Citrus Sinensis ID: 019502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIKFE
ccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccEEEEEEEc
ccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccEEEEEEEEc
mgeegmtsdvqqkaaktspkltvlPLIALIFYEvsggpfgvedsvkagggpllSLLGFLIFPLIWSIPEALITAELatsfpenggYVIWISsafgpfwgfqEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPfvvmgilsiprikprrwlvvdfkkvdwrgyFNSMFWNLNYWDKASTlagevenpsktfpKALLGAVVLVVSSYLIPllagtggltslssewsdgyFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLgmsemgmlpAIFASRCLYNGLLVTLRIKFE
mgeegmtsdvqqkaaktspkltvLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIlsiprikprrwlVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIKFE
MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAgggpllsllgflifpliWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKallgavvlvvssylIPllagtggltslssEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIKFE
********************LTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIK**
************************PLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIKFE
*****************SPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIKFE
*******************KLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIKFE
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIKFE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
Q9LH39 479 Probable polyamine transp yes no 0.958 0.680 0.792 1e-143
Q9FFL1 490 Polyamine transporter RMV no no 0.947 0.657 0.634 1e-117
Q9C6S5 495 Probable polyamine transp no no 0.926 0.636 0.632 1e-114
Q6Z8D0 531 Polyamine transporter PUT yes no 0.961 0.615 0.589 1e-112
A2X8M8 531 Polyamine transporter PUT N/A no 0.961 0.615 0.589 1e-112
Q9C6S4 482 Probable polyamine transp no no 0.932 0.657 0.594 1e-102
Q9LHN7 478 Probable polyamine transp no no 0.932 0.663 0.526 1e-87
P37034 464 Uncharacterized transport yes no 0.788 0.577 0.269 8e-09
P60066 445 Arginine/agmatine antipor yes no 0.741 0.566 0.229 5e-07
P60065 445 Arginine/agmatine antipor N/A no 0.741 0.566 0.229 5e-07
>sp|Q9LH39|PHSD_ARATH Probable polyamine transporter At3g19553 OS=Arabidopsis thaliana GN=At3g19553 PE=3 SV=1 Back     alignment and function desciption
 Score =  506 bits (1304), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 259/327 (79%), Positives = 290/327 (88%), Gaps = 1/327 (0%)

Query: 3   EEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFP 62
           EE + +D      K SPKLT+LPL+ LIFYEVSGGPFGVEDSVK+GGGPLL+LLGFLIFP
Sbjct: 4   EETIVNDENSSKPKPSPKLTLLPLVFLIFYEVSGGPFGVEDSVKSGGGPLLALLGFLIFP 63

Query: 63  LIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFL 122
           LIWSIPEAL+TAELATSFPENGGYV+WISSAFGPFWGFQEGFWKW SGV+DNALYPVLFL
Sbjct: 64  LIWSIPEALVTAELATSFPENGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFL 123

Query: 123 DYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILS 182
           DYLKHS P+ + + AR+PALL IT +LTYLNYRGLHIVGFSAV L VFSLCPFVVM +L+
Sbjct: 124 DYLKHSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPFVVMALLA 183

Query: 183 IPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242
           +P I+P+RWL VD +K++WRGYFN+MFWNLNYWDKASTLAGEV+ P KTFPKAL GAV+L
Sbjct: 184 VPNIRPKRWLFVDTQKINWRGYFNTMFWNLNYWDKASTLAGEVDRPGKTFPKALFGAVLL 243

Query: 243 VVSSYLIPLLAGTGGLTSLSS-EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAE 301
           V+ SYLIPL+AGTG L+S +S EWSDGYFAEVGMLIGG WLK WIQAA+AMSNLGLFEAE
Sbjct: 244 VMGSYLIPLMAGTGALSSSTSGEWSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAE 303

