Citrus Sinensis ID: 019503

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MANENSHGSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
ccccccccccEEccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHccccccccccEEEEcccccccccccHHHHccccccHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccEEEEEEEEEEEEcccccccEEEEccccccccccccccccccEEEEcccHHHHHHHHHHHHHcc
cccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccccccccccEEHHHHcccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHccHHHHHHHHEEEEEccccccccccccccHHHHccHHHHHHHHHccccEEEEcHHHHcccEEcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcHHHcEcEEEEEEEEEccccccEEEEEccccccccccccccccccEEEEEccHHHHHHHHHHHHHcc
manenshgsgvvlgsstnpakliidtdpgiddsMTILMAfqtpeleilGLTTIfgnvttedATRNALTLCemagcpgvpvaegspeplkggkprvaefahgsdgmgnisltppkakkcdknaSEFLVDKvseypgevsilalgpltNLALAIKRDSSFASKVKNIVVLGGAFfalgnvnpaaeaniygdpeaadvvFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFyrdwhvksdgvhgnfsfksiflhdpvsfvalvrpdlftfkkGVVRVETQGICMGHTLMDqglkrwnvsnpwtgyspvsvAWTVNVDKVLNYIKRLLMKQ
manenshgsgvVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSpvsvawtvnvDKVLNYIKRLLMKQ
MANENSHGSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
********************KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGV*********************************************EFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLL***
*****************NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK*
**********VVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
****************TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANENSHGSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
Q9SJM7336 Uridine nucleosidase 1 OS yes no 0.961 0.973 0.761 1e-148
Q6ZJ05324 Probable uridine nucleosi yes no 0.917 0.962 0.754 1e-141
Q652Q8337 Probable uridine nucleosi no no 0.917 0.925 0.708 1e-131
Q8LAC4322 Probable uridine nucleosi no no 0.920 0.972 0.5 4e-84
Q9P6J4310 Uncharacterized protein C yes no 0.855 0.938 0.365 2e-49
P83851314 Inosine-uridine preferrin yes no 0.802 0.869 0.343 5e-42
B4TB65311 Pyrimidine-specific ribon yes no 0.8 0.874 0.342 3e-40
B5BCD9311 Pyrimidine-specific ribon yes no 0.8 0.874 0.342 3e-40
Q5PM78311 Pyrimidine-specific ribon yes no 0.8 0.874 0.342 3e-40
Q8Z8H0311 Pyrimidine-specific ribon N/A no 0.8 0.874 0.342 5e-40
>sp|Q9SJM7|URH1_ARATH Uridine nucleosidase 1 OS=Arabidopsis thaliana GN=URH1 PE=1 SV=2 Back     alignment and function desciption
 Score =  524 bits (1349), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/339 (76%), Positives = 293/339 (86%), Gaps = 12/339 (3%)

Query: 4   ENSHG---SGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTE 60
           EN +G   +G VLG      KLIIDTDPGIDDSM ILMAFQTPELEILGLTT+FGNV+T+
Sbjct: 6   ENCNGGISNGDVLGKHE---KLIIDTDPGIDDSMAILMAFQTPELEILGLTTVFGNVSTQ 62

Query: 61  DATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDK 120
           DATRNAL LCE+AG P VPVAEGS EPLKGG PRVA+F HG +G+G++SL PP  KK +K
Sbjct: 63  DATRNALLLCEIAGFPDVPVAEGSSEPLKGGIPRVADFVHGKNGLGDVSLPPPSRKKSEK 122

Query: 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180
           +A+EFL +KV EYPGEV+ILALGPLTNLALAIKRDSSFASKVK IV+LGGAFF+LGNVNP
Sbjct: 123 SAAEFLDEKVEEYPGEVTILALGPLTNLALAIKRDSSFASKVKKIVILGGAFFSLGNVNP 182

Query: 181 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCK 240
           AAEANIYGDPEAADVVFTSGA+I VVGINITTQ+KL+D D LEL   KG++ +L+ DMCK
Sbjct: 183 AAEANIYGDPEAADVVFTSGADITVVGINITTQLKLSDDDLLELGNCKGKHSKLISDMCK 242

Query: 241 FYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMD 300
           FYRDWHVKSDGV+G      ++LHDPVSFVA+VRPDLFT+KKGVVRVETQGIC+GHTLMD
Sbjct: 243 FYRDWHVKSDGVYG------VYLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLMD 296

