Citrus Sinensis ID: 019513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTILE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHcccEEEEcccccHHHHHHHHHHccccEEEEEcccccccccccHHHHccccccccHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHcccEEEEccccHHHHHHHHHHHHHHcccEEEEEEccEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccEEEEEEcccccccccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcHHccHHHHHHHHHccEEEEEcccccHHHHHHHHHccccEEEEEEcccEEcccHHHHEEcccccccccHHHHHHHHHHHHccccEEEEEcEEccHHHHHHHHHcccEEEEccccccHHHHHHHHHHHcccccEEEEEEEEccEEEEEcccccccccccccccccccccccHcccccEccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEccccccccccccccccccccHccccHHHHccccHHHHcc
Coil and Loop (DISEMBL)
METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLrdttvsqpqtdtvsngsyrpssavdyglspdMIYRYSRHlllpsfgvegqsnlLKSSILVIgagglgspALLYLAACGvgrlgivdhDVVELNNMHRqvihtepyigqskvksAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDatdnapsrymISDCCVvlgkplvsgaalglegqltvynynggpcyrclfptpppttacqrcadsgvlgvvpGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIrgrssqceacgenstftqdhfrnfdyekftqsplstile
Flexible Loop (DISEMBL)
metnggstdvarVLGEIETLKAAKSDIDYRISALEaqlrdttvsqpqtdtvsngsyrpssaVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIrgrssqceacgenstftqdhfrnfdyekftqsplstile
Low Complexity Region (SEG)
METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTILE
Disordered region (IsUnstruct)
************VLGEIETLKAAKSDIDYRISAL***************************VDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEK***********
Disordered Region (DISOPRED)
**************GEIETLKAAKSDIDYR*************************************PDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP******
Disordered Region (DISEMBL)
METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLR*******************SSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG*********TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTILE
Disordered Region (DISPRO)
**********ARVLGEIETLKAAKSDIDYRISALEAQLRDTT********************DYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTILE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q9ZNW0	464	Adenylyltransferase and s	yes	no	0.976	0.715	0.755	1e-149
B4FAT0	482	Adenylyltransferase and s	N/A	no	0.944	0.665	0.664	1e-126
B6TNK6	468	Adenylyltransferase and s	N/A	no	0.944	0.685	0.661	1e-126
A3ACF3	445	Adenylyltransferase and s	yes	no	0.870	0.665	0.561	1e-101
Q58E95	451	Adenylyltransferase and s	N/A	no	0.779	0.587	0.544	2e-80
B0W377	438	Adenylyltransferase and s	N/A	no	0.885	0.687	0.449	9e-79
Q8AWD2	459	Adenylyltransferase and s	yes	no	0.873	0.647	0.474	1e-78
Q17CA7	437	Adenylyltransferase and s	N/A	no	0.767	0.597	0.520	4e-78
Q7PY41	441	Adenylyltransferase and s	yes	no	0.767	0.591	0.524	1e-77
B4NXF7	453	Adenylyltransferase and s	N/A	no	0.932	0.699	0.461	2e-77

>sp|Q9ZNW0|MOCS3_ARATH Adenylyltransferase and sulfurtransferase MOCS3 OS=Arabidopsis thaliana GN=MOCS3 PE=2 SV=1

 Score =  526 bits (1355), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/336 (75%), Positives = 293/336 (87%), Gaps = 4/336 (1%)

Query: 1   METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNG-SYRPS 59
           M +NGG  D + ++ E+E LK  K++I++RIS LEA+L+DT   +   D VSNG SY  +
Sbjct: 1   MMSNGG--DSSEIVRELEELKLKKAEIEHRISTLEAKLQDTAAVE-LYDAVSNGDSYLTA 57

Query: 60  SAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGR 119
             +++GLSPD IYRYSR LLLPSF VEGQSNLLKSS+LVIGAGGLGSPALLYLAACGVG+
Sbjct: 58  PELEHGLSPDQIYRYSRQLLLPSFAVEGQSNLLKSSVLVIGAGGLGSPALLYLAACGVGQ 117

Query: 120 LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALE 179
           LGI+DHDVVELNNMHRQ+IHTE +IG  KVKSAAA CRSINST+ + E+ EALRTSNALE
Sbjct: 118 LGIIDHDVVELNNMHRQIIHTEAFIGHPKVKSAAAACRSINSTIKVDEYVEALRTSNALE 177

Query: 180 ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP 239
           ILSQY+I+VDATDN PSRYMISDCCV+LGKPLVSGAALG+EGQLTVYN+NGGPCYRCLFP
Sbjct: 178 ILSQYDIIVDATDNPPSRYMISDCCVLLGKPLVSGAALGMEGQLTVYNHNGGPCYRCLFP 237

Query: 240 TPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV 299
           TPPPT+ACQRC+DSGVLGVVPG+IGCLQALE IK+AS VGEPLS RMLLFDALSAR+RIV
Sbjct: 238 TPPPTSACQRCSDSGVLGVVPGVIGCLQALETIKLASLVGEPLSERMLLFDALSARMRIV 297

Query: 300 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPL 335
           KIRGRSSQC  CG+NS+F +  F++FDYE FTQ PL
Sbjct: 298 KIRGRSSQCTVCGDNSSFNKQTFKDFDYEDFTQFPL 333

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 1EC: 1

>sp|B4FAT0|MOC32_MAIZE Adenylyltransferase and sulfurtransferase MOCS3 2 OS=Zea mays GN=MOCS3-2 PE=2 SV=1

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/334 (66%), Positives = 255/334 (76%), Gaps = 13/334 (3%)

Query: 16  EIETLKAAKSDIDYRISALEAQLR-------DTTVSQPQTDTVSNGSYRPSSAVDYGLSP 68
           E++ L+A + ++D RI  LE+QL             +   D    GS    S V  G +P
Sbjct: 25  ELKKLRAEREELDGRIRLLESQLEAGPAGFNGAAAGKGVGDDACGGSGACQSRVGNGFAP 84

Query: 69  D------MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGI 122
           D      MIYRYSRHLLLP FGVEGQ  L +SSILV+GAGGLGSP  LYLAACGVG LGI
Sbjct: 85  DGSLPADMIYRYSRHLLLPDFGVEGQRKLSQSSILVVGAGGLGSPLALYLAACGVGCLGI 144

Query: 123 VDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILS 182
           VD D VELNN+HRQ+IH E Y+GQSKVKSAA  CR INS + ++EH   L+  NALEI  
Sbjct: 145 VDGDDVELNNLHRQIIHKEAYVGQSKVKSAADACREINSAIKVVEHHHTLKPCNALEIAR 204

Query: 183 QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPP 242
           +Y+IVVDATDN P+RYMISDCCV+L KPLVSGAALGLEGQLTVY++NG PCYRCLFPTPP
Sbjct: 205 KYDIVVDATDNLPTRYMISDCCVLLNKPLVSGAALGLEGQLTVYHHNGSPCYRCLFPTPP 264

Query: 243 PTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIR 302
           P  ACQRC+DSGVLGVVPG+IGCLQALEAIKVA+ VGEPL GRMLLFDALSARIR+VK+R
Sbjct: 265 PVAACQRCSDSGVLGVVPGVIGCLQALEAIKVATGVGEPLCGRMLLFDALSARIRVVKLR 324

Query: 303 GRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLS 336
           G S  C  CGENS FT++ F+ FDYE FTQSP+S
Sbjct: 325 GSSPDCTHCGENSVFTEEDFQKFDYESFTQSPMS 358

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|B6TNK6|MOC31_MAIZE Adenylyltransferase and sulfurtransferase MOCS3 1 OS=Zea mays GN=MOCS3-1 PE=2 SV=1

 Score =  449 bits (1156), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/334 (66%), Positives = 256/334 (76%), Gaps = 13/334 (3%)

Query: 16  EIETLKAAKSDIDYRISALEAQLR-------DTTVSQPQTDTVSNGSYRPSSAV------ 62
           E++ L+A + ++D RI  LE+QL             +   D    GS    S V      
Sbjct: 11  ELKKLRAEREELDGRIRLLESQLEAGPAGFNGAAAGKGVGDDACGGSGACQSRVGNEFAP 70

Query: 63  DYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGI 122
           D  L  DMIYRYSRHLLLP FGVEGQ  L +SSILV+GAGGLGSP  LYLAACGVGRLGI
Sbjct: 71  DGSLPADMIYRYSRHLLLPDFGVEGQRKLSQSSILVVGAGGLGSPLALYLAACGVGRLGI 130

Query: 123 VDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILS 182
           VD D VELNN+HRQ+IH E Y+GQSKVKSAA  CR INS++ ++E+   L+  NALE+  
Sbjct: 131 VDGDDVELNNLHRQIIHKEAYVGQSKVKSAADACREINSSIKVVEYHHTLKPCNALEVAR 190

Query: 183 QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPP 242
           +Y+IVVDATDN P+RYMISDCCV+L KPLVSGAALGLEGQLTVY++NG PCYRCLFPTPP
Sbjct: 191 KYDIVVDATDNLPTRYMISDCCVLLNKPLVSGAALGLEGQLTVYHHNGSPCYRCLFPTPP 250

Query: 243 PTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIR 302
           P  ACQRC+DSGVLGVVPG+IGCLQALEAIKVA+ VGEPL GRMLLFDALSARIR+VK+R
Sbjct: 251 PVAACQRCSDSGVLGVVPGVIGCLQALEAIKVATGVGEPLCGRMLLFDALSARIRVVKLR 310

Query: 303 GRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLS 336
           G S  C  CGENS FT++ F+ FDYE FTQSP+S
Sbjct: 311 GSSPDCTHCGENSVFTEEDFQKFDYESFTQSPMS 344

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|A3ACF3|MOCS3_ORYSJ Adenylyltransferase and sulfurtransferase MOCS3 OS=Oryza sativa subsp. japonica GN=MOCS3 PE=3 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/326 (56%), Positives = 230/326 (70%), Gaps = 30/326 (9%)

Query: 13  VLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPS--SAVDYGLSPDM 70
           ++ E+E L+A + ++D RI  LE+QLR   +        +     P+   +     + DM
Sbjct: 17  IMRELERLRAEREELDGRIRLLESQLR---LGAAPLPPSAAAEVEPTGSPSSSSSAAADM 73

Query: 71  IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
           I RY RHLLLP FG+EGQ  L +SSILV+GAGGLGSP  +YLAACGVG LGIVD D VEL
Sbjct: 74  ISRYRRHLLLPQFGLEGQRKLSQSSILVVGAGGLGSPVAMYLAACGVGCLGIVDGDRVEL 133

Query: 131 NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDA 190
           +N+HRQ+IH E Y+GQ KVKS AA+CR+                         Y+IVVDA
Sbjct: 134 DNLHRQIIHIEAYVGQPKVKSTAASCRA-------------------------YDIVVDA 168

Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
           T+N PSRYMISDCCV++ KPL+SG+A+GLEGQLTVY++NG PCYRCL+P PP +   Q C
Sbjct: 169 TNNLPSRYMISDCCVLMNKPLISGSAVGLEGQLTVYHHNGSPCYRCLYPNPPSSPTSQSC 228

Query: 251 ADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEA 310
           +D+G+LG++PG+IGCLQALEAIKVA+AVG+PL GRML FDALS+  RIVKI   S  C+ 
Sbjct: 229 SDNGILGILPGVIGCLQALEAIKVATAVGKPLCGRMLHFDALSSHTRIVKISRSSPTCKV 288

Query: 311 CGENSTFTQDHFRNFDYEKFTQSPLS 336
           CGEN  FT++ F NFDYE FTQSP+S
Sbjct: 289 CGENPVFTKEDFVNFDYESFTQSPMS 314

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q58E95|MOCS3_XENLA Adenylyltransferase and sulfurtransferase MOCS3 OS=Xenopus laevis GN=mocs3 PE=2 SV=1

 Score =  299 bits (765), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 147/270 (54%), Positives = 187/270 (69%), Gaps = 5/270 (1%)

Query: 67  SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
           +PD I RYSR L+LP  GV+GQ  L K+S+LVIG GGLG P   YLAA G+GRLG++D+D
Sbjct: 51  NPD-ILRYSRQLVLPDLGVQGQLKLSKASVLVIGCGGLGCPVAQYLAASGIGRLGLLDYD 109

Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEI 186
           VVE++N+HRQV+H E  +G SK  S A T R +NS V  + +  +L   NAL+I+ QY+I
Sbjct: 110 VVEMSNLHRQVLHGENRLGMSKSVSVAKTLRKLNSAVVYLPYHISLNPENALQIIQQYDI 169

Query: 187 VVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTA 246
           + D +DN P+RY+++D CV+ GKPLVS +AL  EGQLTVYNY+ GPCYRCLFP PPP+  
Sbjct: 170 IADCSDNVPTRYLVNDTCVLAGKPLVSASALRWEGQLTVYNYHQGPCYRCLFPKPPPSET 229

Query: 247 CQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSS 306
              CAD GVLG+VPGIIG LQALE +K+AS +    SG +L+FDAL  R R +KIRG+ +
Sbjct: 230 VTNCADGGVLGIVPGIIGSLQALEVLKIASGMAPSYSGVLLMFDALEGRFRNIKIRGKKN 289

Query: 307 QCEACGENSTFTQDHFRNFDYEKFTQSPLS 336
            C AC   S          DYE F  S  S
Sbjct: 290 DCAACSNPSETAILQ----DYEAFCGSSAS 315

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and mocs2a. Its N-terminus first activates urm1 and mocs2a as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and mocs2a to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards urm1 and mocs2a. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; nfs1 probably acting as a sulfur donor for thiocarboxylation reactions.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|B0W377|MOCS3_CULQU Adenylyltransferase and sulfurtransferase MOCS3 OS=Culex quinquefasciatus GN=CPIJ001621 PE=3 SV=1

 Score =  293 bits (751), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 146/325 (44%), Positives = 203/325 (62%), Gaps = 24/325 (7%)

Query: 6   GSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYG 65
           G T++A +  +I TL+    +   ++  L+   +   +++                    
Sbjct: 3   GDTEIAELESDIRTLRKQLKEKVQQLKTLKKHFQKNCITK-------------------- 42

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           L+ + I RYSR ++L   GV+GQ  L ++S+LV+GAGGLG P+ LYLA  GVG +GI+D+
Sbjct: 43  LNNNEIARYSRQIILSEIGVQGQLKLKRASVLVVGAGGLGCPSSLYLAGAGVGHIGILDY 102

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D VEL N+HRQ++HTE  +G +KV SA    + +NS + +  H   L + NAL IL QY+
Sbjct: 103 DEVELTNLHRQLLHTESTVGLTKVDSARDYLQELNSQIEVSTHHTQLTSDNALTILEQYD 162

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 245
           IVVDATDN  +RY+++D CV+L KPLVSG+AL LEGQLTVYN+  GPCYRCLFP PPP  
Sbjct: 163 IVVDATDNVATRYLLNDACVLLKKPLVSGSALQLEGQLTVYNHKSGPCYRCLFPNPPPPE 222

Query: 246 ACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRS 305
               C D GVLG + G+IG LQALE IK+       LSGR+LLFD   +  R +K+RG+ 
Sbjct: 223 TVTNCGDGGVLGAITGVIGALQALETIKIILGNDGVLSGRLLLFDGHQSSFRNLKLRGKK 282

Query: 306 SQCEACGENSTFTQDHFRNFDYEKF 330
           + C AC +N + T    +  DYE+F
Sbjct: 283 ADCVACSDNPSLT----KLIDYEQF 303

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Culex quinquefasciatus (taxid: 7176)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q8AWD2|MOCS3_DANRE Adenylyltransferase and sulfurtransferase MOCS3 OS=Danio rerio GN=mocs3 PE=2 SV=1

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/316 (47%), Positives = 200/316 (63%), Gaps = 19/316 (6%)

Query: 16  EIETLKAAKSDIDYRISAL-EAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRY 74
           E+ TLK     I+   S L E Q + T++S  + +T               L+ D I RY
Sbjct: 18  EVATLKKKLDQIEKGNSTLPELQEKVTSLSPLRLNT--------------SLNNDDIMRY 63

Query: 75  SRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH 134
           SR LLLP  GV+GQ  +   S+LV+G GGLG P   YLAA G+GRLG++D+DVVEL+N+H
Sbjct: 64  SRQLLLPELGVKGQIAISNISVLVVGCGGLGCPLAQYLAAAGIGRLGLLDYDVVELSNLH 123

Query: 135 RQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 194
           RQV+HTE   GQ K  SAA     +NSTV  + +   L   NA++++ QY+IV D +DN 
Sbjct: 124 RQVLHTELTQGQPKALSAAQAISRMNSTVQCVPYHLQLSRENAIQLIQQYDIVADCSDNV 183

Query: 195 PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSG 254
           P+RY+++D CV+  +PLVS +AL +EGQLTVYNY GGPCYRCL+P PPP      C+D G
Sbjct: 184 PTRYLVNDACVLTSRPLVSASALRMEGQLTVYNYRGGPCYRCLYPIPPPPETVTNCSDGG 243

Query: 255 VLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGEN 314
           VLGVVPGI+GCLQALE +K+AS      + ++L+FD    R R +++R R  +C  CGE 
Sbjct: 244 VLGVVPGIMGCLQALEVLKIASGQECSFAQQLLMFDGEQTRFRSIRLRSRQKECVVCGEK 303

Query: 315 STFTQDHFRNFDYEKF 330
            T T+      DYE F
Sbjct: 304 PTITELQ----DYEHF 315

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and mocs2a. Its N-terminus first activates urm1 and mocs2a as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and mocs2a to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards urm1 and mocs2a. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; nfs1 probably acting as a sulfur donor for thiocarboxylation reactions.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q17CA7|MOCS3_AEDAE Adenylyltransferase and sulfurtransferase MOCS3 OS=Aedes aegypti GN=AAEL004607 PE=3 SV=1

 Score =  291 bits (746), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 138/265 (52%), Positives = 184/265 (69%), Gaps = 4/265 (1%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           L+ + I RYSR ++L   GV+GQ  L +SS+LV+GAGGLG P+ LYLA  G+GR+GI+D+
Sbjct: 45  LNNNEIARYSRQIILSEIGVQGQLKLKRSSVLVVGAGGLGCPSALYLAGAGIGRIGILDY 104