Query: 302 MSGDAFQLLGMSEMGMLPAIFASRCLY 328
           MS DAFQLLGMSE+GMLPA FA R  Y
Sbjct: 304 MSSDAFQLLGMSEIGMLPAFFAQRSKY 330
Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFL1|RMV1_ARATH Polyamine transporter RMV1 OS=Arabidopsis thaliana GN=RMV1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C6S5|PHSB_ARATH Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z8D0|PUT1_ORYSJ Polyamine transporter PUT1 OS=Oryza sativa subsp. japonica GN=PUT1 PE=1 SV=1 Back     alignment and function description
>sp|A2X8M8|PUT1_ORYSI Polyamine transporter PUT1 OS=Oryza sativa subsp. indica GN=PUT1 PE=3 SV=1 Back     alignment and function description
>sp|Q9C6S4|PHSA_ARATH Probable polyamine transporter At1g31820 OS=Arabidopsis thaliana GN=At1g31820 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHN7|PHSC_ARATH Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1 Back     alignment and function description
>sp|P37034|Y1691_LEGPH Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2 Back     alignment and function description
>sp|P60066|ADIC_SALTY Arginine/agmatine antiporter OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=adiC PE=1 SV=1 Back     alignment and function description
>sp|P60065|ADIC_SALTI Arginine/agmatine antiporter OS=Salmonella typhi GN=adiC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
225428955 504 PREDICTED: uncharacterized transporter l 0.964 0.650 0.878 1e-157
255573129 493 amino acid transporter, putative [Ricinu 0.961 0.663 0.875 1e-156
296083070 506 unnamed protein product [Vitis vinifera] 0.961 0.646 0.868 1e-155
224105695 457 neutral amino acid transport protein [Po 0.955 0.711 0.887 1e-155
224060729 461 neutral amino acid transport protein [Po 0.961 0.709 0.884 1e-153
224084370429 neutral amino acid transport protein [Po 0.908 0.720 0.902 1e-150
449438333 486 PREDICTED: probable polyamine transporte 0.941 0.658 0.815 1e-144
297834866 479 amino acid permease family protein [Arab 0.964 0.684 0.803 1e-141
15230886 479 Amino acid permease family protein [Arab 0.958 0.680 0.792 1e-141
148908969 502 unknown [Picea sitchensis] 0.944 0.639 0.754 1e-140
>gi|225428955|ref|XP_002263556.1| PREDICTED: uncharacterized transporter lpg1691 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/328 (87%), Positives = 308/328 (93%)

Query: 1   MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLI 60
           MGEEG+ SDV+   +KT+PKLT+LPLIALIFYEVSGGPFGVEDSV AGGGPLLSLLGFLI
Sbjct: 1   MGEEGIASDVKNTGSKTNPKLTLLPLIALIFYEVSGGPFGVEDSVSAGGGPLLSLLGFLI 60

Query: 61  FPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVL 120
           FPL+WSIPEAL+TAELATSFPENGGYVIWIS+AFGPFWGFQEGFWKW SGV+DNALYPVL
Sbjct: 61  FPLLWSIPEALVTAELATSFPENGGYVIWISAAFGPFWGFQEGFWKWFSGVMDNALYPVL 120

Query: 121 FLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGI 180
           FLDYLKHS PIFN L ARIPALLGIT +LTYLNYRGLHIVGFSAVSL VFSLCPF+VM I
Sbjct: 121 FLDYLKHSFPIFNGLAARIPALLGITFSLTYLNYRGLHIVGFSAVSLAVFSLCPFIVMSI 180

Query: 181 LSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240
           LSIPRI+P +WLVVDFKKV+WRGYFNSMFWNLNYWDKASTLAGEVE+PS+TFPKALLGAV
Sbjct: 181 LSIPRIRPGQWLVVDFKKVNWRGYFNSMFWNLNYWDKASTLAGEVEDPSRTFPKALLGAV 240

Query: 241 VLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEA 300
           VLVVSSY+IPLLAGTG L S SSEW DGYFAEVGMLIGGFWLKWWIQAA+AMSN+GLFEA
Sbjct: 241 VLVVSSYIIPLLAGTGALRSASSEWRDGYFAEVGMLIGGFWLKWWIQAAAAMSNMGLFEA 300