Query: 301 QGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 339
           QGLKRWN SNPW GYSP+SVAWTV+V+ VL Y+K  LMK
Sbjct: 297 QGLKRWNGSNPWVGYSPISVAWTVDVEGVLEYVKAKLMK 335
Involved in pyrimidine breakdown rather than in pyrimidine salvage. Unable to use cytidine as a substrate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 3
>sp|Q6ZJ05|URH1_ORYSJ Probable uridine nucleosidase 1 OS=Oryza sativa subsp. japonica GN=URH1 PE=2 SV=1 Back     alignment and function description
>sp|Q652Q8|URH2_ORYSJ Probable uridine nucleosidase 2 OS=Oryza sativa subsp. japonica GN=URH2 PE=2 SV=1 Back     alignment and function description
>sp|Q8LAC4|URH2_ARATH Probable uridine nucleosidase 2 OS=Arabidopsis thaliana GN=URH2 PE=2 SV=1 Back     alignment and function description
>sp|Q9P6J4|YHD6_SCHPO Uncharacterized protein C1683.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.06c PE=3 SV=1 Back     alignment and function description
>sp|P83851|IUNH_LEIMA Inosine-uridine preferring nucleoside hydrolase OS=Leishmania major GN=NSNH PE=1 SV=3 Back     alignment and function description
>sp|B4TB65|RIHA_SALHS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella heidelberg (strain SL476) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|B5BCD9|RIHA_SALPK Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain AKU_12601) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|Q5PM78|RIHA_SALPA Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|Q8Z8H0|RIHA_SALTI Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhi GN=rihA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
224090661351 predicted protein [Populus trichocarpa] 0.961 0.931 0.814 1e-158
359482324342 PREDICTED: uridine nucleosidase 1-like [ 0.95 0.944 0.823 1e-156
255575629330 inosine-uridine preferring nucleoside hy 0.941 0.969 0.794 1e-152
357510999334 Inosine-uridine preferring ribonucleosid 0.920 0.937 0.799 1e-149
297827113332 inosine-uridine preferring nucleoside hy 0.961 0.984 0.764 1e-148
18404099336 Uridine nucleosidase 1 [Arabidopsis thal 0.961 0.973 0.761 1e-146
363806952330 uncharacterized protein LOC100787563 [Gl 0.967 0.996 0.746 1e-145
449451126332 PREDICTED: uridine nucleosidase 1-like [ 0.973 0.996 0.758 1e-145
195629752325 pyrimidine-specific ribonucleoside hydro 0.938 0.981 0.747 1e-141
326514768324 predicted protein [Hordeum vulgare subsp 0.917 0.962 0.764 1e-140
>gi|224090661|ref|XP_002309047.1| predicted protein [Populus trichocarpa] gi|222855023|gb|EEE92570.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 273/335 (81%), Positives = 299/335 (89%), Gaps = 8/335 (2%)

Query: 7   HGS--GVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATR 64
           HG   GV+ GS+  P KLIIDTDPGIDD+M ILMAFQ+PELE+LGLTTIFGNV+TEDATR
Sbjct: 23  HGERDGVLAGSTAKPEKLIIDTDPGIDDTMAILMAFQSPELEVLGLTTIFGNVSTEDATR 82

Query: 65  NALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASE 124
           NAL LCE+AG P VPVAEGSPEPLKGG P V +F HGSDG+GN  L+PPKAKK  K+ASE
Sbjct: 83  NALLLCEIAGRPDVPVAEGSPEPLKGGIPTVPDFIHGSDGLGNTFLSPPKAKKIGKSASE 142

Query: 125 FLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEA 184
           FL+DKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVK IVVLGGAFFALGNVNPAAEA
Sbjct: 143 FLLDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKRIVVLGGAFFALGNVNPAAEA 202

Query: 185 NIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRD 244
           NI+GDPEAAD+VFTSGANI VVGINITTQVK TD D LELRQSKG+Y ++L DMCKFYRD
Sbjct: 203 NIHGDPEAADLVFTSGANIVVVGINITTQVKFTDGDLLELRQSKGKYAKILSDMCKFYRD 262

Query: 245 WHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLK 304
           WHVKSDGV+G      IFLHDPVSFVALVRPDLFT+K GVVRVETQGIC GHTLMDQGLK
Sbjct: 263 WHVKSDGVYG------IFLHDPVSFVALVRPDLFTYKNGVVRVETQGICAGHTLMDQGLK 316

Query: 305 RWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 339
           RWN SNPW+G+SPV+VAWTV VD+VLNY+++LLMK
Sbjct: 317 RWNSSNPWSGFSPVAVAWTVTVDEVLNYVRQLLMK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482324|ref|XP_002283153.2| PREDICTED: uridine nucleosidase 1-like [Vitis vinifera] gi|297740083|emb|CBI30265.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255575629|ref|XP_002528714.1| inosine-uridine preferring nucleoside hydrolase, putative [Ricinus communis] gi|223531808|gb|EEF33626.1| inosine-uridine preferring nucleoside hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357510999|ref|XP_003625788.1| Inosine-uridine preferring ribonucleoside hydrolase [Medicago truncatula] gi|355500803|gb|AES82006.1| Inosine-uridine preferring ribonucleoside hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297827113|ref|XP_002881439.1| inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327278|gb|EFH57698.1| inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18404099|ref|NP_565843.1| Uridine nucleosidase 1 [Arabidopsis thaliana] gi|75206298|sp|Q9SJM7.2|URH1_ARATH RecName: Full=Uridine nucleosidase 1; AltName: Full=Uridine ribohydrolase 1 gi|15809830|gb|AAL06843.1| At2g36310/F2H17.8 [Arabidopsis thaliana] gi|17978871|gb|AAL47407.1| At2g36310/F2H17.8 [Arabidopsis thaliana] gi|20197937|gb|AAD21435.2| expressed protein [Arabidopsis thaliana] gi|21554564|gb|AAM63615.1| unknown [Arabidopsis thaliana] gi|330254137|gb|AEC09231.1| Uridine nucleosidase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|363806952|ref|NP_001242310.1| uncharacterized protein LOC100787563 [Glycine max] gi|255642155|gb|ACU21342.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449451126|ref|XP_004143313.1| PREDICTED: uridine nucleosidase 1-like [Cucumis sativus] gi|449482364|ref|XP_004156258.1| PREDICTED: uridine nucleosidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|195629752|gb|ACG36517.1| pyrimidine-specific ribonucleoside hydrolase rihA [Zea mays] gi|380450563|gb|AFD54993.1| nucleoside N-ribohydrolase 2b [Zea mays subsp. mays] gi|414870116|tpg|DAA48673.1| TPA: putative inosine-uridine preferring nucleoside hydrolase [Zea mays] Back     alignment and taxonomy information
>gi|326514768|dbj|BAJ99745.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326526085|dbj|BAJ93219.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
TAIR|locus:2049435336 URH1 "uridine-ribohydrolase 1" 0.961 0.973 0.761 1.4e-135
TAIR|locus:2032008322 URH2 "uridine-ribohydrolase 2" 0.920 0.972 0.5 1.3e-77
POMBASE|SPBC1683.06c310 SPBC1683.06c "uridine ribohydr 0.855 0.938 0.365 2e-47
TIGR_CMR|SPO_2470313 SPO_2470 "inosine-uridine pref 0.8 0.869 0.399 1.3e-43
UNIPROTKB|P41409311 rihA [Escherichia coli K-12 (t 0.8 0.874 0.335 8.9e-38
UNIPROTKB|P22564304 rihC [Escherichia coli K-12 (t 0.779 0.871 0.367 2.4e-37
TIGR_CMR|SO_0811318 SO_0811 "inosine-uridine prefe 0.802 0.858 0.330 6.3e-37
UNIPROTKB|P33022313 rihB "ribonucleoside hydrolase 0.8 0.869 0.312 8e-37
TIGR_CMR|BA_3606310 BA_3606 "inosine-uridine prefe 0.835 0.916 0.317 1.2e-33
TIGR_CMR|BA_5338316 BA_5338 "inosine-uridine prefe 0.797 0.857 0.315 8.5e-33
TAIR|locus:2049435 URH1 "uridine-ribohydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
 Identities = 258/339 (76%), Positives = 293/339 (86%)