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D VEL N+HRQ++HTE  +G +KV+S  +    +NS + I+ H   L + NAL+ L  Y+
Sbjct: 105 DEVELTNLHRQLLHTECSVGLTKVESVRSYLEELNSQIEIVTHHIQLTSDNALQTLESYD 164

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 245
           IVVDATDN  +RY+++D CV+L KPLVSG+AL LEGQLTVYN+NGGPCYRCLFP PPP  
Sbjct: 165 IVVDATDNVATRYLLNDACVLLKKPLVSGSALQLEGQLTVYNFNGGPCYRCLFPNPPPPE 224

Query: 246 ACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRS 305
               C D GVLG + G+IG LQALE IK+       LSGR+LLFD   +  R +K+R + 
Sbjct: 225 TVTNCGDGGVLGAITGVIGALQALETIKIILGNSGVLSGRLLLFDGHQSTFRNLKLRPKK 284

Query: 306 SQCEACGENSTFTQDHFRNFDYEKF 330
           + C  C +N + T    +  DYE+F
Sbjct: 285 ADCAVCSDNPSLT----KLIDYEQF 305

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Aedes aegypti (taxid: 7159)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q7PY41|MOCS3_ANOGA Adenylyltransferase and sulfurtransferase MOCS3 OS=Anopheles gambiae GN=AGAP001737 PE=3 SV=4

 Score =  290 bits (742), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/265 (52%), Positives = 182/265 (68%), Gaps = 4/265 (1%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           L+ D I RYSR ++L   GV+GQ  L K+S+LV+GAGGLG PA LYLA  G+GR+G++D+
Sbjct: 46  LNNDEIARYSRQIILSEIGVQGQLKLKKASVLVVGAGGLGCPAALYLAGAGIGRIGVLDY 105

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D VEL N+HRQ++HTE  +G +KV S  +    +NS + I  H   L + NAL +L  Y+
Sbjct: 106 DEVELTNLHRQLLHTEATVGLTKVTSVQSYLEQLNSQIEIETHHAQLTSENALALLEPYD 165

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 245
           +VVDATDN  +RY+++D CV+L KPLVSG+AL LEGQLTVYNY GGPCYRCLFPTPPP  
Sbjct: 166 VVVDATDNVATRYLLNDACVLLRKPLVSGSALQLEGQLTVYNYRGGPCYRCLFPTPPPPE 225

Query: 246 ACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRS 305
           +   C D GVLG + G+IG LQALE IK+  +    L+GR+LLFD   +  R +K+R + 
Sbjct: 226 SVTNCGDGGVLGAITGVIGALQALETIKIILSNEGVLAGRLLLFDGQQSAFRNLKLRPKK 285

Query: 306 SQCEACGENSTFTQDHFRNFDYEKF 330
             C  C E  T T    +  DYE+F
Sbjct: 286 PTCAVCSEAPTLT----KLIDYEQF 306

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Anopheles gambiae (taxid: 7165)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|B4NXF7|MOCS3_DROYA Adenylyltransferase and sulfurtransferase MOCS3 OS=Drosophila yakuba GN=GE18783 PE=3 SV=1

 Score =  289 bits (740), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/323 (46%), Positives = 200/323 (61%), Gaps = 6/323 (1%)

Query: 8   TDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLS 67
           ++ +R+  EI  L+AA +  +  +  LEA +     ++ Q   V N    P  AV   L+
Sbjct: 8   SEQSRLKREIAELRAALNRKEQCLRELEASVSSDASAEEQV--VGNALESPGRAVHTKLT 65

Query: 68  PDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127
            D I RYSR L+LP FGV+GQ  L  SS+L++G GGLG PA  YLAA G GRLG++D+D 
Sbjct: 66  NDDIARYSRQLILPDFGVQGQLKLKNSSVLIVGLGGLGCPAAQYLAAAGCGRLGLIDYDE 125

Query: 128 VELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIV 187
           VE +N HRQ++H+E   G SK +SA      +N    I  H   L + NAL I+  Y++V
Sbjct: 126 VERSNFHRQILHSESRCGMSKAESARIALLELNPHCEIHCHSRLLYSQNALHIIRGYDVV 185

Query: 188 VDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 247
           +D +DN P+RY++SD CV+L KPLVSG+AL ++GQLTVYNY  GPCYRC++P PPP  A 
Sbjct: 186 LDCSDNVPTRYLLSDACVMLRKPLVSGSALKMDGQLTVYNYGNGPCYRCIYPVPPPPEAV 245

Query: 248 QRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQ 307
             C D GVLG V G IG +QALEAIKV   +G+ L+GR+L+FD  S   R ++IR +   
Sbjct: 246 TNCGDGGVLGAVTGTIGAMQALEAIKVIVGLGDVLAGRLLIFDGSSGLFRNIRIRSKRPN 305

Query: 308 CEACGENSTFTQDHFRNFDYEKF 330
           C  C      T+      DYE F
Sbjct: 306 CHVCSAQPLITE----LIDYEMF 324

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Drosophila yakuba (taxid: 7245)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
224061037	460	predicted protein [Populus trichocarpa]	0.967	0.715	0.824	1e-157
255577167	467	ubiquitin-activating enzyme E1, putative	0.973	0.708	0.800	1e-156
449463254	460	PREDICTED: adenylyltransferase and sulfu	0.955	0.706	0.819	1e-156
225460881	465	PREDICTED: adenylyltransferase and sulfu	0.985	0.720	0.798	1e-155
147835980	504	hypothetical protein VITISV_014299 [Viti	0.976	0.658	0.749	1e-152
297796385	464	hypothetical protein ARALYDRAFT_918653 [	0.976	0.715	0.761	1e-148
15240468	464	sulfurtransferase MOCS3 [Arabidopsis tha	0.976	0.715	0.755	1e-147
312281821	466	unnamed protein product [Thellungiella h	0.958	0.699	0.740	1e-144
356552825	457	PREDICTED: adenylyltransferase and sulfu	0.947	0.704	0.756	1e-144
356501556	474	PREDICTED: LOW QUALITY PROTEIN: adenylyl	0.917	0.658	0.750	1e-143

>gi|224061037|ref|XP_002300327.1| predicted protein [Populus trichocarpa] gi|222847585|gb|EEE85132.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 277/336 (82%), Positives = 299/336 (88%), Gaps = 7/336 (2%)

Query: 1   METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSS 60
           ME+ GG  + AR+L EIETLKA +SD+D RISALEAQLR       + + VS  S   S+
Sbjct: 1   MESKGG--EAARILSEIETLKATRSDLDNRISALEAQLRHLNF---EKNNVSCPSI--ST 53

Query: 61  AVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRL 120
              +GLSPDMIYRYSR LLLPSFGV+GQSNLLKSSILV+GAGGLGSPALLYLAACGVG+L
Sbjct: 54  GFGHGLSPDMIYRYSRQLLLPSFGVQGQSNLLKSSILVVGAGGLGSPALLYLAACGVGQL 113

Query: 121 GIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEI 180
           G+VDHDVVELNNMHRQVIHTE YIGQ KVKSAAA CR INST+ I+EH+EALRTSNALEI
Sbjct: 114 GVVDHDVVELNNMHRQVIHTEAYIGQPKVKSAAAACRLINSTIQIVEHQEALRTSNALEI 173

Query: 181 LSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPT 240
           LSQY+I+VDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN+N GPCYRCLFPT
Sbjct: 174 LSQYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNHNRGPCYRCLFPT 233

Query: 241 PPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK 300
           PPPTTACQRCADSGVLGVVPGIIGCLQALEAIK+ASAVGEPLS RMLLFDALSARIRIVK
Sbjct: 234 PPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIASAVGEPLSERMLLFDALSARIRIVK 293

Query: 301 IRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLS 336
           IRGRS QCE CGENS FTQ  F++FDYEKFTQSPLS
Sbjct: 294 IRGRSLQCEVCGENSAFTQQQFKDFDYEKFTQSPLS 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577167|ref|XP_002529467.1| ubiquitin-activating enzyme E1, putative [Ricinus communis] gi|223531083|gb|EEF32933.1| ubiquitin-activating enzyme E1, putative [Ricinus communis]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/341 (80%), Positives = 298/341 (87%), Gaps = 10/341 (2%)

Query: 1   METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRP-- 58
           ME+NG  ++   +L EIETLK  KS+ID RI+ALEAQLR   +   Q DT S+    P  
Sbjct: 1   MESNG--SESTGILREIETLKTEKSNIDNRIAALEAQLRQINL---QNDTASSNGSCPLI 55

Query: 59  ---SSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAAC 115
               S + + LS DMIYRYSRHLLLPSFG++GQSNLLKSSILV+GAGGLGSPALLYLAAC
Sbjct: 56  STNDSGLSHALSSDMIYRYSRHLLLPSFGIQGQSNLLKSSILVVGAGGLGSPALLYLAAC 115

Query: 116 GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS 175
           GVGRLG+VDHDVVELNNMHRQVIHTE +IGQ KVKSAAA CRSINST+ I+EH+EALRTS
Sbjct: 116 GVGRLGVVDHDVVELNNMHRQVIHTEAFIGQPKVKSAAAACRSINSTIQIVEHQEALRTS 175

Query: 176 NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYR 235
           NALEI SQY+I+VDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY GGPCYR
Sbjct: 176 NALEIFSQYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYR 235

Query: 236 CLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR 295
           CLFPTPPP+TACQRCADSGVLGVVPGIIGCLQALEAIK+AS +GEPLSGRMLLFDALSAR
Sbjct: 236 CLFPTPPPSTACQRCADSGVLGVVPGIIGCLQALEAIKIASDIGEPLSGRMLLFDALSAR 295

Query: 296 IRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLS 336
           IRIVKIRGRS QCE CGENS FTQ  FR+FDYEKFTQ+PLS
Sbjct: 296 IRIVKIRGRSLQCEVCGENSAFTQKQFRDFDYEKFTQTPLS 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463254|ref|XP_004149349.1| PREDICTED: adenylyltransferase and sulfurtransferase MOCS3-like [Cucumis sativus] gi|449503207|ref|XP_004161887.1| PREDICTED: adenylyltransferase and sulfurtransferase MOCS3-like [Cucumis sativus]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/327 (81%), Positives = 294/327 (89%), Gaps = 2/327 (0%)

Query: 11  ARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDM 70
           +R+L EIETLK+AK D++ RISALE+QL +  ++QP  + VSN S    S   + LSPDM
Sbjct: 9   SRILHEIETLKSAKFDLERRISALESQLHN--LNQPHNNGVSNASSTSPSTFPHALSPDM 66

Query: 71  IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
           IYRYSRHLLLPSFGV+GQ  L KSSILV+GAGGLGSPALLYLAA GVGRLGIVDHDVVEL
Sbjct: 67  IYRYSRHLLLPSFGVQGQLRLSKSSILVVGAGGLGSPALLYLAASGVGRLGIVDHDVVEL 126

Query: 131 NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDA 190
           NNMHRQ+IHTE YIGQSKV+SAAATCRSINSTV I+EH+EALRTSNALEI S+Y+I+VDA
Sbjct: 127 NNMHRQIIHTEAYIGQSKVESAAATCRSINSTVQIVEHKEALRTSNALEIFSKYDIIVDA 186

Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
           TDNAPSRYMISDCCVV+GKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC
Sbjct: 187 TDNAPSRYMISDCCVVMGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 246

Query: 251 ADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEA 310
           ADSGVLGVVPGIIGCLQALEAIK+ASAVG+PLSGRMLLFDAL+ARIRIVKIRGRS QCE 
Sbjct: 247 ADSGVLGVVPGIIGCLQALEAIKIASAVGDPLSGRMLLFDALAARIRIVKIRGRSVQCEV 306

Query: 311 CGENSTFTQDHFRNFDYEKFTQSPLST 337
           CGENS F    F+ FDYEKFTQ+PLST
Sbjct: 307 CGENSEFKAAQFQEFDYEKFTQTPLST 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460881|ref|XP_002278487.1| PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Vitis vinifera]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/338 (79%), Positives = 301/338 (89%), Gaps = 3/338 (0%)

Query: 1   METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYR-PS 59
           ME+NG   D +R+L EIETLKAAK+DI++RIS LEA+LRD  +       VS  S     
Sbjct: 1   MESNG--EDASRILREIETLKAAKADIEHRISVLEARLRDIPLPNDAISGVSCSSMSIAD 58

Query: 60  SAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGR 119
           SA  +GLSPDMIYRYSRHLLLPSFGV+GQS+LLKSSILV+GAGGLG+PALLYLAACGVG 
Sbjct: 59  SAAGHGLSPDMIYRYSRHLLLPSFGVQGQSSLLKSSILVVGAGGLGAPALLYLAACGVGC 118

Query: 120 LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALE 179
           +G VDHDVVELNN+HRQ+IHTE Y+GQ KV+SAAA CRSINST+ I+EH+EAL TSNALE
Sbjct: 119 IGTVDHDVVELNNLHRQIIHTEAYVGQPKVQSAAAACRSINSTIQIVEHKEALCTSNALE 178

Query: 180 ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP 239
           ILS+Y++V+DATDN PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY GGPCYRCLFP
Sbjct: 179 ILSKYDLVIDATDNVPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFP 238

Query: 240 TPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV 299
           TPPPTTACQRC+DSGVLGVVPGIIGCLQALEAIK+ASAVGEPLSGRMLLFDALSARIRIV
Sbjct: 239 TPPPTTACQRCSDSGVLGVVPGIIGCLQALEAIKIASAVGEPLSGRMLLFDALSARIRIV 298

Query: 300 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLST 337
           KIRGR SQCE CGEN+TFTQ  F++FDYEKFT+SPLST
Sbjct: 299 KIRGRLSQCEVCGENATFTQQKFQDFDYEKFTRSPLST 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835980|emb|CAN66131.1| hypothetical protein VITISV_014299 [Vitis vinifera]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/363 (74%), Positives = 302/363 (83%), Gaps = 31/363 (8%)

Query: 1   METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSS 60
           ME+NG   D +R+L EIETLKAAK+DI++RIS LEA+LRD     P  D +S  S    S
Sbjct: 89  MESNG--EDASRILREIETLKAAKADIEHRISVLEARLRDIP---PPNDAISGVSCSSMS 143

Query: 61  AVD----YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACG 116
             D    +GLSPDMIYRYSRHLLLPSFGV+GQS+LLKSSILV+GAGGLG+PALLYLAACG
Sbjct: 144 IADSAAGHGLSPDMIYRYSRHLLLPSFGVQGQSSLLKSSILVVGAGGLGAPALLYLAACG 203

Query: 117 VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSN 176
           VG +G VDHDVVELNN+HRQ+IHTE Y+GQ KV+SAAA CRSINST+ I+EH+EAL TSN
Sbjct: 204 VGCIGTVDHDVVELNNLHRQIIHTEAYVGQPKVQSAAAACRSINSTIQIVEHKEALXTSN 263

Query: 177 ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRC 236
           ALEILS+Y++V+DATDN PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY GGPCYRC
Sbjct: 264 ALEILSKYDLVIDATDNVPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRC 323

Query: 237 LFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARI 296
           LFPTPPPTTACQRC+DSGVLGVVPGIIGCLQALEAIK+ASAVGEPLSGRMLLFDALSARI
Sbjct: 324 LFPTPPPTTACQRCSDSGVLGVVPGIIGCLQALEAIKIASAVGEPLSGRMLLFDALSARI 383

Query: 297 RI----------------------VKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP 334
           RI                      VKIRGR SQCE CGEN+TFTQ  F++FDYEKFTQSP
Sbjct: 384 RIYYLLVISLSVMLIGEALIDQIQVKIRGRLSQCEVCGENATFTQQKFQDFDYEKFTQSP 443

Query: 335 LST 337
           LST
Sbjct: 444 LST 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796385|ref|XP_002866077.1| hypothetical protein ARALYDRAFT_918653 [Arabidopsis lyrata subsp. lyrata] gi|297311912|gb|EFH42336.1| hypothetical protein ARALYDRAFT_918653 [Arabidopsis lyrata subsp. lyrata]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/336 (76%), Positives = 293/336 (87%), Gaps = 4/336 (1%)

Query: 1   METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNG-SYRPS 59
           M +NGG  D + ++ E+E LK  K+DI++RIS LEA+L+DT   + + DTVSNG SY  +
Sbjct: 1   MMSNGG--DSSEIIRELEELKLKKADIEHRISTLEAKLQDTAAVE-RYDTVSNGDSYPTA 57

Query: 60  SAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGR 119
             + +GLSPD IYRYSR LLLPSF VEGQSNLLKSS+LVIGAGGLGSPALLYLAACGVGR
Sbjct: 58  PELKHGLSPDQIYRYSRQLLLPSFAVEGQSNLLKSSVLVIGAGGLGSPALLYLAACGVGR 117

Query: 120 LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALE 179
           LGI+DHDVVELNNMHRQ+IHTE +IG  KVKSAA  CRSINST+ + E+ EALRTSNALE
Sbjct: 118 LGIIDHDVVELNNMHRQIIHTEAFIGHPKVKSAATACRSINSTIKVDEYVEALRTSNALE 177

Query: 180 ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP 239
           ILSQY+I+VDATDN PSRYMISDCCV+LGKPLVSGAALG+EGQLTVYN+NGGPCYRCLFP
Sbjct: 178 ILSQYDIIVDATDNPPSRYMISDCCVLLGKPLVSGAALGMEGQLTVYNHNGGPCYRCLFP 237

Query: 240 TPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV 299
           TPPPT+ACQRC+DSGVLGVVPG+IGCLQALE IK+AS VGEPLS RMLLFDALSAR+RIV
Sbjct: 238 TPPPTSACQRCSDSGVLGVVPGVIGCLQALETIKLASMVGEPLSERMLLFDALSARMRIV 297

Query: 300 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPL 335
           KIRGRSSQC  CG+NS+F +  F++FDYE FTQ PL
Sbjct: 298 KIRGRSSQCTVCGDNSSFNKQTFKDFDYEDFTQFPL 333