Query: 301 EMSGDAFQLLGMSEMGMLPAIFASRCLY 328
           EMS DAFQLLGMSE+GMLPAIFASR  Y
Sbjct: 301 EMSSDAFQLLGMSEIGMLPAIFASRSKY 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573129|ref|XP_002527494.1| amino acid transporter, putative [Ricinus communis] gi|223533134|gb|EEF34892.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296083070|emb|CBI22474.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105695|ref|XP_002313902.1| neutral amino acid transport protein [Populus trichocarpa] gi|222850310|gb|EEE87857.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224060729|ref|XP_002300260.1| neutral amino acid transport protein [Populus trichocarpa] gi|222847518|gb|EEE85065.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224084370|ref|XP_002335345.1| neutral amino acid transport protein [Populus trichocarpa] gi|222832591|gb|EEE71068.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438333|ref|XP_004136943.1| PREDICTED: probable polyamine transporter At3g19553-like [Cucumis sativus] gi|449520126|ref|XP_004167085.1| PREDICTED: probable polyamine transporter At3g19553-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834866|ref|XP_002885315.1| amino acid permease family protein [Arabidopsis lyrata subsp. lyrata] gi|297331155|gb|EFH61574.1| amino acid permease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15230886|ref|NP_188589.1| Amino acid permease family protein [Arabidopsis thaliana] gi|75311166|sp|Q9LH39.1|PHSD_ARATH RecName: Full=Probable polyamine transporter At3g19553 gi|9294126|dbj|BAB01977.1| unnamed protein product [Arabidopsis thaliana] gi|332642736|gb|AEE76257.1| Amino acid permease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|148908969|gb|ABR17588.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
TAIR|locus:2101520 479 PUT5 "POLYAMINE UPTAKE TRANSPO 0.964 0.684 0.687 6.5e-122
TAIR|locus:2166354 490 RMV1 "resistant to methyl viol 0.944 0.655 0.571 1.2e-97
TAIR|locus:2034451 495 PUT2 "POLYAMINE UPTAKE TRANSPO 0.926 0.636 0.556 6.8e-95
UNIPROTKB|Q6Z8D0 531 PUT1 "Polyamine transporter PU 0.902 0.578 0.548 7.8e-94
TAIR|locus:2034461 482 PUT1 "POLYAMINE UPTAKE TRANSPO 0.955 0.674 0.515 4.1e-88
TAIR|locus:2086794 478 PUT4 "POLYAMINE UPTAKE TRANSPO 0.932 0.663 0.451 2.6e-70
DICTYBASE|DDB_G0267504 488 DDB_G0267504 "putative amino a 0.891 0.620 0.256 4e-24
TIGR_CMR|CBU_2020 476 CBU_2020 "amino acid antiporte 0.75 0.535 0.248 2.7e-14
TIGR_CMR|CBU_0953441 CBU_0953 "amino acid permease 0.476 0.367 0.293 3.3e-05
TIGR_CMR|BA_2281 475 BA_2281 "arginine/ornithine an 0.491 0.351 0.271 4.8e-05
TAIR|locus:2101520 PUT5 "POLYAMINE UPTAKE TRANSPORTER 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
 Identities = 227/330 (68%), Positives = 252/330 (76%)

Query:     1 MGEEG-MTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAXXXXXXXXXXXX 59
             MGEE  + +D      K SPKLT+LPL+ LIFYEVSGGPFGVEDSVK+            
Sbjct:     1 MGEEETIVNDENSSKPKPSPKLTLLPLVFLIFYEVSGGPFGVEDSVKSGGGPLLALLGFL 60

Query:    60 XXXXXWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPV 119
                  WSIPEAL+TAELATSFPENGGYV+WISSAFGPFWGFQEGFWKW SGV+DNALYPV
Sbjct:    61 IFPLIWSIPEALVTAELATSFPENGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPV 120