Query:     4 ENSHG---SGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTE 60
             EN +G   +G VLG      KLIIDTDPGIDDSM ILMAFQTPELEILGLTT+FGNV+T+
Sbjct:     6 ENCNGGISNGDVLGKHE---KLIIDTDPGIDDSMAILMAFQTPELEILGLTTVFGNVSTQ 62

Query:    61 DATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDK 120
             DATRNAL LCE+AG P VPVAEGS EPLKGG PRVA+F HG +G+G++SL PP  KK +K
Sbjct:    63 DATRNALLLCEIAGFPDVPVAEGSSEPLKGGIPRVADFVHGKNGLGDVSLPPPSRKKSEK 122

Query:   121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180
             +A+EFL +KV EYPGEV+ILALGPLTNLALAIKRDSSFASKVK IV+LGGAFF+LGNVNP
Sbjct:   123 SAAEFLDEKVEEYPGEVTILALGPLTNLALAIKRDSSFASKVKKIVILGGAFFSLGNVNP 182

Query:   181 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCK 240
             AAEANIYGDPEAADVVFTSGA+I VVGINITTQ+KL+D D LEL   KG++ +L+ DMCK
Sbjct:   183 AAEANIYGDPEAADVVFTSGADITVVGINITTQLKLSDDDLLELGNCKGKHSKLISDMCK 242

Query:   241 FYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMD 300
             FYRDWHVKSDGV+G      ++LHDPVSFVA+VRPDLFT+KKGVVRVETQGIC+GHTLMD
Sbjct:   243 FYRDWHVKSDGVYG------VYLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLMD 296

Query:   301 QGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 339
             QGLKRWN SNPW GYSP+SVAWTV+V+ VL Y+K  LMK
Sbjct:   297 QGLKRWNGSNPWVGYSPISVAWTVDVEGVLEYVKAKLMK 335
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006218 "uridine catabolic process" evidence=IMP
GO:0045437 "uridine nucleosidase activity" evidence=IDA
GO:0047622 "adenosine nucleosidase activity" evidence=IDA
GO:0047724 "inosine nucleosidase activity" evidence=IDA
GO:0006152 "purine nucleoside catabolic process" evidence=IMP
GO:0072585 "xanthosine nucleotidase activity" evidence=IDA
TAIR|locus:2032008 URH2 "uridine-ribohydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC1683.06c SPBC1683.06c "uridine ribohydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2470 SPO_2470 "inosine-uridine preferring nucleoside hydrolase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P41409 rihA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P22564 rihC [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0811 SO_0811 "inosine-uridine preferring nucleoside hydrolase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P33022 rihB "ribonucleoside hydrolase 2 (pyrimidine-specific)" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3606 BA_3606 "inosine-uridine preferring nucleoside hydrolase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5338 BA_5338 "inosine-uridine preferring nucleoside hydrolase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9P6J4YHD6_SCHPONo assigned EC number0.36560.85580.9387yesno
P83851IUNH_LEIMA3, ., 2, ., 2, ., -0.34380.80290.8694yesno
Q652Q8URH2_ORYSJ3, ., 2, ., 2, ., 30.70840.91760.9258nono
Q6ZJ05URH1_ORYSJ3, ., 2, ., 2, ., 30.75470.91760.9629yesno
Q0HZ05RIHA_SHESR3, ., 2, ., -, ., -0.33090.80290.8584yesno
A0L0Y0RIHA_SHESA3, ., 2, ., -, ., -0.33090.80290.8584yesno
Q9SJM7URH1_ARATH3, ., 2, ., 2, ., 30.76100.96170.9732yesno
Q0HEZ4RIHA_SHESM3, ., 2, ., -, ., -0.33090.80290.8584yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.30.979
3rd Layer3.2.20.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
PLN02717316 PLN02717, PLN02717, uridine nucleosidase 0.0
cd02650304 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subg 1e-154
COG1957311 COG1957, URH1, Inosine-uridine nucleoside N-ribohy 1e-105
pfam01156304 pfam01156, IU_nuc_hydro, Inosine-uridine preferrin 1e-102
cd02651302 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIU 2e-86
cd00455295 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolas 1e-80
cd02649306 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleos 3e-62
cd02653320 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleosi 1e-61
PRK10768304 PRK10768, PRK10768, ribonucleoside hydrolase RihC; 3e-54
PRK10443311 PRK10443, rihA, ribonucleoside hydrolase 1; Provis 8e-54
PRK09955313 PRK09955, rihB, ribonucleoside hydrolase 2; Provis 5e-48
cd02648367 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleosi 5e-37
cd02654318 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH 2e-35
cd02647312 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleo 8e-27
cd02652293 cd02652, nuc_hydro_2, NH_2: A subgroup of nucleosi 3e-12
PTZ00313326 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nu 5e-09
>gnl|CDD|178319 PLN02717, PLN02717, uridine nucleosidase Back     alignment and domain information 
 Score =  588 bits (1518), Expect = 0.0
 Identities = 225/321 (70%), Positives = 259/321 (80%), Gaps = 7/321 (2%)

