
Sbjct: 236 SGIVPA-IMPEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLTTDNRN 294

Query: 288 LRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT---QSCGEEENS 340
           LRDELQRLSEEC+KL SEN+SIKE+L+RL GP+AVANLEQSN +   Q  G+E NS
Sbjct: 295 LRDELQRLSEECDKLKSENDSIKEELTRLYGPDAVANLEQSNHSSVVQFRGDEGNS 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488723|gb|ABK96172.1| unknown [Populus trichocarpa]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/343 (74%), Positives = 280/343 (81%), Gaps = 15/343 (4%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGTGEE+T AK +K  SS QEIPTTP Y DWSSSMQA+YGAGATPPPF+ASTVASP  HP
Sbjct: 1   MGTGEESTPAKPSKPTSSNQEIPTTPLYPDWSSSMQAYYGAGATPPPFYASTVASPASHP 60

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWGSQHPL+PPYGTPVPY A+YP GGVYAHP+MA TP +A  N E EGK P  KDRASA
Sbjct: 61  YLWGSQHPLIPPYGTPVPYPALYPAGGVYAHPNMAPTPNSAQANIEMEGKVPNGKDRASA 120

Query: 121 KKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEF---------- 170
           KK+KGT GGKAGE  KA SGSGNDG SQSAESGSDGSSDASDEN NQQE+          
Sbjct: 121 KKTKGTSGGKAGESGKAASGSGNDGASQSAESGSDGSSDASDENTNQQEYGASKKGSFNQ 180

Query: 171 --ARANTENNTAEA-VPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGAS 227
             A AN ++ +A A +  SVPGKPV SMPATNLNIGMDLWN S +AAGA KMR NPS A+
Sbjct: 181 MLADANAQSTSAGANIQASVPGKPVASMPATNLNIGMDLWNAS-SAAGATKMRPNPSCAT 239

Query: 228 PAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRN 287
             V PAG+ P+QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARV+ LS++N N
Sbjct: 240 SGVVPAGL-PEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQNLSSDNSN 298

Query: 288 LRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 330
           LR+ELQ LSEEC KL SEN+SIKE+L+RL GPE VA LEQSNP
Sbjct: 299 LRNELQSLSEECNKLKSENDSIKEELTRLYGPEVVAKLEQSNP 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430826|ref|XP_002272761.1| PREDICTED: G-box-binding factor 1 [Vitis vinifera] gi|297735196|emb|CBI17558.3| unnamed protein product [Vitis vinifera]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 263/364 (72%), Positives = 292/364 (80%), Gaps = 24/364 (6%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG GE+ T  K +K  SS QE+PTTPSY +WSSSMQA+YG GATPPPFFA +VASPTPHP
Sbjct: 1   MGAGEDTTPTKPSKPTSSAQEMPTTPSYPEWSSSMQAYYGPGATPPPFFAPSVASPTPHP 60

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWGSQHPL+PPYGTPVPY A+YPPGGVYAHP++AT P+AA  N E EGKGPE KD+ASA
Sbjct: 61  YLWGSQHPLIPPYGTPVPYSALYPPGGVYAHPNLATAPSAAHLNPELEGKGPEGKDKASA 120

Query: 121 KKSKGTPGG--KAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFAR------ 172
           KKSKGT G   K GE  KA SGSGNDG S SAESGS+GSSDASDEN NQQEFA       
Sbjct: 121 KKSKGTSGNTVKGGESGKAASGSGNDGASPSAESGSEGSSDASDENTNQQEFASSKKGSF 180

Query: 173 ------ANTENN-TAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSG 225
                 AN +NN +  +V  SVPGKPV+SMPATNLNIGMDLW+ SP  +GA K+R NPSG
Sbjct: 181 NQMLADANAQNNISGTSVQASVPGKPVISMPATNLNIGMDLWSASPGGSGATKLRPNPSG 240

Query: 226 ASPAVAPA------GIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVE 279
            S +VAPA      G+MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQA+VE
Sbjct: 241 ISSSVAPAAMVGREGVMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQAKVE 300

Query: 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV-ANLEQSNPT--QSCGE 336
           TLS EN  LRDELQRLSEECEKLTSENNSIKE+L+R+CG +AV ANL++ NPT  QS G 
Sbjct: 301 TLSTENTALRDELQRLSEECEKLTSENNSIKEELTRVCGADAVAANLKEKNPTQLQSQGV 360

Query: 337 EENS 340
           E NS
Sbjct: 361 EGNS 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451503|ref|XP_004143501.1| PREDICTED: G-box-binding factor 1-like [Cucumis sativus] gi|449530949|ref|XP_004172454.1| PREDICTED: G-box-binding factor 1-like [Cucumis sativus]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/364 (66%), Positives = 278/364 (76%), Gaps = 28/364 (7%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGTGEE T +KT+K  SS+QEI  TPSY DWSSS+QA+YGAGATPPPFFASTVASPTPHP
Sbjct: 12  MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSVQAYYGAGATPPPFFASTVASPTPHP 71

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWG QHPLM PYGTPVPY AIYPPGGVYAHP++  TP + P N E EGK P+ K+R S 
Sbjct: 72  YLWGGQHPLMSPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERVS- 130

Query: 121 KKSKG------TPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFAR-- 172
           KKSKG      + GG+ GE  K  S SGNDG SQSAESG++GSS+ SDENGNQQEFA   
Sbjct: 131 KKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENGNQQEFAANK 190

Query: 173 -----------ANTENNTAE-AVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMR 220
                      AN +NNT       SV GKP+ ++P TNLN+GMDLWNT+ A +GA K+R
Sbjct: 191 KGSFNQMLADGANAQNNTGGPNAKSSVTGKPIANIPGTNLNMGMDLWNTTNAGSGAGKVR 250

Query: 221 TNPSGAS----PAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQA 276
            N   ++    P V   G+MP+QW+QDERELKRQKRKQSNRESARRSRLRKQAECEELQA
Sbjct: 251 GNAVSSAIVTVPMVGRDGMMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQA 310

Query: 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN---PTQS 333
           RV+TL+NENR LRDELQRLSEECEKLTSEN+SIKE+L+R CGPEA+AN E+ N   P QS
Sbjct: 311 RVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFEKGNAAPPAQS 370

Query: 334 CGEE 337
            G E
Sbjct: 371 RGGE 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806400|ref|NP_001240983.1| bZIP transcription factor bZIP115 [Glycine max] gi|255636358|gb|ACU18518.1| unknown [Glycine max]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/342 (71%), Positives = 267/342 (78%), Gaps = 23/342 (6%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG GEE+T AK++K +S+ QE PT  +Y DWSSSMQA+Y  G TPPPFFASTVASPTPHP
Sbjct: 1   MGAGEEST-AKSSKVSSAAQETPTALAYPDWSSSMQAYYAPGGTPPPFFASTVASPTPHP 59

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWGSQHPLMPPYGTPVPY AIYPPG +YAHPSMA  P+    +TE EGKG + KDR  +
Sbjct: 60  YLWGSQHPLMPPYGTPVPYPAIYPPGSIYAHPSMAVNPSIVQQSTEIEGKGADGKDRDLS 119

Query: 121 KKSKGTP---GGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFAR----- 172
           KK KGT    G KAGE  KA SGSGNDG+SQS ESGS+GSS+ASDEN NQQE A      
Sbjct: 120 KKLKGTSANTGSKAGESGKAGSGSGNDGISQSGESGSEGSSNASDENTNQQESAAKKKGS 179

Query: 173 --------ANTENNTAEAVP-GSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNP 223
                   AN +NN+A A+   SVPGKPVV MPATNLNIGMDLWN S   A AAKMR N 
Sbjct: 180 FDLMLVDGANAQNNSAGAISQSSVPGKPVVPMPATNLNIGMDLWNASSGGAEAAKMRHNQ 239

Query: 224 SGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN 283
           SGA P VA    + DQW+QDERELKRQKRKQSNRESARRSRLRKQAECEELQ RVE+L  
Sbjct: 240 SGA-PGVA----LGDQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVESLGG 294

Query: 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325
           EN+ LRDELQRLSEECEKLTSENNSIKE+L RLCGPEAVANL
Sbjct: 295 ENQTLRDELQRLSEECEKLTSENNSIKEELERLCGPEAVANL 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398637|gb|ADL36613.1| BZIP domain class transcription factor [Malus x domestica]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/346 (70%), Positives = 267/346 (77%), Gaps = 27/346 (7%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGTGEE T  K +K AS+ QEIPT PSY DWSSSMQA+YG G TPPPFFASTVASPTPHP
Sbjct: 1   MGTGEEGTPPKPSKQASTAQEIPTPPSYPDWSSSMQAYYGPGGTPPPFFASTVASPTPHP 60

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           Y+WG+QHP+MPPYGTPVPY A+YPPGGVYAHPSM TTP A     E EGKG + K+RAS 
Sbjct: 61  YMWGAQHPMMPPYGTPVPYPAMYPPGGVYAHPSMVTTPGAPQPAPELEGKGSDGKERAST 120

Query: 121 KKSKGT------PGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFAR-- 172
           KK+KGT       GGKA E  KATSGSGNDG SQS ESGS+GSSD SD+N N QE+    
Sbjct: 121 KKTKGTAGNASLAGGKAVESGKATSGSGNDGASQSGESGSEGSSDGSDDNANHQEYGTNK 180

Query: 173 -----------ANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRT 221
                      AN +N+T  A+  SVPGKP VSMP TNLNIGMDLWN SPA AGAAK+R 
Sbjct: 181 KGSFDKMLADGANAQNSTG-AIQASVPGKP-VSMPGTNLNIGMDLWNASPAGAGAAKVRG 238

Query: 222 NPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL 281
           NPSGA  A        + WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVE L
Sbjct: 239 NPSGAPSAGG------EHWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVEVL 292

Query: 282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327
           SNEN  LR+EL RLSEECEKLTSEN +IKE+L+R+CGP+ VANLEQ
Sbjct: 293 SNENHGLREELHRLSEECEKLTSENTNIKEELTRVCGPDLVANLEQ 338

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721587|ref|NP_001237982.1| bZIP transcription factor bZIP117 [Glycine max] gi|113367212|gb|ABI34663.1| bZIP transcription factor bZIP117 [Glycine max]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/343 (70%), Positives = 267/343 (77%), Gaps = 22/343 (6%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG GEE+T+  +  ++S+ Q+ PT P+Y DWSSSMQA+Y  GATPPPFFA+TVASPTPHP
Sbjct: 1   MGAGEESTAKSSKSSSSAQQDTPTAPAYPDWSSSMQAYYAPGATPPPFFATTVASPTPHP 60

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWG QHPLMPPYGTPVPY AIYPPG +YAHPSMA TP+A   NTE EGKG E K R S+
Sbjct: 61  YLWGGQHPLMPPYGTPVPYPAIYPPGSIYAHPSMAVTPSAVQQNTEIEGKGAEGKYRDSS 120

Query: 121 KKSKG---TPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFAR----- 172
           KK KG       KAGE  KA SGSGNDG+SQS ESGS+GSS+ASDEN NQQE A      
Sbjct: 121 KKLKGPSANTASKAGESGKAGSGSGNDGISQSGESGSEGSSNASDENTNQQESAANKKGS 180

Query: 173 --------ANTENNTAEAVP-GSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNP 223
                   AN +NN+A A+   SVPGKPVV MPATNLNIGMDLWN S   A AAKMR N 
Sbjct: 181 FDLMLVDGANAQNNSAGAISQSSVPGKPVVPMPATNLNIGMDLWNASSGGAEAAKMRHNQ 240

Query: 224 SGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN 283
           SGA P VA    + DQW+QDERELKRQKRKQSNRESARRSRLRKQAECEELQ RVE+L  
Sbjct: 241 SGA-PGVA----LGDQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVESLGG 295

Query: 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326
           EN+ LR+ELQRLSEECEKLTSENNSIKE+L RLCGPEAVANL+
Sbjct: 296 ENQTLREELQRLSEECEKLTSENNSIKEELERLCGPEAVANLD 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1354857|gb|AAB36514.1| bZIP transcriptional repressor ROM1 [Phaseolus vulgaris]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 269/343 (78%), Gaps = 23/343 (6%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG GEE ++ K++K++SS QE PT P+Y DWSSSMQA+Y  GA PPPFFASTVASPTPHP
Sbjct: 1   MGAGEE-STTKSSKSSSSVQETPTVPAYPDWSSSMQAYYAPGAAPPPFFASTVASPTPHP 59

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAH-PSMATTPTAAPTNTEPEGKGPEAKDRAS 119
           YLWGSQHPLMPPYGTPVPY A+YPPG +YAH PSMA TP+    +TE EGKG + KDR S
Sbjct: 60  YLWGSQHPLMPPYGTPVPYPALYPPGSIYAHHPSMAVTPSVVQQSTEIEGKGTDGKDRDS 119

Query: 120 AKKSKGT---PGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFAR---- 172
           +KK KGT    G KAGE  KA SGSGNDG+SQS ESGS+GSS+ASDEN NQQE A     
Sbjct: 120 SKKLKGTSANAGSKAGESGKAGSGSGNDGMSQSGESGSEGSSNASDENNNQQESATNKKG 179

Query: 173 ---------ANTENNTAEAVP-GSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTN 222
                    AN +NN+  A+   S+PGKPVVSMPATNLNIGMDLWN S     AAKMR N
Sbjct: 180 SFDLMLVDGANAQNNSGGAISQSSMPGKPVVSMPATNLNIGMDLWNASSGGGEAAKMRHN 239

Query: 223 PSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLS 282
            SGA   VA    + +QWIQDERELKRQKRKQSNRESARRSRLRKQAECE+LQ RVETL 
Sbjct: 240 QSGAPGVVA----LGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEDLQKRVETLG 295

Query: 283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325
           +ENR LR+ELQRLSEECEKLTSEN+SIKE+L R+CGPEAVANL
Sbjct: 296 SENRTLREELQRLSEECEKLTSENSSIKEELERMCGPEAVANL 338

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156070764|gb|ABU45179.1| unknown [Solanum melongena]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/343 (65%), Positives = 261/343 (76%), Gaps = 21/343 (6%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG  EE T  KT+K+A  TQE P  P+Y DWSSSMQA+Y AGATPP FFAS VASP PHP
Sbjct: 1   MGAEEETTPTKTSKSAL-TQETPPAPAYPDWSSSMQAYYSAGATPP-FFASPVASPAPHP 58

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMAT-TPTAAPTNTEPEGKGPEAKDRAS 119
           YLWG QHPLMPPYGTPVPY A+YPP GVYAHP++AT TP  AP N E +GKGPE KDR S
Sbjct: 59  YLWGGQHPLMPPYGTPVPYPALYPPAGVYAHPNIATQTPNTAPANPESDGKGPEGKDRNS 118

Query: 120 AKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFAR------- 172
           +KK K   GGKAG+  K TSGSGNDG +QS ES S+G++D +DE  N  EFA        
Sbjct: 119 SKKLKACSGGKAGDNGKVTSGSGNDGATQSDESRSEGTTDTNDETDNH-EFAANKKGSFD 177

Query: 173 ------ANTENNTA-EAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSG 225
                 A+ +NN A E  P S+ G PV ++PATNLNIGMD+WN S AA GA K++ N SG
Sbjct: 178 QMLADGASAQNNPATENYPTSIHGNPV-AVPATNLNIGMDVWNASAAAPGAIKVQPNASG 236

Query: 226 ASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNEN 285
             P +   G M DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQ RVE LS+EN
Sbjct: 237 --PVIVHEGRMNDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALSHEN 294

Query: 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328
            +L+DELQ+LSEECEKLTSENNSIKE+L+R+CGP+AV+ LE++
Sbjct: 295 HSLKDELQQLSEECEKLTSENNSIKEELTRICGPDAVSKLERN 337

Source: Solanum melongena

Species: Solanum melongena

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2062455	409	bZIP16 "basic region/leucine z	0.411	0.342	0.482	5.8e-51
TAIR|locus:2115250	315	GBF1 "G-box binding factor 1"	0.870	0.939	0.361	2.8e-43
TAIR|locus:2031705	389	bZIP68 "basic region/leucine z	0.314	0.275	0.495	2e-40
TAIR|locus:2063020	382	GBF3 "G-box binding factor 3"	0.305	0.272	0.477	2.4e-38
TAIR|locus:2124938	360	GBF2 "G-box binding factor 2"	0.223	0.211	0.564	5e-32
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.258	0.508	0.395	2.4e-11
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.294	0.606	0.358	2.4e-11
TAIR|locus:2827461	166	bZIP48 "AT2G04038" [Arabidopsi	0.214	0.439	0.486	3.1e-11
TAIR|locus:2012413	138	bZIP "AT1G68880" [Arabidopsis	0.211	0.521	0.479	4.1e-11
TAIR|locus:2143191	186	bZIP3 "AT5G15830" [Arabidopsis	0.191	0.349	0.461	1.6e-10

TAIR|locus:2062455 bZIP16 "basic region/leucine zipper transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 5.8e-51, Sum P(3) = 5.8e-51
 Identities = 71/147 (48%), Positives = 88/147 (59%)

Query:   198 TNLNIGMDLWNTSPAAAGA----AKMRTNXXXXXXXXXXXXIMPDQWIQDERELKRQKRK 253
             TNLNIGMD W  +P +AG      K+ T                  W+QD+RELKRQ+RK
Sbjct:   254 TNLNIGMDYWG-APTSAGIPGMHGKVSTPVPGVVAPGSRDGGHSQPWLQDDRELKRQRRK 312

Query:   254 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313
             QSNRESARRSRLRKQAEC+EL  R E L+ EN NLR E+ +L  +CE+LT+EN S+K+ L
Sbjct:   313 QSNRESARRSRLRKQAECDELAQRAEVLNEENTNLRAEINKLKSQCEELTTENTSLKDQL 372

Query:   314 SRLCGPEAVA--NLEQSNPTQSCGEEE 338
             S     E ++  N  Q   T   G  E
Sbjct:   373 SLFPPLEGISMDNDHQEPDTNQTGAAE 399

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2115250 GBF1 "G-box binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 118/326 (36%), Positives = 151/326 (46%)

Query:     1 MGTGEENXXXXXXXXXXXXQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
             MGT E+             QE+P TP Y DW +SMQA+YG G TP PFF S V SP+PHP
Sbjct:     1 MGTSEDKMPFKTTKPTSSAQEVPPTP-YPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHP 59

Query:    61 YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMXXXXXXXXXXXXXXGKGPEAKDRASA 120
             Y+WG+QH +MPPYGTPVPY A+YPPG VYAHPSM               K P AKD+AS 
Sbjct:    60 YMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSMPMPPNSGPT-----NKEP-AKDQASG 113

Query:   121 KKSKGTPGGKAGEIVKATSGSGNDGVSQXXXXXXXXXXXXXXXXXXQQE--------FAR 172
             KKSKG    KA    KA SGSGNDG S                   QQE        F +
Sbjct:   114 KKSKGNSKKKAEGGDKALSGSGNDGASHSDESVTAGSSDENDENANQQEQGSIRKPSFGQ 173

Query:   173 XXXXXXXXXXXXXXXXXXXXXXXX-ATNLNIGMDLWNTS---PAAAGAAKMRTNXXXXXX 228
                                       TNLNIGMDLW++    P        R        
Sbjct:   174 MLADASSQSTTGEIQGSVPMKPVAPGTNLNIGMDLWSSQAGVPVKDERELKRQKRKQSNR 233

Query:   229 XXXXXXIMPDQWIQDERELKRQKRKQSNRESARRSRLRK-QAECEELQARVETLSNENRN 287
                    +  Q   +  +L+++    SN   + R  L++  +EC++L++       EN +
Sbjct:   234 ESARRSRLRKQ--AECEQLQQRVESLSNENQSLRDELQRLSSECDKLKS-------ENNS 284

Query:   288 LRDELQR-LSEECEKLTSENNSIKED 312
             ++DELQR L  E      +N +  +D
Sbjct:   285 IQDELQRVLGAEAVANLEQNAAGSKD 310

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IEP

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2031705 bZIP68 "basic region/leucine zipper transcription factor 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
 Identities = 59/119 (49%), Positives = 74/119 (62%)

Query:   198 TNLNIGMDLWNTSPAAAGAAKMRTNXXXXXXXXXXXXIMPDQWIQ--DERELKRQKRKQS 255
             TNLNIGMD W+     +GA                    P  W+Q  DERE+KRQ+RKQS
Sbjct:   255 TNLNIGMDYWSGHGNVSGAVP--------GVVVDGSQSQP--WLQVSDEREIKRQRRKQS 304

Query:   256 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314
             NRESARRSRLRKQAEC+EL  R E L+ EN +LR E+ +L  + E+L +EN+S+K   S
Sbjct:   305 NRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELLAENSSLKNKFS 363

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2063020 GBF3 "G-box binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.4e-38, Sum P(3) = 2.4e-38
 Identities = 52/109 (47%), Positives = 71/109 (65%)

Query:   235 IMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 294
             + P+ W+Q+ERELKR++RKQSNRESARRSRLRKQAE EEL  +VE L+ EN  LR EL +
Sbjct:   248 VPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQ 307

Query:   295 LSEECEKLTSENNSIKEDLSRLCG-PE--AVANLEQSNPTQSCGEEENS 340
             L+E+ +KL   N ++ + L   C  PE    AN+         G++  +
Sbjct:   308 LNEKSDKLRGANATLLDKLK--CSEPEKRVPANMLSRVKNSGAGDKNKN 354

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2124938 GBF2 "G-box binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.0e-32, Sum P(2) = 5.0e-32
 Identities = 44/78 (56%), Positives = 58/78 (74%)

Query:   236 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 295
             +P  W  +E+E+KR+KRKQSNRESARRSRLRKQAE E+L  +V+ L  EN +LR +L +L
Sbjct:   241 VPQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQL 298

Query:   296 SEECEKLTSENNSIKEDL 313
             + E EKL  EN +I + L
Sbjct:   299 NNESEKLRLENEAILDQL 316

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009637 "response to blue light" evidence=IDA

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 36/91 (39%), Positives = 57/91 (62%)

Query:   248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 307
             ++Q+R  SNRESARRSR+RKQ   +EL ++V  L  EN  L D+L  LSE  +K+  EN 
Sbjct:    81 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHDKVLQENA 140

Query:   308 SIKEDLSRLCGPEAVANLEQSNPTQSCGEEE 338
              +KE+   L   + +++++  +P  SC  ++
Sbjct:   141 QLKEETFEL--KQVISDMQIQSPF-SCFRDD 168

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 38/106 (35%), Positives = 67/106 (63%)

Query:   238 DQWIQDEREL---KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 294
             D+  ++ +E+   ++QKRK SNRESARRSR+RKQ + +EL ++V  L +EN  L  +L  
Sbjct:    59 DEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNC 118

Query:   295 LSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQ-SCGEEEN 339
             + E  EK+  EN  +KE+ + L   + +++++  N +  SC  +++
Sbjct:   119 VLESQEKVIEENVQLKEETTEL--KQMISDMQLQNQSPFSCIRDDD 162

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2827461 bZIP48 "AT2G04038" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 37/76 (48%), Positives = 50/76 (65%)

Query:   241 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300
             + DER   +Q+R  SNRESARRSR+RKQ   +EL ++V  L NEN  L D+L R+SE   
Sbjct:    70 VLDER---KQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQN 126

Query:   301 KLTSENNSIKEDLSRL 316
              +  EN+ +KE+ S L
Sbjct:   127 CVLKENSKLKEEASDL 142

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2012413 bZIP "AT1G68880" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query:   243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302
             ++ E KR +RK SNRESARRSR+RKQ   EEL + +  L N+N++L DEL +  E  EK+
Sbjct:    43 EDNERKR-RRKVSNRESARRSRMRKQRHMEELWSMLVQLINKNKSLVDELSQARECYEKV 101

Query:   303 TSENNSIKEDLSR 315
               EN  ++E+ S+
Sbjct:   102 IEENMKLREENSK 114

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2143191 bZIP3 "AT5G15830" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 30/65 (46%), Positives = 47/65 (72%)

Query:   248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 307
             ++Q+R  SNRESARRSR+RKQ   +EL ++V  L +EN  L D+L ++S+  + +  EN+
Sbjct:    74 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVSDNNDLVIQENS 133

Query:   308 SIKED 312
             S+KE+
Sbjct:   134 SLKEE 138

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42774	GBF1_ARATH	No assigned EC number	0.5754	0.8911	0.9619	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	4e-54
smart00338	65	smart00338, BRLZ, basic region leucin zipper	1e-26
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-26
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	3e-15
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-06
pfam09744	158	pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated prot	8e-05
pfam07558	46	pfam07558, Shugoshin_N, Shugoshin N-terminal coile	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	2e-04
pfam06005	72	pfam06005, DUF904, Protein of unknown function (DU	2e-04
pfam03131	93	pfam03131, bZIP_Maf, bZIP Maf transcription factor	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
pfam11559	149	pfam11559, ADIP, Afadin- and alpha -actinin-Bindin	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam04156	186	pfam04156, IncA, IncA protein	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	0.002
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.002
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.002
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
pfam03962	188	pfam03962, Mnd1, Mnd1 family	0.004

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score =  175 bits (445), Expect = 4e-54
 Identities = 90/187 (48%), Positives = 112/187 (59%), Gaps = 22/187 (11%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG+ EE   +K++   S  ++ PT   Y DWS+ MQA+YG    PP F +S  +SP PHP
Sbjct: 1   MGSSEEGKPSKSSPKTSVQEDTPTPTVYPDWSA-MQAYYGPRPPPPYFNSSVASSPQPHP 59

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSM--------------ATTPTAAPTNTE 106
           Y+WG Q P+MPPYGTP PY A+YPPGGVYAHPSM              A  P + P + E
Sbjct: 60  YMWGPQQPMMPPYGTPPPYAAMYPPGGVYAHPSMPPGSHPFSPYAMPSAEVPGSTPLSME 119