Query:   120 LFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179
             LFLDYLKHS P+ + + AR+PALL IT +LTYLNYRGLHIVGFSAV L VFSLCPFVVM 
Sbjct:   121 LFLDYLKHSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPFVVMA 180

Query:   180 ILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKXXXXX 239
             +L++P I+P+RWL VD +K++WRGYFN+MFWNLNYWDKASTLAGEV+ P KTFPK     
Sbjct:   181 LLAVPNIRPKRWLFVDTQKINWRGYFNTMFWNLNYWDKASTLAGEVDRPGKTFPKALFGA 240

Query:   240 XXXXXXXXXIPXXXXXXXXXXXXX-EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLF 298
                      IP              EWSDGYFAEVGMLIGG WLK WIQAA+AMSNLGLF
Sbjct:   241 VLLVMGSYLIPLMAGTGALSSSTSGEWSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLF 300

Query:   299 EAEMSGDAFQLLGMSEMGMLPAIFASRCLY 328
             EAEMS DAFQLLGMSE+GMLPA FA R  Y
Sbjct:   301 EAEMSSDAFQLLGMSEIGMLPAFFAQRSKY 330
GO:0005886 "plasma membrane" evidence=ISM
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
GO:0015203 "polyamine transmembrane transporter activity" evidence=IGI;IDA
GO:0015846 "polyamine transport" evidence=IDA
TAIR|locus:2166354 RMV1 "resistant to methyl viologen 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034451 PUT2 "POLYAMINE UPTAKE TRANSPORTER 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z8D0 PUT1 "Polyamine transporter PUT1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2034461 PUT1 "POLYAMINE UPTAKE TRANSPORTER 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086794 PUT4 "POLYAMINE UPTAKE TRANSPORTER 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267504 DDB_G0267504 "putative amino acid permease" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_2020 CBU_2020 "amino acid antiporter" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0953 CBU_0953 "amino acid permease family protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2281 BA_2281 "arginine/ornithine antiporter" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LH39PHSD_ARATHNo assigned EC number0.79200.95880.6805yesno
Q6Z8D0PUT1_ORYSJNo assigned EC number0.58980.96170.6158yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
COG0531 466 COG0531, PotE, Amino acid transporters [Amino acid 2e-20
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 1e-16
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 2e-14
PRK11357 445 PRK11357, frlA, putative fructoselysine transporte 4e-14
TIGR00905 473 TIGR00905, 2A0302, transporter, basic amino acid/p 1e-13
PRK10644 445 PRK10644, PRK10644, arginine:agmatin antiporter; P 3e-13
TIGR00910 507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 4e-08
TIGR03813 474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 7e-07
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 2e-06
TIGR03810 468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 1e-05
pfam00324 473 pfam00324, AA_permease, Amino acid permease 3e-05
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 91.4 bits (227), Expect = 2e-20
 Identities = 70/289 (24%), Positives = 115/289 (39%), Gaps = 17/289 (5%)

Query: 47  AGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWK 106
           A    L  L+  +I   +     AL  AEL+++ P  GG   +   A GP  GF  G+  
Sbjct: 44  APAAILAWLIAGIIILFL-----ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLY 98

Query: 107 WLSGVLDNALYPVLFLDYLKHSLPIFNLLIAR----IPALLGITGALTYLNYRGLHIVGF 162
            L+ V+  A   +    YL +  P   LL       I   L +   LT LN RG+     
Sbjct: 99  LLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAK 158

Query: 163 SAVSLLVFSLCPFVVMGILSIPRIKPRRW-LVVDFKKVDW-----RGYFNSMFWNLNYWD 216
               + +  +   ++  IL +         L   F                 F+    ++
Sbjct: 159 INSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFE 218

Query: 217 KASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGL--TSLSSEWSDGYFAEVG 274
             +TLA EV+NP +T P+A++ ++++V+  Y++  L   G L    L++       A   
Sbjct: 219 AIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAA 278