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240468|ref|NP_200324.1| sulfurtransferase MOCS3 [Arabidopsis thaliana] gi|22001817|sp|Q9ZNW0.1|MOCS3_ARATH RecName: Full=Adenylyltransferase and sulfurtransferase MOCS3; AltName: Full=Molybdenum cofactor synthesis protein 3; Includes: RecName: Full=Molybdopterin-synthase adenylyltransferase; AltName: Full=Adenylyltransferase MOCS3; AltName: Full=Sulfur carrier protein MOCS2A adenylyltransferase; Includes: RecName: Full=Molybdopterin-synthase sulfurtransferase; AltName: Full=Sulfur carrier protein MOCS2A sulfurtransferase; AltName: Full=Sulfurtransferase 13; Short=AtStr13; AltName: Full=Sulfurtransferase MOCS3 gi|4337040|gb|AAD18050.1| molybdopterin synthase sulphurylase [Arabidopsis thaliana] gi|4337042|gb|AAD18051.1| molybdopterin synthase sulphurylase [Arabidopsis thaliana] gi|9758110|dbj|BAB08582.1| molybdopterin synthase sulphurylase [Arabidopsis thaliana] gi|115646713|gb|ABJ17091.1| At5g55130 [Arabidopsis thaliana] gi|332009203|gb|AED96586.1| sulfurtransferase MOCS3 [Arabidopsis thaliana]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/336 (75%), Positives = 293/336 (87%), Gaps = 4/336 (1%)

Query: 1   METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNG-SYRPS 59
           M +NGG  D + ++ E+E LK  K++I++RIS LEA+L+DT   +   D VSNG SY  +
Sbjct: 1   MMSNGG--DSSEIVRELEELKLKKAEIEHRISTLEAKLQDTAAVE-LYDAVSNGDSYLTA 57

Query: 60  SAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGR 119
             +++GLSPD IYRYSR LLLPSF VEGQSNLLKSS+LVIGAGGLGSPALLYLAACGVG+
Sbjct: 58  PELEHGLSPDQIYRYSRQLLLPSFAVEGQSNLLKSSVLVIGAGGLGSPALLYLAACGVGQ 117

Query: 120 LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALE 179
           LGI+DHDVVELNNMHRQ+IHTE +IG  KVKSAAA CRSINST+ + E+ EALRTSNALE
Sbjct: 118 LGIIDHDVVELNNMHRQIIHTEAFIGHPKVKSAAAACRSINSTIKVDEYVEALRTSNALE 177

Query: 180 ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP 239
           ILSQY+I+VDATDN PSRYMISDCCV+LGKPLVSGAALG+EGQLTVYN+NGGPCYRCLFP
Sbjct: 178 ILSQYDIIVDATDNPPSRYMISDCCVLLGKPLVSGAALGMEGQLTVYNHNGGPCYRCLFP 237

Query: 240 TPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV 299
           TPPPT+ACQRC+DSGVLGVVPG+IGCLQALE IK+AS VGEPLS RMLLFDALSAR+RIV
Sbjct: 238 TPPPTSACQRCSDSGVLGVVPGVIGCLQALETIKLASLVGEPLSERMLLFDALSARMRIV 297

Query: 300 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPL 335
           KIRGRSSQC  CG+NS+F +  F++FDYE FTQ PL
Sbjct: 298 KIRGRSSQCTVCGDNSSFNKQTFKDFDYEDFTQFPL 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281821|dbj|BAJ33776.1| unnamed protein product [Thellungiella halophila]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/332 (74%), Positives = 288/332 (86%), Gaps = 6/332 (1%)

Query: 11  ARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSA------VDY 64
           + ++ E+E LK  K++I++RIS+L+A+L++T  +  + D VSNG   P +A      + +
Sbjct: 5   SEIIRELEELKLKKAEIEHRISSLKAKLQETAAAAERCDAVSNGYSYPMAAAAIEHGLGH 64

Query: 65  GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD 124
           GLSPD IYRYSR LLLPSFGVEGQ++LLKSS+LVIGAGGLGSPALLYLAACGVGRLGI+D
Sbjct: 65  GLSPDQIYRYSRQLLLPSFGVEGQASLLKSSVLVIGAGGLGSPALLYLAACGVGRLGIID 124

Query: 125 HDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQY 184
           HDVVELNNMHRQ+IHTE +IG  KVKSAAA CRSINST+ I E+ EALRTSNALEILSQY
Sbjct: 125 HDVVELNNMHRQIIHTEAFIGHPKVKSAAAACRSINSTIKIDEYLEALRTSNALEILSQY 184

Query: 185 EIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
           +I+VDATDN PSRYMISDCCV+LGKPLVSGAALG+EGQLTVYN+ GGPCYRCLFPTPPPT
Sbjct: 185 DIIVDATDNPPSRYMISDCCVLLGKPLVSGAALGMEGQLTVYNHKGGPCYRCLFPTPPPT 244

Query: 245 TACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR 304
           TACQRC+DSGVLGVVPG+IGCLQALE +K+AS VGEPL+ RMLLFDALSARIRIVKIRG+
Sbjct: 245 TACQRCSDSGVLGVVPGVIGCLQALETVKLASMVGEPLTERMLLFDALSARIRIVKIRGK 304

Query: 305 SSQCEACGENSTFTQDHFRNFDYEKFTQSPLS 336
           SS C  CG+NS+F +  F++FDYE FTQ PLS
Sbjct: 305 SSLCTVCGDNSSFNKQQFKDFDYEDFTQFPLS 336

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552825|ref|XP_003544763.1| PREDICTED: adenylyltransferase and sulfurtransferase MOCS3-like isoform 1 [Glycine max]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/325 (75%), Positives = 284/325 (87%), Gaps = 3/325 (0%)

Query: 11  ARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDM 70
           + +L E+++LK  K+ I+++ISALEAQLR+  +   Q D     +   SS    GL+ DM
Sbjct: 4   SEILRELDSLKDEKTKIEHKISALEAQLREINL---QNDAAPPNASSSSSYPTNGLTQDM 60

Query: 71  IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
           I+RYSRHL+LPSFGV+GQ+NLLKSSILV+GAGGLG+PALLY AA GVGRLG++DHDVVEL
Sbjct: 61  IHRYSRHLVLPSFGVQGQANLLKSSILVVGAGGLGAPALLYFAASGVGRLGVIDHDVVEL 120

Query: 131 NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDA 190
           NNMHRQVIHTE Y+G+ KVKSAAA C SINST+ ++EH EAL+TSNALEILS+Y+I+VDA
Sbjct: 121 NNMHRQVIHTEAYVGKPKVKSAAAACCSINSTIQVVEHEEALQTSNALEILSKYDIIVDA 180

Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
           TDNAP+RY+ISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP TACQ C
Sbjct: 181 TDNAPTRYLISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPRTACQSC 240

Query: 251 ADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEA 310
           A+ GVLGVVPGIIGCLQALEAIK+A++VGEPLSGRMLL DALS RIRIVKIRGRS QCEA
Sbjct: 241 AEGGVLGVVPGIIGCLQALEAIKIAASVGEPLSGRMLLLDALSGRIRIVKIRGRSMQCEA 300

Query: 311 CGENSTFTQDHFRNFDYEKFTQSPL 335
           CGEN+TFTQ  FR FDYEKFTQ+PL
Sbjct: 301 CGENATFTQQQFREFDYEKFTQTPL 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501556|ref|XP_003519590.1| PREDICTED: LOW QUALITY PROTEIN: adenylyltransferase and sulfurtransferase MOCS3-like [Glycine max]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/325 (75%), Positives = 283/325 (87%), Gaps = 13/325 (4%)

Query: 11  ARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDM 70
           + ++ E+++LK  K+ I+ +ISALEAQLR+  +   Q D          +A   GL+ DM
Sbjct: 4   SEIVRELDSLKDEKTIIEQKISALEAQLREINL---QND----------AAPPNGLTQDM 50

Query: 71  IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
           I+RYSRHL+LPSFGV+GQ+NLLKSSILV+GAGGLG+PALLY AA GVGRLG++DHDVVEL
Sbjct: 51  IHRYSRHLVLPSFGVQGQANLLKSSILVVGAGGLGAPALLYFAASGVGRLGVIDHDVVEL 110

Query: 131 NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDA 190
           NNMHRQVIHTE Y+G+ KVKSAAA CRSINST+ ++EH EALRTSNALE+LS+Y+I+VDA
Sbjct: 111 NNMHRQVIHTEAYVGKPKVKSAAAACRSINSTIQVVEHEEALRTSNALELLSKYDIIVDA 170

Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
           TDNAP+RY+ISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP TACQ C
Sbjct: 171 TDNAPTRYLISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPRTACQSC 230

Query: 251 ADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEA 310
           A+ GVLGVVPGIIGCLQALEAIK+A++VGEPLSGRML+ DALS RIRIVKIRGRS QCEA
Sbjct: 231 AEGGVLGVVPGIIGCLQALEAIKIAASVGEPLSGRMLILDALSGRIRIVKIRGRSMQCEA 290

Query: 311 CGENSTFTQDHFRNFDYEKFTQSPL 335
           CGEN+TFTQ  FR FDYEKFTQ+PL
Sbjct: 291 CGENATFTQQQFREFDYEKFTQTPL 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2161635	464	CNX5 ""co-factor for nitrate,	0.976	0.715	0.755	1.2e-134
UNIPROTKB|E1C3M4	468	MOCS3 "Uncharacterized protein	0.776	0.564	0.552	4.3e-77
UNIPROTKB|A5GFZ6	455	MOCS3 "Adenylyltransferase and	0.914	0.683	0.474	5.5e-77
UNIPROTKB|O95396	460	MOCS3 "Adenylyltransferase and	0.914	0.676	0.468	3.1e-76
UNIPROTKB|A1A4L8	455	MOCS3 "Adenylyltransferase and	0.911	0.681	0.479	6.3e-76
UNIPROTKB|Q58E95	451	mocs3 "Adenylyltransferase and	0.747	0.563	0.552	3.5e-75
UNIPROTKB|E2R7K8	498	MOCS3 "Uncharacterized protein	0.914	0.624	0.468	9.3e-75
MGI|MGI:1916622	460	Mocs3 "molybdenum cofactor syn	0.920	0.680	0.462	2.5e-74
UNIPROTKB|B4NXF7	453	GE18783 "Adenylyltransferase a	0.95	0.713	0.460	1.4e-73
RGD|1307044	458	Mocs3 "molybdenum cofactor syn	0.908	0.674	0.470	2.2e-73

TAIR|locus:2161635 CNX5 ""co-factor for nitrate, reductase and xanthine dehydrogenase 5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 254/336 (75%), Positives = 293/336 (87%)

Query:     1 METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNG-SYRPS 59
             M +NGG  D + ++ E+E LK  K++I++RIS LEA+L+DT   +   D VSNG SY  +
Sbjct:     1 MMSNGG--DSSEIVRELEELKLKKAEIEHRISTLEAKLQDTAAVELY-DAVSNGDSYLTA 57

Query:    60 SAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGR 119
               +++GLSPD IYRYSR LLLPSF VEGQSNLLKSS+LVIGAGGLGSPALLYLAACGVG+
Sbjct:    58 PELEHGLSPDQIYRYSRQLLLPSFAVEGQSNLLKSSVLVIGAGGLGSPALLYLAACGVGQ 117

Query:   120 LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALE 179
             LGI+DHDVVELNNMHRQ+IHTE +IG  KVKSAAA CRSINST+ + E+ EALRTSNALE
Sbjct:   118 LGIIDHDVVELNNMHRQIIHTEAFIGHPKVKSAAAACRSINSTIKVDEYVEALRTSNALE 177

Query:   180 ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP 239
             ILSQY+I+VDATDN PSRYMISDCCV+LGKPLVSGAALG+EGQLTVYN+NGGPCYRCLFP
Sbjct:   178 ILSQYDIIVDATDNPPSRYMISDCCVLLGKPLVSGAALGMEGQLTVYNHNGGPCYRCLFP 237

Query:   240 TPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV 299
             TPPPT+ACQRC+DSGVLGVVPG+IGCLQALE IK+AS VGEPLS RMLLFDALSAR+RIV
Sbjct:   238 TPPPTSACQRCSDSGVLGVVPGVIGCLQALETIKLASLVGEPLSERMLLFDALSARMRIV 297

Query:   300 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPL 335
             KIRGRSSQC  CG+NS+F +  F++FDYE FTQ PL
Sbjct:   298 KIRGRSSQCTVCGDNSSFNKQTFKDFDYEDFTQFPL 333

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=ISS

UNIPROTKB|E1C3M4 MOCS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 147/266 (55%), Positives = 185/266 (69%)

Query:    58 PSSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV 117
             P       LSP  I RYSR L+LP  GV GQ  L +SS+LV+G GGLG P   YLAA GV
Sbjct:    56 PPLPAQAALSPADILRYSRQLVLPELGVRGQLLLARSSVLVVGCGGLGCPLAQYLAAAGV 115

Query:   118 GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNA 177
             GRLG+VDHDVVE +N+HRQV+H E   G  K  SAAA  R +NSTV  + +  AL   +A
Sbjct:   116 GRLGLVDHDVVETSNLHRQVLHGEARRGFPKAASAAAALRQLNSTVQYVPYCGALTPRSA 175

Query:   178 LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCL 237
             L+++ QY++V D +DN P+RY+++D CV+ GKPLVSG+AL LEGQL VYNY+GGPCYRCL
Sbjct:   176 LQLVQQYDVVADCSDNVPTRYLVNDACVLAGKPLVSGSALRLEGQLVVYNYHGGPCYRCL 235

Query:   238 FPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIR 297
             FP PPP      CAD GVLGVVPGI+GC+QALE +K+ S +G   +  ML+FDA   R R
Sbjct:   236 FPKPPPPETVTNCADGGVLGVVPGIMGCIQALEVLKIISGMGSSFNQFMLMFDAQEGRFR 295

Query:   298 IVKIRGRSSQCEACGENSTFT--QDH 321
              +K+R + S C  CG+N + T  QD+
Sbjct:   296 NIKLRPKKSDCAVCGDNPSVTCLQDY 321

GO:0005524 "ATP binding" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0018192 "enzyme active site formation via L-cysteine persulfide" evidence=IEA

GO:0034227 "tRNA thio-modification" evidence=IEA

GO:0042292 "URM1 activating enzyme activity" evidence=IEA

UNIPROTKB|A5GFZ6 MOCS3 "Adenylyltransferase and sulfurtransferase MOCS3" [Sus scrofa (taxid:9823)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 151/318 (47%), Positives = 213/318 (66%)

Query:    16 EIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYS 75
             E+  L+A  +  +  +S+L+ +L    +++ +++ +   S  P  A    LS D I RYS
Sbjct:     6 EVLALQAEVARREEELSSLKHRLAAALLAEQESERLLPVSPLPPKAA---LSQDEILRYS 62

Query:    76 RHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR 135
             R L+LP  GV+GQ  L  +S+L++G GGLG P   YLAA GVGRLG+VD+DVVE++N+ R
Sbjct:    63 RQLVLPELGVQGQLRLATASVLIVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEVSNLAR 122

Query:   136 QVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 195
             QV+H E   GQ+KV SAAA+ R +NS V  + + +AL  + AL+++ +Y++V D +DN P
Sbjct:   123 QVLHGEALAGQAKVFSAAASLRRLNSAVECVPYAQALTPATALDLVRRYDVVADCSDNVP 182

Query:   196 SRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGV 255
             +RY+++D CV+ G+PLVS +AL  EGQ+TVY+Y GGPCYRC+FP PPP      CAD GV
Sbjct:   183 TRYLVNDACVLAGRPLVSASALRFEGQITVYHYGGGPCYRCVFPQPPPAETVTNCADGGV 242

Query:   256 LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENS 315
             LGVV G++GCLQALE +K+A+ +G   SG +LLFDAL    R +++R R   C ACGE  
Sbjct:   243 LGVVTGVLGCLQALEVLKIAAGLGPSYSGSLLLFDALRGLFRRIQLRRRRPDCAACGERP 302

Query:   316 TFTQDHFRNFDYEKFTQS 333
             T T+      DYE F  S
Sbjct:   303 TVTELQ----DYEGFCGS 316

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0034227 "tRNA thio-modification" evidence=ISS

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0042292 "URM1 activating enzyme activity" evidence=ISS

GO:0016783 "sulfurtransferase activity" evidence=ISS

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=ISS

GO:0018192 "enzyme active site formation via L-cysteine persulfide" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O95396 MOCS3 "Adenylyltransferase and sulfurtransferase MOCS3" [Homo sapiens (taxid:9606)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 150/320 (46%), Positives = 210/320 (65%)

Query:    16 EIETLKAAKSDIDYRISALEAQLRDTTVSQ--PQTDTVSNGSYRPSSAVDYGLSPDMIYR 73
             E+  L+A  +  +  +++L+ +L    +++  PQ + +   S  P  A    LS D I R
Sbjct:     6 EVLALQAEVAQREEELNSLKQKLASALLAEQEPQPERLVPVSPLPPKAA---LSRDEILR 62

Query:    74 YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133
             YSR L+LP  GV GQ  L  + +L++G GGLG P   YLAA GVGRLG+VD+DVVE++N+
Sbjct:    63 YSRQLVLPELGVHGQLRLGTACVLIVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEMSNL 122

Query:   134 HRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 193
              RQV+H E   GQ+K  SAAA+ R +NS V  + + +AL  + AL+++ +Y++V D +DN
Sbjct:   123 ARQVLHGEALAGQAKAFSAAASLRRLNSAVECVPYTQALTPATALDLVRRYDVVADCSDN 182

Query:   194 APSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADS 253
              P+RY+++D CV+ G+PLVS +AL  EGQ+TVY+Y+GGPCYRC+FP PPP      CAD 
Sbjct:   183 VPTRYLVNDACVLAGRPLVSASALRFEGQITVYHYDGGPCYRCIFPQPPPAETVTNCADG 242

Query:   254 GVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGE 313
             GVLGVV G++GCLQALE +K+A+ +G   SG +LLFDAL    R +++R R   C ACGE
Sbjct:   243 GVLGVVTGVLGCLQALEVLKIAAGLGPSYSGSLLLFDALRGHFRSIRLRSRRLDCAACGE 302

Query:   314 NSTFTQDHFRNFDYEKFTQS 333
               T T       DYE F  S
Sbjct:   303 RPTVTD----LLDYEAFCGS 318

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0018192 "enzyme active site formation via L-cysteine persulfide" evidence=IDA