Query: 107 PEGKGPEAKDRASAKKSKGTPG-------GKAGEIVKATSGSGNDGVSQSAESGSDGSSD 159
            + K  + KD+ S KKSKG+ G       GK GE  KA+  S N G SQS+ESGSDGSS+
Sbjct: 120 TDAKSSDNKDKGSIKKSKGSDGSLGLAMSGKNGESGKASGSSANGGSSQSSESGSDGSSE 179

Query: 160 ASDENGN 166
            SD N  
Sbjct: 180 GSDGNSQ 186

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score =   99 bits (250), Expect = 1e-26
 Identities = 34/65 (52%), Positives = 46/65 (70%)

Query: 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303
           E + KR++R++ NRE+ARRSR RK+AE EEL+ +VE L  EN  L+ E++RL  E EKL 
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60

Query: 304 SENNS 308
           SE   
Sbjct: 61  SELEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 99.3 bits (248), Expect = 2e-26
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query: 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303
           E+ELKR++R+Q NRE+ARRSRLRK+A  EEL+ +V+ L  EN+ LR EL+RL +EC KL 
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60

Query: 304 SEN 306
           SEN
Sbjct: 61  SEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 68.9 bits (169), Expect = 3e-15
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300
             R +++  NRE+ARRSR RK    ++L+ +VE L++EN +L DE+ RL +   
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKALA 54

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 246 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 298
           +  R +R++ N E+ARRSR +K+   EEL+ RV+ L  EN  LR ++++L +E
Sbjct: 3   DEYRDRRRR-NNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLEKE 54

Length = 54

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 242 QDERELKRQKRKQSNRESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECE 300
               EL+RQ  +   +    +  L   + E E+LQ+R+E L  E   L +EL+ L E  E
Sbjct: 702 DLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE 761

Query: 301 KLTSENNSIKEDLSRL 316
           +L  E  S++E L++L
Sbjct: 762 ELEEELESLEEALAKL 777

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 304
            E ++++ K +   +  +  L      E+L+A +E +  E    RDEL+   E+ EKL  
Sbjct: 346 EEERKRRDKLTEEYAELKEEL------EDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399

Query: 305 ENNSIKEDLSRL 316
           E N +K +L RL
Sbjct: 400 EINELKRELDRL 411

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 242 QDERELKRQKRKQSNR------ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 295
           Q ERE  ++ RKQ+ +      +   + +   Q + E+L+  V  L  + +NL D++ RL
Sbjct: 65  QYERE--KELRKQAEQKLLEFEDELEQEKKELQKKIEDLEENVRQLELKAKNLSDQVSRL 122

Query: 296 SEECEKLTSENNSIKE 311
            E   +L  E NS+ E
Sbjct: 123 EERETELKKEYNSLHE 138

This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end. Length = 158

>gnl|CDD|203682 pfam07558, Shugoshin_N, Shugoshin N-terminal coiled-coil region

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 294
           ++K  + N E A+ +      +  EL+  V  L NEN NLR+ L  
Sbjct: 2   KEKYLKQNAELAKNNSALSI-KISELEKEVSKLLNENVNLRELLLA 46

The Shugoshin protein is found to have this conserved N-terminal coiled-coil region and a highly conserved C-terminal basic region, family Shugoshin_C pfam07557. Shugoshin is a crucial target of Bub1 kinase function at kinetochores, necessary for both meiotic and mitotic localisation of shugoshin to the kinetochore. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process. Length = 46

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 241 IQDERE-------LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQ 293
           ++ E         L + K  +   E       R + E EELQ  +E    E   L+ EL+
Sbjct: 218 LKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277

Query: 294 RLSEECEKLTSENNSIKEDLSRL 316
            L EE E+L  E   +KE++  L
Sbjct: 278 ELREELEELQEELLELKEEIEEL 300

Length = 1163

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 255 SNRESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313
           S+  SAR  RL + Q E  ELQ  +  L  +   L+ E Q L +E   L +E   ++++L
Sbjct: 59  SDTPSAR-ERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL 117

Query: 314 SRL-CGPEAVANLEQSN 329
           +R+         L++ N
Sbjct: 118 ARIKQLSANAIELDEEN 134

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|203371 pfam06005, DUF904, Protein of unknown function (DUF904)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 28/46 (60%)

Query: 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317
           EEL+++++        L+ E++ L EE E+L+ EN  ++E+  +L 
Sbjct: 7   EELESKIQQAVETIALLQMEIEELKEENEQLSEENEELEEENKKLK 52

This family consists of several bacterial and archaeal hypothetical proteins of unknown function. Length = 72

>gnl|CDD|190534 pfam03131, bZIP_Maf, bZIP Maf transcription factor

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 247 LKRQKRKQSNR---ESARRSRLRKQAECE----ELQARVETLSNENRNLRDELQRLSEEC 299
           LK+++R   NR   +S R  R++++ E E    +LQ +VE L  E   L  E   L  + 
Sbjct: 29  LKQRRRTLKNRGYAQSCRSKRVQQRHELEKEKSQLQQQVEQLKQEVSRLARERDALKAKY 88

Query: 300 EKLTS 304
           E L S
Sbjct: 89  EALQS 93

Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerisation and DNA binding property. Thus, this family is probably related to pfam00170. Length = 93

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 244 ERELKRQKRK----QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 299
           E +++  + K    +      R+     + E E+L+  +E LS +   LR +L RL  E 
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 300 EKLTSENNSIKEDLSRLCGPEAVAN--LEQSNPTQSCGEEE 338
           E+L      + ++L+ L          LE++    +  E E
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 12/85 (14%)

Query: 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL------------SNENRNLRDE 291
           ERE K  K+ +   + A       +   EEL+  +E L              E   L  E
Sbjct: 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE 674

Query: 292 LQRLSEECEKLTSENNSIKEDLSRL 316
           L  L  E E+L      IK+ L +L
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKL 699

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 301
           +     +  ++ QS  E         + E EELQ R+E L  E  +L + L +L EE E+
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 302 LTSENNSIKE 311
           L  +  +++E
Sbjct: 784 LEEKRQALQE 793

Length = 1163

>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE- 305
           L+++ R    RES   +  + +AE E LQ  +E L  +  +L  EL  L  +  +L  + 
Sbjct: 42  LQQRDRDLEFRESLEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKL 101

Query: 306 ------NNSIKEDLSRL 316
                   + KE++ RL
Sbjct: 102 KTLEQKLKNEKEEVQRL 118

This family is found in mammals where it is localised at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. Length = 149

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 242 QDERELKRQ------KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 295
            + REL+        +  +   E  +      + E EEL A ++ L  +   LR E+  L
Sbjct: 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279

Query: 296 SEECEKLTSENNSIKEDLSRL 316
            EE E+L  E  ++  ++SRL
Sbjct: 280 EEEIEELQKELYALANEISRL 300

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318
              +  +  + EELQ  +  L  +   L++EL+ L E   +L SE   +KEDL  L  
Sbjct: 64  APVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRE 121

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 16/73 (21%), Positives = 30/73 (41%)

Query: 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 301
           + E EL+  +      E         +   E+L+ ++E L +E   L +E   L++  E+
Sbjct: 302 ELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEE 361

Query: 302 LTSENNSIKEDLS 314
              E     E+L 
Sbjct: 362 RLKELEERLEELE 374

Length = 908

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 251 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 304
           +R ++  E  R S L +Q    +L+ ++  L  EN  L  EL+RL  E EKL S
Sbjct: 1   ERLEALEE--RNSELEEQ--IRQLELKLRDLEAENEKLERELERLKSELEKLKS 50

Length = 389

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302
             RE +  + ++    +    R++K      L+  VE L  EN  L+ EL+ L  E EKL
Sbjct: 402 RPREKEGTEEEERREITVYEKRIKK------LEETVERLEEENSELKRELEELKREIEKL 455

Query: 303 TSENNSIKEDLS 314
            SE    + ++ 
Sbjct: 456 ESELERFRREVR 467

Length = 652

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 242 QDERELKRQKRKQSNRESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECE 300
             E E +R+      R       + + + E  EL+  +E L  E   L  EL+R   E  
Sbjct: 408 GTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467

Query: 301 K 301
            
Sbjct: 468 D 468

Length = 652

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 246 ELKRQKRKQSNRESARRSRLRK----------QAECEELQARVETLSNENRNLRDELQRL 295
           +L+ Q  +  +     R R+++          + E   L   ++       +L DEL  L
Sbjct: 56  DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAEL 115

Query: 296 SEECEKLTSENNSIKEDLSRL 316
            EE EKL  E   +KE L RL
Sbjct: 116 MEEIEKLEKEIEDLKERLERL 136

Length = 239

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 241 IQDERELKRQKRKQSNRESARRSRLRKQ-AECEELQARVETLSNENRNLRDELQRLSEEC 299
           + + ++  ++ +++ +   A   RL+K+ A  ++L A    L  ENR LR+EL  L +E 
Sbjct: 89  LAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRELREELAELKQEN 148

Query: 300 EKLTSENNSIKEDLSR 315
           E L +EN  ++E+  R
Sbjct: 149 EALEAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 245 RELKRQKRKQS-NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303
            +L+ Q  + S + ES        +   EEL++ +E L NE  +L + L  L  E E+L+
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 304 SENNSIKEDLSRL 316
            E   ++   S L
Sbjct: 901 EELRELESKRSEL 913

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETL------SNENRNLRDELQRLSEECEK 301
           +   + ++  E  ++     +    ELQA++E L      + E   L +EL++L +E +K
Sbjct: 62  QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121

Query: 302 LTSENNSIKEDLSRLCGPEAVANLEQSN 329
           L +E    ++       PE +  L++  
Sbjct: 122 LKAELEKYEK-----NDPERIEKLKEET 144

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
PF07777	189	MFMR: G-box binding protein MFMR; InterPro: IPR012	100.0
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.51
smart00338	65	BRLZ basic region leucin zipper.	99.45
KOG3584	348	consensus cAMP response element binding protein an	99.34
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.27
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.2
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.19
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.17
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.72
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.48
KOG4571	294	consensus Activating transcription factor 4 [Trans	98.35
KOG3119	269	consensus Basic region leucine zipper transcriptio	98.16
PF07777	189	MFMR: G-box binding protein MFMR; InterPro: IPR012	97.99
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.68
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	97.64
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.85
PRK10884	206	SH3 domain-containing protein; Provisional	96.82
PRK13169	110	DNA replication intiation control protein YabA; Re	96.65
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.57
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.52
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.51
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	96.48
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	96.31
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	96.12
PRK15422	79	septal ring assembly protein ZapB; Provisional	96.0
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.97
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	95.82
PRK10884	206	SH3 domain-containing protein; Provisional	95.57
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.57
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	95.49
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	95.49
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.37
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	95.34
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	95.32
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	95.3
COG4467	114	Regulator of replication initiation timing [Replic	95.21
COG4026	290	Uncharacterized protein containing TOPRIM domain,	95.06
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	94.85
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	94.78
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.68
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.68
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.64
PRK04325	74	hypothetical protein; Provisional	94.59
PRK02793	72	phi X174 lysis protein; Provisional	94.58
PRK00295	68	hypothetical protein; Provisional	94.57
PRK02119	73	hypothetical protein; Provisional	94.54
PRK00736	68	hypothetical protein; Provisional	94.52
PRK04406	75	hypothetical protein; Provisional	94.36
KOG1962	216	consensus B-cell receptor-associated protein and r	94.13
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	94.11
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	94.1
PRK11637	428	AmiB activator; Provisional	94.09
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	94.06
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	94.05
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	93.97
PRK11637	428	AmiB activator; Provisional	93.71
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.65
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.62
PRK00846	77	hypothetical protein; Provisional	93.59
PRK04406	75	hypothetical protein; Provisional	93.34
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	93.02
PRK02119	73	hypothetical protein; Provisional	93.0
KOG3119	269	consensus Basic region leucine zipper transcriptio	93.0
COG2433	652	Uncharacterized conserved protein [Function unknow	92.97
PRK13922	276	rod shape-determining protein MreC; Provisional	92.92
COG4026	290	Uncharacterized protein containing TOPRIM domain,	92.86
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.8
smart00338	65	BRLZ basic region leucin zipper.	92.79
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	92.64
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	92.61
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.59
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.59
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	92.58
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	92.4
PRK13169	110	DNA replication intiation control protein YabA; Re	92.31
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	92.3
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.27
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	92.14
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	92.07
KOG3650	120	consensus Predicted coiled-coil protein [General f	92.04
PRK00888	105	ftsB cell division protein FtsB; Reviewed	91.93
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.91
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	91.86
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	91.85
PRK02793	72	phi X174 lysis protein; Provisional	91.85
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.82
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	91.77
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	91.76
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.76
KOG3335	181	consensus Predicted coiled-coil protein [General f	91.74
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.64
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.61
PRK10803	263	tol-pal system protein YbgF; Provisional	91.59
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	91.57
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	91.53
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.49
PRK00846	77	hypothetical protein; Provisional	91.38
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	91.22
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	91.11
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	91.09
PF07412	200	Geminin: Geminin; InterPro: IPR022786 This family	90.97
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	90.89
PF15294	278	Leu_zip: Leucine zipper	90.8
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.67
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.52
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	90.5
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	90.49
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	90.4
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	90.35
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.32
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	90.26
PRK04325	74	hypothetical protein; Provisional	90.2
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	90.17
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	90.17
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.15
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.11
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	90.1
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	90.03
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	89.99
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.96
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	89.95
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	89.91
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	89.86
PRK00888	105	ftsB cell division protein FtsB; Reviewed	89.86
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	89.8
PRK00295	68	hypothetical protein; Provisional	89.72
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	89.72
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.7
COG4467	114	Regulator of replication initiation timing [Replic	89.54
PF14662	193	CCDC155: Coiled-coil region of CCDC155	89.54
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.41
PF04999	97	FtsL: Cell division protein FtsL; InterPro: IPR007	89.34
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	89.29
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	89.2
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	89.2
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	89.02
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	88.96
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	88.91
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	88.79
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	88.59
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	88.53
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	88.42
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	88.38
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	88.37
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.31
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	88.16
PRK14127	109	cell division protein GpsB; Provisional	88.02
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	88.01
PF06216	389	RTBV_P46: Rice tungro bacilliform virus P46 protei	88.01
PRK10803	263	tol-pal system protein YbgF; Provisional	88.0
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	87.98
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	87.86
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	87.75
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	87.74
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.71
KOG1962	216	consensus B-cell receptor-associated protein and r	87.64
PRK00736	68	hypothetical protein; Provisional	87.64
PHA02562	562	46 endonuclease subunit; Provisional	87.55
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	87.32
PF14662	193	CCDC155: Coiled-coil region of CCDC155	87.3
KOG1103	561	consensus Predicted coiled-coil protein [Function	87.29
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	87.27
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	87.24
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	87.13
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	87.09
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	87.04
smart00340	44	HALZ homeobox associated leucin zipper.	86.99
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	86.83
KOG4571	294	consensus Activating transcription factor 4 [Trans	86.7
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.6
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	86.47
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	86.36
PRK03992	389	proteasome-activating nucleotidase; Provisional	86.35
KOG0971	1243	consensus Microtubule-associated protein dynactin	86.31
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	86.02
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	86.01
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	85.96
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.94
KOG1318	411	consensus Helix loop helix transcription factor EB	85.93
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	85.83
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	85.74
KOG4001	259	consensus Axonemal dynein light chain [Cytoskeleto	85.7
PF13118	126	DUF3972: Protein of unknown function (DUF3972)	85.56
KOG2010	405	consensus Double stranded RNA binding protein [Gen	85.47
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	85.39
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	85.19
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	85.09
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	85.05
PRK14143	238	heat shock protein GrpE; Provisional	84.89
PF15556	252	Zwint: ZW10 interactor	84.72
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	84.7
TIGR02231	525	conserved hypothetical protein. This family consis	84.67
PF04871	136	Uso1_p115_C: Uso1 / p115 like vesicle tethering pr	84.47
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	84.43
PRK14158	194	heat shock protein GrpE; Provisional	84.4
PF14282	106	FlxA: FlxA-like protein	84.37
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	84.21
COG1792	284	MreC Cell shape-determining protein [Cell envelope	84.14
KOG4797	123	consensus Transcriptional regulator [Transcription	84.01
PRK14139	185	heat shock protein GrpE; Provisional	84.0
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	83.97
PF11500	152	Cut12: Spindle pole body formation-associated prot	83.88
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	83.85
PRK03918	880	chromosome segregation protein; Provisional	83.81
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	83.8
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	83.77
PF10669	121	Phage_Gp23: Protein gp23 (Bacteriophage A118); Int	83.71
PRK14155	208	heat shock protein GrpE; Provisional	83.66
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	83.57
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	83.44
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	83.36
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	83.16
PF07558	46	Shugoshin_N: Shugoshin N-terminal coiled-coil regi	83.12
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.12
PRK14140	191	heat shock protein GrpE; Provisional	82.97
PF15058	200	Speriolin_N: Speriolin N terminus	82.95
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	82.9
COG2433	652	Uncharacterized conserved protein [Function unknow	82.66
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	82.64
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	82.6
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	82.56
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	82.44
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	82.41
PF07558	46	Shugoshin_N: Shugoshin N-terminal coiled-coil regi	82.39
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	82.35
PF15030	277	DUF4527: Protein of unknown function (DUF4527)	82.18
PRK14160	211	heat shock protein GrpE; Provisional	82.04
PF03980	109	Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essent	81.99
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	81.98
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	81.93
PF04871	136	Uso1_p115_C: Uso1 / p115 like vesicle tethering pr	81.91
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	81.89
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	81.84
PF00038	312	Filament: Intermediate filament protein; InterPro:	81.54
PF04859	131	DUF641: Plant protein of unknown function (DUF641)	81.49
PF06210	108	DUF1003: Protein of unknown function (DUF1003); In	81.35
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	81.06
KOG0971	1243	consensus Microtubule-associated protein dynactin	81.02
smart00340	44	HALZ homeobox associated leucin zipper.	81.01
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	80.86
PF11544	76	Spc42p: Spindle pole body component Spc42p; InterP	80.83
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	80.4
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	80.36
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	80.22
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	80.19
KOG0933	1174	consensus Structural maintenance of chromosome pro	80.13

>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain

Probab=100.00  E-value=3e-63  Score=448.18  Aligned_cols=166  Identities=59%  Similarity=1.033  Sum_probs=153.8

Q ss_pred             CCCCCCCCccCCCCCCCCC-CCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCCCCC
Q 019499            1 MGTGEENTSAKTAKTASST-QEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVP   78 (340)
Q Consensus         1 mg~~e~~~~~k~~k~~s~~-~~~~~~~~~pdW~~smQaYy~~~~~pp~~~~s~vas-~~phPYmWg~q~~~~ppygtp~P   78 (340)
                      ||++|++|++|.+|+++++ ++|+++++||||+ +|||||++| ++|+||+++||+ |+|||||||+||+||||||||||
T Consensus         1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs-~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~p   78 (189)
T PF07777_consen    1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWS-AMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVP   78 (189)
T ss_pred             CCCccCCcCCCCCCCCCCCcCCCCCCccCCccH-hhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCC
Confidence            9999999999999988764 5799999999999 599999999 889999999995 99999999999999999999999


Q ss_pred             CccccCCCCcCCCCCCCC--------------CCCCCCCCCCC-CCCCCcccccccccccCCCCC-C----CCCCccccc
Q 019499           79 YQAIYPPGGVYAHPSMAT--------------TPTAAPTNTEP-EGKGPEAKDRASAKKSKGTPG-G----KAGEIVKAT  138 (340)
Q Consensus        79 Y~a~y~~Gg~yaHP~mp~--------------~~~~~~~~~e~-~~k~~~~k~~~~~kk~Kg~~G-~----k~~~~gk~~  138 (340)
                      |+||||||||||||+||+              ++..+++++|+ ++|++++|||+++|||||+|| +    ||++++|++
T Consensus        79 Y~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~  158 (189)
T PF07777_consen   79 YPAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTS  158 (189)
T ss_pred             CccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCccc
Confidence            999999999999999996              22357889999 599999999999999999994 3    889999999


Q ss_pred             cCCCCCCCcccccCCCCCCCCcCcCCCccc
Q 019499          139 SGSGNDGVSQSAESGSDGSSDASDENGNQQ  168 (340)
Q Consensus       139 ~gs~~~~~s~S~esgs~gSsdgsd~ns~~~  168 (340)
                      ++++|++.|||+||++||||||||+|++++
T Consensus       159 ~~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~  188 (189)
T PF07777_consen  159 GSSANDGSSQSSESGSEGSSDGSDGNTNND  188 (189)
T ss_pred             cCCCCCccCccccccccccccCcCccccCC
Confidence            999999999999999999999999999864

It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.51  E-value=8.8e-14  Score=105.71  Aligned_cols=64  Identities=50%  Similarity=0.738  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN  307 (340)
Q Consensus       244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~  307 (340)
                      |++.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|+.++..|..+|.
T Consensus         1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~   64 (64)
T PF00170_consen    1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH   64 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4567899999999999999999999999999999999999999999999999999999999873

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>smart00338 BRLZ basic region leucin zipper

Probab=99.45  E-value=4.2e-13  Score=102.15  Aligned_cols=62  Identities=53%  Similarity=0.748  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          246 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN  307 (340)
Q Consensus       246 e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~  307 (340)
                      +.|+.+|+++||+||++||.||++++.+|+.+|..|+.+|..|+.++..|+.++..|+.++.
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34789999999999999999999999999999999999999999999998888888877763

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.34  E-value=2.4e-12  Score=123.57  Aligned_cols=63  Identities=35%  Similarity=0.399  Sum_probs=57.8

Q ss_pred             chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          238 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       238 ~~~~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      ..-+.||.-+||+-|+++|||+||+||+|||+|+.+||.||..|+..|..|-+||+.|++-+-
T Consensus       281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc  343 (348)
T KOG3584|consen  281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC  343 (348)
T ss_pred             CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence            445678999999999999999999999999999999999999999999999999999977653

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.27  E-value=2.3e-11  Score=114.30  Aligned_cols=80  Identities=35%  Similarity=0.463  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499          246 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL  325 (340)
Q Consensus       246 e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L  325 (340)
                      |+|-+|||++||.+|+-+|.|||+++++||.++..|..||+.|+.+.+.|+..++.|..+|.+|..+|+.+.  +.|.+|
T Consensus        67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~--~~l~~~  144 (292)
T KOG4005|consen   67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR--QELAEL  144 (292)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHhh
Confidence            446899999999999999999999999999999999999999999999999999999999999999999887  555555


Q ss_pred             hh
Q 019499          326 EQ  327 (340)
Q Consensus       326 ~~  327 (340)
                      .+
T Consensus       145 ~~  146 (292)
T KOG4005|consen  145 KQ  146 (292)
T ss_pred             HH
Confidence            54

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.20  E-value=5.4e-11  Score=121.78  Aligned_cols=71  Identities=39%  Similarity=0.468  Sum_probs=67.9

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          241 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  311 (340)
Q Consensus       241 ~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  311 (340)
                      ..|.+-.||+.|+++|||||..||+|||+|++.||.++..|..||+.|+.|...|++++..|..||..|+-
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv  344 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV  344 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence            46889999999999999999999999999999999999999999999999999999999999999998873

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.19  E-value=2.9e-11  Score=122.22  Aligned_cols=76  Identities=28%  Similarity=0.431  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      -+|+.+||.|||+||++||+.||+|||+|++.||.||....+||++|++++..|+.++..|..+.+.|...+.+..
T Consensus       245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~a  320 (472)
T KOG0709|consen  245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVA  320 (472)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcc
Confidence            4889999999999999999999999999999999999999999999999998887777777777777766655543

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.17  E-value=1.7e-10  Score=85.23  Aligned_cols=50  Identities=50%  Similarity=0.747  Sum_probs=46.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE  298 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e  298 (340)
                      ++.+|+ +||+||++||.||++++++|+.+|..|+.+|..|+.+|..|+.|
T Consensus         5 ~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    5 KRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            467777 99999999999999999999999999999999999999888754

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.72  E-value=5.6e-08  Score=92.64  Aligned_cols=69  Identities=30%  Similarity=0.482  Sum_probs=60.4

Q ss_pred             CCchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          236 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  304 (340)
Q Consensus       236 ~~~~~~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~  304 (340)
                      .++.+++++..+|-+|.+++||++|.+||.||.++|.+||++|..|..+|..|-.++..|++...+++.
T Consensus       194 ispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~  262 (279)
T KOG0837|consen  194 ISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ  262 (279)
T ss_pred             CCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            355667788888888889999999999999999999999999999999999999999888776665554

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.48  E-value=1.9e-09  Score=87.70  Aligned_cols=67  Identities=33%  Similarity=0.484  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  309 (340)
Q Consensus       243 DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  309 (340)
                      +..++|..||+.+||.+|++||.||.+++++|+.++..|..+...|..++..|+.++..|+..+..|
T Consensus        25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L   91 (92)
T PF03131_consen   25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL   91 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4477899999999999999999999999999999999888888888777777766666655555444

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=98.35  E-value=2.5e-06  Score=82.66  Aligned_cols=57  Identities=32%  Similarity=0.455  Sum_probs=49.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE  305 (340)
Q Consensus       249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E  305 (340)
                      ..|.+++|+.||-|+|.||+++.|.|+.+++.|+.+|.+|+.++..|.+|+..|+.-
T Consensus       228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql  284 (294)
T KOG4571|consen  228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQL  284 (294)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344467778889999999999999999999999999999999998887777776643

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=98.16  E-value=7.3e-06  Score=78.75  Aligned_cols=59  Identities=29%  Similarity=0.476  Sum_probs=50.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN  306 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN  306 (340)
                      +...|+.+|-+|+||||.++|...+++..||..|+.||+.|+.+|..|+.++..|+.-.
T Consensus       194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~  252 (269)
T KOG3119|consen  194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF  252 (269)
T ss_pred             HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667778999999999999999999999999999999999999977766666655443