Query: 275 MLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFA 323
           +  GG W    I   + +S  G   A +   +  L  M+  G+LP  FA
Sbjct: 279 LFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFA 327

Length = 466
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
PRK11387 471 S-methylmethionine transporter; Provisional 100.0
PRK10655 438 potE putrescine transporter; Provisional 100.0
PRK10644 445 arginine:agmatin antiporter; Provisional 100.0
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 100.0
PRK15049 499 L-asparagine permease; Provisional 100.0
PRK10249 458 phenylalanine transporter; Provisional 100.0
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR00906 557 2A0303 cationic amino acid transport permease. 100.0
PRK10238 456 aromatic amino acid transporter; Provisional 100.0
PRK11357 445 frlA putative fructoselysine transporter; Provisio 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10746 461 putative transport protein YifK; Provisional 100.0
PRK10836 489 lysine transporter; Provisional 100.0
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10580 457 proY putative proline-specific permease; Provision 100.0
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 100.0
KOG1287 479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00911 501 2A0308 L-type amino acid transporter. 100.0
TIGR00913 478 2A0310 amino acid permease (yeast). 100.0
PRK10197 446 gamma-aminobutyrate transporter; Provisional 100.0
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00907 482 2A0304 amino acid permease (GABA permease). 100.0
COG0833 541 LysP Amino acid transporters [Amino acid transport 100.0
COG0531 466 PotE Amino acid transporters [Amino acid transport 100.0
KOG1286 554 consensus Amino acid transporters [Amino acid tran 100.0
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
KOG1289 550 consensus Amino acid transporters [Amino acid tran 100.0
PRK15238 496 inner membrane transporter YjeM; Provisional 100.0
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.94
PHA02764 399 hypothetical protein; Provisional 99.86
TIGR00814397 stp serine transporter. The HAAAP family includes 99.83
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.81
PF03845320 Spore_permease: Spore germination protein; InterPr 99.81
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.8
PRK10483414 tryptophan permease; Provisional 99.79
PRK09664415 tryptophan permease TnaB; Provisional 99.77
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.76
PRK15132403 tyrosine transporter TyrP; Provisional 99.75
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.72
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.68
PRK13629443 threonine/serine transporter TdcC; Provisional 99.64
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.57
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.46
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.44
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.42
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.42
PLN03074473 auxin influx permease; Provisional 99.24
COG3949349 Uncharacterized membrane protein [Function unknown 99.21
PTZ00206467 amino acid transporter; Provisional 99.11
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.09
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.76
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.76
PRK09442 483 panF sodium/panthothenate symporter; Provisional 98.73
PRK11375 484 allantoin permease; Provisional 98.67
TIGR00813407 sss transporter, SSS family. have different number 98.64
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.6
PRK15433 439 branched-chain amino acid transport system 2 carri 98.55
PRK11017404 codB cytosine permease; Provisional 98.44
PRK12488 549 acetate permease; Provisional 98.41
COG1457 442 CodB Purine-cytosine permease and related proteins 98.39
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 98.38
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 98.38
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.38
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 98.35
PRK10484 523 putative transporter; Provisional 98.32
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.31
PRK15419 502 proline:sodium symporter PutP; Provisional 98.29
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.28
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.25
PRK09395 551 actP acetate permease; Provisional 98.25
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.17
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 98.12
KOG1305411 consensus Amino acid transporter protein [Amino ac 98.04
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.9
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.86
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.82
PRK00701439 manganese transport protein MntH; Reviewed 97.29
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 96.74
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 96.51
COG4147 529 DhlC Predicted symporter [General function predict 96.38
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.32
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 96.18
PLN00149 779 potassium transporter; Provisional 96.18
PLN00150 779 potassium ion transporter family protein; Provisio 96.16
PF02705 534 K_trans: K+ potassium transporter; InterPro: IPR00 95.93
PLN00148 785 potassium transporter; Provisional 95.82
PLN00151 852 potassium transporter; Provisional 95.17
PRK10745 622 trkD potassium transport protein Kup; Provisional 94.82
PRK09950506 putative transporter; Provisional 94.09
PRK09928 679 choline transport protein BetT; Provisional 93.89
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 93.51
KOG4303524 consensus Vesicular inhibitory amino acid transpor 92.7
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 92.34
KOG3660 629 consensus Sodium-neurotransmitter symporter [Signa 91.36
KOG2466 572 consensus Uridine permease/thiamine transporter/al 90.45
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 90.28
TIGR00842453 bcct choline/carnitine/betaine transport. properti 89.18
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 88.42
COG1292537 BetT Choline-glycine betaine transporter [Cell env 88.09
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 87.0
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 85.7
COG1966 575 CstA Carbon starvation protein, predicted membrane 81.89
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 81.76
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-48  Score=369.55  Aligned_cols=324  Identities=18%  Similarity=0.163  Sum_probs=269.7