GO:0016783 "sulfurtransferase activity" evidence=IDA;TAS

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IMP

GO:0042292 "URM1 activating enzyme activity" evidence=IDA

GO:0016779 "nucleotidyltransferase activity" evidence=IDA

GO:0002098 "tRNA wobble uridine modification" evidence=IDA

GO:0034227 "tRNA thio-modification" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0032324 "molybdopterin cofactor biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|A1A4L8 MOCS3 "Adenylyltransferase and sulfurtransferase MOCS3" [Bos taurus (taxid:9913)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 153/319 (47%), Positives = 207/319 (64%)

Query:    16 EIETLKAAKSDIDYRISALEAQLRDT-TVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRY 74
             E+  L+A  +  +  +S+L+ +L    +  Q    +V      P +A    LS + I RY
Sbjct:     6 EVLALQAEVAQREEELSSLKQRLAAALSTGQESARSVPVSPLPPRAA----LSREEIRRY 61

Query:    75 SRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH 134
             SR L+LP  G++GQ  L  +++LV+G GGLG P   YLAA GVGRLG+VD+DVVE +N+ 
Sbjct:    62 SRQLVLPELGMQGQLRLAAAAVLVVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEASNLA 121

Query:   135 RQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 194
             RQV+H E   GQ+KV SAAA  R +NS V  + + +AL  + AL+++ +Y++V D +DNA
Sbjct:   122 RQVLHGEALAGQAKVFSAAAALRRLNSAVECVPYAQALTPATALDLVRRYDVVADCSDNA 181

Query:   195 PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSG 254
             P+RY++SD CV+ G+PLVS +AL  EGQLTVY+Y GGPCYRC+FP PPP      CAD G
Sbjct:   182 PTRYLVSDACVLAGRPLVSASALRFEGQLTVYHYGGGPCYRCVFPRPPPAETVTSCADGG 241

Query:   255 VLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGEN 314
             VLG V G++GCLQALE +K A+ +G   SGR+LLFDAL    R +++R R   C ACGE 
Sbjct:   242 VLGAVTGVLGCLQALEVLKTAAGLGPSYSGRLLLFDALRGDFRCIRLRRRRPDCAACGER 301

Query:   315 STFTQDHFRNFDYEKFTQS 333
              T T       DYE F  S
Sbjct:   302 PTVTDLQ----DYESFCGS 316

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0034227 "tRNA thio-modification" evidence=ISS

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0042292 "URM1 activating enzyme activity" evidence=ISS

GO:0016783 "sulfurtransferase activity" evidence=ISS

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=ISS

GO:0018192 "enzyme active site formation via L-cysteine persulfide" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q58E95 mocs3 "Adenylyltransferase and sulfurtransferase MOCS3" [Xenopus laevis (taxid:8355)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 142/257 (55%), Positives = 185/257 (71%)

Query:    67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
             +PD++ RYSR L+LP  GV+GQ  L K+S+LVIG GGLG P   YLAA G+GRLG++D+D
Sbjct:    51 NPDIL-RYSRQLVLPDLGVQGQLKLSKASVLVIGCGGLGCPVAQYLAASGIGRLGLLDYD 109

Query:   127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEI 186
             VVE++N+HRQV+H E  +G SK  S A T R +NS V  + +  +L   NAL+I+ QY+I
Sbjct:   110 VVEMSNLHRQVLHGENRLGMSKSVSVAKTLRKLNSAVVYLPYHISLNPENALQIIQQYDI 169

Query:   187 VVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTA 246
             + D +DN P+RY+++D CV+ GKPLVS +AL  EGQLTVYNY+ GPCYRCLFP PPP+  
Sbjct:   170 IADCSDNVPTRYLVNDTCVLAGKPLVSASALRWEGQLTVYNYHQGPCYRCLFPKPPPSET 229

Query:   247 CQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSS 306
                CAD GVLG+VPGIIG LQALE +K+AS +    SG +L+FDAL  R R +KIRG+ +
Sbjct:   230 VTNCADGGVLGIVPGIIGSLQALEVLKIASGMAPSYSGVLLMFDALEGRFRNIKIRGKKN 289

Query:   307 QCEACGENS--TFTQDH 321
              C AC   S     QD+
Sbjct:   290 DCAACSNPSETAILQDY 306

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0016783 "sulfurtransferase activity" evidence=ISS

GO:0018192 "enzyme active site formation via L-cysteine persulfide" evidence=ISS

GO:0034227 "tRNA thio-modification" evidence=ISS

GO:0042292 "URM1 activating enzyme activity" evidence=ISS

UNIPROTKB|E2R7K8 MOCS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 149/318 (46%), Positives = 208/318 (65%)

Query:    16 EIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYS 75
             E+  L+A  +  +  +S+L+ +L    +++   +     S  P  A    LS + I RYS
Sbjct:    46 EVLALQAEVARREEELSSLKQRLAAALLAEQAPERRVPVSPLPPKAA---LSREEILRYS 102

Query:    76 RHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR 135
             R L+LP  GV GQ  L  +S+LV+G GGLG P   YLAA GVGRLG+VD+DVVE++N+ R
Sbjct:   103 RQLVLPELGVHGQLRLAAASVLVVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEMSNLAR 162

Query:   136 QVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 195
             QV+H E   GQ+K  SAAA+ R +NS V  + + +AL  + AL+++ +Y++V D +DN P
Sbjct:   163 QVLHGEALAGQAKAFSAAASLRRLNSAVECVPYAQALTPATALDLVRRYDVVADCSDNVP 222

Query:   196 SRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGV 255
             +RY+++D CV+ G+PLVS +AL  EGQ+TVY+Y+GGPCYRC+FP PPP      CAD GV
Sbjct:   223 TRYLVNDACVLAGRPLVSASALRFEGQITVYHYDGGPCYRCVFPQPPPAETVTNCADGGV 282

Query:   256 LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENS 315
             LGVV G++GCLQALE +KVA+ +G   S  +L+FDAL  + R +++R R   C ACGE  
Sbjct:   283 LGVVTGVLGCLQALEVLKVAAGLGPSYSRSLLIFDALRGQFRCIQLRSRRLDCAACGERP 342

Query:   316 TFTQDHFRNFDYEKFTQS 333
             T T       DYE F  S
Sbjct:   343 TVTALQ----DYEAFCGS 356

GO:0042292 "URM1 activating enzyme activity" evidence=IEA

GO:0034227 "tRNA thio-modification" evidence=IEA

GO:0018192 "enzyme active site formation via L-cysteine persulfide" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1916622 Mocs3 "molybdenum cofactor synthesis 3" [Mus musculus (taxid:10090)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 147/318 (46%), Positives = 201/318 (63%)

Query:    16 EIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYS 75
             ++  L+A  +  +  +++L+ +L     ++P+ +        P  A    LS D I RYS
Sbjct:     6 DVAALQAEITRREEELASLKRRLAAALTAEPEPERPLRVP-PPPLAPRAALSRDEILRYS 64

Query:    76 RHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR 135
             R LLLP  GV GQ  L  +++LV+G GGLG P   YLAA GVGRLG+VDHDVVE +N+ R
Sbjct:    65 RQLLLPELGVRGQLRLAAAAVLVVGCGGLGCPLAQYLAAAGVGRLGLVDHDVVETSNLAR 124

Query:   136 QVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 195
             QV+H E   G+SK +SAAA  R +NS V  + +  AL    AL+++  Y++V D  DN P
Sbjct:   125 QVLHGEAQAGESKARSAAAALRRLNSAVECVAYPRALAEDWALDLVRGYDVVADCCDNVP 184

Query:   196 SRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGV 255
             +RY+++D CV+ G+PLVS +AL  EGQ+TVY+++GGPCYRC+FP PPP      CAD GV
Sbjct:   185 TRYLVNDACVLAGRPLVSASALRFEGQMTVYHHDGGPCYRCVFPRPPPPETVTNCADGGV 244

Query:   256 LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENS 315
             LG VPG++GC QALE +K+A+ +G   SG MLLFD L    R +++R R   C  CG+  
Sbjct:   245 LGAVPGVLGCAQALEVLKIAAGLGSSYSGSMLLFDGLGGHFRRIRLRRRRPDCVVCGQQP 304

Query:   316 TFTQDHFRNFDYEKFTQS 333
             T T    R  DYE F  S
Sbjct:   305 TVT----RLQDYEAFCGS 318

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=ISO

GO:0016783 "sulfurtransferase activity" evidence=ISO

GO:0018192 "enzyme active site formation via L-cysteine persulfide" evidence=ISO

GO:0034227 "tRNA thio-modification" evidence=ISO

GO:0042292 "URM1 activating enzyme activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B4NXF7 GE18783 "Adenylyltransferase and sulfurtransferase MOCS3" [Drosophila yakuba (taxid:7245)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 152/330 (46%), Positives = 203/330 (61%)

Query:     1 METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSS 60
             ME+   S + +R+  EI  L+AA +  +  +  LEA +     ++ Q   V N    P  
Sbjct:     2 MESEVDS-EQSRLKREIAELRAALNRKEQCLRELEASVSSDASAEEQV--VGNALESPGR 58

Query:    61 AVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRL 120
             AV   L+ D I RYSR L+LP FGV+GQ  L  SS+L++G GGLG PA  YLAA G GRL
Sbjct:    59 AVHTKLTNDDIARYSRQLILPDFGVQGQLKLKNSSVLIVGLGGLGCPAAQYLAAAGCGRL 118

Query:   121 GIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEI 180
             G++D+D VE +N HRQ++H+E   G SK +SA      +N    I  H   L + NAL I
Sbjct:   119 GLIDYDEVERSNFHRQILHSESRCGMSKAESARIALLELNPHCEIHCHSRLLYSQNALHI 178

Query:   181 LSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPT 240
             +  Y++V+D +DN P+RY++SD CV+L KPLVSG+AL ++GQLTVYNY  GPCYRC++P 
Sbjct:   179 IRGYDVVLDCSDNVPTRYLLSDACVMLRKPLVSGSALKMDGQLTVYNYGNGPCYRCIYPV 238

Query:   241 PPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK 300
             PPP  A   C D GVLG V G IG +QALEAIKV   +G+ L+GR+L+FD  S   R ++
Sbjct:   239 PPPPEAVTNCGDGGVLGAVTGTIGAMQALEAIKVIVGLGDVLAGRLLIFDGSSGLFRNIR 298

Query:   301 IRGRSSQCEACGENSTFTQDHFRNFDYEKF 330
             IR +   C  C      T+      DYE F
Sbjct:   299 IRSKRPNCHVCSAQPLITE----LIDYEMF 324

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=ISS

RGD|1307044 Mocs3 "molybdenum cofactor synthesis 3" [Rattus norvegicus (taxid:10116)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 150/319 (47%), Positives = 202/319 (63%)

Query:    18 ETLKAAKSDIDYR---ISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRY 74
             E + A + +I  R   +++L+ +L      +P+ +        PS A    LS D I RY
Sbjct:     5 EDVAALQDEIARREEELASLKQRLAAALAVEPEPERPIPVMPLPSRAA---LSRDEILRY 61

Query:    75 SRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH 134
             SR LLLP  GV GQ  L  +S+LV+G GGLG P   YLAA GVGRLG+VDHDVVE +N+ 
Sbjct:    62 SRQLLLPELGVRGQLRLAAASVLVVGCGGLGCPLAQYLAAAGVGRLGLVDHDVVETSNLA 121

Query:   135 RQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 194
             RQV+H E   G +K  SAAA  R +NS V  + +  AL  + AL+++  Y++V D +DN 
Sbjct:   122 RQVLHGEAQAGHAKAWSAAAALRRLNSAVEYVPYARALSEAWALDLVRGYDVVADCSDNV 181

Query:   195 PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSG 254
             P+RY+++D CV+ G+PLVS +AL  EGQ+TVY+Y+ GPCYRC+FP PPP      CAD G
Sbjct:   182 PTRYLVNDACVLAGRPLVSASALRFEGQMTVYHYDDGPCYRCVFPRPPPAETVTNCADGG 241

Query:   255 VLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGEN 314
             VLGVVPG++GC+QALE +K+A+ +G   SG MLLFD L    R +++R R   C  CG+ 
Sbjct:   242 VLGVVPGVLGCVQALEVLKIAAGLGTTYSGSMLLFDGLGGHFRRIRLRRRRPDCVVCGQQ 301

Query:   315 STFTQDHFRNFDYEKFTQS 333
              T T    +N  YE F  S
Sbjct:   302 PTVTC--LKN--YEAFCGS 316

GO:0002098 "tRNA wobble uridine modification" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISO

GO:0016783 "sulfurtransferase activity" evidence=ISO

GO:0018192 "enzyme active site formation via L-cysteine persulfide" evidence=IEA;ISO

GO:0034227 "tRNA thio-modification" evidence=IEA;ISO

GO:0042292 "URM1 activating enzyme activity" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZNW0	MOCS3_ARATH	2, ., 8, ., 1, ., 1, 1	0.7559	0.9764	0.7155	yes	no
A3ACF3	MOCS3_ORYSJ	2, ., 8, ., 1, ., 1, 1	0.5613	0.8705	0.6651	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.n1	0.946
4th Layer	2.7.7.n4	LOW CONFIDENCE prediction!
3rd Layer	2.7.7	0.963
3rd Layer	2.8.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_I001118	hypothetical protein (460 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII0255	cysteine desulfurase/transaminase (EC-2.8.1.7) (452 aa)	•				•	•	•		0.991
	estExt_Genewise1_v1.C_LG_I1954	molybdopterin synthase (201 aa)	•				•	•	•		0.983
	eugene3.207560001	hypothetical protein (169 aa)	•		•	•		•	•		0.954
	gw1.XIV.1066.1	hypothetical protein (91 aa)					•	•	•		0.929
	fgenesh4_pg.C_scaffold_620000001	Predicted protein (168 aa)	•				•	•	•		0.920
	estExt_fgenesh4_pg.C_LG_XIX0639	molybdopterin synthase (101 aa)					•	•	•		0.904
	eugene3.00140447	molybderin biosynthesis protein (213 aa)	•						•		0.899
	gw1.V.3435.1	3-mercaptopyruvate sulfurtransferase (EC-2.8.1.1) (334 aa)	•				•	•	•		0.891
	estExt_fgenesh4_pg.C_LG_VII0743	SubName- Full=Putative uncharacterized protein; (372 aa)	•				•	•	•		0.875
	eugene3.51240001	annotation not avaliable (258 aa)	•		•			•	•		0.863

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	1e-124
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	1e-113
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	1e-105
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	6e-95
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	2e-91
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	2e-90
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	1e-76
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	7e-72
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	8e-66
pfam00899	134	pfam00899, ThiF, ThiF family	1e-54
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	2e-54
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	2e-46
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	7e-39
PRK12475	338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	1e-37
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	7e-32
pfam05237	77	pfam05237, MoeZ_MoeB, MoeZ/MoeB domain	8e-31
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	5e-24
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	7e-24
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	6e-21
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	3e-20
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	1e-18
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	2e-17
PRK08223	287	PRK08223, PRK08223, hypothetical protein; Validate	5e-16
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	2e-14
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	2e-13
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	9e-13
TIGR02354	200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	9e-12
PRK14851	679	PRK14851, PRK14851, hypothetical protein; Provisio	3e-10
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	3e-09
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	4e-09
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	7e-09
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	8e-09
PRK14852	989	PRK14852, PRK14852, hypothetical protein; Provisio	2e-08
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	5e-06
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	6e-06
cd01486	307	cd01486, Apg7, Apg7 is an E1-like protein, that ac	0.001

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score =  355 bits (914), Expect = e-124
 Identities = 131/229 (57%), Positives = 168/229 (73%), Gaps = 1/229 (0%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
           RYSR +LLP  G EGQ  L  + +LV+GAGGLGSPA  YLAA GVG+LG+VD DVVEL+N
Sbjct: 1   RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSN 60

Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD 192
           + RQ++HTE  +GQ K ++AA   R+IN  V I  + E L   NA E+++ Y++V+D TD
Sbjct: 61  LQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTD 120

Query: 193 NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCAD 252
           N  +RY+I+D CV LGKPLVSGA LG EGQ+TV+    GPCYRCLFP PPP      CA+
Sbjct: 121 NFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPP-PGVPSCAE 179

Query: 253 SGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301
           +GVLG + G+IG LQALEA+K+   +GEPL+GR+LLFDALS   R +K+
Sbjct: 180 AGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score =  333 bits (856), Expect = e-113
 Identities = 131/273 (47%), Positives = 173/273 (63%), Gaps = 9/273 (3%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           L+ +   RYSRHL LP  G EGQ  LL++ +L+IGAGGLGSPA LYLAA GVG LGIVDH
Sbjct: 108 LTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDH 167

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           DVV+ +N+ RQ++HTE  +GQ KV SAA    ++N  V +   +E + + N   +L   +
Sbjct: 168 DVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVD 227

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN----YNGGPCYRCLFPTP 241
           +VVD  DN P+RY+++D CV LGKPLV GA    EGQ++V++        PCYRCLFP P
Sbjct: 228 VVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEP 287

Query: 242 PPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301
           PP      CA++GVLGV+PG+IG LQA EAIK+   +G+PL+GR+L FDAL+ R R +++
Sbjct: 288 PPPELAPSCAEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRELRL 347

Query: 302 RGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP 334
                 C  C     F        DY  F    
Sbjct: 348 P-PDPHCPVCAPGRPFPG----YIDYAAFCAGA 375

Length = 376

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score =  307 bits (788), Expect = e-105
 Identities = 103/244 (42%), Positives = 150/244 (61%), Gaps = 4/244 (1%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           LS + + RY+R ++L  F  +GQ  L  + +LV+G GGLG  A  YLAA GVG L +VD 
Sbjct: 5   LSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D V L+N+ RQV+H +  IGQ KV+SA A    IN  + I      L       +++ ++
Sbjct: 65  DTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDDDELAALIAGHD 124

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRCLFPTPPPT 244
           +V+D TDN  +R  ++  C    KPLVSGAA+ +EGQ+TV+ Y +  PCYRCL       
Sbjct: 125 LVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRLFGEN 184

Query: 245 TACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR 304
                C ++GV+  + G+IG LQA+EAIK+ +  GEPLSGR+LL+DA++ + R +K++ R
Sbjct: 185 ALT--CVEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLK-R 241