Query: 21  KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 80
           KLIIDTDPGIDD+M ILMA ++PE+E++GLTTIFGNVTT+ ATRNAL L EMAG P VPV
Sbjct: 2   KLIIDTDPGIDDAMAILMALRSPEVEVIGLTTIFGNVTTKLATRNALHLLEMAGRPDVPV 61

Query: 81  AEGSPEPLKGG-KPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSI 139
           AEGS EPLKGG KPR+A+F HGSDG+GN +L PPK KK +K+A+EFLV+KVSEYPGEV++
Sbjct: 62  AEGSHEPLKGGTKPRIADFVHGSDGLGNTNLPPPKGKKIEKSAAEFLVEKVSEYPGEVTV 121

Query: 140 LALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS 199
           +ALGPLTNLALAIK D SFA KV  IVVLGGAFF  GNVNPAAEANI+GDPEAAD+VFTS
Sbjct: 122 VALGPLTNLALAIKLDPSFAKKVGQIVVLGGAFFVNGNVNPAAEANIFGDPEAADIVFTS 181

Query: 200 GANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFK 259
           GA+I VVGIN+TTQV LTDAD  ELR SKG+Y Q L D+CKFYRDWH KS G+ G     
Sbjct: 182 GADITVVGINVTTQVVLTDADLEELRDSKGKYAQFLCDICKFYRDWHRKSYGIDG----- 236

Query: 260 SIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVS 319
            I+LHDP + +A VRP LFT+K+GVVRVET+GIC G TL D GLKRWN  N WTG  PV 
Sbjct: 237 -IYLHDPTALLAAVRPSLFTYKEGVVRVETEGICRGLTLFDNGLKRWNGENAWTGRPPVK 295

Query: 320 VAWTVNVDKVLNYIKRLLMKQ 340
           VA TV+   V+  +K  LM  
Sbjct: 296 VAVTVDAPAVVELVKERLMAS 316

Length = 316
>gnl|CDD|239116 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB) Back     alignment and domain information
>gnl|CDD|224868 COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|216336 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside hydrolase Back     alignment and domain information
>gnl|CDD|239117 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|238257 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|239115 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans Back     alignment and domain information
>gnl|CDD|239119 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional Back     alignment and domain information
>gnl|CDD|182465 PRK10443, rihA, ribonucleoside hydrolase 1; Provisional Back     alignment and domain information
>gnl|CDD|182166 PRK09955, rihB, ribonucleoside hydrolase 2; Provisional Back     alignment and domain information
>gnl|CDD|239114 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|239120 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH Back     alignment and domain information
>gnl|CDD|239113 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax Back     alignment and domain information
>gnl|CDD|239118 cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|140334 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nucleoside hydrolase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
COG1957311 URH1 Inosine-uridine nucleoside N-ribohydrolase [N 100.0
PLN02717316 uridine nucleosidase 100.0
PRK09955313 rihB ribonucleoside hydrolase 2; Provisional 100.0
cd02653320 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrola 100.0
cd02651302 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine 100.0
PRK10443311 rihA ribonucleoside hydrolase 1; Provisional 100.0
PRK10768304 ribonucleoside hydrolase RihC; Provisional 100.0
cd02649306 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrol 100.0
cd02650304 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nu 100.0
PTZ00313326 inosine-adenosine-guanosine-nucleoside hydrolase; 100.0
cd02654318 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolas 100.0
cd00455295 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleo 100.0
PF01156312 IU_nuc_hydro: Inosine-uridine preferring nucleosid 100.0
cd02647312 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydro 100.0
cd02648367 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrola 100.0
KOG2938350 consensus Predicted inosine-uridine preferring nuc 100.0
cd02652293 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrola 100.0
PF07632260 DUF1593: Protein of unknown function (DUF1593); In 98.29
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-84  Score=606.85  Aligned_cols=308  Identities=41%  Similarity=0.655  Sum_probs=292.7