>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain

Probab=97.99  E-value=3.3e-05  Score=71.10  Aligned_cols=134  Identities=19%  Similarity=0.321  Sum_probs=80.2

Q ss_pred             chhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCcCCCCCCCC--CC--CC-----
Q 019499           30 DWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMAT--TP--TA-----  100 (340)
Q Consensus        30 dW~~smQaYy~~~~~pp~~~~s~vas~~phPYmWg~q~~~~ppygtp~PY~a~y~~Gg~yaHP~mp~--~~--~~-----  100 (340)
                      |=. ....|.- -...=.||.+.    ++||||-....+    =.+||||+    ||.  +||+||+  +|  .+     
T Consensus        22 ~~~-~~~~ypD-Ws~mQAYyg~~----~~p~~f~s~va~----sp~phPYM----WG~--~q~mmPPYGtP~pY~A~Yph   85 (189)
T PF07777_consen   22 DQP-TPHVYPD-WSAMQAYYGPG----APPPYFNSAVAS----SPQPHPYM----WGP--QQPMMPPYGTPVPYPAMYPH   85 (189)
T ss_pred             CCC-CCccCCc-cHhhhhccCCC----CCCcccCcccCC----CCCCCCcc----cCC--CccccCCCCCCCCCccccCC
Confidence            444 3666643 22344688873    778998877654    13589999    999  8999986  22  11     


Q ss_pred             --------CC-----------CCCCCCCCCCcccccccccccCCCCCCCCCCccccccCCCCC--CCcccccCCCCCCCC
Q 019499          101 --------AP-----------TNTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGND--GVSQSAESGSDGSSD  159 (340)
Q Consensus       101 --------~~-----------~~~e~~~k~~~~k~~~~~kk~Kg~~G~k~~~~gk~~~gs~~~--~~s~S~esgs~gSsd  159 (340)
                              .+           .++++.+....+.|-.+   .|.+++ |+....|+++|...+  ..-+.+++++..+..
T Consensus        86 GgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p---~Kss~~-kd~~~~KksKg~~g~~a~s~~n~~~gk~~~~s  161 (189)
T PF07777_consen   86 GGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDP---GKSSGN-KDKGSMKKSKGFDGGLAMSIKNGESGKTSGSS  161 (189)
T ss_pred             CccccCCCCCcccccCCCcccccccccCCCCccccccc---ccCcCc-cccccccccccccccceeeccCCccCccccCC
Confidence                    11           11122222222222111   133333 555566777776632  234567888887778


Q ss_pred             cCcCCCccchhhhccccCCCCCCC
Q 019499          160 ASDENGNQQEFARANTENNTAEAV  183 (340)
Q Consensus       160 gsd~ns~~~~s~~~~~~~~~~~~~  183 (340)
                      ++|+.+|..+|+++.+++++++++
T Consensus       162 ~n~~~Sqs~eSgsegSSdgSD~Nt  185 (189)
T PF07777_consen  162 ANDGSSQSSESGSEGSSDGSDGNT  185 (189)
T ss_pred             CCCccCccccccccccccCcCccc
Confidence            899999988888877778777654

It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.68  E-value=0.00037  Score=60.79  Aligned_cols=68  Identities=26%  Similarity=0.425  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      -.+|..||-++||=-|+-||-|+-+.-++|       +.++..|..+|+.|++++..+..|...|+.+++.|..-
T Consensus        50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eL-------E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~  117 (135)
T KOG4196|consen   50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHEL-------EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS  117 (135)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            457888899999999999999998766655       55677777788888888888888999999999888743

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=97.64  E-value=9.4e-05  Score=77.96  Aligned_cols=73  Identities=21%  Similarity=0.305  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCc
Q 019499          247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED-LSRLCGP  319 (340)
Q Consensus       247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e-L~~L~g~  319 (340)
                      +|-.||+=+||.||++||+||..-|..||.+|+.|+.|-+.|.+|-..+...+..++.+...|-.+ +..|+.+
T Consensus       489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~  562 (604)
T KOG3863|consen  489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDE  562 (604)
T ss_pred             hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            455678889999999999999999999999999999999998888888877777777777777543 3444433

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.85  E-value=0.0053  Score=51.89  Aligned_cols=50  Identities=30%  Similarity=0.436  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +.+.+|+.++..|..+...|+.++..|-+|+..|+.||..|+++|..+..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56889999999999999999999999999999999999999999999864

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.82  E-value=0.016  Score=54.14  Aligned_cols=48  Identities=13%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      .++.+++++..+..|+.+|++|++++..++.+++.|+.+|..|+..+.
T Consensus       123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666677777777777777777777777777777777776543

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.65  E-value=0.0092  Score=50.81  Aligned_cols=49  Identities=29%  Similarity=0.396  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..+.+|++++..|..+...|+..+..|-+|+..|+.||..||++|.++.
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4678899999999999999999999999999999999999999999873

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.57  E-value=0.016  Score=45.13  Aligned_cols=57  Identities=30%  Similarity=0.405  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      +.++.|=..++.|+.||..|+.++..+..+...|...|..-+.+|+.+-  ..+..|++
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI--~RLk~leq   63 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI--TRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhcc
Confidence            4567777777888888888888888888888888888888888888876  66666655

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.52  E-value=0.017  Score=45.66  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEE  298 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e  298 (340)
                      ++.||.+|..+-..+..|+.++..|+++
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~   33 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEK   33 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445554444444333333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.51  E-value=0.0095  Score=53.82  Aligned_cols=52  Identities=23%  Similarity=0.312  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCC
Q 019499          277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP  330 (340)
Q Consensus       277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~  330 (340)
                      ....|+.||..|+.++..|+++++.|+.||..|..++..+.  ++-..|..+|+
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~--eDY~~L~~Im~  149 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE--EDYQTLIDIMD  149 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            46667778888888888888888888888888888887776  66666666554

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=96.48  E-value=0.016  Score=46.77  Aligned_cols=49  Identities=31%  Similarity=0.413  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      -++|..++..|+.....|..+++..+++|++|+.||.-|..-|..|...
T Consensus        18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~   66 (80)
T PF10224_consen   18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS   66 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3677788889999999999999999999999999999999999998643

The exact function is unknown.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.31  E-value=0.021  Score=45.25  Aligned_cols=57  Identities=28%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  328 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~  328 (340)
                      -|.-|+-+|+.|+.+|..|..++..++...+.|+.||..|+.+-...+  +.|+.|.-.
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ--erlrsLLGk   75 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ--ERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence            345567788888888888888888888888888888888877766555  555555433

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=96.12  E-value=0.056  Score=51.88  Aligned_cols=59  Identities=25%  Similarity=0.268  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      .++.+|+++-+.|..||..|+.....|-.+.++|..+...|+++|..+......-++-.
T Consensus        97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~  155 (292)
T KOG4005|consen   97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVI  155 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHH
Confidence            45789999999999999999999999999999999999999999999876655555433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=96.00  E-value=0.04  Score=44.45  Aligned_cols=59  Identities=29%  Similarity=0.335  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  329 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~  329 (340)
                      +.|.-|+-+|+.|+.+|..|..++..++.....|..||..|+.+....+  ++|+.|.-.+
T Consensus        18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq--erLr~LLGkm   76 (79)
T PRK15422         18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLGRM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh
Confidence            3455677778888888888888877766666667777777777666665  5565554433

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.97  E-value=0.052  Score=42.93  Aligned_cols=47  Identities=36%  Similarity=0.464  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .+.-|+.+++.|+.+|..|..+...|+.++++|+.|-..+..+|..|
T Consensus        19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555444

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=95.82  E-value=0.00036  Score=70.39  Aligned_cols=67  Identities=31%  Similarity=0.378  Sum_probs=58.6

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          240 WIQDERELKRQKRKQSNRESARR---SRLRKQAECEELQARVETLS-NENRNLRDELQRLSEECEKLTSEN  306 (340)
Q Consensus       240 ~~~DE~e~KR~rRk~~NRESARR---SR~RKq~~leeLE~rv~~Le-~EN~~Lr~el~~L~~e~~~L~~EN  306 (340)
                      .+..+.+.|+.+|+++|+.+|.+   ||.|++....+|+.+|+.|+ .++..|..+|..|+++.+.|+.+.
T Consensus       146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l  216 (395)
T KOG1414|consen  146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKEL  216 (395)
T ss_pred             CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHH
Confidence            34577778899999999999999   99999999999999999999 999998888888877777776554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.57  E-value=0.18  Score=47.21  Aligned_cols=55  Identities=15%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA  321 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~  321 (340)
                      -+++..+|+++++.++.+..+|..+...|+++++.++.|+..|+.++..+.....
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4477788888888899999999999999999999999999999999988875443

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.57  E-value=0.035  Score=40.17  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      |+.+...|+...+.|+.+++.|..||..|++++..|.
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~   39 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK   39 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555666666666666666666666666554

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=95.49  E-value=0.31  Score=39.86  Aligned_cols=75  Identities=21%  Similarity=0.329  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       243 DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      -+.-++|..+++.+=|++=..|.-+.....+|+.+++.|..+...|-++|.....++..|+.-|..+..+|....
T Consensus         6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~   80 (89)
T PF13747_consen    6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345577888888888888888888888889999999999999999999999999999999999999999998765

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=95.49  E-value=0.066  Score=55.66  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..+++||++++.|+.|.+.|..+...++++++.|+.||++|+.+++.+.
T Consensus        76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~  124 (475)
T PRK13729         76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG  124 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3678999999999999999999999999999999999999999996543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.37  E-value=0.21  Score=45.56  Aligned_cols=71  Identities=21%  Similarity=0.186  Sum_probs=55.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      +.+.....+..-+........++.+++.-++.|..|...|.-++..|.+++..|+.||..|-+++.+..+.
T Consensus       117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~  187 (194)
T PF08614_consen  117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ  187 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444555555556667778888888888999999999999999999999999999999888776543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=95.34  E-value=0.088  Score=40.93  Aligned_cols=51  Identities=18%  Similarity=0.287  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      .+++++||.++.-++.-..+|...|....+++..|+.+...|..+|..+..
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   53 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED   53 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            367899999999999999999999999999999999999999999999863

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=95.32  E-value=0.09  Score=41.01  Aligned_cols=47  Identities=21%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +..|+.+|+.|-..+..|+.+...|+.+...+..|+..|.+++..-.
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar   48 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR   48 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999887654

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.30  E-value=0.1  Score=41.45  Aligned_cols=53  Identities=36%  Similarity=0.453  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      =|-++++|.++-..|..|.+.++...+.|..++++|+.|...+.++|+.|-|.
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk   75 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46689999999999999999999999999999999999999999999988763

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=95.21  E-value=0.08  Score=45.14  Aligned_cols=47  Identities=28%  Similarity=0.407  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      ..+..|+.++-.|-++...|++.+..|-+|+..|+.||..||++|..
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45788999999999999999999999999999999999999999988

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=95.06  E-value=0.13  Score=49.14  Aligned_cols=54  Identities=31%  Similarity=0.403  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +--+..++++..+-+.|..+|.+|..+++.+++++..|+.||.+|.+.+..+.|
T Consensus       138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~  191 (290)
T COG4026         138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG  191 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            333445666666666777777777777777778888888888888888887764

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=94.85  E-value=0.12  Score=37.42  Aligned_cols=42  Identities=31%  Similarity=0.461  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      +||...+.|+.....|+.+.+.|.++.+.|+.|...|+.+|.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            478888888888888888888888888999999999888764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=94.78  E-value=0.34  Score=47.20  Aligned_cols=78  Identities=21%  Similarity=0.219  Sum_probs=52.0

Q ss_pred             HHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 019499          252 RKQSNRESARRSRLRKQAE-------CEELQARVETLSNENRNLRDELQRLSEE-----------CEKLTSENNSIKEDL  313 (340)
Q Consensus       252 Rk~~NRESARRSR~RKq~~-------leeLE~rv~~Le~EN~~Lr~el~~L~~e-----------~~~L~~EN~~Lk~eL  313 (340)
                      +-+.-|+--+.+..--.++       +.+|+.+...|+.+|+.|+-++..++++           ...|+.+|..+++.+
T Consensus        28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik  107 (333)
T KOG1853|consen   28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK  107 (333)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344454444444444444       4455555555566666666666666553           346888899999999


Q ss_pred             HHhcCchhhhhhhhcCCC
Q 019499          314 SRLCGPEAVANLEQSNPT  331 (340)
Q Consensus       314 ~~L~g~~~~~~L~~~~~~  331 (340)
                      .+|+  ..|+.|+|.||+
T Consensus       108 eql~--kyiReLEQaNDd  123 (333)
T KOG1853|consen  108 EQLR--KYIRELEQANDD  123 (333)
T ss_pred             HHHH--HHHHHHHHhccH
Confidence            9998  899999999987

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.68  E-value=0.64  Score=41.23  Aligned_cols=69  Identities=30%  Similarity=0.315  Sum_probs=56.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .....+.|++.+-+--.-+++.|+.|+.++..+..+...|..++..|+.+...|..+....+.++..|.
T Consensus        32 eLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   32 ELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566788888888888888888999988888888888888888888888888888888887777775

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.68  E-value=0.51  Score=41.19  Aligned_cols=70  Identities=24%  Similarity=0.315  Sum_probs=43.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .+..|-...|+.......++...++.|+..++.|+.++..+..++..++.....|..++..+...+....
T Consensus        45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k  114 (151)
T PF11559_consen   45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK  114 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666666677777777777777777776666666666666665555555555555444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.64  E-value=0.18  Score=40.75  Aligned_cols=51  Identities=33%  Similarity=0.462  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      |-++++|+.+-..|..++..++..-..|.+++++|+.|...+.++|..|-|
T Consensus        24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422         24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888888888888888888888888888888888777765

>PRK04325 hypothetical protein; Provisional

Probab=94.59  E-value=0.25  Score=39.11  Aligned_cols=49  Identities=10%  Similarity=0.124  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +++++||.++.-++.-..+|-..|...++++..|+.+.+.|..+|..+.
T Consensus         9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325          9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3489999999999999999999999999999999999999999998875

>PRK02793 phi X174 lysis protein; Provisional

Probab=94.58  E-value=0.25  Score=38.97  Aligned_cols=49  Identities=20%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +++.+||.++.-++.-..+|-+.|...++++..|+.+.+.|..+|..+.
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   56 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ   56 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5788889999988888889999999999999999999888888888875

>PRK00295 hypothetical protein; Provisional

Probab=94.57  E-value=0.26  Score=38.39  Aligned_cols=49  Identities=16%  Similarity=0.199  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +++.+||.++.-++.-..+|-..|...++++..|+.+.+.|..+|..+.
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4589999999999999999999999999999999999999999998875

>PRK02119 hypothetical protein; Provisional

Probab=94.54  E-value=0.26  Score=38.99  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .+++.+||.++.-++.-..+|-..|...++++..|+.+.+.|..+|..+.
T Consensus         8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35678888888888888888888888888888888888888888888765

>PRK00736 hypothetical protein; Provisional

Probab=94.52  E-value=0.27  Score=38.36  Aligned_cols=49  Identities=20%  Similarity=0.273  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +++++||.++..++.-..+|-..|....+++..|+.+...|..+|..+.
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4599999999999999999999999999999999999999999998875

>PRK04406 hypothetical protein; Provisional

Probab=94.36  E-value=0.31  Score=38.81  Aligned_cols=49  Identities=10%  Similarity=0.153  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +++.+||.++..++.-+.+|-..|...++++..|+.+.+.|..+|..+.
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4677888888888888888888888888888888888888888777765

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=94.13  E-value=0.33  Score=45.92  Aligned_cols=51  Identities=20%  Similarity=0.356  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      .+.++++++.+.+++.++.++..|+++.+.+..|+..|..|++.|++++..
T Consensus       161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~  211 (216)
T KOG1962|consen  161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES  211 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence            344455566666666777777778888888888888888888888888764

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=94.11  E-value=0.43  Score=41.97  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .+|..+...|.++++.|+.||.+++.++-.+.
T Consensus        77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k  108 (135)
T KOG4196|consen   77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK  108 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777777777777888888888877777765

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=94.10  E-value=0.25  Score=41.88  Aligned_cols=53  Identities=30%  Similarity=0.446  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      +|=.++..|+.....|..++..|+..+..|..||.+|+.+...|+  +.|..+.+
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr--~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR--ERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence            456778888888888999999999999999999999998888888  66666655

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK11637 AmiB activator; Provisional

Probab=94.09  E-value=0.65  Score=47.13  Aligned_cols=57  Identities=12%  Similarity=0.227  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ++....-+.+++.|+.++..++.+...+..+|..++.++..|..+...|+.+|..+.
T Consensus        67 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         67 QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455666666666666666666666666666666666666666666655543

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=94.06  E-value=0.08  Score=48.15  Aligned_cols=43  Identities=28%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      |+++|.++.+--++|.-|..||    .|.+.|+.++++||.||.+|.
T Consensus         2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLK   44 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLK   44 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH-----------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            5777777777777777776666    334445555555555555444

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=94.05  E-value=0.11  Score=50.38  Aligned_cols=40  Identities=35%  Similarity=0.450  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 019499          277 RVETLSNENRNLRDELQRLSEECE----KLTSENNSIKEDLSRL  316 (340)
Q Consensus       277 rv~~Le~EN~~Lr~el~~L~~e~~----~L~~EN~~Lk~eL~~L  316 (340)
                      .+..|.+||.+|++|+..|+.+.+    .|+.||++||+.|.--
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~  110 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP  110 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            344467777777777766644433    4899999999877654

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=93.97  E-value=0.61  Score=49.50  Aligned_cols=64  Identities=27%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +++......+....-+.+++.|+..+...+.++..|..+...|....+.|..|+..|+.++.++
T Consensus       155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~  218 (546)
T PF07888_consen  155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444445555555555555555555555555555554444444444444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=93.71  E-value=0.85  Score=46.26  Aligned_cols=43  Identities=12%  Similarity=0.199  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      .+..++.++..++.+...+..+|..|+.++..++.+...++..
T Consensus        83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444433333

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.65  E-value=0.47  Score=41.41  Aligned_cols=49  Identities=24%  Similarity=0.402  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +..++.|+.+++.++.++..+..+...|+.++..+...+..+++++..+
T Consensus        72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl  120 (151)
T PF11559_consen   72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL  120 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555554444444444444444444444444444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.62  E-value=0.92  Score=42.58  Aligned_cols=50  Identities=28%  Similarity=0.375  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      ...+.++++++.++..|+.+...++.++..+++++..++.++...+..|.
T Consensus        59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555556555555555555555555555555555555444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK00846 hypothetical protein; Provisional

Probab=93.59  E-value=0.48  Score=38.11  Aligned_cols=50  Identities=18%  Similarity=0.181  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .+++++||.++.-.+.-..+|-..|...+..+..|+.+.+.|..+|+.+.
T Consensus        12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36678888888888888888888888888888888888888888888776

>PRK04406 hypothetical protein; Provisional

Probab=93.34  E-value=0.78  Score=36.50  Aligned_cols=56  Identities=14%  Similarity=0.261  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  328 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~  328 (340)
                      ++.|+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|.  +.+..+...
T Consensus         6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~~   61 (75)
T PRK04406          6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMDSS   61 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence            45799999999999999999999999999999999999999999996  667766643

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=93.02  E-value=0.017  Score=58.41  Aligned_cols=56  Identities=32%  Similarity=0.399  Sum_probs=45.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      +.|=..+||.||-|||.|||.++..|+.+.+.+..+|..|.      ..+++.|..++..+.
T Consensus       286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~------~~~~~~l~~~~~~~~  341 (395)
T KOG1414|consen  286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL------LNEVELLRNEVKQLS  341 (395)
T ss_pred             hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc------cchhhHHHhHHhhhc
Confidence            35558999999999999999999999999999999999888      233345555555543

>PRK02119 hypothetical protein; Provisional

Probab=93.00  E-value=0.91  Score=35.87  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  328 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~  328 (340)
                      ++..|+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|.  +.+..+...
T Consensus         3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~~~   59 (73)
T PRK02119          3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQPS   59 (73)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence            578899999999999999999999999999999999999999999997  667776644

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=93.00  E-value=0.43  Score=46.12  Aligned_cols=54  Identities=17%  Similarity=0.334  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .++|++...+-+++..+.-+....+++.++..|.+|++.|+.++.+|+.+|..|
T Consensus       195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~  248 (269)
T KOG3119|consen  195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL  248 (269)
T ss_pred             HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444433333333334444444444444444444444444444444

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=0.35  Score=51.74  Aligned_cols=46  Identities=35%  Similarity=0.526  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      .++..|+.+|+.|+.||..|+.++..|+.+++.|+.+..+++.++.
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~  467 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR  467 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777777777777777777777777777776654

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=92.92  E-value=0.67  Score=44.13  Aligned_cols=39  Identities=31%  Similarity=0.420  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 019499          278 VETLSNENRNLRDELQRLSEECE---KLTSENNSIKEDLSRL  316 (340)
Q Consensus       278 v~~Le~EN~~Lr~el~~L~~e~~---~L~~EN~~Lk~eL~~L  316 (340)
                      ...|.+||.+|++|+..|+.+..   .|+.||.+|++.|.-.
T Consensus        71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~  112 (276)
T PRK13922         71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK  112 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            34455555555555555555444   7789999999877643

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=92.86  E-value=0.51  Score=45.28  Aligned_cols=42  Identities=29%  Similarity=0.445  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      +|..+++.+..||.+|+.++..|+.+++.++.+..+|..+..
T Consensus       139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s  180 (290)
T COG4026         139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS  180 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444443333333333333333333333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.80  E-value=1.8  Score=40.91  Aligned_cols=54  Identities=22%  Similarity=0.295  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      -+..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+...-..|
T Consensus        50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566666667777777777777666666666666666666655444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>smart00338 BRLZ basic region leucin zipper

Probab=92.79  E-value=1  Score=34.08  Aligned_cols=40  Identities=33%  Similarity=0.493  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      ...+..|+.+...|..++..|+.++..|+.|+..|+.++.
T Consensus        25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338       25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456677777777777777777777777777777776653

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=92.64  E-value=0.65  Score=42.68  Aligned_cols=18  Identities=39%  Similarity=0.564  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 019499          297 EECEKLTSENNSIKEDLS  314 (340)
Q Consensus       297 ~e~~~L~~EN~~Lk~eL~  314 (340)
                      ++++.|+.++..|+.+|.
T Consensus       110 ~~l~~l~~~~~~l~~el~  127 (188)
T PF03962_consen  110 EELEELKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444444

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=92.61  E-value=0.41  Score=37.57  Aligned_cols=44  Identities=27%  Similarity=0.472  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499          283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  326 (340)
Q Consensus       283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~  326 (340)
                      .....+..++..++.+++.|+.||..|+.++..|..++.+..+-
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~A   67 (85)
T TIGR02209        24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIA   67 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            34445666666666666777777777777777776666665443

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.59  E-value=0.93  Score=49.49  Aligned_cols=42  Identities=29%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      .|.+.+|+.+|+.|...|+.++...++++..|+.|...|+..
T Consensus       540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677778888888888888888888888887777666654

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.59  E-value=1.1  Score=49.44  Aligned_cols=12  Identities=25%  Similarity=0.379  Sum_probs=5.7

Q ss_pred             hhhhcCCCCCCC
Q 019499           35 MQAFYGAGATPP   46 (340)
Q Consensus        35 mQaYy~~~~~pp   46 (340)
                      +|.|-=|-+.||
T Consensus        82 LqG~~lP~~LPP   93 (1118)
T KOG1029|consen   82 LQGIQLPPVLPP   93 (1118)
T ss_pred             hcCCcCCCCCCh
Confidence            355544444444

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=92.58  E-value=0.33  Score=37.17  Aligned_cols=25  Identities=44%  Similarity=0.741  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRL  295 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L  295 (340)
                      +.+|+.+++.|+.+|..|..+++.|
T Consensus        26 i~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   26 IAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444444333

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=92.40  E-value=0.56  Score=45.06  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      ||.|+..+..++..|+.|++.|+..|-.|=++++=|+.
T Consensus        98 LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS  135 (248)
T PF08172_consen   98 LEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS  135 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444445555555555667778888888888777653

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=92.31  E-value=0.68  Score=39.54  Aligned_cols=51  Identities=24%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL  325 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L  325 (340)
                      +|=.++..|+.....|..++..|+..+..|..||..|+.+-..|+  ..|..+
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr--~~l~~~   55 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR--ERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence            445566667777777777777777777777777777777766666  555554

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=92.30  E-value=0.46  Score=42.26  Aligned_cols=52  Identities=33%  Similarity=0.431  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          267 KQAECEELQARVETLSNENRNLRDEL--QRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el--~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      -++++.+|+.++..|+.|...|...+  ..|..++..|+.|+..|..+|..|+.
T Consensus        84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556666777777777766666655  56677788888888888888888775

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.27  E-value=2  Score=41.27  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          257 RESARRSRLRKQAECEELQARVETLSNENRNLRDEL  292 (340)
Q Consensus       257 RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el  292 (340)
                      .+.+++.=.-++.++++|+.+|..++.+...++.++
T Consensus        40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~   75 (239)
T COG1579          40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERI   75 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444433

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=92.14  E-value=0.52  Score=41.96  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          272 EELQARVETLSNENRNLRDELQRLS  296 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~  296 (340)
                      .+|+.++..|+.++..|+.++..|.
T Consensus        82 ~~L~~el~~l~~~~k~l~~eL~~L~  106 (169)
T PF07106_consen   82 KELREELAELKKEVKSLEAELASLS  106 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333333333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=92.07  E-value=0.77  Score=49.17  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  329 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~  329 (340)
                      ..++.+||.+.+.|..|.+++..+++.|++.+...+.|..+|+.+|++-+  ..++.|.+.+
T Consensus        92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq--~~~~El~~~n  151 (907)
T KOG2264|consen   92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ--RQLEELRETN  151 (907)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH--HHHHHHHhhc
Confidence            45788888888889999999999999999988888888888888887765  4555555443