Query: 305 SSQC 308
              C
Sbjct: 242 DPGC 245

Length = 245

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score =  287 bits (735), Expect = 6e-95
 Identities = 123/237 (51%), Positives = 163/237 (68%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           LS D   RYSRHL+LP  G+EGQ  L  +S+L IG GGLGSP LLYLAA G+GR+GIVD 
Sbjct: 11  LSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           DVV+ +N+ RQVIH   ++G+ K++SA      IN    +  +   L + NAL+IL+ Y+
Sbjct: 71  DVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYD 130

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 245
           +VVD TDN P+RY+++D CV+L KP V G+    EGQ TV+NY GGP YR L+P PPP  
Sbjct: 131 VVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPG 190

Query: 246 ACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIR 302
               CA+ GVLG++PGIIG +QA E IK+    G  LSGR+LL++AL  + R +K+R
Sbjct: 191 MVPSCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLR 247

Length = 390

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score =  278 bits (712), Expect = 2e-91
 Identities = 116/242 (47%), Positives = 161/242 (66%), Gaps = 4/242 (1%)

Query: 65  GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD 124
            L+ D + RYSRHL++P  GV+GQ  L  + +LVIGAGGLGSP LLYLAA GVG LGIV+
Sbjct: 14  ELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVE 73

Query: 125 HDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQY 184
            DVV+ +N+ RQVIH +  +G+SK +SA  +   IN  V++  H   L  SNA+E+ SQY
Sbjct: 74  FDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQY 133

Query: 185 EIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY---NYNG-GPCYRCLFPT 240
           ++++D TDN  +RY+++D  V+ GKP V G+    EGQ +V+     +G G  YR L+P 
Sbjct: 134 DLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPE 193

Query: 241 PPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK 300
           PPP      CA+ GVLGV+   IG +   EAIK+ + +GEPL GR++++DAL    R +K
Sbjct: 194 PPPPGMVPSCAEGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIK 253

Query: 301 IR 302
           IR
Sbjct: 254 IR 255

Length = 392

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score =  270 bits (693), Expect = 2e-90
 Identities = 127/252 (50%), Positives = 167/252 (66%), Gaps = 4/252 (1%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           LS + I RYSR +LLP  G EGQ  L  S +LV+GAGGLGSPA  YLA  GVG+L IVD 
Sbjct: 3   LSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDF 62

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D VEL+N+ RQ + TE  +G+ K + AA   R +N  V ++ + E L   NA E+++Q++
Sbjct: 63  DTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFD 122

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRCLFPTPPPT 244
           +V+D TDN  +RY+I+D CV LG PLV G A+G EGQ+TV    +  PCYRCLFP  PP 
Sbjct: 123 VVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPP 182

Query: 245 -TACQRCADSGVLGVVPGIIGCLQALEAIKVASAVG-EPLSGRMLLFDALSA-RIRIVKI 301
                 C ++GVLG + G++G LQALEAIK+ + +G EPL GR+LL+DAL   R R +K+
Sbjct: 183 GLVPTSCDEAGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLKL 242

Query: 302 RGRSSQCEACGE 313
           R R   C  CG 
Sbjct: 243 RRRPISCPVCGV 254

Length = 254

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score =  233 bits (597), Expect = 1e-76
 Identities = 101/202 (50%), Positives = 135/202 (66%), Gaps = 3/202 (1%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
           RY+R LLLP  G EGQ  LL S +L+IGAGGLGSPA LYLA  GVG + IVD D V+L+N
Sbjct: 1   RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSN 60

Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD 192
           + RQ++ TE  +G+ KV+ AA   R +NS + +   +E +   N   +++  ++V+D TD
Sbjct: 61  LQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTD 120

Query: 193 NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNG-GPCYRCLFPTPPPTTACQRCA 251
           N  +RY+I+D CV LG PL+S A +G  GQL V++  G GPC RCLFP    T     CA
Sbjct: 121 NFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIADTGP--SCA 178

Query: 252 DSGVLGVVPGIIGCLQALEAIK 273
            +GV+G V G+IG LQALEA+K
Sbjct: 179 TAGVIGPVVGVIGSLQALEALK 200

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score =  226 bits (578), Expect = 7e-72
 Identities = 97/234 (41%), Positives = 143/234 (61%)

Query: 70  MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129
            I RY R ++L   G +GQ +L  + + VIGAGGLGSPALLYLA  GVG + I+D D V+
Sbjct: 5   DIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVD 64

Query: 130 LNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVD 189
           L+N+HRQVIH+   +GQ K +SA     ++N  V +      L  SNAL+ L   ++++D
Sbjct: 65  LSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILD 124

Query: 190 ATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQR 249
            +DN  +R++ S     LG P V  + LG + QL+V++   GP Y  LFPTPPP  +   
Sbjct: 125 GSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPS 184

Query: 250 CADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG 303
           C+ +GVLG V G++G   A+EA+K+ + VG PL G++  +D+L      + + G
Sbjct: 185 CSQAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVVG 238

Length = 355

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score =  207 bits (528), Expect = 8e-66
 Identities = 99/243 (40%), Positives = 148/243 (60%), Gaps = 10/243 (4%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
           RY+R ++L  F  +GQ  L  S +L++G GGLG  A  YLAA GVG L ++D D V L+N
Sbjct: 4   RYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSN 63

Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD 192
           + RQV+H++  IGQ KV+SA      IN  + I      L  +    ++++++IVVD TD
Sbjct: 64  LQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTD 123

Query: 193 NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG-PCYRC---LFPTPPPTTACQ 248
           N   R  ++  C     PLVSGAA+ +EGQ++V+ Y  G PCYRC   LF     +    
Sbjct: 124 NVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSRLFGENALS---- 179

Query: 249 RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 308
            C ++GV+  V G++G LQA+EAIKV + +G+PLSG++L+ DA++   R +K+  ++  C
Sbjct: 180 -CVEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLP-KNPTC 237

Query: 309 EAC 311
             C
Sbjct: 238 PVC 240

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score =  175 bits (445), Expect = 1e-54
 Identities = 65/134 (48%), Positives = 89/134 (66%)

Query: 93  KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA 152
            S +LV+GAGGLGSPA  YLA  GVG+L +VD D VEL+N++RQ++ TE  IG+ K + A
Sbjct: 1   SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVA 60

Query: 153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212
               R+IN  V +  + E L   N  E+L   ++VVDA DN  +RY+++D CV  G PL+
Sbjct: 61  KERLRAINPDVEVEAYPERLTPENLEELLKGVDLVVDALDNFAARYLLNDACVKRGIPLI 120

Query: 213 SGAALGLEGQLTVY 226
           S  ALG +GQ+TV 
Sbjct: 121 SAGALGFDGQVTVI 134

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score =  182 bits (463), Expect = 2e-54
 Identities = 88/232 (37%), Positives = 138/232 (59%), Gaps = 3/232 (1%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
           R +R L LP FG+E Q  L  + +LVIGAGGLG PA+  LA+ GVG + ++D D V+++N
Sbjct: 21  RTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSN 80

Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD 192
           +HRQ++     +G+ KV+ AA   + I   + +   RE L   NA+E+L+  ++V+D +D
Sbjct: 81  IHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSD 140

Query: 193 NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN---YNGGPCYRCLFPTPPPTTACQR 249
           +  ++++++D   + G PLV G  L   G+L V+N    + G   R LFP  P   +   
Sbjct: 141 SFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPD 200

Query: 250 CADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301
           CA +GVLG    +IG L A EAIK  + +G+   G +L +DAL+A  R  ++
Sbjct: 201 CATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFRV 252

Length = 370

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score =  157 bits (398), Expect = 2e-46
 Identities = 85/237 (35%), Positives = 127/237 (53%), Gaps = 8/237 (3%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           LS   + RY R +++  FGVEGQ  L K+ + V+G GGLGSP   YLAA GVGR+ ++D 
Sbjct: 2   LSERELERYDRQIMI--FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59

Query: 126 DVVELNNMHRQVIHTEPYIGQ-SKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQY 184
              EL+N++RQ++H E  +G+  K  SA       NS + I      L   N  E+L   
Sbjct: 60  QTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGV 119

Query: 185 EIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
           +++VD  DN  +RY++ D     G PLV GA  G  GQ+T          R +FP     
Sbjct: 120 DVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPKVK-- 177

Query: 245 TACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301
              ++     +LG   G+IG +QA+E IK+ +  GEPL  ++L+ D  +    +V++
Sbjct: 178 ---KKKGKFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231

Length = 231

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score =  140 bits (355), Expect = 7e-39
 Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 5/251 (1%)

Query: 70  MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129
           M  RYSR  L    G EGQ  L +  +L+IGAG LG+     L   GVG++ IVD D VE
Sbjct: 1   MNERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVE 60

Query: 130 LNNMHRQVIHTEPYIGQSKVKSAAATCR--SINSTVHIIEHREALRTSNALEILSQYEIV 187
            +N+ RQ ++TE  +  +  K+ AA  R   INS V +    + +      E+++  +++
Sbjct: 61  WSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLI 120

Query: 188 VDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 247
           +DATDN  +R++++D     G P + GA +G  G          PC RCL  + P     
Sbjct: 121 IDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQSIPLGG-- 178

Query: 248 QRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG-RSS 306
             C  +G++     I+   Q  EA+K+     E L   ++ FD        + ++  +  
Sbjct: 179 ATCDTAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKD 238

Query: 307 QCEACGENSTF 317
            C +CGE + +
Sbjct: 239 NCPSCGEKALY 249

Length = 339

>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

 Score =  136 bits (345), Expect = 1e-37
 Identities = 78/251 (31%), Positives = 120/251 (47%), Gaps = 5/251 (1%)

Query: 70  MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129
           M  RYSR +L    G EGQ  + +  +L++GAG LG+     L   G+G+L I D D VE
Sbjct: 1   MQERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE 60

Query: 130 LNNMHRQVIHTEPYIGQSKVKSAAAT--CRSINSTVHIIEHREALRTSNALEILSQYEIV 187
            +N+ RQ ++TE    Q K K+ AA    R INS V I+     +      E++ + +++
Sbjct: 61  WSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLI 120

Query: 188 VDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 247
           +DATDN  +R +I+D       P + G  +G  G          PC RCL    P   A 
Sbjct: 121 IDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLMEHVPVGGAT 180

Query: 248 QRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI-RGRSS 306
             C  +G++     I+   Q  EA+K+     E L    L FD  + +   +K+ + +  
Sbjct: 181 --CDTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNKQKKD 238

Query: 307 QCEACGENSTF 317
            C +CG   T+
Sbjct: 239 TCPSCGLTRTY 249

Length = 338

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score =  116 bits (292), Expect = 7e-32
 Identities = 46/135 (34%), Positives = 74/135 (54%)

Query: 96  ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT 155
           +L++G GGLGS   L LA  GVG++ ++D D VEL+N++RQ +  +  IG+ K + AA  
Sbjct: 2   VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARR 61

Query: 156 CRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215
              +N  V++    E +   N  + L   ++V+DA DN   R  ++  C  LG P++   
Sbjct: 62  LNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAG 121

Query: 216 ALGLEGQLTVYNYNG 230
            LGL G + V +   
Sbjct: 122 GLGLGGDIQVIDIGS 136

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|113988 pfam05237, MoeZ_MoeB, MoeZ/MoeB domain

 Score =  111 bits (279), Expect = 8e-31
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 233 CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDAL 292
           CYRCLFP PP   +   CA +GVLG V G IG LQALEAIK+ + +GEPLSGR+LLFDA 
Sbjct: 1   CYRCLFPEPPG--SVPTCATAGVLGPVVGTIGSLQALEAIKLLTGIGEPLSGRLLLFDAW 58

Query: 293 SARIRIVKIRGRSSQCEACG 312
           +   R +++R R   C  CG
Sbjct: 59  TMHFRKIRLR-RDPDCPVCG 77

This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. Length = 77

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 98.1 bits (245), Expect = 5e-24
 Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 3/137 (2%)

Query: 83  FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEP 142
           +G EG   L  + + V+G GG+GS A   LA  GVG+L ++D DVV ++N++RQ+     
Sbjct: 1   YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLS 60

Query: 143 YIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMIS 201
            +G+ KV+  A   R IN    +    E L   N+ ++L    + VVDA D+  ++  + 
Sbjct: 61  TVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALI 120

Query: 202 DCCVVLGKPLVS--GAA 216
             C     P++S  GA 
Sbjct: 121 AYCRKRKIPVISSMGAG 137

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 96.8 bits (242), Expect = 7e-24
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 10/133 (7%)

Query: 91  LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY----IGQ 146
           L K+ + + GAGGLGS   + LA  GVG L +VD DVVE +N++RQ      Y    IG 
Sbjct: 26  LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ-----YFISQIGM 80

Query: 147 SKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV- 205
            KV++       IN  V I  H E +   N  E+    +IVV+A DNA ++ M+ +  + 
Sbjct: 81  PKVEALKENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLE 140

Query: 206 VLGKPLVSGAALG 218
             GK LV+ + + 
Sbjct: 141 HPGKKLVAASGMA 153

Length = 212

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 87.8 bits (218), Expect = 6e-21
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            + + GAGGLGS   + LA  GVG L +VD DVVE +N++RQ       IG+ KV++   
Sbjct: 1   KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLS-QIGEPKVEALKE 59

Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV-VLGKPLVS 213
             R IN  V I      +  +N   +    +IVV+A DNA ++ M+++  +    KP+V 
Sbjct: 60  NLREINPFVKIEAINIKIDENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVC 119

Query: 214 GAALG 218
            + + 
Sbjct: 120 ASGMA 124

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score = 89.4 bits (222), Expect = 3e-20
 Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 2/151 (1%)

Query: 96  ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT 155
           +LV+GAGG+G   L  L   G G + I+D D ++L+N++RQ +  + ++G+SK + A   
Sbjct: 2   VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEA 61

Query: 156 CRSINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214
             S N  V I+ +   ++     +E   Q+++V +A DN  +R  ++  C+    PL+  
Sbjct: 62  VLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIES 121

Query: 215 AALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 245
              G  GQ+ V       CY C  P   P T
Sbjct: 122 GTTGFLGQVQVIKKGKTECYECQ-PKETPKT 151

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 83.0 bits (205), Expect = 1e-18
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +L++GAGG+G   L  LA  G G++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 1   KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE 60

Query: 155 TCRSINSTVHIIEHREALRTSN--ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212
                N    ++ ++  +            Q+ I+V+A DN  +R  ++   + L  PL+
Sbjct: 61  AVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLI 120

Query: 213 SGAALGLEGQLTVYNYNGGPCYRC-LFPTPPPTTAC 247
                G +G   V       C  C L+P       C
Sbjct: 121 ESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMC 156

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 70  MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129
              R+     L  +G +G   L ++ + V+G GG+GS A+  LA  G+GR+ ++D D V 
Sbjct: 9   YRQRFGGIARL--YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVC 66

Query: 130 LNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQ-YEIVV 188
           + N +RQ+      IG+ KV+      + IN    +    + +   N  ++LS+ ++ V+
Sbjct: 67  VTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVI 126

Query: 189 DATDNAPSRYMISDCCVVLGKPLVS--GAA 216
           DA D+  ++  +   C     P++S  GA 
Sbjct: 127 DAIDSVRAKVALIAYCRRNKIPVISSMGAG 156

Length = 263

>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 2/148 (1%)

Query: 85  VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144
              Q  L  S + + G GG+G   LL LA  G+G+  I D DV EL N +RQ       +
Sbjct: 19  PTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL 78

Query: 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD--NAPSRYMISD 202
           G+ K +  A   R IN  + I    E +   NA   L   ++ VD  D     +R ++  
Sbjct: 79  GRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFA 138

Query: 203 CCVVLGKPLVSGAALGLEGQLTVYNYNG 230
            C   G P ++ A LG+   L V++  G
Sbjct: 139 ACQQRGIPALTAAPLGMGTALLVFDPGG 166

Length = 287

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 9/164 (5%)

Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            ILVIGAGGLG   L  LA  G   + ++D D ++++N++RQ +  E  IG+ K + AA 
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAK 60

Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLG------ 208
                   V++  H   ++  +  E   Q+ I++   D+  +R  I+   V L       
Sbjct: 61  FVNDRVPGVNVTPHFGKIQDKD-EEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPE 119

Query: 209 --KPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
              PL+ G   G +G   V       C  C     PP      C
Sbjct: 120 SIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLC 163

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 95  SILVIGAGGLG-----SPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKV 149
            + ++GAG +G     + AL+ +     G + + D D +E +N++RQ +     +G+ K 
Sbjct: 1   KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKS 60

Query: 150 KSAAATCRSINSTVHIIEH--REALRTSNAL--EILSQYEIVVDATDNAPSRYMISDCCV 205
           + AAA  +++N  + I     R    T +    E   + + V +A DN  +R  +   CV
Sbjct: 61  EVAAAAVKAMNPDLKITALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCV 120

Query: 206 VLGKPLVSGAALGLEGQLTVY 226
              KPL+    LG +G   V 
Sbjct: 121 YYRKPLLESGTLGTKGNTQVV 141

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 69.1 bits (169), Expect = 9e-13
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 9/152 (5%)

Query: 83  FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQV 137
           FG   Q  L   +I ++G G +G   L   A  GV     G + + D D++E +N++RQ 
Sbjct: 409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQF 468

Query: 138 IHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL--RTSNAL--EILSQYEIVVDATDN 193
           +    +IG+ K  +AA     IN  + I  H+  +   T      E   + ++V++A DN
Sbjct: 469 LFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDN 528

Query: 194 APSRYMISDCCVVLGKPLVSGAALGLEGQLTV 225
             +R  +   C+   KPL+    LG +G   V
Sbjct: 529 VEARRYVDSRCLAFLKPLLESGTLGTKGNTQV 560

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2

 Score = 63.0 bits (153), Expect = 9e-12
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 91  LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150
           L ++++ + G GGLGS   + LA  G+G+L +VD DVVE +N++RQ       +G+ K +
Sbjct: 19  LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKAS-QVGEPKTE 77

Query: 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKP 210
           +       IN    I  + E +   N  +     +IV +A DNA ++ M+ +  +   K 
Sbjct: 78  ALKENISEINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKD 137