Q ss_pred             CCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccc
Q 019503           18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE   97 (340)
Q Consensus        18 ~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~   97 (340)
                      +++|||||||+|.||++||+||+++|++||+|||+|+||++++++++|++.+|+.+|+.+||||+|+.+||.++. ..++
T Consensus         1 ~~~kiiiD~DpG~DDaiAlllal~~p~i~l~giTtv~GNv~le~t~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~-~~a~   79 (311)
T COG1957           1 MMRKIIIDCDPGHDDAIALLLALASPEIDLLGITTVAGNVPLEQTTRNALSVLELLGRADIPVYAGAARPLLREP-ITAP   79 (311)
T ss_pred             CCceEEEeCCCChhHHHHHHHHhcCCCceEEEEEEecCcccHhHHHHHHHHHHHHcCCCCCCeecCCCCCcCCCC-cchh
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999875 4668


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503           98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN  177 (340)
Q Consensus        98 ~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn  177 (340)
                      ++||++||++..+|.|...+...+|+++|+++++++|++|||+++|||||||+|++++|++.++||+||||||+++.+||
T Consensus        80 ~iHG~~Gl~~~~lp~~~~~~~~~~A~~~ii~~l~~~~g~vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~~~~GN  159 (311)
T COG1957          80 EIHGESGLGGPELPEPTRKLESKHAVDAIIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAFFVPGN  159 (311)
T ss_pred             hhcCCcCCCCCCCCcccccccCCcHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhCcchhhhhcEEEEecCccCCCCC
Confidence            99999999999888887777779999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcc
Q 019503          178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS  257 (340)
Q Consensus       178 ~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  257 (340)
                      ++|.||||+|+|||||++||+||+|++|+|||+|+|+..+++.++.+++.+++.++++.+++++|.+++.+.++..|   
T Consensus       160 vtp~AEfNi~~DPeAA~iVf~sg~~i~mv~LdvT~q~~~t~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~g~~g---  236 (311)
T COG1957         160 VTPAAEFNIWVDPEAAKIVFTSGWPITMVPLDVTHQVLLTPDVLARLRAAGGPAAELVADLLDFYLAYYKSRQGLDG---  236 (311)
T ss_pred             cCcchhhhhccCHHHHHHHHhCCCceEEechhhhhhhcCCHHHHHHHHHhCCccHHHHHHHHHHHHHHHhhccCCCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988777888   


Q ss_pred             ccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503          258 FKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL  336 (340)
Q Consensus       258 ~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~  336 (340)
                         .++||++|++++++|++|++++.+|+||+.| .++|+|++|+..       .+...+|++++.++|.++|++++.++
T Consensus       237 ---~~~hD~~a~a~l~~p~l~~~~~~~V~Ve~~~~lt~G~Tv~d~~~-------~~~~~~n~~v~~~vD~~~f~~~i~~~  306 (311)
T COG1957         237 ---APLHDPLAVAYLLDPELFTTREANVDVETAGGLTRGMTVVDWRG-------VLGKPPNAQVAVDVDVEGFLDLILEA  306 (311)
T ss_pred             ---CCcccHHHHHHHhChhhhcceEEEEEEEeCCCCcCcceEEEecc-------cCCCCCCeEEeeccCHHHHHHHHHHH
Confidence               8999999999999999999999999999997 899999999852       23567899999999999999999999


Q ss_pred             Hhc
Q 019503          337 LMK  339 (340)
Q Consensus       337 l~~  339 (340)
                      |.+
T Consensus       307 l~~  309 (311)
T COG1957         307 LAR  309 (311)
T ss_pred             Hhc
Confidence            864