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=92.04  E-value=0.68  Score=39.25  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      -.+|-.|+.-...|.++++.+++|+.+|+.||+-|-.-|+.|...
T Consensus        62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa  106 (120)
T KOG3650|consen   62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence            445555666667778888889999999999999999998888643

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=91.93  E-value=0.65  Score=39.00  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEE  298 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e  298 (340)
                      .+.++++++++++++.|+.+|..|+.++..|+..
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~   63 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG   63 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            3455566777777777777777777777777653

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.91  E-value=3.1  Score=37.25  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +..+.+.+++++.++..++.+..+...|++++..++.+++.++.+...+++....+.
T Consensus       122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  178 (191)
T PF04156_consen  122 RELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLE  178 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555554444444555555555555544444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=91.86  E-value=1.2  Score=34.98  Aligned_cols=47  Identities=32%  Similarity=0.459  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          270 ECEELQARVETLSNENRNLRDE-------LQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~e-------l~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +++.|.+++...+.+|..|+.+       +..+-.++.+|+.||..|+.+|..+
T Consensus        13 rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   13 RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555555555554444       4555555555566666665555443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=91.85  E-value=0.58  Score=48.82  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      |+.+..+|.++.+.|+++.++|......|..+|..
T Consensus       107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~  141 (472)
T TIGR03752       107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG  141 (472)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455555556666666666666666666555543

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK02793 phi X174 lysis protein; Provisional

Probab=91.85  E-value=1.5  Score=34.47  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  329 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~  329 (340)
                      .+|+.|+..|+....-+..-|+.|.+.+.....+...|+.+|..|.  +.+..+....
T Consensus         4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~~~~   59 (72)
T PRK02793          4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQPSN   59 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence            4589999999999999999999999999999999999999999997  6777776544

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.82  E-value=3  Score=38.72  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=45.1

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT  303 (340)
Q Consensus       242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~  303 (340)
                      .-+++....++.+++-+.-+.+-..-+..+..++.++..|+.+++.|..++..|..+...|.
T Consensus        66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667777777777777766666777777777777788877777777777777766665

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.77  E-value=1.4  Score=48.73  Aligned_cols=16  Identities=25%  Similarity=0.389  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHh
Q 019499          301 KLTSENNSIKEDLSRL  316 (340)
Q Consensus       301 ~L~~EN~~Lk~eL~~L  316 (340)
                      .|..|...|..++.+|
T Consensus       441 ql~~eletLn~k~qql  456 (1118)
T KOG1029|consen  441 QLQQELETLNFKLQQL  456 (1118)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333344443333

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=91.76  E-value=2.2  Score=32.14  Aligned_cols=38  Identities=29%  Similarity=0.386  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      ..++.|+.+...|..++..|+.++..|..++..|+.++
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34455555555555555555555555555555555443

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.76  E-value=2.9  Score=39.49  Aligned_cols=50  Identities=22%  Similarity=0.255  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .++..+|..+++.|+.|.+.|+..++.|+..+..++.+...|..++..+.
T Consensus        48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666666666666666666666666666666654

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]

Probab=91.74  E-value=0.24  Score=45.59  Aligned_cols=43  Identities=30%  Similarity=0.407  Sum_probs=26.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS  296 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~  296 (340)
                      .|.+|+++++      -+.++.++.+|+.+++.|+.+.++|+..+..|-
T Consensus        91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~  133 (181)
T KOG3335|consen   91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH  133 (181)
T ss_pred             HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3666666665      455666777777777777775555555554443

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.64  E-value=1.1  Score=34.70  Aligned_cols=52  Identities=21%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  326 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~  326 (340)
                      .|+.|+..|+....-+..-|+.|.+.+.....+...|+.+|..|.  +.|+.+.
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~   52 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR--ERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence            478899999999999999999999999999999999999999988  7777766

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.61  E-value=0.95  Score=39.92  Aligned_cols=42  Identities=33%  Similarity=0.548  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      +.|+.++..|+.++..+-.+|..|+..+..|..+...|..+|
T Consensus        17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l   58 (143)
T PF12718_consen   17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL   58 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444443333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=91.59  E-value=1.4  Score=42.26  Aligned_cols=46  Identities=15%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +.+|..+++.|+.|+.+||-+|+.+..++++|....+.|-.+|..+
T Consensus        56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777777777777777777777777766666554

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.57  E-value=1.6  Score=45.21  Aligned_cols=49  Identities=35%  Similarity=0.422  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      -+++-|+.++..|+.||.+||..+..|+..|++|..+..++..+|..+.
T Consensus       297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr  345 (502)
T KOG0982|consen  297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR  345 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            3456667788888888888888888888888888888777777776654

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=91.53  E-value=0.81  Score=37.57  Aligned_cols=38  Identities=37%  Similarity=0.581  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc
Q 019499          280 TLSNENRNLRDELQRLSEE------CEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       280 ~Le~EN~~Lr~el~~L~~e------~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .|..+|..|+.+|..|+.+      ......||.+|++++..|+
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~   64 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ   64 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666643      3456677777777777664

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.49  E-value=1.6  Score=45.05  Aligned_cols=73  Identities=19%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE  320 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~  320 (340)
                      ++++-.+++=+.-.+.....++....|+.++..|+.++..|..+|......+..++..+..+...|..|.+.+
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4455555555566666677778888999999999999999999998888888888888888888888887655

>PRK00846 hypothetical protein; Provisional

Probab=91.38  E-value=1.4  Score=35.56  Aligned_cols=58  Identities=19%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT  331 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~  331 (340)
                      +.|+.|+..|+....-...-|+.|.+.+.....+...|+.+|..|.  +.|..++..+.+
T Consensus         9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~~s~~~   66 (77)
T PRK00846          9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFA   66 (77)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccCC
Confidence            6789999999999999999999999999999999999999999998  788888766544

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=91.22  E-value=0.8  Score=48.53  Aligned_cols=38  Identities=32%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      ++--..|..+|..|..||+.|+.||..||.+|..|..+
T Consensus       301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E  338 (655)
T KOG4343|consen  301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE  338 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            34456688888888888999999999999998888653

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=91.11  E-value=1.7  Score=34.32  Aligned_cols=59  Identities=22%  Similarity=0.378  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  326 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~  326 (340)
                      -|.+.|..|..+-+.|......+...|..|+.++..+..+...|+.++..+.  ..+..|.
T Consensus         9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e--~~~~~l~   67 (74)
T PF12329_consen    9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE--KELESLE   67 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            3566777777777777777777777777777777777777777777776665  3444443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=91.09  E-value=2.5  Score=39.16  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=21.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          250 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL  292 (340)
Q Consensus       250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el  292 (340)
                      .+.++.+..+-+..+.+.+.+...|+.++..-+.++..|..++
T Consensus        91 l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i  133 (190)
T PF05266_consen   91 LRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEI  133 (190)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3444445555555555556665656555554433333333333

>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long)

Probab=90.97  E-value=0.67  Score=43.44  Aligned_cols=12  Identities=33%  Similarity=0.548  Sum_probs=5.0

Q ss_pred             HHHHHHHHHhcC
Q 019499          307 NSIKEDLSRLCG  318 (340)
Q Consensus       307 ~~Lk~eL~~L~g  318 (340)
                      ..|.+-|..|.+
T Consensus       159 ~~la~~ie~l~~  170 (200)
T PF07412_consen  159 QYLAEVIERLTG  170 (200)
T ss_dssp             HHHHHHHHHCC-
T ss_pred             HHHHHHHHHHhc
Confidence            344444445543

Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=90.89  E-value=1.8  Score=47.38  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC  299 (340)
Q Consensus       263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~  299 (340)
                      ||.|++    +||.++..|+.|.....+++..|+.++
T Consensus       543 ~r~r~~----~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  543 CRQRRR----QLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555553    344444444444444444444444433

; GO: 0016021 integral to membrane

>PF15294 Leu_zip: Leucine zipper

Probab=90.80  E-value=0.72  Score=45.18  Aligned_cols=45  Identities=22%  Similarity=0.454  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      |..++..|+.||..|+.++..++.+|.....|...|..+|..++-
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999874

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.67  E-value=3.3  Score=44.13  Aligned_cols=48  Identities=25%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ..+...+.+++.|+.++..|......|..+...|..++..++.+|..|
T Consensus       178 ~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L  225 (546)
T PF07888_consen  178 AELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL  225 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.52  E-value=3.7  Score=38.55  Aligned_cols=35  Identities=26%  Similarity=0.361  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC  299 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~  299 (340)
                      .+++.+++.|+.+++.++.++..++.++..+++.+
T Consensus        66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   66 EELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444433333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.50  E-value=2.2  Score=34.07  Aligned_cols=50  Identities=24%  Similarity=0.230  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      ++|.+||.++..-+.-..+|...|...+..++++..+.+.|-.++.+++.
T Consensus         8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~   57 (72)
T COG2900           8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            56788888888888888888888888888888888888888888888763

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=90.49  E-value=3  Score=37.93  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLT  303 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~  303 (340)
                      .++.+|+.+++.|+.||..|..++..++++++.|.
T Consensus       111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~  145 (161)
T TIGR02894       111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI  145 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444443

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=90.40  E-value=1.1  Score=43.11  Aligned_cols=43  Identities=19%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  311 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  311 (340)
                      ++..|||+++..+..++..|+.|++.|+..+.+|-...+-|..
T Consensus        93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS  135 (248)
T PF08172_consen   93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS  135 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3457888888889999999999999999998888888776654

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=90.35  E-value=2.3  Score=48.31  Aligned_cols=59  Identities=24%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          259 SARRSRLRKQAECEELQARV-ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       259 SARRSR~RKq~~leeLE~rv-~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..+++..+....+..++.+. ..|..+..++..+++.|+.+++.|+.++.+|++++..+.
T Consensus       369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~  428 (1074)
T KOG0250|consen  369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK  428 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555555555 445555555666666666666666666666666665553

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.32  E-value=3.1  Score=41.00  Aligned_cols=48  Identities=27%  Similarity=0.360  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .+++.|..++..+..++..++.++..|+.+++.|..+...+.+++.++
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l  256 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL  256 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555444444444444444444444444443333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=90.26  E-value=1.5  Score=37.34  Aligned_cols=53  Identities=11%  Similarity=0.217  Sum_probs=27.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE  305 (340)
Q Consensus       253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E  305 (340)
                      .+.-.|..+-||..=..+-++|+..+..|+.++..+.+++..|+.++..++..
T Consensus        21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~   73 (107)
T PF09304_consen   21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN   73 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555544445555555555555555555555555555555444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK04325 hypothetical protein; Provisional

Probab=90.20  E-value=1.8  Score=34.32  Aligned_cols=55  Identities=13%  Similarity=0.211  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      +..|+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|.  +.++.+..
T Consensus         4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~--~rl~~~~~   58 (74)
T PRK04325          4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY--QQMRDANP   58 (74)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence            46789999999999999999999999999999999999999999997  56666653

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=90.17  E-value=1.4  Score=33.49  Aligned_cols=38  Identities=18%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS  308 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~  308 (340)
                      +++||.++..|+.....|+.+++.|++.++.+..-.+.
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~   39 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD   39 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666555555555555555555444433

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=90.17  E-value=0.32  Score=37.32  Aligned_cols=41  Identities=32%  Similarity=0.558  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      .|.+.|+.+|..|.+++..|+.||..||..    ..++.+..|..
T Consensus        14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~----~~pe~l~q~~~   54 (59)
T PF01166_consen   14 EEVEVLKEQIAELEERNSQLEEENNLLKQN----ASPEQLAQLQS   54 (59)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CSSSSSTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHh
Confidence            455667777777777778888888877754    34555554443

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.15  E-value=1.6  Score=37.68  Aligned_cols=66  Identities=29%  Similarity=0.411  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 019499          244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR---DELQRLSEECEKLTSENNSI  309 (340)
Q Consensus       244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr---~el~~L~~e~~~L~~EN~~L  309 (340)
                      ++-....||+..-..+.+..-.|=.+.-+.|.+++-.|..+|..++   .++..|+.++..|......+
T Consensus        19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~   87 (120)
T PF12325_consen   19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL   87 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455655555555555555555555666666666666664442   33444444444444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.11  E-value=1.3  Score=43.18  Aligned_cols=58  Identities=17%  Similarity=0.305  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 019499          260 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLC  317 (340)
Q Consensus       260 ARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~----~EN~~Lk~eL~~L~  317 (340)
                      ++.-=.+....++++..+++.++.++.++..++..|+.++..|+    .++..|+.+++.++
T Consensus        50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq  111 (265)
T COG3883          50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ  111 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555666666666666666666666666666655544    33444445544443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=90.10  E-value=1.3  Score=43.83  Aligned_cols=73  Identities=29%  Similarity=0.317  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          244 ERELKRQKRKQSNR-----ESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       244 E~e~KR~rRk~~NR-----ESARRSR~RK-q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      |-|.|-.+-++.|.     .++..+..-- |..|++|++.+..|+.++.+...+++.+++.+..|+.|...|+++|...
T Consensus        88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r  166 (302)
T PF09738_consen   88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR  166 (302)
T ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566553     2444444443 5677888888888888888888888888888899999999999888765

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=90.03  E-value=5  Score=37.18  Aligned_cols=48  Identities=23%  Similarity=0.459  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      ...+.+|+.++..|+.+...|..+.+....++..|+.+...|.++|..
T Consensus       130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~  177 (190)
T PF05266_consen  130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN  177 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444443

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=89.99  E-value=1.5  Score=36.68  Aligned_cols=44  Identities=25%  Similarity=0.397  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          273 ELQARVETLSNENRNL--RDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       273 eLE~rv~~Le~EN~~L--r~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .++.|+..|+.+...|  +..+..|+-++..++-+.+.|.++|..+
T Consensus        46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v   91 (106)
T PF10805_consen   46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV   91 (106)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3355555555555555  5555555555555566666666555555

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.96  E-value=5.4  Score=39.46  Aligned_cols=42  Identities=29%  Similarity=0.409  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      +.+|+.+.+.|+.+-..+..+...++.+...+..|...|..+
T Consensus        80 l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q  121 (314)
T PF04111_consen   80 LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ  121 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=89.95  E-value=3.1  Score=31.71  Aligned_cols=47  Identities=19%  Similarity=0.352  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      +.+++|...|..|..+...|..++..|+.+.+..+.|-.+-..+|-.
T Consensus         3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN   49 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN   49 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35677777777777777777777777777777666666555555543

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=89.91  E-value=3.7  Score=39.46  Aligned_cols=50  Identities=36%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..++..|..++..++.+...|..++..|..+.+.|..+...|+.++..+.
T Consensus        88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e  137 (239)
T COG1579          88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE  137 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677777777777777777777777777777777666666666654

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=89.86  E-value=2.2  Score=33.48  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEE  298 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e  298 (340)
                      +..|+.+++.|..++......+..|..+
T Consensus         7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~E   34 (69)
T PF14197_consen    7 IATLRNRLDSLTRKNSVHEIENKRLRRE   34 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=89.86  E-value=1.4  Score=37.05  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTS  304 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~  304 (340)
                      +.+|+++++.++.+|.+|+.+...|+.+++.|+.
T Consensus        29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4455556666666666665555555555555554

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=89.80  E-value=7.3  Score=32.01  Aligned_cols=68  Identities=13%  Similarity=0.092  Sum_probs=58.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          250 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..+....++..+..=..|...+..||+++..|..|...-.+++-.+.+..+.|..|+..|+..+.+-.
T Consensus         5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~   72 (96)
T PF08647_consen    5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS   72 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence            44556667777778888999999999999999999999999999999999999999999998887654

>PRK00295 hypothetical protein; Provisional

Probab=89.72  E-value=2.3  Score=33.11  Aligned_cols=51  Identities=16%  Similarity=0.204  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499          274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  326 (340)
Q Consensus       274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~  326 (340)
                      |+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|.  +.+.++.
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~   53 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence            78899999999999999999999999999999999999999987  6677665

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=89.72  E-value=1.9  Score=35.57  Aligned_cols=44  Identities=23%  Similarity=0.371  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      |+-|-...+.+|+.|+.+|..|..++..|+.+++..+.|-..|-
T Consensus        40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll   83 (87)
T PF12709_consen   40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL   83 (87)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555566666666666666666666666666555555543

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=89.70  E-value=7.2  Score=33.59  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +-..|..++..++..|..|..+|..|-.+|..+
T Consensus        99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334566677777777777777777777777654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=89.54  E-value=1.5  Score=37.53  Aligned_cols=50  Identities=24%  Similarity=0.333  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN  324 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~  324 (340)
                      +|=.+|..|+.....|..++..|++.+..|..||..|+-+...|+  ++|..
T Consensus         5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR--~RL~~   54 (114)
T COG4467           5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR--ERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHhCC
Confidence            455678889999999999999999999999999999999999988  66665

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=89.54  E-value=2.2  Score=39.88  Aligned_cols=42  Identities=31%  Similarity=0.485  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      ..|..++..|+.+|..|..+.+.|+..+..|..++..|+.+|
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            345555555555555555555555555555555555555554

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=89.41  E-value=6.7  Score=34.84  Aligned_cols=49  Identities=37%  Similarity=0.500  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499          279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  329 (340)
Q Consensus       279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~  329 (340)
                      ..|+.+...|..++..|..++..|+.|+..|...|...+  ..|..|+..+
T Consensus        55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q--~kv~eLE~~~  103 (140)
T PF10473_consen   55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ--EKVSELESLN  103 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence            334444444444444455555555555555555555555  5566665543

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum

Probab=89.34  E-value=1.2  Score=36.04  Aligned_cols=46  Identities=26%  Similarity=0.494  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499          281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  326 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~  326 (340)
                      +..+...+..++..++++..+|..||..|+.|+..+..+..+..+-
T Consensus        33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA   78 (97)
T PF04999_consen   33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIA   78 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            4445677778888888888999999999999999888877776543

One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=89.29  E-value=2.3  Score=39.11  Aligned_cols=47  Identities=23%  Similarity=0.521  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..+|+.++..|+.++..|..++..|+.+++.++..+..+++...+.+
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~  168 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH  168 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888888888888888888888877777766655544443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=89.20  E-value=0.21  Score=42.02  Aligned_cols=48  Identities=29%  Similarity=0.472  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .+|+.|...+..|..+|..|+.++..|+.++..++.+...|+..|...
T Consensus        25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a   72 (131)
T PF05103_consen   25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA   72 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence            578899999999999999999999999999999888888888776543

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=89.20  E-value=1.4  Score=33.44  Aligned_cols=39  Identities=21%  Similarity=0.435  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +..|+.+...|...+..++.+++.|+.+...|.+-+++|
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l   40 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL   40 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555544443

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=89.02  E-value=4.1  Score=31.40  Aligned_cols=43  Identities=19%  Similarity=0.322  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..++...+..|-.+.++|......+..|..+...|+.++..++
T Consensus        17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen   17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444456666666666666666666666666666666666654

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=88.96  E-value=3.9  Score=41.37  Aligned_cols=52  Identities=21%  Similarity=0.481  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .|-+.+...||.-+..+++||..|.-+++.+.++|.+.+.|+..|..+|.+.
T Consensus       123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            4556667777888888999999999999999999988888888887666553

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=88.91  E-value=3.6  Score=37.85  Aligned_cols=48  Identities=27%  Similarity=0.477  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSE---------------ECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~---------------e~~~L~~EN~~Lk~eL~~  315 (340)
                      +..+.+|+.+++.|+.+...|+.+++.+.+               +++.|+.+|..|+.+|+.
T Consensus       126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~  188 (189)
T PF10211_consen  126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445555555555555555555544444444               444455555555555543

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=88.79  E-value=1.1  Score=44.40  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ...+...|..+|..-.+++.....|..+|..+|.+++
T Consensus       211 An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ  247 (306)
T PF04849_consen  211 ANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ  247 (306)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455666777777777777777777777777775

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=88.59  E-value=5.8  Score=37.14  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      -+.||...++ ...++..|+.+-..|..++-.+...|..|+.|...|+.+...+..
T Consensus       163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~  217 (221)
T PF05700_consen  163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE  217 (221)
T ss_pred             HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444433 677788888888888888888888888888888888888877753

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.53  E-value=3.5  Score=44.06  Aligned_cols=49  Identities=24%  Similarity=0.411  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +.|+..++.+-..++.....|..++....+||+.|+.+|..|+.+|+..
T Consensus       279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q  327 (581)
T KOG0995|consen  279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ  327 (581)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566677777777777777777777777777778888888877776653

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=88.42  E-value=1.6  Score=37.02  Aligned_cols=37  Identities=22%  Similarity=0.454  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      ..+..|+.++..+..+++.|+..+..+..+...|+.+
T Consensus        80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E  116 (118)
T PF13815_consen   80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444444444444444444444444443

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=88.38  E-value=8.4  Score=37.74  Aligned_cols=50  Identities=14%  Similarity=0.342  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +.+++.++.++...+.+..+++.++...+.++..|+.+-.+|...+..+.
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~  255 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777777777777777777777777777777766666555543

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=88.37  E-value=3.3  Score=35.84  Aligned_cols=39  Identities=28%  Similarity=0.365  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +..|+.+...|..+...+-+-+-.-..++..|+..|.++
T Consensus        70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl  108 (120)
T PF12325_consen   70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL  108 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            333333333333333333333333334555555555544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=88.31  E-value=4.9  Score=41.99  Aligned_cols=79  Identities=20%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCchhh
Q 019499          251 KRKQSNRESARRSRLRKQA----ECEELQARVETLSNENRNLRDELQRL----SEECEKLTSENNSIKEDLSRLCGPEAV  322 (340)
Q Consensus       251 rRk~~NRESARRSR~RKq~----~leeLE~rv~~Le~EN~~Lr~el~~L----~~e~~~L~~EN~~Lk~eL~~L~g~~~~  322 (340)
                      +-.+.|-+++++.-+||.+    .++.++.++..++.+|..|++....+    ++..+.+..++..+.++|.+|+  +.|
T Consensus       367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq--EQl  444 (493)
T KOG0804|consen  367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ--EQL  444 (493)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence            3345566777777666654    34556666666677776666654433    3344445555666666677776  777


Q ss_pred             hhhhhcCCC
Q 019499          323 ANLEQSNPT  331 (340)
Q Consensus       323 ~~L~~~~~~  331 (340)
                      ++|.--+++
T Consensus       445 rDlmf~le~  453 (493)
T KOG0804|consen  445 RDLMFFLEA  453 (493)
T ss_pred             HhHheehhh
Confidence            777776666

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=88.16  E-value=7.6  Score=34.74  Aligned_cols=59  Identities=25%  Similarity=0.407  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      .++..|..++...+.+...++.++..++.+...++.+|..|+.+...+.-|+.+.+...
T Consensus        91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~  149 (177)
T PF13870_consen   91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK  149 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence            44556667777777788888888888888888888889988888888888887766544

>PRK14127 cell division protein GpsB; Provisional

Probab=88.02  E-value=0.86  Score=38.89  Aligned_cols=41  Identities=20%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  309 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  309 (340)
                      +.|+++...++.|..||..|+.++..|+.++..+..+....
T Consensus        30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~   70 (109)
T PRK14127         30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG   70 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            45566666666777777777777766666666666555443

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=88.01  E-value=6.6  Score=28.75  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          286 RNLRDELQRLSEECEKLTSENNSI  309 (340)
Q Consensus       286 ~~Lr~el~~L~~e~~~L~~EN~~L  309 (340)
                      ..|..++..|..++..|..++..|
T Consensus        28 ~~le~~~~~L~~en~~L~~~i~~L   51 (54)
T PF07716_consen   28 EELEQEVQELEEENEQLRQEIAQL   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444443

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins

Probab=88.01  E-value=2.4  Score=41.47  Aligned_cols=44  Identities=18%  Similarity=0.223  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ||-+++....|+..|+.++..|+.+.+.++++.+..++.|+-|+
T Consensus        69 ~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr  112 (389)
T PF06216_consen   69 KEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR  112 (389)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44444444444444444444444444444444444444444443

The function of this family is unknown.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=88.00  E-value=1.6  Score=42.04  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          262 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       262 RSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      ++-.-=+..|+.|+++|..|+.+++++.-+|+.|+++-..|-.+...+..+++
T Consensus        54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~  106 (263)
T PRK10803         54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA  106 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34456688999999999999999999999999999999999988888766554

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=87.98  E-value=2  Score=45.72  Aligned_cols=60  Identities=23%  Similarity=0.439  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          259 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       259 SARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      .+.+.|..-++.+.++..++..|++|...++.++..|..+...|+.||.+|..+|..++.
T Consensus       131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            333444444455566666777777777777777777777777777777777777777654

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=87.86  E-value=3.9  Score=37.04  Aligned_cols=37  Identities=32%  Similarity=0.496  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ++.++..+..+++.|++++++.+.|...|+.|++.+.
T Consensus       152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~  188 (192)
T PF05529_consen  152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ  188 (192)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667778888888888888888888888887775

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.75  E-value=2.3  Score=41.49  Aligned_cols=53  Identities=25%  Similarity=0.343  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .-=+.+|+.|..+|+.+..+...++.++..++.++..|..+...|++.|....
T Consensus        48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~  100 (265)
T COG3883          48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ  100 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445666666666666666667777777777777777777777776666543