Query: 211 LVSGAALGLEG 221
               AA GL G
Sbjct: 138 KYLIAASGLAG 148

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 200

>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 64  YGLSPDMIYR---YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRL 120
            G+S    YR   +SR++ L  F    Q  L ++ + + G GG+G   L+ +   G+GR 
Sbjct: 13  LGISSAAEYREAAFSRNIGL--FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRF 70

Query: 121 GIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEI 180
            I D D  E  N++RQ     P  G+ K+        SIN  + I      +   N    
Sbjct: 71  HIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDAF 130

Query: 181 LSQYEIVVDATD--NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNG 230
           L   ++V+D  D      R  + +     G P+++   LG    + V+   G
Sbjct: 131 LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQG 182

Length = 679

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 74  YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133
           Y R + L  +G+E Q  L  + IL+IG  GLG+     L   G+G L I+D   V   ++
Sbjct: 4   YDRQIRL--WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDL 61

Query: 134 HRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 193
             Q +     +GQ++ +++    R++N  V +    + +      E  SQ+++VV    +
Sbjct: 62  GAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISEKPE-EFFSQFDVVVATELS 120

Query: 194 APSRYMISDCCVVLGKPLVSGAALGLEG 221
                 I++ C  LG    +    GL G
Sbjct: 121 RAELVKINELCRKLGVKFYATGVHGLFG 148

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 14/160 (8%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL-- 130
           +Y R L L  +G  GQ+ L  + + ++ A   G+  L  L   G+G   IVD   V+   
Sbjct: 2   KYDRQLRL--WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEED 59

Query: 131 --NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVH---IIEHREALRTSNALEILSQYE 185
             NN     +     +G+S+ ++     + +N  V+   + E  EAL  ++     SQ+ 
Sbjct: 60  LGNNF---FLDAS-SLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDP-SFFSQFT 114

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV 225
           +V+       +   ++D       PL+   + GL G + +
Sbjct: 115 VVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRI 154

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 74  YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133
           Y R + L  +G E Q+ L  + +L+IGAG LG+     L   G+  + IVDH +V   ++
Sbjct: 2   YDRQIRL--WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDL 59

Query: 134 HRQVI--HTEPYIGQSKVKSAAATCRSINS--TVHIIEHREALRTSNALEILSQYEIVVD 189
                        G ++  ++    + +N    + I+E       SN  E L ++ +V+ 
Sbjct: 60  GSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIA 119

Query: 190 ATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223
             +N      ++D C     P +S A  GL G  
Sbjct: 120 TEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 94  SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAA 153
           + I V+G GG+GS A   LA  G+G + ++D D V + N +RQ+      +G +K +  A
Sbjct: 31  AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMA 90

Query: 154 ATCRSINSTVHIIEHREALRTSNALEILSQ-YEIVVDATDNA-PSRYMISDC 203
              R IN    +    + +   N  E +S  +  V+DA D+  P   +I+ C
Sbjct: 91  ERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYC 142

Length = 268

>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 74  YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133
           +SR+L L  +   GQ  LL+S + + G GG+G   L+ LA  G+G   + D D     N+
Sbjct: 315 FSRNLGLVDYA--GQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNL 372

Query: 134 HRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD- 192
           +RQ   +    G+ K+        S+N  + I    E +        L   +++VD  D 
Sbjct: 373 NRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDF 432

Query: 193 -NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLF----PTPP 242
                R  + +  + LG P+++   LG    L V+   GG  +   F     TPP
Sbjct: 433 FALDIRRRLFNRALELGIPVITAGPLGYSCALLVF-MPGGMNFDSYFGIDDDTPP 486

Length = 989

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 74  YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133
           YSR L +   G E    + KS++L+ G GGLG      L   GV  + + D +  +  ++
Sbjct: 7   YSRQLYV--LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDL 64

Query: 134 HRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 193
                 +E  +G+++ ++       +N  VH+             E L +++ VV    +
Sbjct: 65  SSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVPFNE----EFLDKFQCVVLTEMS 120

Query: 194 APSRYMISDCC 204
            P +  I+D C
Sbjct: 121 LPLQKEINDFC 131

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 14/165 (8%)

Query: 74  YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133
           YSR L +   G E    L KS++L+ G GGLG      L   GV  + + D      +++
Sbjct: 2   YSRQLYV--LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL 59

Query: 134 HRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 193
             Q    E  IG+++ +++ A    +N  V +      L T    + L ++++VV    +
Sbjct: 60  SSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGPLTT----DELLKFQVVVLTDAS 115

Query: 194 APSRYMISDCCVVLGKPLVSGAALGLEGQL--------TVYNYNG 230
              +  I++ C   G   +S    GL G +        TVY+ NG
Sbjct: 116 LEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDPNG 160

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 97  LVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT- 155
           L++GAG LG      L   GV  +  VD   V  +N  RQ + T       K K+ AA  
Sbjct: 3   LLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAE 62

Query: 156 -----CRSINST------------VHIIEHREALRTSNALEIL-SQYEIVVDATDNAPSR 197
                  SI++T            +   E    L+    LE L   ++++   TD+  SR
Sbjct: 63  RLKEIFPSIDATGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESR 122

Query: 198 YMISDCCVVLGKPLVSGAALG 218
           ++ +       K LV  AALG
Sbjct: 123 WLPTLLSAAKNK-LVINAALG 142

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	100.0
PRK07411	390	hypothetical protein; Validated	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK08223	287	hypothetical protein; Validated	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	100.0
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	100.0
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	100.0
PRK14852	989	hypothetical protein; Provisional	100.0
PRK14851	679	hypothetical protein; Provisional	100.0
PRK07877	722	hypothetical protein; Provisional	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	100.0
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	100.0
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	100.0
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	100.0
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	100.0
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	100.0
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	100.0
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	100.0
KOG2014	331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	100.0
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	100.0
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.97
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.96
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.96
PRK06153	393	hypothetical protein; Provisional	99.95
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	99.95
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.94
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.93
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.93
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	99.91
KOG2337	669	consensus Ubiquitin activating E1 enzyme-like prot	99.83
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	99.81
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.73
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	98.42
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.24
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.23
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.19
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.0
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.84
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.82
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.71
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.68
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.67
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.65
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.52
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.44
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.4
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.36
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.31
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.3
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.27
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.21
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.21
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.12
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.12
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.1
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.1
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.07
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.06
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.05
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.97
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.86
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.86
PRK10637	457	cysG siroheme synthase; Provisional	96.8
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.78
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.73
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.72
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.72
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.7
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.66
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.65
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.63
PLN00203	519	glutamyl-tRNA reductase	96.57
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.55
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.54
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.52
PRK04148	134	hypothetical protein; Provisional	96.42
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.37
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.32
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.29
PTZ00117	319	malate dehydrogenase; Provisional	96.28
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.28
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.26
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.26
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.25
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.18
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.16
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.15
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.14
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.12
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.09
PRK06197	306	short chain dehydrogenase; Provisional	96.05
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.04
PRK09496	453	trkA potassium transporter peripheral membrane com	96.04
PLN02602	350	lactate dehydrogenase	96.04
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.02
PRK08618	325	ornithine cyclodeaminase; Validated	96.0
PRK06141	314	ornithine cyclodeaminase; Validated	95.98
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.98
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.98
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.98
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.93
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.91
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.91
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.91
PLN02494	477	adenosylhomocysteinase	95.89
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.85
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.85
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.8
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.79
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	95.77
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.76
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.73
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.73
PTZ00325	321	malate dehydrogenase; Provisional	95.71
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.69
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.69
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.67
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.65
PRK07340	304	ornithine cyclodeaminase; Validated	95.6
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.59
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.55
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	95.54
PRK09242	257	tropinone reductase; Provisional	95.54
PRK07680	273	late competence protein ComER; Validated	95.49
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.48
PRK06223	307	malate dehydrogenase; Reviewed	95.47
PRK06932	314	glycerate dehydrogenase; Provisional	95.45
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	95.42
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.41
PLN02427	386	UDP-apiose/xylose synthase	95.38
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.34
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.33
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.33
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	95.32
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.32
PRK07062	265	short chain dehydrogenase; Provisional	95.31
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.31
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.3
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.28
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.26
PRK05875	276	short chain dehydrogenase; Provisional	95.26
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.24
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.24
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.23
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.23
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.21
PRK12480	330	D-lactate dehydrogenase; Provisional	95.19
PLN02240	352	UDP-glucose 4-epimerase	95.17
PRK14982	340	acyl-ACP reductase; Provisional	95.17
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.17
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.17
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.15
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.14
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.14
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.14
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.13
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.11
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.11
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.07
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.05
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.05
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.0
PRK08291	330	ectoine utilization protein EutC; Validated	94.98
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.98
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.96
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	94.96
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.94
PRK05854	313	short chain dehydrogenase; Provisional	94.92
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.92
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	94.91
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.9
PRK09496	453	trkA potassium transporter peripheral membrane com	94.9
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	94.89
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.89
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.88
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.87
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	94.86
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.85
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	94.82
PRK07831	262	short chain dehydrogenase; Provisional	94.81
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.81
PLN03209	576	translocon at the inner envelope of chloroplast su	94.8
TIGR00036	266	dapB dihydrodipicolinate reductase.	94.78
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.78
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.75
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.75
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.74
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.71
COG0281	432	SfcA Malic enzyme [Energy production and conversio	94.7
PRK08374	336	homoserine dehydrogenase; Provisional	94.68
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.67
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	94.64
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.64
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.64
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.6
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	94.57
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	94.56
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.56
PRK06270	341	homoserine dehydrogenase; Provisional	94.55
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	94.53
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.53
PRK06567	1028	putative bifunctional glutamate synthase subunit b	94.52
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.52
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	94.52
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	94.47
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.46
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.45
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	94.44
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	94.44
PLN02852	491	ferredoxin-NADP+ reductase	94.43
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	94.42
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.38
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.38
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.34
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.33
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	94.3
PRK07063	260	short chain dehydrogenase; Provisional	94.3
PRK07417	279	arogenate dehydrogenase; Reviewed	94.27
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.26
PRK07576	264	short chain dehydrogenase; Provisional	94.23
PRK13018	378	cell division protein FtsZ; Provisional	94.22
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	94.21
PLN00106	323	malate dehydrogenase	94.21
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.2
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.18
PRK13529	563	malate dehydrogenase; Provisional	94.18
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.17
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.14
PLN03139	386	formate dehydrogenase; Provisional	94.14
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	94.14
PRK09330	384	cell division protein FtsZ; Validated	94.13
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	94.1
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.1
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	94.09
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.06
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	94.06
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.05
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.04
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.02
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.97
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	93.95
PRK06949	258	short chain dehydrogenase; Provisional	93.94
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.92
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.91
PRK05866	293	short chain dehydrogenase; Provisional	93.9
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.89
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	93.85
PRK07574	385	formate dehydrogenase; Provisional	93.83
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.83
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.83
PRK06545	359	prephenate dehydrogenase; Validated	93.81
PTZ00188	506	adrenodoxin reductase; Provisional	93.79
PRK12862	763	malic enzyme; Reviewed	93.79
PLN02206	442	UDP-glucuronate decarboxylase	93.77
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	93.76
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	93.76
PLN02688	266	pyrroline-5-carboxylate reductase	93.76
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	93.72
PRK07478	254	short chain dehydrogenase; Provisional	93.68
PRK05872	296	short chain dehydrogenase; Provisional	93.66
PRK09186	256	flagellin modification protein A; Provisional	93.65
PRK06125	259	short chain dehydrogenase; Provisional	93.64
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.64
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.61
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.58
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.57
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.57
PRK08277	278	D-mannonate oxidoreductase; Provisional	93.57
PRK06194	287	hypothetical protein; Provisional	93.55
PRK13303	265	L-aspartate dehydrogenase; Provisional	93.54
PRK06138	252	short chain dehydrogenase; Provisional	93.52
PRK06198	260	short chain dehydrogenase; Provisional	93.52
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.51
PRK12939	250	short chain dehydrogenase; Provisional	93.51
PRK05225	487	ketol-acid reductoisomerase; Validated	93.45
PRK08818	370	prephenate dehydrogenase; Provisional	93.45
PRK08251	248	short chain dehydrogenase; Provisional	93.43
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	93.36
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.35
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.34
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	93.34
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	93.27
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.27
PRK08213	259	gluconate 5-dehydrogenase; Provisional	93.25
PRK10669	558	putative cation:proton antiport protein; Provision	93.24
PLN02780	320	ketoreductase/ oxidoreductase	93.23
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.21
PRK05442	326	malate dehydrogenase; Provisional	93.19
PLN02928	347	oxidoreductase family protein	93.18
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.18
PRK06139	330	short chain dehydrogenase; Provisional	93.16
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	93.14
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	93.11
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.1
PRK06181	263	short chain dehydrogenase; Provisional	93.09
PRK08339	263	short chain dehydrogenase; Provisional	93.09
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	93.08
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	93.06
PLN02572	442	UDP-sulfoquinovose synthase	93.05
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	93.05
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	93.04
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	93.04
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.03
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	93.03
PRK07035	252	short chain dehydrogenase; Provisional	92.99
PRK06436	303	glycerate dehydrogenase; Provisional	92.98
PRK12861	764	malic enzyme; Reviewed	92.98
PTZ00431	260	pyrroline carboxylate reductase; Provisional	92.94
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	92.9
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	92.89
PRK14031	444	glutamate dehydrogenase; Provisional	92.89
PRK15059	292	tartronate semialdehyde reductase; Provisional	92.84
PRK07814	263	short chain dehydrogenase; Provisional	92.84
PRK13984	604	putative oxidoreductase; Provisional	92.83
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.81
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.81
PRK06392	326	homoserine dehydrogenase; Provisional	92.8
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	92.79
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.79
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.75
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	92.73
PLN02214	342	cinnamoyl-CoA reductase	92.73
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	92.73
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.7
PRK12814	652	putative NADPH-dependent glutamate synthase small	92.69
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.69
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	92.68
PRK07774	250	short chain dehydrogenase; Provisional	92.68
PRK06914	280	short chain dehydrogenase; Provisional	92.68
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	92.68
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.66
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.64
PLN02166	436	dTDP-glucose 4,6-dehydratase	92.64
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	92.6
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	92.59
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.59
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	92.59
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.55
PLN02253	280	xanthoxin dehydrogenase	92.55
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	92.54
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.53
COG0300	265	DltE Short-chain dehydrogenases of various substra	92.53
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	92.53
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.53
PRK06046	326	alanine dehydrogenase; Validated	92.52
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	92.52
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.49
PRK05867	253	short chain dehydrogenase; Provisional	92.48
CHL00194	317	ycf39 Ycf39; Provisional	92.48
PLN02740	381	Alcohol dehydrogenase-like	92.46
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	92.42
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	92.42
PRK12829	264	short chain dehydrogenase; Provisional	92.42
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	92.37
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	92.37
PRK07326	237	short chain dehydrogenase; Provisional	92.35
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	92.34
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	92.33
PRK13243	333	glyoxylate reductase; Reviewed	92.31
PF11336	514	DUF3138: Protein of unknown function (DUF3138); In	92.3
PRK06124	256	gluconate 5-dehydrogenase; Provisional	92.28
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.28
PLN02653	340	GDP-mannose 4,6-dehydratase	92.23
PRK08589	272	short chain dehydrogenase; Validated	92.19
PRK10675	338	UDP-galactose-4-epimerase; Provisional	92.19
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.17
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	92.16
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.15
PTZ00317	559	NADP-dependent malic enzyme; Provisional	92.14
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.09
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	92.04
PRK06523	260	short chain dehydrogenase; Provisional	92.02
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	91.99
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	91.98
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.98
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	91.96
PRK06172	253	short chain dehydrogenase; Provisional	91.93
PRK07109	334	short chain dehydrogenase; Provisional	91.92
PRK12831	464	putative oxidoreductase; Provisional	91.9
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.89
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	91.88
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.84
PRK09564	444	coenzyme A disulfide reductase; Reviewed	91.82
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	91.78
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.75
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.74
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	91.73
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.71
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	91.7
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	91.68
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.67
PRK09072	263	short chain dehydrogenase; Provisional	91.66
PRK08655	437	prephenate dehydrogenase; Provisional	91.66
PRK07453	322	protochlorophyllide oxidoreductase; Validated	91.65
PLN02353	473	probable UDP-glucose 6-dehydrogenase	91.64
PRK12367	245	short chain dehydrogenase; Provisional	91.62
PRK06487	317	glycerate dehydrogenase; Provisional	91.59
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	91.49
PRK07890	258	short chain dehydrogenase; Provisional	91.49
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	91.48
PRK00811	283	spermidine synthase; Provisional	91.46
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	91.46
PRK10537	393	voltage-gated potassium channel; Provisional	91.44
PLN00016	378	RNA-binding protein; Provisional	91.41
PRK05086	312	malate dehydrogenase; Provisional	91.4
PRK06940	275	short chain dehydrogenase; Provisional	91.4
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	91.4
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	91.37
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	91.29
PRK05876	275	short chain dehydrogenase; Provisional	91.29
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	91.24
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	91.18
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	91.18
PLN00112	444	malate dehydrogenase (NADP); Provisional	91.16
PLN02712	667	arogenate dehydrogenase	91.12
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	91.11
PRK07806	248	short chain dehydrogenase; Provisional	91.09
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.07
PRK08264	238	short chain dehydrogenase; Validated	91.06
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.05
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	91.02
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.01
PRK06349	426	homoserine dehydrogenase; Provisional	91.0
PRK12744	257	short chain dehydrogenase; Provisional	90.96
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	90.92
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	90.82
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.81
PLN00198	338	anthocyanidin reductase; Provisional	90.8
PRK05855	582	short chain dehydrogenase; Validated	90.8
PRK06720	169	hypothetical protein; Provisional	90.79
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	90.76
PRK12937	245	short chain dehydrogenase; Provisional	90.74
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	90.68
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.67
PRK08085	254	gluconate 5-dehydrogenase; Provisional	90.65
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	90.6
PRK06199	379	ornithine cyclodeaminase; Validated	90.55
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.48
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	90.48
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	90.46
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	90.44
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	90.43
PRK07074	257	short chain dehydrogenase; Provisional	90.43
PRK08303	305	short chain dehydrogenase; Provisional	90.42
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	90.38
PLN02827	378	Alcohol dehydrogenase-like	90.33
PRK06184	502	hypothetical protein; Provisional	90.33
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	90.32
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	90.31
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	90.3
PRK14030	445	glutamate dehydrogenase; Provisional	90.3
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	90.28
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	90.27
TIGR01746	367	Thioester-redct thioester reductase domain. It has	90.25
PRK07067	257	sorbitol dehydrogenase; Provisional	90.25
PRK06128	300	oxidoreductase; Provisional	90.2
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	90.2
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	90.16
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.15
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.12
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.11
PRK15076	431	alpha-galactosidase; Provisional	90.1
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	90.07
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	90.03
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	90.0
PRK05717	255	oxidoreductase; Validated	89.99
PRK06185	407	hypothetical protein; Provisional	89.99
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	89.97
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	89.93
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	89.92
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	89.92
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	89.9
PRK07454	241	short chain dehydrogenase; Provisional	89.87
PRK08628	258	short chain dehydrogenase; Provisional	89.83
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	89.83
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	89.82
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	89.8
PRK07236	386	hypothetical protein; Provisional	89.8