Q ss_pred             ccccccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhh
Q 019502           10 VQQKAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVI   88 (340)
Q Consensus        10 ~~~~~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~   88 (340)
                      ++|++++++|+++.+++++++++.++| |+|..++.....+||...+++|++++++ .++.+++++|+++++|++||.|.
T Consensus         5 ~~~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~-~~~~~~~~aELas~~P~aGG~y~   83 (471)
T PRK11387          5 TSQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALV-VYLVMQCLGELSVAMPETGAFHV   83 (471)
T ss_pred             CCCcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHH
Confidence            344445689999999999999999999 9998888775557875558899999985 99999999999999999999999


Q ss_pred             hHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHH
Q 019502           89 WISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL  168 (340)
Q Consensus        89 ~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  168 (340)
                      |++|.+||..||.+||.+|+.|....+........+++.++|.    .+.+...+++.++.+.+|++|+|..++++.+..
T Consensus        84 y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~  159 (471)
T PRK11387         84 YAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----VPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFS  159 (471)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999999988877777666666666652    233444455667788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccc------cCC-------CccccccCccc---hHHHHHHHHHhhhhHHhhhhhhhhccCCCCcH
Q 019502          169 VFSLCPFVVMGILSIPRI------KPR-------RWLVVDFKKVD---WRGYFNSMFWNLNYWDKASTLAGEVENPSKTF  232 (340)
Q Consensus       169 ~~~~~~l~~~~i~~~~~~------~~~-------~~~~~~~~~~~---~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~  232 (340)
                      .++++.++.+++.++...      +..       ++.+.++.+.+   +...+..++|+|.|+|.+++++||+|||+|++
T Consensus       160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i  239 (471)
T PRK11387        160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI  239 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence            888887776666554211      111       11111111222   22333457899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 019502          233 PKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM  312 (340)
Q Consensus       233 p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~  312 (340)
                      ||+++.+..+..++|++..++.....|.++...+++|..+.+++.++++...++.+..+++.+++.++.+.+.||++++|
T Consensus       240 PrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~  319 (471)
T PRK11387        240 PVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSL  319 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999998888988877667899999999888999999999999999999999999999999999


Q ss_pred             hhcCCchHHHhhccCCCCcceeeeEe
Q 019502          313 SEMGMLPAIFASRCLYNGLLVTLRIK  338 (340)
Q Consensus       313 a~d~~lP~~~~~~~~~~~P~~a~~~~  338 (340)
                      ||||.+|++|+|+||+++|++|++++
T Consensus       320 ardg~lP~~f~~~~~~~~P~~Ail~~  345 (471)
T PRK11387        320 SNEGTLPACFARLTKRGIPLTALSVS  345 (471)
T ss_pred             HhcCCcCHHHHHhCCCCCcHHHHHHH
Confidence            99999999999999999999998654