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=87.74  E-value=3  Score=33.21  Aligned_cols=29  Identities=28%  Similarity=0.390  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      .+.+..++.|+.||=.|+-+|-.|.+.+.
T Consensus         3 rEqe~~i~~L~KENF~LKLrI~fLee~l~   31 (75)
T PF07989_consen    3 REQEEQIDKLKKENFNLKLRIYFLEERLQ   31 (75)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34555666666666666655555555443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.71  E-value=7.2  Score=35.60  Aligned_cols=18  Identities=28%  Similarity=0.390  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 019499          297 EECEKLTSENNSIKEDLS  314 (340)
Q Consensus       297 ~e~~~L~~EN~~Lk~eL~  314 (340)
                      .|+..|..++..|.+++.
T Consensus       151 DE~~~L~l~~~~~e~k~~  168 (194)
T PF08614_consen  151 DELQALQLQLNMLEEKLR  168 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=87.64  E-value=4.2  Score=38.60  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      |+++.+.+.++...|+.+++....+++.+..+...|+.+.+.+.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~  192 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ  192 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444444444444444444444444444444444444444443

>PRK00736 hypothetical protein; Provisional

Probab=87.64  E-value=2.9  Score=32.58  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      .++.|+..|+.....+..-|+.|.+.+.....++..|+.+|..|.  +.+..+..
T Consensus         2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~--~rl~~~~~   54 (68)
T PRK00736          2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT--ERFLSLEE   54 (68)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence            367888899999998889999998888888888899999888887  56666553

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.55  E-value=5.8  Score=40.94  Aligned_cols=11  Identities=36%  Similarity=0.733  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q 019499          292 LQRLSEECEKL  302 (340)
Q Consensus       292 l~~L~~e~~~L  302 (340)
                      +..|.+++..+
T Consensus       381 l~~l~~~l~~~  391 (562)
T PHA02562        381 LAKLQDELDKI  391 (562)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=87.32  E-value=9.5  Score=29.41  Aligned_cols=37  Identities=27%  Similarity=0.500  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  304 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~  304 (340)
                      +.-...++.++...+..|..|..+|..|+++++.|+.
T Consensus        24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445567788888888888888888888888877765

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=87.30  E-value=2.4  Score=39.61  Aligned_cols=40  Identities=30%  Similarity=0.428  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .|+.|+.-|..|..+...|+..++.+...|++|.++|..|
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L   48 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDL   48 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=87.29  E-value=2.4  Score=43.21  Aligned_cols=61  Identities=28%  Similarity=0.288  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          258 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       258 ESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +.|..-|+|-.+--.+.|..++.+..|...||.+++++.+....|+.|+..|++-+..|..
T Consensus       227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA  287 (561)
T KOG1103|consen  227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA  287 (561)
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4555666776666677777888888899999999999999999999999999998888864

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=87.27  E-value=5.1  Score=42.76  Aligned_cols=61  Identities=30%  Similarity=0.396  Sum_probs=35.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      +++-|..+|..-.--...+.+|+.++..++..+..|..++..|+.++..|..+...++.+|
T Consensus       132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l  192 (546)
T KOG0977|consen  132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL  192 (546)
T ss_pred             HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3344444444333234556666666666666666666666666666666666666666543

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=87.24  E-value=7.1  Score=35.28  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 019499          281 LSNENRNLRDELQRLSEECEKLT  303 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~  303 (340)
                      ++.++..|..++..|+.++..|.
T Consensus        87 ~~~e~k~L~~~v~~Le~e~r~L~  109 (158)
T PF09744_consen   87 WRQERKDLQSQVEQLEEENRQLE  109 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443333

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=87.13  E-value=4.2  Score=35.54  Aligned_cols=56  Identities=18%  Similarity=0.197  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA  323 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~  323 (340)
                      .-+..||+.+|..|+.|+..+..-...|...+..|+..+...++++..+.....+.
T Consensus        24 eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~   79 (134)
T PF08232_consen   24 EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN   79 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            34456788899999999999999999999999999999999999988876654443

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.09  E-value=2.9  Score=42.23  Aligned_cols=50  Identities=24%  Similarity=0.280  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      |-++++++|.++-+.|..-..+|+.++++|+++...|......|+.+.++
T Consensus       229 ~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  229 RLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33444455555555555555556666666666666666666666665555

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=87.04  E-value=2.7  Score=32.07  Aligned_cols=39  Identities=33%  Similarity=0.602  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhhhh
Q 019499          286 RNLRDELQRLSEECEKLTSENNSIKEDLSRL-CGPEAVAN  324 (340)
Q Consensus       286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L-~g~~~~~~  324 (340)
                      ..++.++..|+.+++.|+.+|..|+.++..| ..++.+..
T Consensus        20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~   59 (80)
T PF04977_consen   20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK   59 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3455555566666666666666666666666 44444433

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>smart00340 HALZ homeobox associated leucin zipper

Probab=86.99  E-value=1.2  Score=32.19  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          292 LQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       292 l~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      .+.|++-|+.|..||++|+.++.+|+.
T Consensus         7 Ce~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        7 CELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455677777777777777777777764

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=86.83  E-value=2.5  Score=31.67  Aligned_cols=48  Identities=23%  Similarity=0.252  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ++..|++|+.++..-. |  .=.-.-...+.++..|+.||..|+++|..++
T Consensus         2 w~~Rl~ELe~klkaer-E--~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r   49 (52)
T PF12808_consen    2 WLLRLEELERKLKAER-E--ARSLDRSAARKRLSKLEGENRLLRAELERLR   49 (52)
T ss_pred             HHHHHHHHHHHHHHhH-H--hccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666554322 1  1111223344555666666666766666553

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=86.70  E-value=3.7  Score=40.57  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      .-+|+.|+.|-+.|+..-.+|..||..|++-+.
T Consensus       254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~  286 (294)
T KOG4571|consen  254 LGELEGLEKRNEELKDQASELEREIRYLKQLIL  286 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555555544443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.60  E-value=13  Score=33.29  Aligned_cols=47  Identities=21%  Similarity=0.432  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ...++.+++.++.....+.+++..|.+++.+++.+-..++.++..+.
T Consensus       125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~  171 (191)
T PF04156_consen  125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQ  171 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777777777777667777777777777777764

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=86.47  E-value=2.7  Score=42.81  Aligned_cols=47  Identities=19%  Similarity=0.193  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCCC
Q 019499          285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT  331 (340)
Q Consensus       285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~~  331 (340)
                      +..|..++..|+.++..++.|...|+++|.+|+. +..+.++...+++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (398)
T PTZ00454         31 LEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDS   78 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcC
Confidence            3333333444444444445555555555666554 3345555544443

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=86.36  E-value=6.4  Score=35.53  Aligned_cols=46  Identities=35%  Similarity=0.599  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .+|..+|+.|+.+|..|..++..+..+...|......|+.++..++
T Consensus        92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~  137 (158)
T PF09744_consen   92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH  137 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence            3455666666677766666666666666666666666666665554

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=86.35  E-value=2.1  Score=43.10  Aligned_cols=60  Identities=32%  Similarity=0.388  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCCC
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT  331 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~~  331 (340)
                      ..|+.++..|+.+++.|+.++..|..++..++.+...|++++..+.. +..+..+...+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   64 (389)
T PRK03992          4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDD   64 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCC
Confidence            44555555566666666666666666666667777777777776664 3445555555444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=86.31  E-value=7.9  Score=43.76  Aligned_cols=31  Identities=19%  Similarity=0.436  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          286 RNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ..|+.++..|++.++.|..+...||++++.-
T Consensus       328 esLQ~eve~lkEr~deletdlEILKaEmeek  358 (1243)
T KOG0971|consen  328 ESLQQEVEALKERVDELETDLEILKAEMEEK  358 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3466666666666666666666666666554

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=86.02  E-value=5.2  Score=42.72  Aligned_cols=69  Identities=20%  Similarity=0.391  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~E-------N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      ++.++.-...+++-.+|...+-+++.+++++++|+.|+..       ..+..++++.|+.+++..+...+.|+.+|
T Consensus       167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l  242 (555)
T TIGR03545       167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL  242 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444566778888888888889999999999998874       23455566666555555444444444443

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=86.01  E-value=3.2  Score=38.18  Aligned_cols=42  Identities=31%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +.+++.|..-|.-|+.+++.....++.|..++..|...+..+
T Consensus        73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l  114 (182)
T PF15035_consen   73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL  114 (182)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555554444443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.96  E-value=7.2  Score=43.48  Aligned_cols=65  Identities=18%  Similarity=0.225  Sum_probs=53.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..++-..=+--+.+-.-.++.|++....|+.||++|..++..+..+..+|+.++.-|+.+|....
T Consensus       655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~  719 (970)
T KOG0946|consen  655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS  719 (970)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            33444445556777778889999999999999999999999999999999999999999998554

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.94  E-value=2.5  Score=42.08  Aligned_cols=21  Identities=48%  Similarity=0.645  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRD  290 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~  290 (340)
                      +++-+..++..|..+|..|+.
T Consensus        42 El~~ek~~~~~L~~e~~~lr~   62 (310)
T PF09755_consen   42 ELETEKARCKHLQEENRALRE   62 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444443

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=85.93  E-value=9.7  Score=39.37  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019499          245 RELKRQKRKQSNRESARRSRLRKQAECEELQA  276 (340)
Q Consensus       245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~  276 (340)
                      .+.|.+|||....+-=||.|..=..+|.+|-.
T Consensus       226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~  257 (411)
T KOG1318|consen  226 ALERDRRKRDNHNEVERRRRENINDRIKELGQ  257 (411)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33344555666677888888877777777754

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=85.83  E-value=7.3  Score=36.46  Aligned_cols=18  Identities=22%  Similarity=0.363  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHhHHHHH
Q 019499          244 ERELKRQKRKQSNRESAR  261 (340)
Q Consensus       244 E~e~KR~rRk~~NRESAR  261 (340)
                      |.-++|.||-...+.++=
T Consensus        19 eel~~rLR~~E~ek~~~m   36 (195)
T PF10226_consen   19 EELVRRLRRAEAEKMSLM   36 (195)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455667777666666554

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=85.74  E-value=13  Score=34.76  Aligned_cols=85  Identities=18%  Similarity=0.311  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 019499          244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA  323 (340)
Q Consensus       244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~  323 (340)
                      +-|+||.+ ++.-.+-..|.-..-+++...|+..+..-+..-...-.+-..++.+...|..|...++.+|.+|+  ..|.
T Consensus       102 ~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ--~qv~  178 (192)
T PF11180_consen  102 DVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ--RQVR  178 (192)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            34444443 44555555566666677777788777777776666666667777777788888888888888877  6667


Q ss_pred             hhhhcCCC
Q 019499          324 NLEQSNPT  331 (340)
Q Consensus       324 ~L~~~~~~  331 (340)
                      .|+...+.
T Consensus       179 ~Lq~q~~~  186 (192)
T PF11180_consen  179 QLQRQANE  186 (192)
T ss_pred             HHHHHhcC
Confidence            66665443

>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]

Probab=85.70  E-value=9.4  Score=36.40  Aligned_cols=28  Identities=29%  Similarity=0.462  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          292 LQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       292 l~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      -+..+++++-|+.-|+.|+++|+.+..+
T Consensus       230 Ekk~~eei~fLk~tN~qLKaQLegI~ap  257 (259)
T KOG4001|consen  230 EKKMKEEIEFLKETNRQLKAQLEGILAP  257 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            3445566777778888888888776544

>PF13118 DUF3972: Protein of unknown function (DUF3972)

Probab=85.56  E-value=4.1  Score=35.75  Aligned_cols=46  Identities=26%  Similarity=0.363  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +....+-+..|+.||.-|+..+-.+++.++.=+.....|+++|...
T Consensus        80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~  125 (126)
T PF13118_consen   80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM  125 (126)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4555677888999999999999999999999999999999999865

>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]

Probab=85.47  E-value=3.4  Score=41.61  Aligned_cols=49  Identities=24%  Similarity=0.336  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      |..|++++.++..-..||.++.+++++++.-|..|.....+||+.|.+-
T Consensus       153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR  201 (405)
T KOG2010|consen  153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR  201 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999999999999999999988763

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=85.39  E-value=2.7  Score=31.51  Aligned_cols=32  Identities=34%  Similarity=0.507  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      ++...-.....++..|+.||..|+.+|..++.
T Consensus        19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen   19 ARSLDRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             hccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444466688888999999999999987754

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=85.19  E-value=1.6  Score=44.04  Aligned_cols=19  Identities=42%  Similarity=0.569  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 019499          284 ENRNLRDELQRLSEECEKL  302 (340)
Q Consensus       284 EN~~Lr~el~~L~~e~~~L  302 (340)
                      ||..|++|++.|+.+.++|
T Consensus        40 EN~~LKkEN~~Lk~eVerL   58 (420)
T PF07407_consen   40 ENHSLKKENNDLKIEVERL   58 (420)
T ss_pred             HhHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.09  E-value=6.9  Score=39.61  Aligned_cols=64  Identities=23%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS  308 (340)
Q Consensus       243 DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~  308 (340)
                      +++.+|+.++.+-+|..|-.+-+|+..  |+|..-...|+.+.+.|.+++..|+..|+-|....++
T Consensus       215 ~~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  215 VREKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            344444444455555555444444433  3444444445555555555555555555555444443

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=85.05  E-value=5.2  Score=30.50  Aligned_cols=41  Identities=24%  Similarity=0.485  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .+++.|..+...|..++..|..++..|+.+....+++...-
T Consensus         3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA   43 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA   43 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777777777777777777777777777666665543

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PRK14143 heat shock protein GrpE; Provisional

Probab=84.89  E-value=3.1  Score=39.88  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 019499          272 EELQARVETLSNENRNLRDEL  292 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el  292 (340)
                      ++|..++..|.++...+|++.
T Consensus        84 ~elkd~~lR~~AdfeN~RKR~  104 (238)
T PRK14143         84 EELNSQYMRIAADFDNFRKRT  104 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444333333

>PF15556 Zwint: ZW10 interactor

Probab=84.72  E-value=15  Score=34.94  Aligned_cols=59  Identities=17%  Similarity=0.293  Sum_probs=28.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          255 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       255 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      ++|.+...-.+....++..|.+....++.....-+.+|+.|..++..|+.+-..-+++|
T Consensus       120 K~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKL  178 (252)
T PF15556_consen  120 KLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKL  178 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444555555554444444444444555555555555544443333333

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=84.70  E-value=3.2  Score=43.51  Aligned_cols=51  Identities=14%  Similarity=0.335  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +++|+.|+.+++.|...+..|.++|+.|+.++..|+.+...++.++....+
T Consensus        82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~~~  132 (475)
T PRK13729         82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATG  132 (475)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Confidence            455677777788788888888888888888888888888777777665443

>TIGR02231 conserved hypothetical protein

Probab=84.67  E-value=11  Score=39.19  Aligned_cols=47  Identities=15%  Similarity=0.159  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      ++|.+-+..+..+..+|+.++..|..++..|+.+...|+.+|..+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~  173 (525)
T TIGR02231       127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT  173 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34555555666677777788888888888888888888888887765

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein

Probab=84.47  E-value=19  Score=31.57  Aligned_cols=50  Identities=32%  Similarity=0.466  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHhc
Q 019499          268 QAECEELQARVETLSNENRNLRDEL-QRLSEECE-------KLTSENNSIKEDLSRLC  317 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el-~~L~~e~~-------~L~~EN~~Lk~eL~~L~  317 (340)
                      .+.+..+..++..|+..+..|+.+. ..++.+..       .|...+..+|.+|..|-
T Consensus        54 ~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG  111 (136)
T PF04871_consen   54 EAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG  111 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence            3335555555555655555555443 44444444       45566666666666663

This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=84.43  E-value=9.4  Score=38.24  Aligned_cols=47  Identities=17%  Similarity=0.337  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      ..|..-+...+.+|..|..++..|++++..+.-++..||+++..++.
T Consensus        68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~  114 (319)
T PF09789_consen   68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV  114 (319)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence            45556666777777777777777777777777777777777777653

>PRK14158 heat shock protein GrpE; Provisional

Probab=84.40  E-value=3.4  Score=38.53  Aligned_cols=26  Identities=19%  Similarity=0.162  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQR  294 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~  294 (340)
                      +++++|+.++..+.++...++.+..+
T Consensus        54 ~e~~el~d~~lR~~AefeN~RkR~~k   79 (194)
T PRK14158         54 AEAAANWDKYLRERADLENYRKRVQK   79 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444433

>PF14282 FlxA: FlxA-like protein

Probab=84.37  E-value=4.3  Score=34.02  Aligned_cols=48  Identities=15%  Similarity=0.288  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          271 CEELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       271 leeLE~rv~~Le~----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +..|+.++..|..    .......++..|+.++..|..+...|..+......
T Consensus        28 i~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~   79 (106)
T PF14282_consen   28 IKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ   79 (106)
T ss_pred             HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555    22455666777777777777777777776666543

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=84.21  E-value=3.5  Score=34.02  Aligned_cols=27  Identities=26%  Similarity=0.462  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          289 RDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       289 r~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      ..+|..|+.++..|..||..|+.+|..
T Consensus        48 ek~v~~L~~e~~~l~~E~e~L~~~l~~   74 (87)
T PF12709_consen   48 EKKVDELENENKALKRENEQLKKKLDT   74 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555555444443

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]

Probab=84.14  E-value=3  Score=40.67  Aligned_cols=48  Identities=31%  Similarity=0.282  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +-.+..+|+.+.+.|+.++.+|.    .+..+.+.|+.||.+|++.|..-..
T Consensus        64 ~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~~  111 (284)
T COG1792          64 FLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKES  111 (284)
T ss_pred             HHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCccc
Confidence            34444555555555555554433    3445568899999999988876543

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=84.01  E-value=2.4  Score=36.44  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          285 NRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       285 N~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      .+.|+.+|..|.+.+..|+.||.-||
T Consensus        69 Ve~Lk~qI~eL~er~~~Le~EN~lLk   94 (123)
T KOG4797|consen   69 VEVLKEQIRELEERNSALERENSLLK   94 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555556666666655

>PRK14139 heat shock protein GrpE; Provisional

Probab=84.00  E-value=3.5  Score=38.14  Aligned_cols=9  Identities=11%  Similarity=-0.042  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 019499          276 ARVETLSNE  284 (340)
Q Consensus       276 ~rv~~Le~E  284 (340)
                      .++..+.++
T Consensus        53 d~~lR~~Ae   61 (185)
T PRK14139         53 DSFLRAKAE   61 (185)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.97  E-value=15  Score=35.00  Aligned_cols=43  Identities=21%  Similarity=0.360  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .+.+..|+....+++.+....++.+..|..|-..|+.++..++
T Consensus        59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R  101 (230)
T PF10146_consen   59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR  101 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S

Probab=83.88  E-value=10  Score=34.24  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      +-.+..+++++.|..|+-+-+.|-.++.+|..++...+....+|..+|..|...+.
T Consensus        81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~  136 (152)
T PF11500_consen   81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMA  136 (152)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677888999999999999999999999888777776666666666554444

cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=83.85  E-value=13  Score=31.15  Aligned_cols=50  Identities=22%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          267 KQAECEELQARVETL--SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       267 Kq~~leeLE~rv~~L--e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ...++..||.+++.|  ..+...|+-++..++-++..|..+.+.+..++.-|
T Consensus        47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666  55666666666666666666666666555554443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK03918 chromosome segregation protein; Provisional

Probab=83.81  E-value=12  Score=40.96  Aligned_cols=10  Identities=20%  Similarity=0.418  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 019499          273 ELQARVETLS  282 (340)
Q Consensus       273 eLE~rv~~Le  282 (340)
                      +|+.++..|+
T Consensus       204 ~l~~ei~~l~  213 (880)
T PRK03918        204 EVLREINEIS  213 (880)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=83.80  E-value=4  Score=34.57  Aligned_cols=39  Identities=36%  Similarity=0.481  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +.|...+..|..++..+.+++++|+.++..+.+++..|.
T Consensus        76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk  114 (118)
T PF13815_consen   76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK  114 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666666666666666666654

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=83.77  E-value=18  Score=29.46  Aligned_cols=46  Identities=20%  Similarity=0.442  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLS-----NENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       269 ~~leeLE~rv~~Le-----~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      .++..||.+++.--     .....|..++..|+++...|..+|..|+.+|.
T Consensus        49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45666666555322     24556888899999999999999999998875

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli

Probab=83.71  E-value=12  Score=31.88  Aligned_cols=23  Identities=43%  Similarity=0.674  Sum_probs=18.9

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHH
Q 019499          240 WIQDERELKRQKRKQSNRESARR  262 (340)
Q Consensus       240 ~~~DE~e~KR~rRk~~NRESARR  262 (340)
                      .+.+||+.+.++|..+||||-+.
T Consensus        47 ~MKEER~K~E~~~q~r~rES~~E   69 (121)
T PF10669_consen   47 RMKEERSKKEEKRQKRNRESKRE   69 (121)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH
Confidence            36678999999999999998654

The function is currently unknown.

>PRK14155 heat shock protein GrpE; Provisional

Probab=83.66  E-value=2.5  Score=39.71  Aligned_cols=21  Identities=14%  Similarity=0.199  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 019499          272 EELQARVETLSNENRNLRDEL  292 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el  292 (340)
                      ++|+.++..+.++.+.+|++.
T Consensus        30 ~elkd~~lR~~AefeN~RKR~   50 (208)
T PRK14155         30 AALKDQALRYAAEAENTKRRA   50 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444333333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=83.57  E-value=12  Score=42.02  Aligned_cols=80  Identities=24%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499          247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  326 (340)
Q Consensus       247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~  326 (340)
                      +++-.-.++.-++++.+-....++..+|..+++.|..+-..+..+.+.+.+.++.|+.|...|..+++.|+..  +.++.
T Consensus       444 L~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~--~~~~~  521 (980)
T KOG0980|consen  444 LRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT--LSNLA  521 (980)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence            3344456677788888888888888888888888888888877788888888888888888888888888743  45544


Q ss_pred             hc
Q 019499          327 QS  328 (340)
Q Consensus       327 ~~  328 (340)
                      +.
T Consensus       522 qs  523 (980)
T KOG0980|consen  522 QS  523 (980)
T ss_pred             HH
Confidence            43

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=83.44  E-value=21  Score=33.10  Aligned_cols=29  Identities=21%  Similarity=0.400  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          289 RDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       289 r~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +.++..+.+++..|+-|+..|..++.++.
T Consensus        92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle  120 (201)
T PF13851_consen   92 KARLKELEKELKDLKWEHEVLEQRFEKLE  120 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555554443

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=83.36  E-value=5.4  Score=34.64  Aligned_cols=36  Identities=33%  Similarity=0.480  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKL  302 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L  302 (340)
                      |..-+++|+.+++.|+-+...|..+-+.|+++++.|
T Consensus        68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eL  103 (119)
T COG1382          68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEEL  103 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555444444444444444333333333

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=83.16  E-value=6.9  Score=31.72  Aligned_cols=34  Identities=35%  Similarity=0.414  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTS  304 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~  304 (340)
                      |+.|-.||+..+.||..|..+.+.|+.=+..|..
T Consensus        32 L~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen   32 LEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555555554444443

The exact function is unknown.