>PLN02717 uridine nucleosidase Back     alignment and domain information
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional Back     alignment and domain information
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases Back     alignment and domain information
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases Back     alignment and domain information
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional Back     alignment and domain information
>PRK10768 ribonucleoside hydrolase RihC; Provisional Back     alignment and domain information
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans Back     alignment and domain information
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB) Back     alignment and domain information
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional Back     alignment and domain information
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH Back     alignment and domain information
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases Back     alignment and domain information
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3 Back     alignment and domain information
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax Back     alignment and domain information
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases Back     alignment and domain information
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases Back     alignment and domain information
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
1ezr_A314 Crystal Structure Of Nucleoside Hydrolase From Leis 5e-42
1yoe_A322 Crystal Structure Of A The E. Coli Pyrimidine Nucle 2e-38
3g5i_A312 Crystal Structure Of The E.Coli Riha Pyrimidine Nuc 2e-38
3b9x_A333 Crystal Structure Of The E. Coli Pyrimidine Nucleos 2e-37
3mkm_A316 Crystal Structure Of The E. Coli Pyrimidine Nucleos 2e-37
1mas_A314 Purine Nucleoside Hydrolase Length = 314 7e-37
1q8f_A313 Crystal Structure Of The E.Coli Pyrimidine Nucleosi 1e-36
3t8j_A311 Structural Analysis Of Thermostable S. Solfataricus 2e-36
3t8i_A306 Structural Analysis Of Thermostable S. Solfataricus 6e-32
3fz0_A360 Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh) Leng 5e-16
2c40_A312 Crystal Structure Of Inosine-Uridine Preferring Nuc 1e-13
1hp0_A339 Crystal Structure Of An Inosine-Adenosine-Guanosine 5e-08
3epw_A338 Crystal Structure Of Trypanosoma Vivax Nucleoside H 5e-08
3b9g_A328 Crystal Structure Of Loop Deletion Mutant Of Trypan 7e-08
1r4f_A339 Inosine-Adenosine-Guanosine Preferring Nucleoside H 8e-08
1kic_A339 Inosine-adenosine-guanosine Preferring Nucleoside H 2e-07
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania Major Length = 314 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 159/285 (55%), Gaps = 12/285 (4%)
Query: 19  PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGV 78
           P K+I+D DPGIDD++ I +A   PE+E+L +TT+ GN + E  T+NA  + ++AG  GV
Sbjct: 2   PRKIILDCDPGIDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGIVGV 61
Query: 79  PVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD-KNASEFLVDKV-SEYPGE 136
           PVA G  +PL  G  R A   HG  GMGN+S  P    K D ++A + ++D + S  P  
Sbjct: 62  PVAAGCTKPLVRGV-RNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDLIMSHEPKT 120
Query: 137 VSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVV 196
           ++++  G LTN+A+A++ +     +VK +V++GG +   GN +P AE N++ DPEAA +V
Sbjct: 121 ITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYHT-GNASPVAEFNVFIDPEAAHIV 179
Query: 197 FTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNF 256
           F    N+ +VG+++T     T A    +R+   +    +  +  FY   + K    +G  
Sbjct: 180 FNESWNVTMVGLDLTHLALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKEHDTYGK- 238
Query: 257 SFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMD 300
                 +HDP +   ++ P + T ++  V +E  G +  G T+ D
Sbjct: 239 ------VHDPCAVAYVIDPTVMTTERVPVDIELNGALTTGMTVAD 277
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside Hydrolase Ybek With Bound Ribose Length = 322 Back     alignment and structure
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine Nucleosidase Bound To A Iminoribitol-Based Inhibitor Length = 312 Back     alignment and structure
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside Hydrolase Yeik In Complex With Inosine Length = 333 Back     alignment and structure
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside Hydrolase Yeik (Apo-Form) Length = 316 Back     alignment and structure
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase Length = 314 Back     alignment and structure
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside Hydrolase Yeik Length = 313 Back     alignment and structure
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus Pyrimidine- Specific Nucleoside Hydrolase Length = 311 Back     alignment and structure
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus Purine-Specific Nucleoside Hydrolase Length = 306 Back     alignment and structure
>pdb|3FZ0|A Chain A, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh) Length = 360 Back     alignment and structure
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside Hydrolase From Bacillus Anthracis At 2.2a Resolution Length = 312 Back     alignment and structure
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine- Preferring Nucleoside Hydrolase From Trypanosoma Vivax In Complex With The Substrate Analogue 3-Deaza-Adenosine Length = 339 Back     alignment and structure
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside Hydrolase In Complex With The Inhibitor (2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2- D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3, 4-Diol Length = 338 Back     alignment and structure
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh Length = 328 Back     alignment and structure
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In Complex With 3- Deaza-Adenosine Length = 339 Back     alignment and structure
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In Complex With Inosine Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
3t8j_A311 Purine nucleosidase, (IUNH-1); nucleoside hydrolas 1e-133
2mas_A314 Inosine-uridine nucleoside N-ribohydrolase; purine 1e-128
1yoe_A322 Hypothetical protein YBEK; pyrimidine nucleoside h 1e-126
1q8f_A313 Pyrimidine nucleoside hydrolase; open alpha-beta s 1e-124
3t8i_A306 Purine nucleosidase, (IUNH-2); purine nucleoside h 1e-122
2c40_A312 Inosine-uridine preferring nucleoside hydrolase F 1e-120
3epw_A338 IAG-nucleoside hydrolase; rossmann fold, active si 1e-107
3fz0_A360 Nucleoside hydrolase, putative; NH fold, open alph 1e-105
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus} Length = 311 Back     alignment and structure
 Score =  381 bits (980), Expect = e-133
 Identities = 90/319 (28%), Positives = 161/319 (50%), Gaps = 15/319 (4%)

Query: 21  KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 80
             IID D   DD +++ +  +   ++++ +T + GN++ E   +NAL   E      +PV
Sbjct: 3   HFIIDCDTAEDDVLSLYLLLK-NNIDVVAVTIVEGNISYEQEVKNALWALEQVN-REIPV 60

Query: 81  AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSIL 140
             G+ +PL        E  HG  G+G++++ P + K  +K+A+  ++D  +EY GE+  L
Sbjct: 61  YPGANKPLLK-NYITVEKVHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFL 119

Query: 141 ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200
           A+ PLTNLALA   D+S   K+K + V+GGA F +GN+ P AE NI+ DP+AA +VF +G
Sbjct: 120 AISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNITPVAEFNIWVDPDAAKIVFNAG 179

Query: 201 ANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKS 260
            +I ++  ++     +TD ++  ++  K R  +L   M   YR +      ++G      
Sbjct: 180 FDITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKING------ 233

Query: 261 IFLHDPVSFVALVRPDLFTFKKGV-VRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPV 318
               D ++    +   + T ++   V ++    I  G TL+D    R++    W+     
Sbjct: 234 HPHPDAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVD----RFDADTSWSDKPNA 289