>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
3ncy_A 445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 2e-04
3lrb_A 445 Structure Of E. Coli Adic Length = 445 4e-04
3l1l_A 445 Structure Of Arg-Bound Escherichia Coli Adic Length 9e-04
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure 
Iteration: 1

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 70  ALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL 129
           +++ A++++  P  GG   +    FGPF G+Q     WL+  + N    V+ + YL +  
Sbjct: 57  SMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF 116
Query: 130 PIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL-----VFSLCPFVVMGILSIP 184
           PI      + P +L +T       +  L+IVG   ++ +     V +L P V + +    
Sbjct: 117 PIL-----KDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWF 171
Query: 185 RIKPRRWLVV-DFKKVDWRGYFNSMFWNLNYW-----DKASTLAGEVENPSKTFP 233
             K   ++   +   ++  G   S   N+  W     + AS  AG V+NP +  P
Sbjct: 172 WFKGETYMAAWNVSGMNTFGAIQSTL-NVTLWSFIGVESASVAAGVVKNPKRNVP 225
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 3e-41
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 7e-26
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 3e-16
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
 Score =  149 bits (378), Expect = 3e-41
 Identities = 71/337 (21%), Positives = 123/337 (36%), Gaps = 26/337 (7%)

Query: 6   MTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIW 65
           M + VQ   AK   +LT+L   A+           V +           +   L+  ++W
Sbjct: 1   MATSVQTGKAK---QLTLLGFFAITA----SMVMAVYEYPTFATSGFSLVFFLLLGGILW 53

Query: 66  SIPEALITAELATSFP-ENGGYVIWISSAFGPFWGFQEGFWKWLS---GVLDNALYPVLF 121
            IP  L  AE+AT    E GG   W+S+  GP WGF    + +L    G +    + +  
Sbjct: 54  FIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGA 113

Query: 122 LDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVG-FSAVSLLVFSLCPFVVMGI 180
           L Y+     +    I +  A L I  AL    + G       + V      L P  ++  
Sbjct: 114 LSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIA 173

Query: 181 LSIPRIKPRRWLVV---------DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKT 231
           L+   +     + +         DF KV     F +   +    + ++T   E+ NP + 
Sbjct: 174 LAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRD 233

Query: 232 FPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGF-----WLKWWI 286
           +P A+L  +V  +    +  L+    +       S G      +L+        W    I
Sbjct: 234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVI 293

Query: 287 QAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFA 323
            A   +  L    + + G +  +   ++  +LPA FA
Sbjct: 294 SALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFA 330
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 99.05
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.28
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.06
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.78
4ain_A539 Glycine betaine transporter BETP; membrane protein 93.59
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 88.85
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=8.1e-48  Score=363.78  Aligned_cols=321  Identities=19%  Similarity=0.274  Sum_probs=283.5

Q ss_pred             cccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh
Q 019502           15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA   93 (340)
Q Consensus        15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~   93 (340)
                      ++++|++++++++++.+++++| |+|..|..+.. +|+. .+++|++++++ .++.+++++|+++++|++||.|+|++|.
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~-~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~   80 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLAS-TGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRC   80 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHH-HCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHH-hhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence            3568999999999999999999 89988887766 6776 47889998885 8999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502           94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC  173 (340)
Q Consensus        94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  173 (340)
                      +||+.|+..+|.+++++....+......+++++.++|..+.+++..+++++++++.+++|++|+|..+|++.+...++++
T Consensus        81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~  160 (445)
T 3l1l_A           81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI  160 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988886655677888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccCCCccccccC-----ccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHH
Q 019502          174 PFVVMGILSIPRIKPRRWLVVDFK-----KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL  248 (340)
Q Consensus       174 ~l~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~  248 (340)
                      .++++++.++.+.+++++.+...+     ..++...+...+|+|.|+|...+++||+|||+|++||+++.+..+.+++|+
T Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~  240 (445)
T 3l1l_A          161 PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV  240 (445)
T ss_dssp             HHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence            888888888776665554322111     122334456788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCC
Q 019502          249 IPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLY  328 (340)
Q Consensus       249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~  328 (340)
                      +..++.....|+++..+++.|+.+..++..+++...++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+||+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~  320 (445)
T 3l1l_A          241 LSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA  320 (445)
T ss_dssp             HHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTT
T ss_pred             HHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCC
Confidence            99999999999988877888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeeEe
Q 019502          329 NGLLVTLRIK  338 (340)
Q Consensus       329 ~~P~~a~~~~  338 (340)
                      ++|+++++++
T Consensus       321 ~~P~~a~~~~  330 (445)
T 3l1l_A          321 GTPVAGLIIV  330 (445)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999998654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 96.29
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.29  E-value=0.36  Score=43.26  Aligned_cols=219  Identities=16%  Similarity=0.070  Sum_probs=102.9