>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins

Probab=83.12  E-value=1.2  Score=32.36  Aligned_cols=33  Identities=33%  Similarity=0.460  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      |-..|..|..++..|..++..|..||..||+++
T Consensus        12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~   44 (46)
T PF07558_consen   12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV   44 (46)
T ss_dssp             ------------------HHHHHHHHHHHHHHH
T ss_pred             HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence            444555666666666666666666666666654

Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=83.12  E-value=7  Score=34.49  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC  299 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~  299 (340)
                      .++-.+|..|..++..|+.+...|..+|..++...
T Consensus        31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l   65 (143)
T PF12718_consen   31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL   65 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK14140 heat shock protein GrpE; Provisional

Probab=82.97  E-value=3.2  Score=38.54  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKL  302 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L  302 (340)
                      |++|+.+++.|+.++.+|+.++.++..+++-+
T Consensus        39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~   70 (191)
T PRK14140         39 LDEEQAKIAELEAKLDELEERYLRLQADFENY   70 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444443333333

>PF15058 Speriolin_N: Speriolin N terminus

Probab=82.95  E-value=2.9  Score=39.17  Aligned_cols=38  Identities=29%  Similarity=0.469  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .|.|.++++.|-.||++|++++..+        .||.+||.-|.+-
T Consensus         7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea   44 (200)
T PF15058_consen    7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA   44 (200)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence            4678889999999999999988554        4555555544443

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=82.90  E-value=17  Score=32.22  Aligned_cols=49  Identities=24%  Similarity=0.305  Sum_probs=25.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          252 RKQSNRESARRSRLRKQAECEELQ-------ARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       252 Rk~~NRESARRSR~RKq~~leeLE-------~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      +++..-+.+.+.-.+|++.++.|+       .+|..|+.+...+..++..++..++
T Consensus       114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~  169 (218)
T cd07596         114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYE  169 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555555555553       2455555555555555555544433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=82.66  E-value=16  Score=39.65  Aligned_cols=28  Identities=36%  Similarity=0.521  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      +..+|+.+++.|+.++..|+.++..++.
T Consensus       437 e~~~L~~~~ee~k~eie~L~~~l~~~~r  464 (652)
T COG2433         437 ENSELKRELEELKREIEKLESELERFRR  464 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555554444443

>TIGR02977 phageshock_pspA phage shock protein A

Probab=82.64  E-value=11  Score=35.02  Aligned_cols=51  Identities=10%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      ++.+..|+.++..++.....|+.+|..|+.++..++..-..|..+......
T Consensus        98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a  148 (219)
T TIGR02977        98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS  148 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666777777777777777777777777777777766666655443

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=82.60  E-value=4.8  Score=43.30  Aligned_cols=44  Identities=34%  Similarity=0.575  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      |++|+.+++.++.+...|..++..+.++++.++.++.+|..++.
T Consensus       337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~  380 (594)
T PF05667_consen  337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK  380 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444544455555555544444444444433

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=82.56  E-value=28  Score=29.83  Aligned_cols=43  Identities=14%  Similarity=0.209  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  311 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  311 (340)
                      .-.++|..+.+.|+.-+..|+.+...+.+.+..|..+...++.
T Consensus        30 ~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~   72 (107)
T PF09304_consen   30 TSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR   72 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333344333333333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=82.44  E-value=1.6  Score=33.49  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLS  296 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~  296 (340)
                      ++.|..++..|+.+|..|..|...|+
T Consensus        16 VevLK~~I~eL~~~n~~Le~EN~~Lk   41 (59)
T PF01166_consen   16 VEVLKEQIAELEERNSQLEEENNLLK   41 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=82.41  E-value=7.7  Score=31.80  Aligned_cols=28  Identities=29%  Similarity=0.545  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          288 LRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      |..++..|++++..|+.+...+.++|..
T Consensus        72 l~~e~~~lk~~i~~le~~~~~~e~~l~~   99 (108)
T PF02403_consen   72 LKAEVKELKEEIKELEEQLKELEEELNE   99 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins

Probab=82.39  E-value=1.3  Score=32.13  Aligned_cols=43  Identities=37%  Similarity=0.499  Sum_probs=11.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL  292 (340)
Q Consensus       249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el  292 (340)
                      ++++..+||+=|+.--... ..|.+|+.++..|..||..||.++
T Consensus         2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~   44 (46)
T PF07558_consen    2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV   44 (46)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence            3566777877776655443 357778888888888888877765

Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=82.35  E-value=15  Score=30.03  Aligned_cols=10  Identities=30%  Similarity=0.587  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 019499          305 ENNSIKEDLS  314 (340)
Q Consensus       305 EN~~Lk~eL~  314 (340)
                      +-..|+.+|.
T Consensus        75 e~~~lk~~i~   84 (108)
T PF02403_consen   75 EVKELKEEIK   84 (108)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF15030 DUF4527: Protein of unknown function (DUF4527)

Probab=82.18  E-value=14  Score=35.94  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          244 ERELKRQKRKQSNRESARRSRLRKQAECE-ELQARVETLSNENRNLRDELQRLSEECEK  301 (340)
Q Consensus       244 E~e~KR~rRk~~NRESARRSR~RKq~~le-eLE~rv~~Le~EN~~Lr~el~~L~~e~~~  301 (340)
                      |++.|-.-|++..+.=--+|.+|-|...- +|+...+.-..--.+|+.+++.|+++..+
T Consensus        11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~E   69 (277)
T PF15030_consen   11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHE   69 (277)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44455555555555555555555554443 44444333333334444444444444333

>PRK14160 heat shock protein GrpE; Provisional

Probab=82.04  E-value=5.4  Score=37.69  Aligned_cols=60  Identities=20%  Similarity=0.226  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT  331 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~  331 (340)
                      +.|+.+++.|+.+...|+.++.+++.+++-++....+=+.++........+.+|...+|+
T Consensus        64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn  123 (211)
T PRK14160         64 NKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN  123 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence            334444444444444444444444444444443333334444444455556666555554

>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export []

Probab=81.99  E-value=2.2  Score=35.34  Aligned_cols=30  Identities=40%  Similarity=0.585  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLS  296 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~  296 (340)
                      |+.+++.|..+++.|+.+|..|..+|..++
T Consensus        78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r  107 (109)
T PF03980_consen   78 KKKEREQLNARLQELEEENEALAEEIQEQR  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345556666666666666666666665544

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.98  E-value=9.8  Score=30.42  Aligned_cols=58  Identities=19%  Similarity=0.198  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCC
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP  330 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~  330 (340)
                      ..+||+|+..|+.....-.+-|+.|...+........+++.+|..|.  +.+.++..++-
T Consensus         3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~--~kl~~~~~~~~   60 (72)
T COG2900           3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT--EKLKDLQPSAI   60 (72)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccccc
Confidence            35788899999988888888888888888888888888888888887  66666665543

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=81.93  E-value=29  Score=34.12  Aligned_cols=47  Identities=17%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ++..+.+++.++.+..+..+++..+++.+...+....+|..+-..|.
T Consensus       202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~  248 (269)
T PF05278_consen  202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLS  248 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445555555555555555555555555555555544444

>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein

Probab=81.91  E-value=31  Score=30.25  Aligned_cols=10  Identities=20%  Similarity=0.275  Sum_probs=4.2

Q ss_pred             hhhhhhhhcC
Q 019499          320 EAVANLEQSN  329 (340)
Q Consensus       320 ~~~~~L~~~~  329 (340)
                      ..|+.|.+..
T Consensus       105 ~rLk~LG~eV  114 (136)
T PF04871_consen  105 ERLKELGEEV  114 (136)
T ss_pred             HHHHHcCCCc
Confidence            3444444433

This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=81.89  E-value=21  Score=34.85  Aligned_cols=72  Identities=19%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          245 RELKRQKRKQSNRESARRSRLRKQAECE---------ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       245 ~e~KR~rRk~~NRESARRSR~RKq~~le---------eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      .++.+.++.....-+.+.  ..|++.+.         .++..+..+..+|..+..++..-+++++.|+.++..|+++++.
T Consensus       141 del~e~~~~el~~l~~~~--q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~  218 (258)
T PF15397_consen  141 DELNEMRQMELASLSRKI--QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ  218 (258)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555444332  22332222         2444566677899999999999999999999999999999999


Q ss_pred             hcC
Q 019499          316 LCG  318 (340)
Q Consensus       316 L~g  318 (340)
                      |+.
T Consensus       219 L~~  221 (258)
T PF15397_consen  219 LQA  221 (258)
T ss_pred             HHH
Confidence            873

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=81.84  E-value=1.1  Score=40.74  Aligned_cols=30  Identities=43%  Similarity=0.647  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          284 ENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      |-+.|+.++++|+.|+..|+.|+ .+++++.
T Consensus        25 EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~   54 (166)
T PF04880_consen   25 EKENLREEVQRLKDELRDLKQEL-IVQEKLR   54 (166)
T ss_dssp             HHHHHHHCH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence            34446666666666666666666 5555554

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=81.54  E-value=20  Score=34.44  Aligned_cols=39  Identities=33%  Similarity=0.527  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +..++.|+..++.++..|+.++..|+..|..|..+|..+
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l  249 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL  249 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence            344444555555555555555555555555555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function

Probab=81.49  E-value=4.7  Score=35.51  Aligned_cols=43  Identities=26%  Similarity=0.364  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      .+...|.-++.|+.+...=..+|..|+++++.+...|..|..+
T Consensus        88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr  130 (131)
T PF04859_consen   88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR  130 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3444444455555555555555666666666666666655543

>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=81.35  E-value=7  Score=33.18  Aligned_cols=51  Identities=22%  Similarity=0.229  Sum_probs=25.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS  308 (340)
Q Consensus       253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~  308 (340)
                      .-+||.++|..++-+..+-..|.     -+.|+..|..+++.+.++...+..+..+
T Consensus        55 msQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~~~  105 (108)
T PF06210_consen   55 MSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERDQE  105 (108)
T ss_pred             HHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            44677776643333333222222     2445566666666666555555555443

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=81.06  E-value=6.3  Score=40.13  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  311 (340)
Q Consensus       274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  311 (340)
                      |+.+++.|+.++..|..++..+++++..|+.|+..|+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (398)
T PTZ00454         27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS   64 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44555556666666666666666666666777666653

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=81.02  E-value=12  Score=42.37  Aligned_cols=47  Identities=34%  Similarity=0.492  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhcC
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEE---------------CEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e---------------~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +.|+.+|+.|+..+.+|.-.|+.|+.|               +.+|+.+|.+||+-|.+|+.
T Consensus       328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD  389 (1243)
T KOG0971|consen  328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD  389 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555556666666666666666664               34677888888888777763

>smart00340 HALZ homeobox associated leucin zipper

Probab=81.01  E-value=3.5  Score=29.85  Aligned_cols=27  Identities=44%  Similarity=0.740  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLS  296 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~  296 (340)
                      .|+-|.+-.+.|..||..|+.++..|+
T Consensus         6 dCe~LKrcce~LteeNrRL~ke~~eLr   32 (44)
T smart00340        6 DCELLKRCCESLTEENRRLQKEVQELR   32 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666667777777777777665554

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=80.86  E-value=9.6  Score=34.50  Aligned_cols=9  Identities=33%  Similarity=0.339  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 019499          295 LSEECEKLT  303 (340)
Q Consensus       295 L~~e~~~L~  303 (340)
                      .+.+.+.|+
T Consensus       173 ~~~~~~~Lk  181 (192)
T PF05529_consen  173 KEKEIEALK  181 (192)
T ss_pred             HHHHHHHHH
Confidence            333333333

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S

Probab=80.83  E-value=13  Score=30.06  Aligned_cols=44  Identities=23%  Similarity=0.260  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +|..++...+.|+..|..-+..|+.++.+...-|..|..++..+
T Consensus         9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~   52 (76)
T PF11544_consen    9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNL   52 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444443

cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=80.40  E-value=20  Score=35.54  Aligned_cols=47  Identities=23%  Similarity=0.295  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ++..|..++..+..++...+.++..++.+...|......+.+++.++
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~  251 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL  251 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444443333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=80.36  E-value=19  Score=31.52  Aligned_cols=50  Identities=10%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .++|+.|..+++...+-....++++..++..+..+..+...+..-+..|.
T Consensus        67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le  116 (126)
T PF07889_consen   67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE  116 (126)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            35555666666665555555666666665555555555555555555544

The region featured in this family is approximately 100 amino acids long.

>TIGR00606 rad50 rad50

Probab=80.22  E-value=14  Score=42.94  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 019499          259 SARRSRLRKQAECEELQARVE  279 (340)
Q Consensus       259 SARRSR~RKq~~leeLE~rv~  279 (340)
                      ..+..+.+++..+.+|+.++.
T Consensus       847 ~l~~e~e~~~~eI~~Lq~ki~  867 (1311)
T TIGR00606       847 LNRKLIQDQQEQIQHLKSKTN  867 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=80.19  E-value=6.5  Score=30.72  Aligned_cols=31  Identities=32%  Similarity=0.451  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLS  296 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~  296 (340)
                      ....++..++.+++.|+.||.+|+.|+..|.
T Consensus        28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~   58 (85)
T TIGR02209        28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS   58 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4455566777777777777777777776654

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.13  E-value=16  Score=41.73  Aligned_cols=52  Identities=25%  Similarity=0.431  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ++..+.+.|+-+++.|+.+...+..++..+..+|..|..|+..|...+....
T Consensus       812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~  863 (1174)
T KOG0933|consen  812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE  863 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3344556666666667777777777777777777777777777776666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	1e-20
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	1e-19
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	6e-18
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	2e-17
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-16
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	6e-16
2wt7_B	90	Transcription factor MAFB; transcription, transcri	3e-14
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	4e-14
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	2e-13
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	2e-13
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	4e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	4e-04
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	6e-04

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 83.6 bits (207), Expect = 1e-20
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 304
           +K+ K+ + N+ +A R R +K+AE E L    + L  +N  L++    L++E + L  
Sbjct: 1   MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300
           KR+ R   NRE+AR SR +K+   + L+ RV  L N+N+ L +EL+ L +   
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 75.8 bits (187), Expect = 6e-18
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305
           KR+K  + NR +A RSR +++   + L+ + E LS+ N  L+ E+  L  E  +L   
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302
           KR+ R++ N+ +A + R R++   + LQA  + L +E   L+ E+  L +E EKL
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302
           K ++++  NR +A +SR RK      L+ +V+TL  +N  L      L E+  +L
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 71.6 bits (175), Expect = 6e-16
 Identities = 17/76 (22%), Positives = 36/76 (47%)

Query: 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 301
           ++  +LK+++R   NR  A   R+++  + EEL+ +   L  E   L  E   +  E + 
Sbjct: 31  EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDA 90

Query: 302 LTSENNSIKEDLSRLC 317
           L S+  +++     + 
Sbjct: 91  LRSKYEALQNFARTVA 106

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 66.5 bits (162), Expect = 3e-14
 Identities = 14/69 (20%), Positives = 31/69 (44%)

Query: 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 301
            +   LK+++R   NR  A+  R ++  +   L+     L  +   L+ E+ RL+ E + 
Sbjct: 21  DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80

Query: 302 LTSENNSIK 310
              ++  + 
Sbjct: 81  YKVKSEKLA 89

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 65.4 bits (159), Expect = 4e-14
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302
           +  +    KRK  NR + R  R RK+   + L+ +V TL   + +   E  +L ++  +L
Sbjct: 3   NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62

Query: 303 TSENNSIK 310
             E   +K
Sbjct: 63  EEELRILK 70

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302
           D+   + + R++ N  + R+SR + +    E Q +V  L+ EN  L+ ++++LS E   L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

Query: 303 TSENNSIKEDLSRLCG 318
            +    + E L    G
Sbjct: 70  RNLFKQLPEPLLASSG 85

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 235 IMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 294
           I+P+    D   LKR +    N E+ARRSR RK    ++L+ +VE L ++N +L +E+ R
Sbjct: 2   IVPES--SDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVAR 55

Query: 295 LSE 297
           L +
Sbjct: 56  LKK 58

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 57.6 bits (139), Expect = 4e-11
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302
           D+   + + R++ N  + R+SR + +    E Q +V  L+ EN  L+ ++++LS E   L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 15/76 (19%), Positives = 36/76 (47%)

Query: 241 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300
           +  +RELK+ K +  + E  ++  +  + +  +LQ +++  + E ++L +++  L     
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959

Query: 301 KLTSENNSIKEDLSRL 316
             T +  S  E L   
Sbjct: 960 TETEKLRSDVERLRMS 975

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 241 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300
           +Q E EL  +  +   R +A++  L +     E++AR+E     ++ L+ E +++ ++  
Sbjct: 901 LQAETELYAEAEEMRVRLAAKKQELEEILH--EMEARIEEEEERSQQLQAEKKKMQQQML 958

Query: 301 KLTSENNSIKEDLSRL 316
            L  +    +    +L
Sbjct: 959 DLEEQLEEEEAARQKL 974

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 15/87 (17%), Positives = 39/87 (44%), Gaps = 15/87 (17%)

Query: 245  RELKRQKRKQSNRESARRSRLRK-QAECEELQARVE--------------TLSNENRNLR 289
             E++ +  ++  R    ++  +K Q +  +L+ ++E              T   + + + 
Sbjct: 930  HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989

Query: 290  DELQRLSEECEKLTSENNSIKEDLSRL 316
            D++  + ++  KLT E   ++E +S L
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDL 1016

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 237 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 296
            D+ +  E E  R+ R++      +R RL++           E      ++L +  QR S
Sbjct: 77  ADR-LTQEPESIRKWREE------QRKRLQELDA-ASKVMEQEWREKAKKDLEEWNQRQS 128

Query: 297 EECEKLTSENNSIKE 311
           E+ EK    NN I +
Sbjct: 129 EQVEK-NKINNRIAD 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 59/174 (33%)

Query: 162 DENGNQQEF--ARANTENNTAEAVPGSVP-GKPVVSM--------PATNLNI-GMDLWNT 209
             +   + +   R    N+       +V   +P + +        PA N+ I G+     
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----- 158

Query: 210 SPAAAGAAK--MRTNPSGASPAVAPAGI---MPDQ--WIQDERELKRQKRKQSNRESARR 262
                G+ K  +      A        +   M  +  W+                     
Sbjct: 159 ----LGSGKTWV------ALDVCLSYKVQCKMDFKIFWL--------------------- 187

Query: 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316
                   C   +  +E L      +       S+    +    +SI+ +L RL
Sbjct: 188 ----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A Length = 251

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 220 RTNPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVE 279
           R+   G       +     +  Q  RE    + +  N   +     R   +  +L+AR++
Sbjct: 6   RSEAFGIPRDSPLSSGDAAELEQLRREAAVLREQLENAVGSHAPT-RSARDIHQLEARID 64

Query: 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 321
           +L+  N  L + L+   ++   L       +E++ RL  P +
Sbjct: 65  SLAARNSKLMETLKEARQQLLAL-------REEVDRLGQPPS 99

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Length = 104

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 238 DQWIQDERELKRQKRKQSNRES-ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 296
            + I++  EL++   +  +  +  R    R  A   EL+  ++ L  EN  L  E +   
Sbjct: 33  QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92

Query: 297 EECEKLTSE 305
           ++     S+
Sbjct: 93  QQERAPLSK 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.49
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.45
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.43
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.38
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.33
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.26
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.22
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	99.01
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.95
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.85
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.61
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.4
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	97.05
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	96.72
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.48
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	96.32
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	96.1
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	95.99
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	95.92
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.88
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	95.68
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	95.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.26
3m48_A	33	General control protein GCN4; leucine zipper, synt	95.25
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	95.25
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	95.22
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	95.02
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	94.95
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	94.95
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	94.94
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.8
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	94.77
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	94.75
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	94.72
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	94.65
2wt7_B	90	Transcription factor MAFB; transcription, transcri	94.53
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	94.52
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	94.29
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	94.13
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	94.1
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	94.06
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	94.02
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	93.96
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	93.95
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	93.91
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	93.83
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	93.8
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	93.8
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	93.76
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	93.75
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	93.71
2bni_A	34	General control protein GCN4; four helix bundle, a	93.7
1uo4_A	34	General control protein GCN4; four helix bundle, c	93.67
2wvr_A	209	Geminin; DNA replication license, DNA replication	93.66
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	93.43
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	93.34
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	93.33
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	93.3
2hy6_A	34	General control protein GCN4; protein design, para	93.28
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	93.17
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	93.15
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	93.08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	92.82
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	92.64
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.48
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	91.61
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	91.61
1fmh_A	33	General control protein GCN4; coiled coil, leucine	91.6
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	91.5
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	91.22
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	91.2
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	91.18
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	91.16
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	91.09
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	91.08
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	90.83
3u06_A	412	Protein claret segregational; motor domain, stalk	90.82
3htk_A	60	Structural maintenance of chromosomes protein 5; S	90.65
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	90.57
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.32
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	90.23
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	90.13
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	90.06
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	89.99
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	89.63
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	89.46
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	89.37
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	89.35
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.01
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	88.84
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.71
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	88.64
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	88.36
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.35
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	88.18
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	88.07
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	87.98
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.97
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	87.8
2j5u_A	255	MREC protein; bacterial cell shape determining pro	87.78
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	87.71
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	87.49
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	87.33
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.32
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	87.27
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.16
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	87.05
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	86.88
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	86.88
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	86.81
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	86.78
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	86.69
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	86.68
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	86.55
3htk_A	60	Structural maintenance of chromosomes protein 5; S	86.54
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	86.53
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	86.46
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	86.32
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	86.04
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	85.6
2xv5_A	74	Lamin-A/C; structural protein, intermediate filame	85.47
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	85.42
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	85.36
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	85.28
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	85.17
4ani_A	213	Protein GRPE; chaperone cycle, complementary assay	85.16
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	85.05
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	84.98
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	84.94
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	84.7
2wuj_A	57	Septum site-determining protein diviva; bacterial	84.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.46
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	84.46
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	84.4
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	84.28
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	84.24
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.16
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	84.01
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	83.79
1lwu_C	323	Fibrinogen gamma chain; heterotrimer, protein-pept	83.51
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	83.49
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	83.49
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	83.43
1gk6_A	59	Vimentin; intermediate filament, dimer, parallel c	83.43
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	83.2
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	83.06
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	82.51
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	82.43
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	82.19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	82.17
3bas_A	89	Myosin heavy chain, striated muscle/general contro	82.1
1g6u_A	48	Domain swapped dimer; designed three helix bundle,	81.79
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	81.67
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	81.45
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	81.34
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	81.25
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	81.2
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	80.8
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	80.68
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	80.67
4ati_A	118	MITF, microphthalmia-associated transcription fact	80.63
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	80.6
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	80.43
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	80.06

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.49  E-value=3.2e-14  Score=105.25  Aligned_cols=53  Identities=40%  Similarity=0.553  Sum_probs=49.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      |+++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|++++.
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999999999877653

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.45  E-value=5.3e-13  Score=100.86  Aligned_cols=58  Identities=33%  Similarity=0.460  Sum_probs=53.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE  305 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E  305 (340)
                      ||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|+.++..|..-
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~   59 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI   59 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999998887777766643

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.43  E-value=5.5e-13  Score=99.93  Aligned_cols=57  Identities=33%  Similarity=0.457  Sum_probs=51.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  304 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~  304 (340)
                      ||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|+.++..|+.
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~   57 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ   57 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999877666666654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.38  E-value=6e-13  Score=100.13  Aligned_cols=57  Identities=30%  Similarity=0.444  Sum_probs=50.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  304 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~  304 (340)
                      |+++|+.+||+||++||.||++++++|+.+|+.|+.+|..|..+|..|+.++..|+.
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~   57 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ   57 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999887776666554

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.33  E-value=2e-12  Score=98.01  Aligned_cols=52  Identities=35%  Similarity=0.493  Sum_probs=44.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      .++++.+||+||+|||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus        10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455566999999999999999999999999999999999999988877653

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.26  E-value=1.3e-11  Score=93.37  Aligned_cols=57  Identities=30%  Similarity=0.478  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT  303 (340)
Q Consensus       247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~  303 (340)
                      .|+++++++||.||+|||.||++++++|+.+++.|+.+|..|+.+|..|+.|+..|+
T Consensus         1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk   57 (63)
T 1ci6_A            1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK   57 (63)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368899999999999999999999999999999999999999999977766655554

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.22  E-value=3e-11  Score=93.44  Aligned_cols=61  Identities=30%  Similarity=0.358  Sum_probs=56.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          250 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      .||+.+||.|+|.+|.||++||.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6899999999999999999999999999999999999999999888888888888887764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=99.01  E-value=9e-10  Score=88.47  Aligned_cols=63  Identities=25%  Similarity=0.319  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  309 (340)
Q Consensus       247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  309 (340)
                      .+...|+.+|.+||+|||.++++...+++.+++.|+.||..|+.+|..|+.++..|+.-...|
T Consensus        14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~   76 (87)
T 1hjb_A           14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            346777899999999999999999999999999999999999999977655555554444333

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.95  E-value=2.1e-09  Score=84.75  Aligned_cols=56  Identities=29%  Similarity=0.389  Sum_probs=49.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT  303 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~  303 (340)
                      +...|+.+|.+||+|||.++++...+++.++..|+.||..|+.+|..|+.++..|+
T Consensus        15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667889999999999999999999999999999999999999977766655554

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.85  E-value=7.4e-11  Score=98.03  Aligned_cols=62  Identities=26%  Similarity=0.350  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          241 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL  302 (340)
Q Consensus       241 ~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L  302 (340)
                      .++..++|..||+++||.+|+.||.||.+++++||.++..|..+.+.|..++..|+.+++.|
T Consensus        30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l   91 (107)
T 3a5t_A           30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL   91 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999777666665555555544444333333

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.61  E-value=2.5e-07  Score=74.66  Aligned_cols=68  Identities=22%  Similarity=0.357  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       243 DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +-.++|..||..+||.+|+-||.||.+++++||.++..|..+.       +.|+.++..+..|...++.++..|.
T Consensus        22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~-------~~L~~e~~~~~~e~d~~k~k~~~L~   89 (90)
T 2wt7_B           22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQV-------EQLKQEVSRLARERDAYKVKSEKLA   89 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4477889999999999999999999999988887666665554       4555555666677777777777665

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.40  E-value=0.0003  Score=49.12  Aligned_cols=36  Identities=36%  Similarity=0.493  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT  303 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~  303 (340)
                      |+|+.+||.+++.|+..|.+|..++..|+.|+..|+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR   37 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR   37 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            589999999999999999999999977755555444

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=97.05  E-value=0.00025  Score=57.06  Aligned_cols=32  Identities=19%  Similarity=0.442  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019499          245 RELKRQKRKQSNRESARRSRLRKQAECEELQA  276 (340)
Q Consensus       245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~  276 (340)
                      ..+|..||+.+||.+|++||+||.+.+++|+.
T Consensus        59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            45678899999999999999999999888763

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=96.72  E-value=0.0059  Score=44.30  Aligned_cols=48  Identities=42%  Similarity=0.551  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      .++|-++|+.|+.||..||.|++.=..++.+|+.|-.-+++-+..|++
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~   52 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence            578999999999999999999999999999999999999999988864

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.48  E-value=0.011  Score=46.67  Aligned_cols=55  Identities=31%  Similarity=0.382  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  326 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~  326 (340)
                      .+.-|+.+++.|+.+|..|..++..++...+.|..||.+|+++....+  +.|+.|-
T Consensus        21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq--~Rl~~LL   75 (81)
T 2jee_A           21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            344555666666666666666666666555556666666666665554  4444443

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=96.32  E-value=0.012  Score=48.12  Aligned_cols=48  Identities=25%  Similarity=0.329  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          269 AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +++-+||.+++.|+.||..|+.       +|..|..+++.|+.||..|+.+-+.-
T Consensus        37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~   91 (104)
T 3s9g_A           37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH   91 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556788899999888888877       78888888888888888888775544

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=96.10  E-value=0.026  Score=48.37  Aligned_cols=52  Identities=17%  Similarity=0.273  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +.+++++.|+.+++.+..|+..|+.++..++.+++.+..++..|+.++..|+
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~  123 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ  123 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566666666666666666666666666666666666666666666655

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=95.99  E-value=0.032  Score=41.18  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=37.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          251 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       251 rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      +++-+||.++|+||.|=++.++-...-                     ...-..||.+|+.-|.+++..-++..+..
T Consensus         4 ~kryknr~asrk~rakfkn~lqh~r~v---------------------aaaks~en~rlr~l~kqmcpsldvdsiip   59 (63)
T 2c9l_Y            4 IKRYKNRVAARKSRAKFKQLLQHYREV---------------------AAAKSSENDRLRLLLKQMCPSLDVDSIIP   59 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHCTTCCHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhhcccchHHHHHHHHhCCcccccccCC
Confidence            445679999999999877655544322                     23345677788888888876655554433

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=95.92  E-value=0.031  Score=41.85  Aligned_cols=41  Identities=34%  Similarity=0.506  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  311 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  311 (340)
                      +..-|.+|..|-.-|..|.+|+..|+.+++.|.+||..|+.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            34558899999999999999999999999999999999973