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=100.00  E-value=1.2e-82  Score=591.66  Aligned_cols=274  Identities=60%  Similarity=1.018  Sum_probs=269.8

Q ss_pred             CCCCCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccC
Q 019513           61 AVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT  140 (340)
Q Consensus        61 ~~~~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~  140 (340)
                      .+...||.+|+.||+|||++|+||..||.+|++++|+||||||+||+++.||+.+|||+|+|||+|.||.+|||||++|+
T Consensus        34 ~~~~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~  113 (427)
T KOG2017|consen   34 SREAGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHT  113 (427)
T ss_pred             ccccCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCce
Q 019513          141 EPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE  220 (340)
Q Consensus       141 ~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~  220 (340)
                      ++++|+.||++|+..++++||+++|..|+..++++|+++++++||+|+|||||+++||+|+|+|+..|+|+|++++++|+
T Consensus       114 ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~E  193 (427)
T KOG2017|consen  114 EARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWE  193 (427)
T ss_pred             hhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEE
Q 019513          221 GQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK  300 (340)
Q Consensus       221 G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~  300 (340)
                      ||++|++++.+|||||+||.|||+.++++|.++|++||++|++|+|||+|+||+++|.++++.+++++||++++.|++++
T Consensus       194 GQLtvYny~~GPCYRClFP~Ppp~~~vt~C~dgGVlGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~ir  273 (427)
T KOG2017|consen  194 GQLTVYNYNNGPCYRCLFPNPPPPEAVTNCADGGVLGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIR  273 (427)
T ss_pred             ceeEEeecCCCceeeecCCCCcChHHhcccccCceeecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCccCCCCccccccccccchhcccCCCCCCC
Q 019513          301 IRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTI  338 (340)
Q Consensus       301 l~~~~~~C~~Cg~~~~~~~~~~~~~~y~~fcg~~~~~~  338 (340)
                      +|+|+++|.+||+++++|..    +||+.|||++++++
T Consensus       274 lR~r~~~C~~Cg~n~tit~~----~dYe~fCg~~~~~~  307 (427)
T KOG2017|consen  274 LRSRRPKCAVCGKNPTITSL----IDYELFCGSSATDK  307 (427)
T ss_pred             eccCCCCCcccCCCCccCcc----cchhcccCCccccc
Confidence            99999999999999999977    99999999999986

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=3.3e-61  Score=472.99  Aligned_cols=260  Identities=49%  Similarity=0.867  Sum_probs=247.3

Q ss_pred             CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513           65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI  144 (340)
Q Consensus        65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di  144 (340)
                      .|+..+.+||+||+++|+||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++||
T Consensus        10 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv   89 (390)
T PRK07411         10 QLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV   89 (390)
T ss_pred             cCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513          145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT  224 (340)
Q Consensus       145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~  224 (340)
                      |++|+++++++|+++||+++|+++...+++++..++++++|+||||+|++++|++||++|++.++|+|++++.|+.|++.
T Consensus        90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~  169 (390)
T PRK07411         90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQAT  169 (390)
T ss_pred             CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEE
Confidence            99999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCC
Q 019513          225 VYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR  304 (340)
Q Consensus       225 v~~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~  304 (340)
                      ++.++.+|||+|+||.+|+....++|...|++||+++++|+++|.||||+|+|.++++.++++.||+.+++|+.+++. +
T Consensus       170 v~~~~~~~c~~c~~~~~~~~~~~~~c~~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~  248 (390)
T PRK07411        170 VFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLR-P  248 (390)
T ss_pred             EECCCCCCChHHhcCCCCCcccCCCCccCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEecc-C
Confidence            998888999999999877666667899999999999999999999999999999999999999999999999999998 7


Q ss_pred             CCCCCccCCCCccccccccccchhcccCCCC
Q 019513          305 SSQCEACGENSTFTQDHFRNFDYEKFTQSPL  335 (340)
Q Consensus       305 ~~~C~~Cg~~~~~~~~~~~~~~y~~fcg~~~  335 (340)
                      +|+|++|      +..    .+|++|||...
T Consensus       249 ~~~c~~i------~~~----~~~~~~~G~~~  269 (390)
T PRK07411        249 NPERPVI------EKL----IDYEQFCGIPQ  269 (390)
T ss_pred             CCCCCcc------ccc----cchhhhccccc
Confidence            8999875      222    58999998753

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=6.3e-59  Score=448.69  Aligned_cols=263  Identities=28%  Similarity=0.472  Sum_probs=243.3

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc--Cccc
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI--GQSK  148 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di--G~~K  148 (340)
                      .+||+||++++.||.++|++|++++|+|||+||+||++|++|+++|||+|+|||+|.|+.+||+||++|.++|+  |++|
T Consensus         2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K   81 (339)
T PRK07688          2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK   81 (339)
T ss_pred             cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999  5699


Q ss_pred             HHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513          149 VKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY  228 (340)
Q Consensus       149 a~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~  228 (340)
                      +++++++|+++||+++++++...+++++..++++++|+||+|+|++.+|+++|++|+++++|||++++.|+.|++.++.|
T Consensus        82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p  161 (339)
T PRK07688         82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIP  161 (339)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECC
Confidence            99999999999999999999999998888899999999999999999999999999999999999999999999988888


Q ss_pred             CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEec-CCCCC
Q 019513          229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIR-GRSSQ  307 (340)
Q Consensus       229 ~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~-~~~~~  307 (340)
                      +.+|||+|+++.+|+..  ..|.+.|+++|+++++|+++|.|+||+|+|.++++.++++.||..+.+|+.+++. .++|+
T Consensus       162 ~~~pC~~Cl~~~~~~~~--~~c~~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~  239 (339)
T PRK07688        162 GKTPCLRCLLQSIPLGG--ATCDTAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDN  239 (339)
T ss_pred             CCCCCeEeecCCCCCCC--CCCccCCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCC
Confidence            88999999999876543  5799999999999999999999999999999999999999999999999999875 36799


Q ss_pred             CCccCCCCcccccccc-ccchhcccCCCC
Q 019513          308 CEACGENSTFTQDHFR-NFDYEKFTQSPL  335 (340)
Q Consensus       308 C~~Cg~~~~~~~~~~~-~~~y~~fcg~~~  335 (340)
                      ||+||.++.++..+.+ ..+|+.|||...
T Consensus       240 Cp~Cg~~~~~~~~~~~~~~~~~~lcg~~~  268 (339)
T PRK07688        240 CPSCGEKALYPYLNYENTTKTAVLCGRNT  268 (339)
T ss_pred             CCCCCCCCCccccchhhccchhhhcCccc
Confidence            9999987765544322 367889999743

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=1.3e-58  Score=455.31  Aligned_cols=260  Identities=46%  Similarity=0.777  Sum_probs=244.5

Q ss_pred             CCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCc
Q 019513           64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY  143 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~d  143 (340)
                      ..|+.++.+||+||+.+|.||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||++|+++|
T Consensus        13 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~d   92 (392)
T PRK07878         13 AELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD   92 (392)
T ss_pred             cCCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEE
Q 019513          144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL  223 (340)
Q Consensus       144 iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i  223 (340)
                      ||++|+++++++|+++||+++|.++...++.++..++++++|+||+|+|++.+|++||++|+++++|||++++.|+.|++
T Consensus        93 iG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v  172 (392)
T PRK07878         93 VGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQA  172 (392)
T ss_pred             CCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence            99999999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             EEEeC----CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEE
Q 019513          224 TVYNY----NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV  299 (340)
Q Consensus       224 ~v~~~----~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~  299 (340)
                      +++.+    +.+|||+|+|+.+++....++|...|++||+++++|+++|.|+||+|+|.++++.++++.||..+++|+.+
T Consensus       173 ~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~  252 (392)
T PRK07878        173 SVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAEGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTI  252 (392)
T ss_pred             EEEecCCCCCCCCeeeeecCCCCCccCCCCCccCCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeE
Confidence            98863    36899999999877666678999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCccCCCCccccccccccchhcccCCC
Q 019513          300 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP  334 (340)
Q Consensus       300 ~l~~~~~~C~~Cg~~~~~~~~~~~~~~y~~fcg~~  334 (340)
                      ++. ++|+|+      +++..    .+|+.||+..
T Consensus       253 ~~~-~~~~C~------~~~~~----~~~~~~c~~~  276 (392)
T PRK07878        253 KIR-KDPSTP------KITEL----IDYEAFCGVV  276 (392)
T ss_pred             eec-cCCCCC------ccccc----ccchhhcccc
Confidence            998 789994      33333    5899999864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=8.6e-59  Score=447.58  Aligned_cols=263  Identities=29%  Similarity=0.464  Sum_probs=245.3

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccC--ccc
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG--QSK  148 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG--~~K  148 (340)
                      .+||+||++++.||.++|++|++++|+|||+||+|+++|++|+++|||+|+|||+|.|+.+||+||++|+++|+|  ++|
T Consensus         2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K   81 (338)
T PRK12475          2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK   81 (338)
T ss_pred             cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence            369999999999999999999999999999999999999999999999999999999999999999999999985  899


Q ss_pred             HHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513          149 VKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY  228 (340)
Q Consensus       149 a~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~  228 (340)
                      +++++++|+++||+++|+++...+++++..++++++|+||+|+|++.+|++||++|+++++|||++++.|+.|++.++.|
T Consensus        82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P  161 (338)
T PRK12475         82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIP  161 (338)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECC
Confidence            99999999999999999999998888888899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecC-CCCC
Q 019513          229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG-RSSQ  307 (340)
Q Consensus       229 ~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~-~~~~  307 (340)
                      +.+|||+|+++..|...  ..|...|+++|+++++|+++|.|++|+|+|..+++.++++.||.+++.|+.+++.. |+|+
T Consensus       162 ~~tpC~~Cl~~~~p~~~--~~c~~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~~k~p~  239 (338)
T PRK12475        162 GKTPCLRCLMEHVPVGG--ATCDTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNKQKKDT  239 (338)
T ss_pred             CCCCCHHHhcCCCCCCC--CCCccCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEeccCCCCC
Confidence            99999999998865433  46999999999999999999999999999999999999999999999999999963 5999


Q ss_pred             CCccCCCCccccccccc-cchhcccCCCC
Q 019513          308 CEACGENSTFTQDHFRN-FDYEKFTQSPL  335 (340)
Q Consensus       308 C~~Cg~~~~~~~~~~~~-~~y~~fcg~~~  335 (340)
                      ||+||++++++....+. .+|+.+||...
T Consensus       240 Cp~Cg~~~~~~~l~~~~~~~~~~LCgr~~  268 (338)
T PRK12475        240 CPSCGLTRTYPSLTFENQTKTEVLCGRNT  268 (338)
T ss_pred             CCcCCCCCcccccccccCCCeeeccCCce
Confidence            99999987776665444 78999999754

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=2.9e-58  Score=426.16  Aligned_cols=241  Identities=43%  Similarity=0.758  Sum_probs=230.1

Q ss_pred             CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513           65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI  144 (340)
Q Consensus        65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di  144 (340)
                      .|+.++++||+||++++.||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++||
T Consensus         4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv   83 (245)
T PRK05690          4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI   83 (245)
T ss_pred             CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513          145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT  224 (340)
Q Consensus       145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~  224 (340)
                      |++|+++++++|+++||+++|+++...+++++..++++++|+||+|+|++.+|++++++|+++++|+|++++.|+.|++.
T Consensus        84 G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~  163 (245)
T PRK05690         84 GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVT  163 (245)
T ss_pred             CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEE
Confidence            99999999999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             EEeCCC-CCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecC
Q 019513          225 VYNYNG-GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG  303 (340)
Q Consensus       225 v~~~~~-~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~  303 (340)
                      ++.|+. +|||+|+++..++..  ..|...|+++|+++++|+++|+|++|+|+|.++++.|+++.||..+.+|+.+++. 
T Consensus       164 ~~~~~~~~~c~~c~~~~~~~~~--~~~~~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~~-  240 (245)
T PRK05690        164 VFTYQDDEPCYRCLSRLFGENA--LTCVEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLK-  240 (245)
T ss_pred             EEecCCCCceeeeccCCCCCCC--CCcccCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEcC-
Confidence            998764 799999998765432  3799999999999999999999999999999999999999999999999999997 


Q ss_pred             CCCCC
Q 019513          304 RSSQC  308 (340)
Q Consensus       304 ~~~~C  308 (340)
                      |+|+|
T Consensus       241 ~~~~C  245 (245)
T PRK05690        241 RDPGC  245 (245)
T ss_pred             CCcCC
Confidence            88988

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=1.1e-57  Score=420.94  Aligned_cols=238  Identities=41%  Similarity=0.762  Sum_probs=224.7

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK  150 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~  150 (340)
                      ++||+||++++.||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+++.++|||++|++
T Consensus         2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~   81 (240)
T TIGR02355         2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE   81 (240)
T ss_pred             ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence            57999999998889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC-C
Q 019513          151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-N  229 (340)
Q Consensus       151 ~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~-~  229 (340)
                      +++++|+++||+++|++++..+++++..++++++|+||+|+|++.+|.++|++|+++++|+|++++.|+.|++.++.+ +
T Consensus        82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~  161 (240)
T TIGR02355        82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQD  161 (240)
T ss_pred             HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCC
Confidence            999999999999999999999998888899999999999999999999999999999999999999999999987763 5


Q ss_pred             CCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCCCCCCC
Q 019513          230 GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCE  309 (340)
Q Consensus       230 ~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~~~~C~  309 (340)
                      .+|||+|+++..+..  ...|...|+++|+++++|+++|+|++|+|+|.++++.++++.||..+.+|+.+++. ++|+||
T Consensus       162 ~~~c~~C~~~~~~~~--~~~~~~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~~-~~~~C~  238 (240)
T TIGR02355       162 GEPCYRCLSRLFGEN--ALSCVEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLP-KNPTCP  238 (240)
T ss_pred             CCCccccccccCCCC--CCCccccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEecc-CCccCC
Confidence            679999997655432  24688899999999999999999999999999999999999999999999999998 899999


Q ss_pred             cc
Q 019513          310 AC  311 (340)
Q Consensus       310 ~C  311 (340)
                      +|
T Consensus       239 ~C  240 (240)
T TIGR02355       239 VC  240 (240)
T ss_pred             CC
Confidence            99

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=2.8e-57  Score=444.01  Aligned_cols=267  Identities=49%  Similarity=0.884  Sum_probs=251.2

Q ss_pred             CCCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCC
Q 019513           63 DYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEP  142 (340)
Q Consensus        63 ~~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~  142 (340)
                      ...++.++.+||+||+.++.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||++++++
T Consensus       105 ~~~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~  184 (376)
T PRK08762        105 PRLLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTED  184 (376)
T ss_pred             ccCCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchh
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513          143 YIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       143 diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                      |||++|+++++++|+++||++++..+...+++++..++++++|+||+|+|++.+|+++|++|+++++|+|++++.|+.|+
T Consensus       185 diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~  264 (376)
T PRK08762        185 RVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ  264 (376)
T ss_pred             hCCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence            99999999999999999999999999999988888888999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCC----CCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEE
Q 019513          223 LTVYNYNG----GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRI  298 (340)
Q Consensus       223 i~v~~~~~----~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~  298 (340)
                      +.++.|+.    +|||+|+|+..+.....+.|...|++||+++++|+++|+|++|+|+|.++++.++++.||..+..|+.
T Consensus       265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~  344 (376)
T PRK08762        265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRE  344 (376)
T ss_pred             EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCccCCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEE
Confidence            99988765    89999999887666666789999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCccCCCCccccccccccchhcccCCC
Q 019513          299 VKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP  334 (340)
Q Consensus       299 ~~l~~~~~~C~~Cg~~~~~~~~~~~~~~y~~fcg~~  334 (340)
                      +++. |+|+|++||.++.++.-    +||.+||+..
T Consensus       345 ~~~~-~~~~C~~C~~~~~~~~~----~~~~~~~~~~  375 (376)
T PRK08762        345 LRLP-PDPHCPVCAPGRPFPGY----IDYAAFCAGA  375 (376)
T ss_pred             Eecc-CCCCCCCCCCCCCcCcc----cchhhhhCCC
Confidence            9998 89999999987655433    7999999764

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=1.5e-57  Score=443.65  Aligned_cols=250  Identities=36%  Similarity=0.637  Sum_probs=239.3

Q ss_pred             CCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCc
Q 019513           64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY  143 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~d  143 (340)
                      ++|+..|.+||+||++++.||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++|+++|
T Consensus        12 ~~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~d   91 (370)
T PRK05600         12 MQLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASD   91 (370)
T ss_pred             CCCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEE
Q 019513          144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL  223 (340)
Q Consensus       144 iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i  223 (340)
                      ||++|+++++++|+++||+++|+++...+++++..++++++|+||||+|++.+|++||++|+++++|+|++++.|+.|++
T Consensus        92 iG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v  171 (370)
T PRK05600         92 VGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGEL  171 (370)
T ss_pred             CCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEE
Confidence            99999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             EEEeCC---CCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEE
Q 019513          224 TVYNYN---GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK  300 (340)
Q Consensus       224 ~v~~~~---~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~  300 (340)
                      .++.++   .+|||+|+||..++.....+|...|++||+++++|+++|.|++|+|+|.++++.++++.||..+++|+.++
T Consensus       172 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~  251 (370)
T PRK05600        172 AVFNSGPDHRGVGLRDLFPEQPSGDSIPDCATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFR  251 (370)
T ss_pred             EEEecCCCCCCCCcHhhCCCCCccccCCCCccCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEE
Confidence            998864   37999999998766666678999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCccCCC
Q 019513          301 IRGRSSQCEACGEN  314 (340)
Q Consensus       301 l~~~~~~C~~Cg~~  314 (340)
                      +. ++|+|++|.+.
T Consensus       252 ~~-~~~~c~~~~~~  264 (370)
T PRK05600        252 VG-ADPARPLVTRL  264 (370)
T ss_pred             ec-CCCCCCccccc
Confidence            98 78999998863