Query: 319 SVAWTVNVDKVLNYIKRLL 337
            + + +N    +  I  LL
Sbjct: 290 EIVYEINKKSFMEKIYDLL 308
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A Length = 314 Back     alignment and structure
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Length = 322 Back     alignment and structure
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A* Length = 313 Back     alignment and structure
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus} Length = 306 Back     alignment and structure
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis} Length = 312 Back     alignment and structure
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A* Length = 338 Back     alignment and structure
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei} Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
1q8f_A313 Pyrimidine nucleoside hydrolase; open alpha-beta s 100.0
3t8j_A311 Purine nucleosidase, (IUNH-1); nucleoside hydrolas 100.0
1yoe_A322 Hypothetical protein YBEK; pyrimidine nucleoside h 100.0
2mas_A314 Inosine-uridine nucleoside N-ribohydrolase; purine 100.0
3t8i_A306 Purine nucleosidase, (IUNH-2); purine nucleoside h 100.0
3fz0_A360 Nucleoside hydrolase, putative; NH fold, open alph 100.0
2c40_A312 Inosine-uridine preferring nucleoside hydrolase F 100.0
3epw_A338 IAG-nucleoside hydrolase; rossmann fold, active si 100.0
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 99.29
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A* Back     alignment and structure
Probab=100.00  E-value=2.5e-81  Score=594.87  Aligned_cols=306  Identities=29%  Similarity=0.519  Sum_probs=284.6

Q ss_pred             CCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccc
Q 019503           18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE   97 (340)
Q Consensus        18 ~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~   97 (340)
                      +++|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+. |+.+||||+|+.+||.++. ..++
T Consensus         2 ~~~~vIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~-g~~dIPV~~Ga~~pl~~~~-~~a~   79 (313)
T 1q8f_A            2 EKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQK-LEINVPVYAGMPQPIMRQQ-IVAD   79 (313)
T ss_dssp             -CEEEEEEECCCHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHH-TTCCCCEEECCSSCSSSCC-CCCH
T ss_pred             CCceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCCCHHHHHHHHHHHHHc-CCCCCCEEeCCCccccCCC-CCcc
Confidence            4689999999999999999999999999999999999999999999999999999 9999999999999998754 4567


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503           98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN  177 (340)
Q Consensus        98 ~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn  177 (340)
                      ++||.+|||+..+|++...+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||||||++.. ||
T Consensus        80 ~~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~~-GN  158 (313)
T 1q8f_A           80 NIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGT-GN  158 (313)
T ss_dssp             HHHCTTSSCSCCCCCCCCCCCSSCHHHHHHHHHHHSCSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSSC-CS
T ss_pred             ccCCCcCCCCCCCCCCccCCCCCcHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHCHHHHHhCCEEEEECCCCCC-CC
Confidence            79999999999998887777788999999999999999999999999999999999999999999999999999975 99


Q ss_pred             CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcc
Q 019503          178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS  257 (340)
Q Consensus       178 ~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  257 (340)
                      ++|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..|   
T Consensus       159 ~tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g---  235 (313)
T 1q8f_A          159 FTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAG---  235 (313)
T ss_dssp             SSSSCCHHHHTCHHHHHHHHTSCSCEEEECHHHHGGGEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCSS---
T ss_pred             CCchhHHhhccCHHHHHHHHhCCCCEEEeChhhhhcccCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCcCC---
Confidence            99999999999999999999999999999999999999999999999988889999999999999988876556677   


Q ss_pred             ccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503          258 FKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL  336 (340)
Q Consensus       258 ~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~  336 (340)
                         +++||++|++++++|++|++++.+|+|+++| .+||+|++|+.+.       ++..+|++|+++||.++|+++|.++
T Consensus       236 ---~~lhD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~  305 (313)
T 1q8f_A          236 ---GPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGV-------LGKPANTKVGITIDTDWFWGLVEEC  305 (313)
T ss_dssp             ---EECTTHHHHHHHHCGGGEEEEEECEEECCCSSTTTTCEEECTTCT-------TCCCCCEEEEEEECHHHHHHHHHHH
T ss_pred             ---CccchHHHHHHHcCcceeEEEEEEEEEEeCCCCCCCeEEEecccc-------CCCCCCEEEEEecCHHHHHHHHHHH
Confidence               8999999999999999999999999999986 7999999997431       2346799999999999999999999


Q ss_pred             Hhc
Q 019503          337 LMK  339 (340)
Q Consensus       337 l~~  339 (340)
                      |.+
T Consensus       306 l~~  308 (313)
T 1q8f_A          306 VRG  308 (313)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            864
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus} Back     alignment and structure
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Back     alignment and structure
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A Back     alignment and structure
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus} Back     alignment and structure
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei} Back     alignment and structure
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis} Back     alignment and structure
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A* Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 340
d2masa_313 c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohyd 3e-78
d1kica_327 c.70.1.1 (A:) Inosine-adenosine-guanosine preferri 9e-78
d1q8fa_308 c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK 4e-77
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]} Length = 313 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleoside hydrolase
superfamily: Nucleoside hydrolase
family: Nucleoside hydrolase
domain: Inosine-uridine nucleoside N-ribohydrolase, IU-NH
species: Crithidia fasciculata [TaxId: 5656]

 Score =  240 bits (612), Expect = 3e-78
 Identities = 91/320 (28%), Positives = 158/320 (49%), Gaps = 18/320 (5%)

Query: 21  KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 80
           K+I+D DPG+DD++ IL+A   PE+E+L +TT+ GN T    TRNA  + ++AG  GVP+
Sbjct: 3   KIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPI 62

Query: 81  AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNAS--EFLVDKVSEYPGEVS 138
           A G  +PL   K   A   HG  GMG ++       K D+  +    +   +S  P  ++
Sbjct: 63  AAGCDKPLV-RKIMTAGHIHGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTIT 121