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.88  E-value=0.03  Score=44.27  Aligned_cols=52  Identities=33%  Similarity=0.440  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      =|-++++|+.+-..|..+++.++.....|..++++|+.|...+..+|..|-|
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg   76 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888888888888888888888888888888888888888888888764

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=95.68  E-value=0.046  Score=38.27  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      .+.+||.+|..|+.||+.|+.+.-.-+.-+..|+.|...|+.+|+
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie   48 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE   48 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence            467899999999999999999888888888999999999998875

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=95.42  E-value=0.044  Score=44.91  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          295 LSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       295 L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      .++++++|+.|+..|+.+|..|..
T Consensus        73 ~~~~~e~Lq~E~erLr~~v~~lEe   96 (100)
T 1go4_E           73 LREDHSQLQAECERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455667777777777777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.26  E-value=0.15  Score=51.11  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +++++.+.|+.|..+|+.+++..++....|+.|+..++++|+++.
T Consensus       534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555555555555555555555555555555543

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=95.25  E-value=0.019  Score=38.15  Aligned_cols=27  Identities=41%  Similarity=0.622  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      +.+||.+|+.|-.+|..|..++.+|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            568999999999999999999988865

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=95.25  E-value=0.071  Score=38.24  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      ++++..|+.-|..|..++..|+..|..++.|+.+|+.-|.+
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq   43 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ   43 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999988765

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=95.22  E-value=0.026  Score=37.68  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEE  298 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e  298 (340)
                      +++.+||.+|+.|-.+|.+|..++.+|+.-
T Consensus         1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~l   30 (34)
T 2oxj_A            1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXL   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            357889999999999999999998888653

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=95.02  E-value=0.071  Score=39.78  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      ..+.+.|+.+...|..+...|+.++..|+.|+..|+.-|.+
T Consensus        22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e   62 (63)
T 1ci6_A           22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34567777788888888888888888888888888776654

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=94.95  E-value=0.054  Score=36.54  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      +++.+||.+|+.|-.+|..|..++.+|++-+.
T Consensus         1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~   32 (36)
T 1kd8_B            1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNA   32 (36)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            35788999999999999999999988876543

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=94.95  E-value=0.12  Score=40.98  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .||..|..+|..|++++..|+.+|..|++-....
T Consensus        46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~   79 (83)
T 1uii_A           46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999998776654

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=94.94  E-value=0.31  Score=42.57  Aligned_cols=75  Identities=13%  Similarity=0.022  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      ..+.+..++..+.+..-++.=.....++.+-..-++.|..|...|+-++..+..+...|+.||..|-+++.+-.+
T Consensus        64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~  138 (152)
T 3a7p_A           64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE  138 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444445555666667788899999999999999999999999999988888766543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.86  E-value=0.16  Score=43.41  Aligned_cols=50  Identities=18%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .+.+++++.++..|..++..++.+++.++++++.|+.++..|..++.+|.
T Consensus        81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.80  E-value=0.14  Score=51.31  Aligned_cols=12  Identities=25%  Similarity=0.340  Sum_probs=5.2

Q ss_pred             hhhhhhhhcCCC
Q 019499          320 EAVANLEQSNPT  331 (340)
Q Consensus       320 ~~~~~L~~~~~~  331 (340)
                      ..+..|++..+.
T Consensus       572 ~~~~~l~~~~~~  583 (597)
T 3oja_B          572 QKVKQLEAKKNR  583 (597)
T ss_dssp             HHHHHHHHTTC-
T ss_pred             HHHHHHHHHhcC
Confidence            444555554443

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=94.77  E-value=0.072  Score=39.26  Aligned_cols=41  Identities=20%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      |+++..|+..|..|..++..|+..|...+.|+.+|..-|++
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq   50 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ   50 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999887765

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=94.75  E-value=0.065  Score=44.60  Aligned_cols=45  Identities=11%  Similarity=0.179  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ..|+.++..|+..|..|...|..|...+..|+...+....-|.++
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~   82 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF   82 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence            334444444444444444444444444444444444444433333

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=94.72  E-value=0.047  Score=36.84  Aligned_cols=31  Identities=35%  Similarity=0.544  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      ++.+||.+|+.|..+|..|..++.+|++.+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~   32 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKENA   32 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            5678999999999999999999988876554

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=94.65  E-value=0.057  Score=42.49  Aligned_cols=48  Identities=25%  Similarity=0.419  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +++++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus         7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~   54 (79)
T 3cvf_A            7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA   54 (79)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777788888888888888888888888877777777777766654

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=94.53  E-value=0.33  Score=39.01  Aligned_cols=54  Identities=17%  Similarity=0.342  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +|.|++-+-|...  -+...+ .+...|..++..|..+.+.|..||..+..++..+.
T Consensus        29 ~RRtlKNRgyAq~--CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k   82 (90)
T 2wt7_B           29 KRRTLKNRGYAQS--CRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK   82 (90)
T ss_dssp             HHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444332  233333 34466777788888888888888888888777664

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=94.52  E-value=0.05  Score=36.22  Aligned_cols=30  Identities=10%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEE  298 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e  298 (340)
                      +++.+||.+|+.|-.+|..|..++.+|+.-
T Consensus         1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~l   30 (34)
T 3c3f_A            1 XRMXQIEXKLEXILSXLYHXENEXARIXKL   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            357889999999999999999999888653

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=94.29  E-value=0.14  Score=40.22  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .||..|..+|..+++++..|+.||..|++-+...+
T Consensus        34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~   68 (79)
T 2zxx_A           34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47888999999999999999999998887766654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=94.13  E-value=0.29  Score=35.90  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      .+..|+.+...|..+...|+.++..|+.|+..|+..|
T Consensus        23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3555666666666666666666666666666666554

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=94.10  E-value=0.13  Score=40.12  Aligned_cols=50  Identities=18%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +++++||.++.-++.-..+|...|...+.++..|+.+.+.|..+|..+..
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~   63 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            56788999999999999999999999999999999999999998888763

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=94.06  E-value=0.073  Score=35.27  Aligned_cols=28  Identities=7%  Similarity=0.311  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEE  298 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e  298 (340)
                      +.+||.+|+.|-.+|..|..++.+|+.-
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l   29 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXL   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5789999999999999999998888653

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=94.02  E-value=0.21  Score=36.13  Aligned_cols=39  Identities=23%  Similarity=0.420  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  309 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  309 (340)
                      +.+|+.++..|...|..|..-+...+.++..|+.|...|
T Consensus        11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A           11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666666666666666666655555555555554443

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=93.96  E-value=0.18  Score=35.10  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      +..|+.+-.+|..++..|.+.+..|..||..||.-|.
T Consensus         5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~   41 (42)
T 2oqq_A            5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILK   41 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            4567777777777777777777777777777776553

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=93.95  E-value=0.22  Score=36.11  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +.++..|+.++..|..++..|.+.+...+.|...|+++|.+|.
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6677788888888888888888888888888888888888774

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=93.91  E-value=0.0052  Score=49.40  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH
Q 019499          245 RELKRQKRKQSNRESARRSRLRKQA  269 (340)
Q Consensus       245 ~e~KR~rRk~~NRESARRSR~RKq~  269 (340)
                      ..+|..||+-+||++|++||+||.+
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5567889999999999999999964

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=93.83  E-value=0.14  Score=46.17  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499          303 TSENNSIKEDLSRLCGPEAVANLEQSNPT  331 (340)
Q Consensus       303 ~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~  331 (340)
                      ..|+..|+.....|.  ..|++|++.||+
T Consensus        94 q~el~~l~~~~~~l~--~~ireLEq~NDd  120 (189)
T 2v71_A           94 EDDLSQTRAIKEQLH--KYVRELEQANDD  120 (189)
T ss_dssp             HHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHhhH
Confidence            333334444444444  556666666554

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=93.80  E-value=0.29  Score=41.08  Aligned_cols=42  Identities=33%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +.+|+.|+.|+..|..+|..+..+++.|+.+|..|..+|..-
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~  111 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence            335777777777777777777777888888888777776553

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=93.80  E-value=0.24  Score=38.31  Aligned_cols=46  Identities=20%  Similarity=0.403  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~   48 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL   48 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677777777777777777777777777766666666666554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=93.76  E-value=0.58  Score=34.65  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      +..|+.+...|..+...|+.++..|..|...|+..|
T Consensus        25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555555544443

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=93.75  E-value=0.057  Score=50.70  Aligned_cols=42  Identities=21%  Similarity=0.398  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      ..+.+|+.++..|...|..|..+++.+++++..|+.|+..|+
T Consensus        54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~   95 (251)
T 3m9b_A           54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   95 (251)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566666666666666666666555555555555554443

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=93.71  E-value=0.2  Score=39.72  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      .||..|..+|..+++++..|+.||..|++-...
T Consensus        38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~   70 (83)
T 1wlq_A           38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH   70 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478888888888888888888888888766554

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=93.70  E-value=0.076  Score=35.45  Aligned_cols=28  Identities=14%  Similarity=0.461  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      ++.+||.+|+.|-.+|..|..++.+|++
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            5678999999999999999999888865

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=93.67  E-value=0.078  Score=35.39  Aligned_cols=28  Identities=14%  Similarity=0.362  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      ++.+||.+|+.|-.+|..|..++.+|++
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678999999999999999999888865

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=93.66  E-value=0.18  Score=46.02  Aligned_cols=29  Identities=31%  Similarity=0.501  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          284 ENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      ||..|..+|..|++++..|+.||..|++-
T Consensus       116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeL  144 (209)
T 2wvr_A          116 ENEKLHKEIEQKDNEIARLKKENKELAEV  144 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555543

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=93.43  E-value=0.55  Score=37.39  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEK  301 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~  301 (340)
                      ++++|+.+-..|+.++..|..++..|+.-+.+
T Consensus        44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~   75 (87)
T 1hjb_A           44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444333

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=93.34  E-value=0.12  Score=34.88  Aligned_cols=30  Identities=30%  Similarity=0.502  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          282 SNENRNLRDELQRLSEECEKLTSENNSIKE  311 (340)
Q Consensus       282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  311 (340)
                      -.||..|..+|+.-.+++..|+.||..|++
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E   35 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELAE   35 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            358999999999999999999999998874

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=93.33  E-value=0.12  Score=34.30  Aligned_cols=27  Identities=15%  Similarity=0.292  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      +.+||.+|+.|-.+|..|..++.+|++
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            578999999999999999888888765

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=93.30  E-value=0.15  Score=37.03  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      ..++.|+.||.+|+.++       +.|..++..|+.+|.
T Consensus        19 ~d~eaLk~E~~eLk~k~-------~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKY-------EAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence            34555555555555555       444555555555554

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=93.28  E-value=0.098  Score=34.87  Aligned_cols=29  Identities=28%  Similarity=0.476  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEE  298 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e  298 (340)
                      ++.+||.+|+.|-.+|..|..++.+|++-
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l   30 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKA   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46789999999999999999999888653

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=93.17  E-value=0.14  Score=37.12  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 019499          273 ELQARVETLSNENRNLRDELQRL  295 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L  295 (340)
                      .|..+++.|+.++..|..++..|
T Consensus        23 aLk~E~~eLk~k~~~L~~~~~el   45 (53)
T 2yy0_A           23 LLRLELAEMKEKYEAIVEENKKL   45 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=93.15  E-value=0.72  Score=35.97  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRL  295 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L  295 (340)
                      +++|+.+-..|+.++..|..++..|
T Consensus        45 ~~~L~~eN~~L~~~v~~L~~E~~~L   69 (78)
T 1gu4_A           45 VLELTAENERLQKKVEQLSRELSTL   69 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=93.08  E-value=0.38  Score=39.54  Aligned_cols=47  Identities=17%  Similarity=0.184  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      ..++++++.+..|+.|+.+...++..++..+..|..+...|+.+|.+
T Consensus        37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q   83 (103)
T 4h22_A           37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666554

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=92.82  E-value=0.41  Score=36.92  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      ...|..++..|+.+++.|+.+|..|+.+|..|.+
T Consensus        49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~   82 (83)
T 1nkp_B           49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567777777888888888899999999888765

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=92.64  E-value=0.49  Score=36.23  Aligned_cols=31  Identities=26%  Similarity=0.322  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEK  301 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~  301 (340)
                      +.+|+.....|..||..|+.+|..|..++..
T Consensus        38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~~   68 (70)
T 1gd2_E           38 VVTLKELHSSTTLENDQLRQKVRQLEEELRI   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444455555555444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.48  E-value=0.71  Score=50.97  Aligned_cols=15  Identities=27%  Similarity=0.430  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHh
Q 019499          302 LTSENNSIKEDLSRL  316 (340)
Q Consensus       302 L~~EN~~Lk~eL~~L  316 (340)
                      |+.||..|+.++.+|
T Consensus      1028 L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A         1028 LKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444444433

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=91.61  E-value=0.18  Score=47.30  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCC
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP  330 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~  330 (340)
                      +.+++.|+.++..|..++..|.+++..|+.|+..|+++|.+|.. +..+.++...++
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~d  109 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHD  109 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcC
Confidence            67889999999999999999999999999999999999999976 334444444443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=91.61  E-value=2  Score=33.83  Aligned_cols=60  Identities=15%  Similarity=0.279  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          256 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       256 NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      |=.||-.+-.|-|+   .+.+++...+..|..+.++|.....++..|..|...|+.+|..|+.
T Consensus        14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~   73 (81)
T 1wt6_A           14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44444444444442   4455667788888888889989999999999999999999988764

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=91.60  E-value=0.25  Score=31.99  Aligned_cols=30  Identities=33%  Similarity=0.568  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEEC  299 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~  299 (340)
                      ++..||.+|...+.||-+|.+++..|..+|
T Consensus         2 evaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            466788888888899988888888887665

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=91.50  E-value=1.6  Score=34.30  Aligned_cols=50  Identities=14%  Similarity=0.199  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      -+-+|..+++.|+.|+..|+-+++.+..+++.|....+.+-..|......
T Consensus        21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~   70 (83)
T 2xdj_A           21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG   70 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34668888888888888888888888888888877777776666554433

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=91.22  E-value=0.88  Score=33.91  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      -......|..++..|+.++..|..|+..|+++|
T Consensus        28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566666666555555555555555554

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=91.20  E-value=1.6  Score=32.06  Aligned_cols=33  Identities=21%  Similarity=0.418  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ....|..++..|..++..|..+...|+.++..|
T Consensus        23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L   55 (62)
T 1jnm_A           23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL   55 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=91.18  E-value=0.64  Score=45.82  Aligned_cols=52  Identities=15%  Similarity=0.273  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      .++++++|+++++.|+.++..|..++..|++++...+.+.+.|..+|.+|.|
T Consensus         8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg   59 (403)
T 4etp_A            8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG   59 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4566777777778888888888888888888888888888888888888876

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=91.16  E-value=1  Score=35.43  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      ...|..+...|..+++.|+.+|..|+.+|..|.+
T Consensus        54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~   87 (88)
T 1nkp_A           54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG   87 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567777778888888899999999999998875

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=91.09  E-value=0.96  Score=34.93  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDEL  292 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el  292 (340)
                      .+++|+.++..++.++..|+.++
T Consensus        41 ~I~eLEk~L~ekd~eI~~LqseL   63 (72)
T 3nmd_A           41 LIDELELELDQKDELIQMLQNEL   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=91.08  E-value=2.3  Score=35.30  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          256 NRESARRSRLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       256 NRESARRSR~RKq~~leeLE~rv~~Le~---EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      |=.+|.+.=..|+..|++|++++..++.   .+.-|+.++...+..+..-+..-..|..+...|
T Consensus        32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L   95 (110)
T 2v4h_A           32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYL   95 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHH
Confidence            3345555556677777777777777666   455566666666665554444333333333333

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=90.83  E-value=0.77  Score=35.67  Aligned_cols=55  Identities=22%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  328 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~  328 (340)
                      ++|+.|+..|+....-+..-|+.|...+.....+...|+.+|..|.  +.+..+...
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~~~   64 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRST   64 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhc
Confidence            5788999999999999999999999999999999999999999987  666666654

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=90.82  E-value=0.71  Score=45.76  Aligned_cols=51  Identities=22%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      .+++++|+++++.|+.++.++..++..+++++.+...+.+.|..+|.+|.|
T Consensus         9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g   59 (412)
T 3u06_A            9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD   59 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            356777788888888888888888888888888888888888888888876

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=90.65  E-value=1.7  Score=31.22  Aligned_cols=48  Identities=15%  Similarity=0.210  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      .+..+++++.++..++.+...+..++..+.+.+...+.+...|+.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~   57 (60)
T 3htk_A           10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555555555544

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=90.57  E-value=5.3  Score=32.05  Aligned_cols=23  Identities=4%  Similarity=0.163  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 019499          265 LRKQAECEELQARVETLSNENRN  287 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~  287 (340)
                      .++-+++..|..++..|+.+...
T Consensus        40 ~~~E~Ei~sL~kk~~~lE~eld~   62 (101)
T 3u1c_A           40 KQLEDDIVQLEKQLRVTEDSRDQ   62 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.32  E-value=0.9  Score=50.16  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      +++.++..|+.|+.+|++++..+.++.+.|+.++..|+
T Consensus       981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555555554444444444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=90.23  E-value=1.3  Score=35.55  Aligned_cols=29  Identities=17%  Similarity=0.366  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      +++.+|+.+-..|..+...|..+...|..
T Consensus        25 ~eL~~lEke~~~l~~el~~le~E~~~L~~   53 (96)
T 3q8t_A           25 QELEDVEKNRKVVAENLEKVQAEAERLDQ   53 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444444444444444433

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=90.13  E-value=0.49  Score=31.64  Aligned_cols=29  Identities=14%  Similarity=0.341  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          288 LRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ++.++...+++++.|+.+|..|.+++..|
T Consensus         5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l   33 (34)
T 1a93_B            5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence            34455555555566666666666666554

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=90.06  E-value=0.44  Score=31.76  Aligned_cols=28  Identities=14%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      ++.+||.+|+.|-.++..|..++.+|++
T Consensus         2 RMnQledKvEel~~~~~~l~nEv~Rl~~   29 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYHNANELARVAK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4678888999888888888888877764

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=89.99  E-value=0.5  Score=36.90  Aligned_cols=42  Identities=31%  Similarity=0.483  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      +|-.||+.|..|+..|+.++..+++-..+++..+..|.++|.
T Consensus        34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk   75 (77)
T 2w83_C           34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555555555555555554444444444444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=89.63  E-value=4.3  Score=35.92  Aligned_cols=58  Identities=29%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      .+.-=+.-|+.|.+-.+.+.+|+.++..|+.|...++..+       ..+..+|..|.++|..|.
T Consensus        74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~-------~k~~~e~r~L~Ekl~~lE  131 (168)
T 3o0z_A           74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL-------EKVEGERKEAQDMLNHSE  131 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            3444445566666666666666666666666555554444       344444444444444443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=89.46  E-value=3.2  Score=33.54  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499          254 QSNRESARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  329 (340)
Q Consensus       254 ~~NRESARRSR~RKq~~leeLE~rv~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~  329 (340)
                      ..|-.+|-..=..|+..|++|.+++..++   ..+.-|+.++...+..+..-++.-.+|..+...|.  ..++.|...+
T Consensus         8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~--~ql~~lq~q~   84 (94)
T 3jsv_C            8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ--EQLEQLQREF   84 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH--HHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHH
Confidence            34556777777889999999998888888   56667888888888888777766666666666665  5555555544

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=89.37  E-value=3.1  Score=34.75  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  309 (340)
Q Consensus       263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  309 (340)
                      ....-+.++.+|+.+|..|+.|...-+.....+..+|+.|+.|+..|
T Consensus        34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l   80 (120)
T 3i00_A           34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL   80 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566667777777777777777666666555555555555555544

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=89.35  E-value=2.8  Score=33.20  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          291 ELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       291 el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +|..-+++++.|+.+..+++..|..|
T Consensus        52 el~~h~~ei~~le~~i~rhk~~i~~l   77 (84)
T 1gmj_A           52 EISHHAKEIERLQKEIERHKQSIKKL   77 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444454444444

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.01  E-value=7.7  Score=31.08  Aligned_cols=56  Identities=14%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          257 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       257 RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      .+.|...-..-+..+..++.+...++.+...|..++..|..+++.+.......+.+
T Consensus        18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k   73 (101)
T 3u1c_A           18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS   73 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33343333333444444444444555555555555555544444444443333333

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=88.84  E-value=0.49  Score=36.47  Aligned_cols=27  Identities=11%  Similarity=0.126  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLS  296 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~  296 (340)
                      ||..|+.++..|+.+...|+.++..|+
T Consensus        48 YI~~L~~~~~~l~~e~~~L~~~~~~L~   74 (83)
T 1nkp_B           48 YIQYMRRKNHTHQQDIDDLKRQNALLE   74 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.71  E-value=2.1  Score=34.74  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          293 QRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       293 ~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ..-+.+...++..|..|+++|.+.
T Consensus        72 a~ar~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           72 ADARKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334556667777788888877653

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=88.64  E-value=1.9  Score=33.23  Aligned_cols=45  Identities=24%  Similarity=0.238  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +-+.++..|+....--.+-.++|..++-.|--||.-|.++|..|+
T Consensus        29 ~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~   73 (75)
T 3a7o_A           29 SKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK   73 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence            334445555554444445567788888899999999999998875

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=88.36  E-value=0.79  Score=35.43  Aligned_cols=29  Identities=10%  Similarity=0.153  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          289 RDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       289 r~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ...|..|..++..+..++..|+.+|-+++
T Consensus        39 d~~I~eLEk~L~ekd~eI~~LqseLDKfr   67 (72)
T 3nmd_A           39 DALIDELELELDQKDELIQMLQNELDKYR   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444445555555555555443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.35  E-value=2.5  Score=32.57  Aligned_cols=46  Identities=22%  Similarity=0.310  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      .++.++.+++..+..+..+..+|..|++.+..|+.+...+.++|..
T Consensus        21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~   66 (81)
T 1ic2_A           21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444433

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=88.18  E-value=0.87  Score=35.36  Aligned_cols=29  Identities=21%  Similarity=0.412  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          287 NLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      .|+.+...|..+++.|+.||..|+.+|..
T Consensus        51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~~   79 (80)
T 1nlw_A           51 KLEDSDRKAVHQIDQLQREQRHLKRQLEK   79 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444444445555555555555543

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=88.07  E-value=6.4  Score=30.74  Aligned_cols=53  Identities=25%  Similarity=0.330  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ...+++++.|.+--+.|..=-..|..-|.+|..+...|......|+.+.+.|.
T Consensus        21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~   73 (78)
T 3iv1_A           21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666666666777777777777777777777777777765

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=87.98  E-value=1.1  Score=46.09  Aligned_cols=15  Identities=13%  Similarity=0.215  Sum_probs=7.0

Q ss_pred             hHHHHHHHHHHHHhH
Q 019499          243 DERELKRQKRKQSNR  257 (340)
Q Consensus       243 DE~e~KR~rRk~~NR  257 (340)
                      -|++++....+++|+
T Consensus        58 qErDltkrINELKnq   72 (562)
T 3ghg_A           58 VNQDFTNRINKLKNS   72 (562)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHH
Confidence            344455444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=87.97  E-value=7.6  Score=29.76  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          257 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       257 RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .+.|...-..-...+.+.+.+...++.+...|..+|..|..+++.+.........+|..-
T Consensus        15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A           15 KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555556667777777777888888888888888888887777777777776654

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=87.80  E-value=1.5  Score=45.07  Aligned_cols=46  Identities=15%  Similarity=0.207  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  311 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  311 (340)
                      .+.++.++|++++..|+.+...-...|..|+..++.++.+.++|..
T Consensus       107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv  152 (562)
T 3ghg_A          107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV  152 (562)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445666666666555544445555555555555555555543

>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}

Probab=87.78  E-value=0.24  Score=45.98  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      .++.+.|++||.+|+.++.    +++.|+.||.+|++.|..
T Consensus        25 ~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~   61 (255)
T 2j5u_A           25 YTENQHLKERLEELAQLES----EVADLKKENKDLKESLDI   61 (255)
T ss_dssp             -CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence            3334444444444444333    346788899999887664

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=87.71  E-value=1.1  Score=28.99  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          285 NRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       285 N~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      ...|++++..|++++..|+-|...|+
T Consensus         4 iaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            4 IAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555554

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=87.49  E-value=4.6  Score=39.32  Aligned_cols=18  Identities=22%  Similarity=0.399  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 019499          298 ECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       298 e~~~L~~EN~~Lk~eL~~  315 (340)
                      ++++|+.|...|..+|+.
T Consensus       444 ~~~~~~~~~~~~~~~~~~  461 (471)
T 3mq9_A          444 KVEELEGEITTLNHKLQD  461 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444443333

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=87.33  E-value=1.6  Score=31.65  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          292 LQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       292 l~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +..|..++..|..||..|+.+|..|.
T Consensus        24 ~~~LE~~v~~L~~eN~~L~~~~~~L~   49 (55)
T 1dh3_A           24 VKSLENRVAVLENQNKTLIEELKALK   49 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555556666666666666654

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.32  E-value=6.1  Score=32.80  Aligned_cols=47  Identities=13%  Similarity=0.234  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +.+.+.++..|......|..+|..|...++.....|..|...-..+.
T Consensus        64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle  110 (129)
T 2fxo_A           64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE  110 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=87.27  E-value=9.8  Score=30.28  Aligned_cols=18  Identities=22%  Similarity=0.322  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 019499          267 KQAECEELQARVETLSNE  284 (340)
Q Consensus       267 Kq~~leeLE~rv~~Le~E  284 (340)
                      +-.++..|..++..|+.+
T Consensus        42 ~E~ei~sL~kKiq~lE~e   59 (101)
T 3u59_A           42 LEEEQQGLQKKLKGTEDE   59 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=87.16  E-value=12  Score=31.30  Aligned_cols=46  Identities=15%  Similarity=0.237  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +.|+.+...-.....+|+.||..|.++++.+..|..+|+.+...+.
T Consensus        60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~  105 (121)
T 3mq7_A           60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS  105 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence            3444433333444667777777777777777777777777766553