Q ss_pred             cchhHHHHhhhhhcc-c-ccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchhhhHHhhh-Cch
Q 019502           22 TVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-GGYVIWISSAF-GPF   97 (340)
Q Consensus        22 ~~~~~~~l~~~~~~g-g-i~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~-Gg~y~~~~~~~-G~~   97 (340)
                      +..+.+.-+++..+| | +-=.|.-....+|. +.++.+++..++..+|....-.-+++...++ -+......... +.+
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGg-aFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~   84 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGG-AFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR   84 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCc
Confidence            556777778888888 6 33445555563444 4567777766555555544333334443222 12333332222 222


Q ss_pred             hHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHhchhh--------------------------------hhhhhH
Q 019502           98 WGFQEGFW-------KWLSGVLDNALYPVLFLDYLKHSLPIF--------------------------------NLLIAR  138 (340)
Q Consensus        98 ~g~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~  138 (340)
                      .....|+.       ...+|....+.............+|..                                ++....
T Consensus        85 ~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (509)
T d2a65a1          85 FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFA  164 (509)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcccccCccccccchHHHHHhhhccccCCCccccchHHH
Confidence            22222332       222233333332222222222222210                                000112


Q ss_pred             HHHHHHHHHHHHHHHHhcc-hhHHHHhHHHHHHHHHHHHHHHHHHhccccCC--C-------cccccc---CccchHHHH
Q 019502          139 IPALLGITGALTYLNYRGL-HIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR--R-------WLVVDF---KKVDWRGYF  205 (340)
Q Consensus       139 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~--~-------~~~~~~---~~~~~~~~~  205 (340)
                      ....++.+++...+..+|+ |...+..++.........++..+..+.....+  .       +.|...   ++.-|....
T Consensus       165 ~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l~~~~~~l~i~~~~l~~~~gga~~gl~~~~~pd~~~L~~~~vW~~A~  244 (509)
T d2a65a1         165 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAV  244 (509)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHhhhccCCCHHHhcChHHHHHHH
Confidence            2332344455555566665 34556666555544444444444333322111  0       111111   133477777


Q ss_pred             HHHHHhhh-hHHhhhhhhhhccCCCCcHHHHHHHHHHH
Q 019502          206 NSMFWNLN-YWDKASTLAGEVENPSKTFPKALLGAVVL  242 (340)
Q Consensus       206 ~~~~~af~-G~e~~~~~~~e~k~p~k~~p~a~~~~~~i  242 (340)
                      ..++|+++ |+.....++...|+. .|..|..+.....
T Consensus       245 ~Q~ffSlgiG~G~~i~~~Sy~~~~-~n~~rda~~v~~~  281 (509)
T d2a65a1         245 GQIFFTLSLGFGAIITYASYVRKD-QDIVLSGLTAATL  281 (509)
T ss_dssp             HHHHHHHTTTSSHHHHHHTTSCTT-SCCHHHHHHHHHH
T ss_pred             HHHhhhhcccCCceeeehhhccch-hhhcccceEEEec
Confidence            88888876 888888888888874 5566655444333