Query: 139 ILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFT 198
           ++  G LTN+A+A + +     +VK +V++GG +   GN    AE NI  DPEAA +VF 
Sbjct: 122 LVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHE-GNATSVAEFNIIIDPEAAHIVFN 180

Query: 199 SGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSF 258
               + +VG+++T Q   T      +++      + + ++  +Y   +  +  +      
Sbjct: 181 ESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAA---- 236

Query: 259 KSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSP 317
               +HDP +   ++ P + T ++  V +E  G + +G T+ D         NP   +  
Sbjct: 237 --AAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADF-------RNPRPEHCH 287

Query: 318 VSVAWTVNVDKVLNYIKRLL 337
             VA  ++ +K    +   L
Sbjct: 288 TQVAVKLDFEKFWGLVLDAL 307
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Length = 327 Back     information, alignment and structure
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]} Length = 308 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d2masa_313 Inosine-uridine nucleoside N-ribohydrolase, IU-NH 100.0
d1q8fa_308 Pyrimidine nucleoside hydrolase YeiK {Escherichia 100.0
d1kica_327 Inosine-adenosine-guanosine preferring nucleoside 100.0
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleoside hydrolase
superfamily: Nucleoside hydrolase
family: Nucleoside hydrolase
domain: Inosine-uridine nucleoside N-ribohydrolase, IU-NH
species: Crithidia fasciculata [TaxId: 5656]

Probab=100.00  E-value=4.2e-78  Score=571.17  Aligned_cols=305  Identities=29%  Similarity=0.502  Sum_probs=282.4

Q ss_pred             CeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccccc
Q 019503           20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA   99 (340)
Q Consensus        20 ~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~   99 (340)
                      ||||||||+|+||++||+|||++|++||+|||||+||++.+++++|++++|+.+|+.+||||.|+..|+.... ....++
T Consensus         2 kkvIiDtD~G~DDa~Al~~al~~p~vel~gIt~v~GN~~~~~~~~n~~~ll~~~g~~~iPV~~G~~~~~~~~~-~~~~~~   80 (313)
T d2masa_           2 KKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKI-MTAGHI   80 (313)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCCSCCEEECCSSCSSSCC-CCCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCcEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCcEEecCCCcccccc-cchhhc
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998764 466789


Q ss_pred             cCCCCCCCCCCCCCCCC-CCCccHHHHHHHHHHcC-CCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503          100 HGSDGMGNISLTPPKAK-KCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN  177 (340)
Q Consensus       100 hG~dglg~~~~p~~~~~-~~~~~a~~~l~~~~~~~-p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn  177 (340)
                      ||.+|+|+..+|.+... ..+.+|++++++.++++ |++||||++|||||||+||+++|++.++||+||||||++. +||
T Consensus        81 ~g~~g~g~~~~p~~~~~~~~~~~a~~~~i~~~~~~~p~~itiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~-~GN  159 (313)
T d2masa_          81 HGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYH-EGN  159 (313)
T ss_dssp             HCSSSSTTCCCCSSCSSCBCSSCHHHHHHHHHHHSCTTCEEEEECSCSHHHHHHHHHCTHHHHHSCEEEEECCCSS-CCS
T ss_pred             cccCCCCCccCCccccccccchhhhHHHHHHHhhcCCCcEEEEEcCCchHHHHHHHhhhhhhhhcCeEEEeccCCC-CCC
Confidence            99999999988765543 45788999999887765 8999999999999999999999999999999999999996 799


Q ss_pred             CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcc
Q 019503          178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS  257 (340)
Q Consensus       178 ~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  257 (340)
                      ++|.+|||||+|||||++||+|++|++++|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+..+..|   
T Consensus       160 ~~~~aEfN~~~DPeAA~iVl~s~~~i~~v~ldvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  236 (313)
T d2masa_         160 ATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAA---  236 (313)
T ss_dssp             SSSSCCHHHHTCHHHHHHHHHSSSCEEEECHHHHTTCEECHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHSTTCCSS---
T ss_pred             CccccccceeeChHHHHHHhccCCCeEEecchhhhcccCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCcCC---
Confidence            99999999999999999999999999999999999999999999999998899999999999999998877666677   


Q ss_pred             ccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503          258 FKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL  336 (340)
Q Consensus       258 ~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~  336 (340)
                         +++||++|++++++|++|++++.+|+||++| .+||+|++|+...       +.+.+|++|+++||.++|+++|+++
T Consensus       237 ---~~l~D~lA~a~~idP~l~~~~~~~v~Vet~g~~trG~tv~d~~~~-------~~~~~n~~V~~~vD~~~F~~~l~~~  306 (313)
T d2masa_         237 ---AAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNP-------RPEHCHTQVAVKLDFEKFWGLVLDA  306 (313)
T ss_dssp             ---EECCHHHHHHHHHCGGGEEEEECCEEECSSCSSCTTCEEECCCSS-------CCSSCSEEEEEEECHHHHHHHHHHH
T ss_pred             ---CccCcHHHhHHhcCcceeEEEEEeEEEEeCCCCCCCeEEEecccC-------CCCCCCeEEEeeCCHHHHHHHHHHH
Confidence               8999999999999999999999999999997 7999999997532       3456899999999999999999999


Q ss_pred             Hhc
Q 019503          337 LMK  339 (340)
Q Consensus       337 l~~  339 (340)
                      |.+
T Consensus       307 L~r  309 (313)
T d2masa_         307 LER  309 (313)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            865
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Back     information, alignment and structure