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=87.05  E-value=3.4  Score=29.88  Aligned_cols=44  Identities=2%  Similarity=0.139  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  313 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL  313 (340)
                      .+++|..+|..|..+...|..++..|+.+++..+.|-.+--.+|
T Consensus         5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl   48 (52)
T 1jcd_A            5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46667777777777777777777766666666665555554444

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=86.88  E-value=12  Score=30.93  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 019499          273 ELQARVETLSNENRNLRDELQR  294 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~  294 (340)
                      +|..++..|..|+..++.++..
T Consensus         7 dL~~~~~~L~~E~e~~k~K~~~   28 (111)
T 2v66_B            7 DLQADNQRLKYEVEALKEKLEH   28 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443333

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=86.88  E-value=4.1  Score=32.06  Aligned_cols=53  Identities=21%  Similarity=0.327  Sum_probs=37.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE  305 (340)
Q Consensus       253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E  305 (340)
                      -++.+.+-++-=.+=+.....++.++...+..|.+|..++..|+++++.|+.+
T Consensus        22 EIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~   74 (81)
T 1wt6_A           22 EVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34445555444455556667778888888889999988888888888887654

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=86.81  E-value=3.9  Score=36.18  Aligned_cols=51  Identities=22%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      -|+||++  .+|...+..++..+.+|+..+..|......|..++..|..+|..
T Consensus        30 ~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q   80 (168)
T 3o0z_A           30 VRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA   80 (168)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455554  55555566666666666666666666666666666555555543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.78  E-value=1.1  Score=44.65  Aligned_cols=47  Identities=17%  Similarity=0.266  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      .+|..+++.|+.+...|..+.+.|+++...|+.|...|++++..++.
T Consensus        45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~   91 (428)
T 4b4t_K           45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS   91 (428)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45555666666666666666666666666677777777777777765

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=86.69  E-value=2  Score=33.60  Aligned_cols=49  Identities=20%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRL------SEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L------~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      |.+++.|+.+++.|+.+...|..+|..-      -.++..|..+...|..+|..+
T Consensus        21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~   75 (89)
T 2lw1_A           21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA   75 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888888888888888887776421      133444455555555554443

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=86.68  E-value=7.2  Score=30.02  Aligned_cols=68  Identities=22%  Similarity=0.256  Sum_probs=39.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          250 QKRKQSNRESARRSRLRKQAECEELQARVETL---SNENRNLR---DELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~L---e~EN~~Lr---~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..|+.....+-|+.|.+=...+.+|..-|-..   .....-|.   .=|..|+.+.+.|..|+..|+.++....
T Consensus         4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~   77 (82)
T 1am9_A            4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34445555666667766677777777644321   00111122   2345566777777788888887777653

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=86.55  E-value=2.2  Score=34.98  Aligned_cols=49  Identities=10%  Similarity=0.182  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  318 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g  318 (340)
                      +++-|..+++.++....+|+.++....++++.++..+..|+.++..++.
T Consensus        31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~   79 (103)
T 4h22_A           31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE   79 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688889999999999999999999999999999999999999998874

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=86.54  E-value=4.2  Score=29.09  Aligned_cols=47  Identities=19%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +..|+..+..+..+...++.++..++..+..+..+....+..|..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k   53 (60)
T 3htk_A            7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK   53 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666553

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=86.53  E-value=3.2  Score=33.14  Aligned_cols=52  Identities=21%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          258 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  309 (340)
Q Consensus       258 ESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  309 (340)
                      +.|...-..-+..+..++.+...++.+...|..++..|..+++.+......+
T Consensus        19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a   70 (101)
T 3u59_A           19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA   70 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444444444444444444433333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=86.46  E-value=1.8  Score=47.92  Aligned_cols=6  Identities=17%  Similarity=0.135  Sum_probs=2.7

Q ss_pred             CCcccc
Q 019499           59 HPYLWG   64 (340)
Q Consensus        59 hPYmWg   64 (340)
                      ||++..
T Consensus       565 ~~~~~~  570 (1184)
T 1i84_S          565 HAKFQK  570 (1184)
T ss_dssp             CTTEEE
T ss_pred             CCCccC
Confidence            444443

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=86.32  E-value=1.2  Score=40.11  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      |..|..||..|..+++....+++.|+.+...|+.+
T Consensus        22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~   56 (190)
T 4emc_A           22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ   56 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33344444444444444444444444433333333

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=86.04  E-value=9.1  Score=28.68  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=33.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          251 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       251 rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      .-..+||+-|-..=..   .+++|...+..-..+....+.+|..|+..++.|+.|...||
T Consensus        20 ~ia~knr~EaE~~y~~---k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk   76 (77)
T 3trt_A           20 SVAAKNLQEAEEWYKS---KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344565544432222   24566666666666666666677777666666666666654

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=85.60  E-value=6.1  Score=34.42  Aligned_cols=33  Identities=30%  Similarity=0.357  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLT  303 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~  303 (340)
                      ++.|..++..|+-++..|..++..|++|+..|.
T Consensus        98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A           98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444443

>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}

Probab=85.47  E-value=4.6  Score=31.02  Aligned_cols=47  Identities=13%  Similarity=0.196  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +++.++..+..|+.+...++.++.....+++.|..-.-.|-.+|...
T Consensus         6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY   52 (74)
T 2xv5_A            6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY   52 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666666666676666666666666553

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=85.42  E-value=8.7  Score=35.05  Aligned_cols=22  Identities=9%  Similarity=0.214  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 019499          273 ELQARVETLSNENRNLRDELQR  294 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~  294 (340)
                      .|+.+++.++.++..|..++..
T Consensus        94 aL~kEie~~~~~i~~lE~eile  115 (256)
T 3na7_A           94 SLNIEEDIAKERSNQANREIEN  115 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=85.36  E-value=4.6  Score=31.71  Aligned_cols=41  Identities=12%  Similarity=0.220  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE  305 (340)
Q Consensus       265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E  305 (340)
                      ..=+..+++|+.+|..|+..++++.-+|+.|++....+-.+
T Consensus        23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d   63 (83)
T 2xdj_A           23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555554444444433

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=85.28  E-value=0.5  Score=36.77  Aligned_cols=42  Identities=26%  Similarity=0.454  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499          284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  329 (340)
Q Consensus       284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~  329 (340)
                      |.+.|+.+|..|.+++.+|+.||..||.    +..++.|..|...+
T Consensus        16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~----~aspEql~q~q~~l   57 (78)
T 1dip_A           16 EVEILKEQIRELVEKNSQLERENTLLKT----LASPEQLEKFQSRL   57 (78)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSSCSCCCSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHhcc
Confidence            4456677777777778888888888775    44566666665555

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=85.17  E-value=1.7  Score=34.18  Aligned_cols=32  Identities=28%  Similarity=0.271  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      +||..|+.+...|..+...|+.+...|+.+++
T Consensus        52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~   83 (88)
T 1nkp_A           52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLE   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444433333333

>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}

Probab=85.16  E-value=1.6  Score=39.96  Aligned_cols=55  Identities=13%  Similarity=0.189  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  327 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~  327 (340)
                      .|+.+++.|+.++.+|+.++-++..+++-++....+=++++........+.+|..
T Consensus        63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLp  117 (213)
T 4ani_A           63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLP  117 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3344444444444444444444444444444444444444444444344444333

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=85.05  E-value=4.2  Score=31.31  Aligned_cols=49  Identities=22%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..+..|+.+++.-+.+-..++.++..+.+.+..-..|...|+..|.+|-
T Consensus        21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~   69 (72)
T 3cve_A           21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence            3445555555555555566666666666666666666777777666653

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=84.98  E-value=13  Score=29.59  Aligned_cols=66  Identities=18%  Similarity=0.262  Sum_probs=26.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          251 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       251 rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ....++|+....-....+++.+.|..+=..+-.+-..++.++-.+..+...|.++..-...+|.+|
T Consensus        28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL   93 (96)
T 3q8t_A           28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL   93 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444443333333333333333333333333333344444444444444444444444443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=84.94  E-value=4.2  Score=31.69  Aligned_cols=44  Identities=25%  Similarity=0.359  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          274 LQARVETLSNENRNLRDEL-------QRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       274 LE~rv~~Le~EN~~Lr~el-------~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +-.+|+.|-.||.+|.+--       +.|-.+.+.|..|+..|+.+|..++
T Consensus         7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~   57 (77)
T 2w83_C            7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK   57 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4455556666665554321       2233345555555555555555554

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=84.70  E-value=4.8  Score=33.36  Aligned_cols=49  Identities=18%  Similarity=0.313  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .+.+...|.+++.|+.++.+|+.+++....-...|-.+|..|...+...
T Consensus        10 ~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~   58 (125)
T 1joc_A           10 LERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA   58 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence            3445555667777888888888888777777777777777777655544

>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A

Probab=84.64  E-value=0.89  Score=33.13  Aligned_cols=29  Identities=14%  Similarity=0.229  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSE  297 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~  297 (340)
                      +.++++...++.|..||..|+.++..|++
T Consensus        27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~   55 (57)
T 2wuj_A           27 EFLAQVRKDYEIVLRKKTELEAKVNELDE   55 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555555556666666666555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.46  E-value=9.8  Score=37.11  Aligned_cols=43  Identities=19%  Similarity=0.156  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      ++|.+.+.++++....+.+++.|+++.+.|+.++..|..++.+
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (487)
T 3oja_A          425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS  467 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence            3333333344444444444444444444444444444444433

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=84.46  E-value=4.3  Score=28.63  Aligned_cols=15  Identities=27%  Similarity=0.463  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 019499          288 LRDELQRLSEECEKL  302 (340)
Q Consensus       288 Lr~el~~L~~e~~~L  302 (340)
                      |.+-+..|+.++..|
T Consensus        29 lekiianlrdeiarl   43 (52)
T 3he5_B           29 LEKIIANLRDEIARL   43 (52)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=84.40  E-value=16  Score=32.76  Aligned_cols=13  Identities=8%  Similarity=0.043  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHH
Q 019499          280 TLSNENRNLRDEL  292 (340)
Q Consensus       280 ~Le~EN~~Lr~el  292 (340)
                      .|+..+..|+..|
T Consensus        99 ~l~~~~~~l~~~i  111 (189)
T 2v71_A           99 QTRAIKEQLHKYV  111 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=84.28  E-value=10  Score=29.60  Aligned_cols=55  Identities=24%  Similarity=0.369  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      -|.|=++.+...+.+++.|..-..+|+.=-..|..-+..|..|-..|...|..|.
T Consensus        12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk   66 (78)
T 3iv1_A           12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK   66 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455567777777777778877777777777777777888888888877777776

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=84.24  E-value=1.8  Score=42.59  Aligned_cols=49  Identities=10%  Similarity=0.186  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ++++++|+++++.|+.++.+|.+++...+.....|.++...|+..|+-+
T Consensus        16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~   64 (403)
T 4etp_A           16 KEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY   64 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            3445666777777777777777777666666666777777766655443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.16  E-value=7.3  Score=35.56  Aligned_cols=40  Identities=15%  Similarity=0.070  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  310 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  310 (340)
                      +++|+.++..|+.+...+..++..++.++..++.+...++
T Consensus        34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~   73 (256)
T 3na7_A           34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN   73 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=84.01  E-value=4.7  Score=31.53  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +..|+.+++.-+.+-..++.++..+.+.+..-..|...|+..|.+|
T Consensus        29 v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL   74 (79)
T 3cvf_A           29 LRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            4455555555555555566666666666666666666666666554

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=83.79  E-value=7.5  Score=30.76  Aligned_cols=10  Identities=50%  Similarity=0.810  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 019499          291 ELQRLSEECE  300 (340)
Q Consensus       291 el~~L~~e~~  300 (340)
                      +|..|+++++
T Consensus        59 ei~~le~~i~   68 (84)
T 1gmj_A           59 EIERLQKEIE   68 (84)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*

Probab=83.51  E-value=2.4  Score=40.88  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +++..||..|...+.+...|+..+..++.+++.|+.+...|+.+|...
T Consensus        12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~   59 (323)
T 1lwu_C           12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP   59 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            355666777777777777777777777777777777777777766543

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=83.49  E-value=15  Score=30.45  Aligned_cols=47  Identities=17%  Similarity=0.297  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      .+.-|+.+++..+..-..=|.--+++..+.+.|..++..|..++..|
T Consensus        63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l  109 (110)
T 2v4h_A           63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL  109 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            56666666666666555555555556666666666666666655543

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=83.49  E-value=4.8  Score=28.48  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +||++|+.|+.-...|..++.+|-.++..   -...|+.+|..|.
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE   43 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE   43 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            57788888887777777777776555443   3455666666654

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=83.43  E-value=12  Score=29.05  Aligned_cols=52  Identities=12%  Similarity=0.144  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      |-...++.++..+..|+.+...++.++.....+++.|..=.-.|-.+|...+
T Consensus        25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR   76 (86)
T 1x8y_A           25 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR   76 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3345677788888888888888888888888888888887777877776654

>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1

Probab=83.43  E-value=3.1  Score=30.40  Aligned_cols=47  Identities=21%  Similarity=0.350  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +.+++..+..|+.+...++.++.....+++.|..-.-.|-.+|...+
T Consensus         2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR   48 (59)
T 1gk6_A            2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR   48 (59)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34567777788888888888888888888888777777777776543

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=83.20  E-value=1.6  Score=40.52  Aligned_cols=59  Identities=20%  Similarity=0.151  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          247 LKRQKRKQSNRESARRSRLRKQAECEELQA-------RVETLSNENRNLRDELQRLSEECEKLTSE  305 (340)
Q Consensus       247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~-------rv~~Le~EN~~Lr~el~~L~~e~~~L~~E  305 (340)
                      .+|.+|.++-=.==.|+|+-|...++++-.       +++.|+.||.+|+.+|+.|+.+..+.+.+
T Consensus       119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te  184 (250)
T 2ve7_C          119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV  184 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            357777655433334455555555555444       44444444444444444444444443333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=83.06  E-value=6.6  Score=31.19  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      +.+...|+.+|..+..+...|..|...|.+.+..
T Consensus        55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~   88 (93)
T 3s4r_A           55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR   88 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444433

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=82.51  E-value=0.53  Score=43.70  Aligned_cols=36  Identities=8%  Similarity=0.187  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      +.+..+.+++..+++.|++++..++.++..|+.++.
T Consensus       144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~  179 (250)
T 2ve7_C          144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD  179 (250)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444544444444444444444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=82.43  E-value=8.4  Score=32.13  Aligned_cols=47  Identities=17%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ..+-+..|..|+..+..|..++..-+.+.+....||..|+.++..+.
T Consensus        35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~   81 (120)
T 3i00_A           35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR   81 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555678888888899999999988888999999999999999874

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=82.19  E-value=1.8  Score=35.37  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRLSEEC  299 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~  299 (340)
                      .+..|..+|+.|+.||..|+++++.|.-++
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L   42 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQL   42 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555554444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.17  E-value=12  Score=36.47  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          270 ECEELQARVETLSNENRNLRDELQRL  295 (340)
Q Consensus       270 ~leeLE~rv~~Le~EN~~Lr~el~~L  295 (340)
                      +++....+++.|++||+.|+.++..+
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (487)
T 3oja_A          436 DWDMYQHKETQLAEENARLKKLNGEA  461 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence            33333333334444444333333333

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=82.10  E-value=16  Score=28.49  Aligned_cols=52  Identities=23%  Similarity=0.393  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      +-.....+|+.+...|..+...|..++..+.+.|..|......|..+|..|.
T Consensus        32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~   83 (89)
T 3bas_A           32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344456788888888888888888888888899999988888888888875

>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1

Probab=81.79  E-value=5.9  Score=27.51  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499          291 ELQRLSEECEKLTSENNSIKEDLSRLC  317 (340)
Q Consensus       291 el~~L~~e~~~L~~EN~~Lk~eL~~L~  317 (340)
                      ++..|..+++.|+.....|+.+|..|.
T Consensus        21 elaaleselqalekklaalksklqalk   47 (48)
T 1g6u_A           21 ELAALESELQALEKKLAALKSKLQALK   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455555556666666666666666554

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=81.67  E-value=8.9  Score=38.90  Aligned_cols=17  Identities=12%  Similarity=0.306  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 019499          268 QAECEELQARVETLSNE  284 (340)
Q Consensus       268 q~~leeLE~rv~~Le~E  284 (340)
                      +.++++|+.+...+..+
T Consensus        83 ~~~~~~l~~~rn~~sk~   99 (501)
T 1wle_A           83 REQIRSLEEEKEAVTEA   99 (501)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444333

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=81.45  E-value=1.2  Score=27.88  Aligned_cols=21  Identities=29%  Similarity=0.422  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 019499          280 TLSNENRNLRDELQRLSEECE  300 (340)
Q Consensus       280 ~Le~EN~~Lr~el~~L~~e~~  300 (340)
                      .|+..|..|++++..|.-++.
T Consensus         4 rlkqknarlkqeiaaleyeia   24 (28)
T 3ra3_B            4 RLKQKNARLKQEIAALEYEIA   24 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHH
Confidence            344445545444444443333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=81.34  E-value=11  Score=31.23  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +|+.++..|+.....+..++..|..+...|..+...|+.+|..+
T Consensus        80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444443

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=81.25  E-value=2.2  Score=32.95  Aligned_cols=27  Identities=26%  Similarity=0.260  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRL  295 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L  295 (340)
                      +||.+|+.+++.|+.++..|+.++...
T Consensus        50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~   76 (82)
T 1am9_A           50 DYIRFLQHSNQKLKQENLSLRTAVHKS   76 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            677777777777777777777766544

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=81.20  E-value=7  Score=31.92  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDEL  292 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el  292 (340)
                      ..+.+|+.+|+.|+.||..|+.+.
T Consensus        65 ~~v~eLe~everL~~ENq~L~~e~   88 (104)
T 3s9g_A           65 ARVRELELELDRLRAENLQLLTEN   88 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555544443

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=80.80  E-value=3.7  Score=31.74  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          268 QAECEELQARVETLSNENRNLRDELQRLSEECEK  301 (340)
Q Consensus       268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~  301 (340)
                      .+||..|+.+...|..|+..|+.++..|+.++++
T Consensus        46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~   79 (80)
T 1nlw_A           46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK   79 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4677777777777777777777777776666554

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=80.68  E-value=5.5  Score=28.09  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  312 (340)
Q Consensus       277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e  312 (340)
                      ++..|+..|-+|...-..|.+-+..|+.|..+|..+
T Consensus        11 kiarlkkdnlqlerdeqnlekiianlrdeiarlene   46 (52)
T 3he5_B           11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE   46 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence            344444555555444445554455555554444443

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=80.67  E-value=2.4  Score=28.27  Aligned_cols=27  Identities=11%  Similarity=0.239  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          282 SNENRNLRDELQRLSEECEKLTSENNS  308 (340)
Q Consensus       282 e~EN~~Lr~el~~L~~e~~~L~~EN~~  308 (340)
                      +.+|...++.|+.|++++..|+.+...
T Consensus         6 RrKn~a~qqDIddlkrQN~~Le~Qir~   32 (34)
T 1a93_B            6 RRKNDTHQQDIDDLKRQNALLEQQVRA   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence            334444444455555555555544443

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=80.63  E-value=4.7  Score=33.30  Aligned_cols=70  Identities=24%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH
Q 019499          248 KRQKRKQSNRESARRSRLRKQAECEELQARVE-------------TLSN---ENRNLRDELQRLSEE---CEKLTSENNS  308 (340)
Q Consensus       248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~-------------~Le~---EN~~Lr~el~~L~~e---~~~L~~EN~~  308 (340)
                      |+..|+...-.+-|+.|.+=...+.+|..-|-             .|..   -...|+.++..|+++   ...|+.+|..
T Consensus        23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~  102 (118)
T 4ati_A           23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRH  102 (118)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555556677777776777777765333             3322   123455555555543   4567788888


Q ss_pred             HHHHHHHhc
Q 019499          309 IKEDLSRLC  317 (340)
Q Consensus       309 Lk~eL~~L~  317 (340)
                      |..+|..|.
T Consensus       103 L~~riqeLE  111 (118)
T 4ati_A          103 LLLRVQELE  111 (118)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            888877765

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=80.60  E-value=6.7  Score=39.77  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          264 RLRKQAECEELQARVETLSNENRN----------LRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       264 R~RKq~~leeLE~rv~~Le~EN~~----------Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      |+.-+.++++|+.+...+..+...          |..++..|++++..|+.+...|.++|..
T Consensus        42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~  103 (485)
T 3qne_A           42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS  103 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555544433          4444444444444444444444444443

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=80.43  E-value=22  Score=28.99  Aligned_cols=66  Identities=18%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          251 KRKQSNRESARRSRLRKQAECEEL---QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       251 rRk~~NRESARRSR~RKq~~leeL---E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      +|..+|+.|-+.--.+=.+....|   ..|+...+.+..+=.+|+.++..+.+.|.+.|-.|..++..|
T Consensus        34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~  102 (114)
T 2xzr_A           34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARI  102 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            455666666553322222222222   233344444444444445555555555555555444444433

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=80.06  E-value=8.4  Score=38.45  Aligned_cols=28  Identities=14%  Similarity=0.260  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          288 LRDELQRLSEECEKLTSENNSIKEDLSR  315 (340)
Q Consensus       288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~  315 (340)
                      |..++..|++++..|+.+...|.++|..
T Consensus        74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (455)
T 2dq0_A           74 LLAKSREIVKRIGELENEVEELKKKIDY  101 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	6e-05
d1n69a_	78	a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [Tax	0.002

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 18/85 (21%)

Query: 248 KRQKRKQSN-RESARRSRLRKQAECEELQARVETLSNENR---------------NLRDE 291
              KR+  N  E  RR+ L++      L+ ++  L N  +               +++ E
Sbjct: 3   MNVKRRTHNVLERQRRNELKRS--FFALRDQIPELENNEKAPKVVILKKATAYILSVQAE 60

Query: 292 LQRLSEECEKLTSENNSIKEDLSRL 316
            Q+L  E + L      +K  L +L
Sbjct: 61  EQKLISEEDLLRKRREQLKHKLEQL 85

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 271 CEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 329
           C ++   ++T    N      L + + EEC++L      I ++        A+  +    
Sbjct: 7   CIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMQ 66

Query: 330 PTQSC 334
           P + C
Sbjct: 67  PKEIC 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	95.75
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	94.0
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	92.05
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	87.75
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	83.26
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	83.24
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	80.59
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	80.48

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.75  E-value=0.002  Score=48.16  Aligned_cols=30  Identities=20%  Similarity=0.478  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019499          245 RELKRQKRKQSNRESARRSRLRKQAECEEL  274 (340)
Q Consensus       245 ~e~KR~rRk~~NRESARRSR~RKq~~leeL  274 (340)
                      .-++-.||+=+||.||++||+||.+..++|
T Consensus        45 ~lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          45 QLIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            445678899999999999999999876543

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.41  Score=35.39  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      -...|+.++..|..+.+.|+.++..|+.+|..|.|.
T Consensus        53 yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc   88 (88)
T d1nkpa_          53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC   88 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455677888888888888999999999999988763

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.75  Score=33.48  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499          285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  319 (340)
Q Consensus       285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~  319 (340)
                      ...|..++..|..+.+.|+.+|..|..+|..|.|.
T Consensus        49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc   83 (83)
T d1nkpb_          49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGGC   83 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34567777788888888899999999999888763

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.49  Score=34.91  Aligned_cols=29  Identities=21%  Similarity=0.267  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          280 TLSNENRNLRDELQRLSEECEKLTSENNS  308 (340)
Q Consensus       280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~  308 (340)
                      .|+.++..|..++..|+.+++.|..+...
T Consensus        56 ~L~~~~~~l~~~~~~l~~~~~~L~~~l~~   84 (88)
T d1nkpa_          56 SVQAEEQKLISEEDLLRKRREQLKHKLEQ   84 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444444444333

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=83.26  E-value=3.3  Score=31.19  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499          286 RNLRDELQRLSEECEKLTSENNSIKEDLSRL  316 (340)
Q Consensus       286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L  316 (340)
                      ..|..++..|+.++..|+.+...+..+|..+
T Consensus        67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~   97 (110)
T d1seta1          67 EALIARGKALGEEAKRLEEALREKEARLEAL   97 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555555554443

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.24  E-value=5.4  Score=28.28  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          285 NRNLRDELQRLSEECEKLTSENNSIKEDLS  314 (340)
Q Consensus       285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~  314 (340)
                      ...|+.++..|..+++.|..++..|+.+|.
T Consensus        49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~   78 (79)
T d1nlwa_          49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344566666666667777777777777665

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=80.59  E-value=4.9  Score=30.16  Aligned_cols=34  Identities=21%  Similarity=0.207  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCC
Q 019499          295 LSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP  330 (340)
Q Consensus       295 L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~  330 (340)
                      |.++...|..+...|..++..+.  ..+..+...+|
T Consensus        69 l~~~~k~lk~~i~~le~~~~~~~--~~l~~~ll~iP  102 (110)
T d1seta1          69 LIARGKALGEEAKRLEEALREKE--ARLEALLLQVP  102 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCC
Confidence            33344444444444444444443  33333333333

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.48  E-value=1.1  Score=32.14  Aligned_cols=31  Identities=13%  Similarity=0.170  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499          269 AECEELQARVETLSNENRNLRDELQRLSEEC  299 (340)
Q Consensus       269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~  299 (340)
                      +||..|+.++..|..+...|+.++..|+.++
T Consensus        47 ~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l   77 (79)
T d1nlwa_          47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQL   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666665555555555555555554443