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=2.2e-57  Score=440.99  Aligned_cols=242  Identities=40%  Similarity=0.679  Sum_probs=232.7

Q ss_pred             CHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCc
Q 019513           67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQ  146 (340)
Q Consensus        67 ~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~  146 (340)
                      ...+.+||+||+++|.||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++|+|+
T Consensus         2 ~~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~   81 (355)
T PRK05597          2 KNLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQ   81 (355)
T ss_pred             ChHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEE
Q 019513          147 SKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY  226 (340)
Q Consensus       147 ~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~  226 (340)
                      +|+++++++|+++||+++|+++...+++++..++++++|+||||+|++.+|+++|++|+++++|+|++++.|+.|++.++
T Consensus        82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~  161 (355)
T PRK05597         82 PKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVF  161 (355)
T ss_pred             hHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEE
Confidence            99999999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCCCC
Q 019513          227 NYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSS  306 (340)
Q Consensus       227 ~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~~~  306 (340)
                      .|+.+|||+|+||..++......|...|++||+++++|+++|.|+||+|+|.++++.++++.||..+++|+.+++. ++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~c~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~~~  240 (355)
T PRK05597        162 HAGHGPIYEDLFPTPPPPGSVPSCSQAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVV-GNP  240 (355)
T ss_pred             cCCCCCCHHHhCCCCCCccCCCCccccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEecc-CCC
Confidence            8888999999999877666677899999999999999999999999999999999999999999999999999998 788


Q ss_pred             CCC
Q 019513          307 QCE  309 (340)
Q Consensus       307 ~C~  309 (340)
                      +|.
T Consensus       241 ~~~  243 (355)
T PRK05597        241 AVL  243 (355)
T ss_pred             CCc
Confidence            884

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=2.4e-56  Score=417.77  Aligned_cols=230  Identities=27%  Similarity=0.357  Sum_probs=218.7

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK  150 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~  150 (340)
                      -+||+||+.+  ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.||||||++|+++|||++|++
T Consensus         7 ~~~ysRq~~~--iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve   84 (287)
T PRK08223          7 DEAFCRNLGW--ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE   84 (287)
T ss_pred             HHHHhhhhhh--cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHH
Confidence            3799999998  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCCh--hhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513          151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY  228 (340)
Q Consensus       151 ~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~  228 (340)
                      +++++|+++||+++|++++..++++|+.++++++|+||||+|++  ++|++||++|+++++|+|+++..|+.|++.++.|
T Consensus        85 ~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p  164 (287)
T PRK08223         85 VLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDP  164 (287)
T ss_pred             HHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcC
Confidence            99999999999999999999999999999999999999999986  8999999999999999999999999999999987


Q ss_pred             CCCCceeecCCC---CCC--------CcccccccCCCcc----------------ccHHHHHHHHHHHHHHHHHhcCCCC
Q 019513          229 NGGPCYRCLFPT---PPP--------TTACQRCADSGVL----------------GVVPGIIGCLQALEAIKVASAVGEP  281 (340)
Q Consensus       229 ~~~pC~~C~~~~---~~~--------~~~~~~c~~~g~~----------------gpv~~i~g~l~A~eaik~l~g~~~~  281 (340)
                      + +|||+|+||.   +|+        +..+++|.+.|++                |++++++|++||.|+||+|+|.+++
T Consensus       165 ~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~  243 (287)
T PRK08223        165 G-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGRGRV  243 (287)
T ss_pred             C-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCCCCc
Confidence            5 8999999998   444        2567899999999                9999999999999999999999998


Q ss_pred             C-CCeEEEEEcCCCcEEEEEecC
Q 019513          282 L-SGRMLLFDALSARIRIVKIRG  303 (340)
Q Consensus       282 ~-~~~~~~fd~~~~~~~~~~l~~  303 (340)
                      + .++++.||+.+++|++.+++.
T Consensus       244 ~~~~~~~~~d~~~~~~~~~~~~~  266 (287)
T PRK08223        244 YAAPWFHQFDAYRSRYVRTWRPG  266 (287)
T ss_pred             CCCCeEEEEEcCCceEEEEEecC
Confidence            5 799999999999999999883

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=1e-53  Score=392.57  Aligned_cols=229  Identities=37%  Similarity=0.602  Sum_probs=217.6

Q ss_pred             CCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccC
Q 019513           66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG  145 (340)
Q Consensus        66 l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG  145 (340)
                      |+..|.+||+||+.+  ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||+++.++|+|
T Consensus         2 l~~~~~~ry~Rq~~~--~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG   79 (231)
T PRK08328          2 LSERELERYDRQIMI--FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLG   79 (231)
T ss_pred             CCHHHHHHHhhHHHh--cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcC
Confidence            788899999999999  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-ccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513          146 Q-SKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT  224 (340)
Q Consensus       146 ~-~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~  224 (340)
                      + +|+++++++|+++||+++|+++...+++++..++++++|+||+|+|++.+|.+++++|+++++|+|++++.|+.|++.
T Consensus        80 ~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~  159 (231)
T PRK08328         80 KNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVT  159 (231)
T ss_pred             chHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEE
Confidence            9 699999999999999999999999888888888999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEe
Q 019513          225 VYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI  301 (340)
Q Consensus       225 v~~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l  301 (340)
                      ++.|+.++||+|+||..++     .+...|++||+++++|+++|+|++|+++|.++++.++++.||..+..|+.+++
T Consensus       160 ~~~p~~~~c~~~~~~~~~~-----~~~~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~  231 (231)
T PRK08328        160 TIVPGKTKRLREIFPKVKK-----KKGKFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL  231 (231)
T ss_pred             EECCCCCCCHHHhCCCCCC-----ccccCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence            9999999999999987542     35567899999999999999999999999999999999999999999988764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=7.4e-52  Score=379.73  Aligned_cols=228  Identities=57%  Similarity=0.996  Sum_probs=216.9

Q ss_pred             hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH
Q 019513           73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA  152 (340)
Q Consensus        73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a  152 (340)
                      ||+||++++.||.++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+++||+||+++.++|+|++|++++
T Consensus         1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~   80 (228)
T cd00757           1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA   80 (228)
T ss_pred             CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCC
Q 019513          153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGP  232 (340)
Q Consensus       153 ~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~p  232 (340)
                      +++|+++||+++++.++..++.++..++++++|+||+|+|++.+|.+++++|+++++|||+++..|+.|++.++.|+.++
T Consensus        81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~  160 (228)
T cd00757          81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGP  160 (228)
T ss_pred             HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCC
Confidence            99999999999999999999888888899999999999999999999999999999999999999999999998888899


Q ss_pred             ceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEe
Q 019513          233 CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI  301 (340)
Q Consensus       233 C~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l  301 (340)
                      ||.|.++..+... ...|...|+++|+++++|+|+|.|++|+++|..+++.++++.||..++.|+++++
T Consensus       161 c~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~  228 (228)
T cd00757         161 CYRCLFPEPPPPG-VPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL  228 (228)
T ss_pred             CccccCCCCCCCC-CCccccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence            9999998765432 4568889999999999999999999999999998889999999999999998864

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=100.00  E-value=1.7e-51  Score=383.07  Aligned_cols=248  Identities=51%  Similarity=0.889  Sum_probs=235.9

Q ss_pred             CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513           65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI  144 (340)
Q Consensus        65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di  144 (340)
                      .|+..+++||+||++++.+|.++|++|++++|+|+|+||+|++++++|+++|||+++|+|+|+|+.+||+||++|+++|+
T Consensus         2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di   81 (254)
T COG0476           2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV   81 (254)
T ss_pred             CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence            47889999999999998888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513          145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT  224 (340)
Q Consensus       145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~  224 (340)
                      |++|++++++.++++||.++++++...++.+++.++++.+|+|++|+|++.+|+++|++|+++++|++++++.|++|+++
T Consensus        82 g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~  161 (254)
T COG0476          82 GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVT  161 (254)
T ss_pred             CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCC-CCCceeecCCCCCCCcccc-cccCCCccccHHHHHHHHHHHHHHHHHhcCC-CCCCCeEEEEEcCCC-cEEEEE
Q 019513          225 VYNYN-GGPCYRCLFPTPPPTTACQ-RCADSGVLGVVPGIIGCLQALEAIKVASAVG-EPLSGRMLLFDALSA-RIRIVK  300 (340)
Q Consensus       225 v~~~~-~~pC~~C~~~~~~~~~~~~-~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~-~~~~~~~~~fd~~~~-~~~~~~  300 (340)
                      ++.|+ .+|||+|+++..|+...+. .|.+.|+++++++++|++++.|++|+++|.+ ++..++++.||.... .|++++
T Consensus       162 ~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~gv~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  241 (254)
T COG0476         162 VIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLK  241 (254)
T ss_pred             EEecCCCCCcccccCCCCCCccccccccccCCccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhh
Confidence            99998 5999999999998766554 5999999999999999999999999999999 888999999999998 899999


Q ss_pred             ecCCCCCCCccC
Q 019513          301 IRGRSSQCEACG  312 (340)
Q Consensus       301 l~~~~~~C~~Cg  312 (340)
                      .......||+||
T Consensus       242 ~~~~~~~~~~c~  253 (254)
T COG0476         242 LRRRPISCPVCG  253 (254)
T ss_pred             cccCCCCCCcCC
Confidence            984444599998

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=100.00  E-value=2.5e-50  Score=385.37  Aligned_cols=240  Identities=18%  Similarity=0.228  Sum_probs=217.9

Q ss_pred             CCCCHHHHhhhhhhccCCC-CC-HHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCC
Q 019513           64 YGLSPDMIYRYSRHLLLPS-FG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE  141 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~~-~G-~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~  141 (340)
                      ++|+.++++||+||+.++. || .++|++|++++|+   +||+|++++.+|++ |||+|+|+|+|.|+.|||+  ++|++
T Consensus        45 ~~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~  118 (318)
T TIGR03603        45 ETLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSK  118 (318)
T ss_pred             hccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhCh
Confidence            4699999999999999977 57 5589999999999   99999999999999 9999999999999999999  99999


Q ss_pred             CccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHH--HHHHHHHcCCcEEEEeecCc
Q 019513          142 PYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYM--ISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       142 ~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~--i~~~~~~~~~p~i~~~~~g~  219 (340)
                      +|||++|+++|+++|.++||+++++.         ..++++++|+||||+|++.+|++  +|++|++.++|||+++..|+
T Consensus       119 ~diG~~K~~~a~~~L~~lnp~v~i~~---------~~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~  189 (318)
T TIGR03603       119 EFILKKDIRDLTSNLDALELTKNVDE---------LKDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGP  189 (318)
T ss_pred             hhcCcHHHHHHHHHHHHhCCCCEEee---------HHHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccC
Confidence            99999999999999999999999865         35678999999999999999977  99999999999999999999


Q ss_pred             eeEEEEEeCCCCCceeecCCCC------------CC--CcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCC-CCC
Q 019513          220 EGQLTVYNYNGGPCYRCLFPTP------------PP--TTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEP-LSG  284 (340)
Q Consensus       220 ~G~i~v~~~~~~pC~~C~~~~~------------~~--~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~-~~~  284 (340)
                      .|++.++.|+.+|||+|+++..            ++  ......|...|++||+++++|+|+|.||+ +++|.+++ +.|
T Consensus       190 ~Gqv~~~~P~~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g  268 (318)
T TIGR03603       190 FVFITCTLPPETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVSTAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEG  268 (318)
T ss_pred             EEEEEEEeCCCCCcHHHccchhhcccccccccccccccCCCCCCCccCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCC
Confidence            9999988888899999998821            01  12234789999999999999999999999 99998886 579


Q ss_pred             eEEEEEcCCCcEEEEEecCCCCCCCccCCCCccccc
Q 019513          285 RMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQD  320 (340)
Q Consensus       285 ~~~~fd~~~~~~~~~~l~~~~~~C~~Cg~~~~~~~~  320 (340)
                      +++.||..+..++.+++. |+|+||+||....+.-+
T Consensus       269 ~ll~id~~t~~~~~~~l~-k~p~Cp~CG~~~~~~~~  303 (318)
T TIGR03603       269 RLLSINLPTLEIQFQDIL-KQSCCSTCGTFNKIKFE  303 (318)
T ss_pred             eEEEEECCCCeEEEEecC-CCCCCcccCCccccchh
Confidence            999999999999999998 89999999998776544

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=5.8e-50  Score=360.82  Aligned_cols=201  Identities=49%  Similarity=0.874  Sum_probs=192.1

Q ss_pred             hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH
Q 019513           73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA  152 (340)
Q Consensus        73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a  152 (340)
                      ||+||++++.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||++|+++|+|++|++++
T Consensus         1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~   80 (202)
T TIGR02356         1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA   80 (202)
T ss_pred             CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCC-CC
Q 019513          153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN-GG  231 (340)
Q Consensus       153 ~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~-~~  231 (340)
                      +++|+++||+++++.++..+++++..++++++|+||+|+|++++|.+++++|+++++|||+++..|+.|++.++.|+ .+
T Consensus        81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~  160 (202)
T TIGR02356        81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEG  160 (202)
T ss_pred             HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCC
Confidence            99999999999999999999888888899999999999999999999999999999999999999999999999987 79


Q ss_pred             CceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHH
Q 019513          232 PCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVA  275 (340)
Q Consensus       232 pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l  275 (340)
                      |||+|+|+..+  .....|...|+++|+++++|+|+|+|++|++
T Consensus       161 ~c~~c~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~e~~k~l  202 (202)
T TIGR02356       161 PCLRCLFPDIA--DTGPSCATAGVIGPVVGVIGSLQALEALKLL  202 (202)
T ss_pred             CChhhcCCCCc--ccCCCCccCCccchHHHHHHHHHHHHHHHhC
Confidence            99999998732  2346799999999999999999999999985

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=4e-45  Score=328.02  Aligned_cols=193  Identities=26%  Similarity=0.429  Sum_probs=181.0

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK  150 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~  150 (340)
                      ++||+||+++  ||.++|++|++++|+|+|+||+||+++++|+++||++|+|+|+|.|+.+||+||++++++|+|++|++
T Consensus         1 ~~~Y~Rqi~l--~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~   78 (197)
T cd01492           1 IALYDRQIRL--WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAE   78 (197)
T ss_pred             CchhhHHHHH--hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHH
Confidence            3699999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCC
Q 019513          151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNG  230 (340)
Q Consensus       151 ~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~  230 (340)
                      +++++|+++||+++++.+...++ ++..++++++|+||+|+|+..++..++++|+++++|+|++++.|+.|++.+..   
T Consensus        79 a~~~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~---  154 (197)
T cd01492          79 ASLERLRALNPRVKVSVDTDDIS-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL---  154 (197)
T ss_pred             HHHHHHHHHCCCCEEEEEecCcc-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec---
Confidence            99999999999999999988887 44677889999999999999999999999999999999999999999986421   


Q ss_pred             CCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc
Q 019513          231 GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR  295 (340)
Q Consensus       231 ~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~  295 (340)
                                               ++|+++++|+++|+|++|+++|.++++. +++.||..+..
T Consensus       155 -------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~-~~~~~d~~~~~  193 (197)
T cd01492         155 -------------------------LAPVAAVVGGILAQDVINALSKRESPLN-NFFVFDGETSE  193 (197)
T ss_pred             -------------------------cccHHHHHHHHHHHHHHHHHhCCCCccC-cEEEEECCCCc
Confidence                                     8899999999999999999999999885 49999998753

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=3.2e-44  Score=322.47  Aligned_cols=189  Identities=26%  Similarity=0.406  Sum_probs=177.8

Q ss_pred             hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCC--CccCcccHH
Q 019513           73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE--PYIGQSKVK  150 (340)
Q Consensus        73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~--~diG~~Ka~  150 (340)
                      +|+||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||+++++  +|+|++|++
T Consensus         1 ~y~Rqi~l--~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~   78 (198)
T cd01485           1 LYDRQIRL--WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAA   78 (198)
T ss_pred             Cccceeec--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHH
Confidence            69999999  99999999999999999999999999999999999999999999999999999999998  899999999


Q ss_pred             HHHHHHHhhCCCceEEEecccCC--cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513          151 SAAATCRSINSTVHIIEHREALR--TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY  228 (340)
Q Consensus       151 ~a~~~L~~lnp~v~i~~~~~~~~--~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~  228 (340)
                      +++++|+++||+++|+++...++  .++..++++++|+||+|+|+...+..+|++|+++++|+|++++.|+.|++.+.. 
T Consensus        79 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~-  157 (198)
T cd01485          79 ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF-  157 (198)
T ss_pred             HHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch-
Confidence            99999999999999999988775  566778899999999999999999999999999999999999999999986521 


Q ss_pred             CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCC
Q 019513          229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSA  294 (340)
Q Consensus       229 ~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~  294 (340)
                                                   |+++++|+++|.|++|+++|.++++ ++++.||....
T Consensus       158 -----------------------------p~~~~~~~~~~~e~~k~l~~~~~~~-~~~~~~d~~~~  193 (198)
T cd01485         158 -----------------------------PIAAFLGGVVAQEAIKSISGKFTPL-NNLYIYDGFES  193 (198)
T ss_pred             -----------------------------hHHHHHHHHHHHHHHHHHhCCCCcc-CcEEEEECccc
Confidence                                         8899999999999999999998887 77999998764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=2.3e-42  Score=325.31  Aligned_cols=215  Identities=27%  Similarity=0.460  Sum_probs=188.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      ||+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||||+++|||++||++++++|+++||+++|+++...+.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999988885


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc--------CCcEEEEeecCceeEEEEEeCCCCCceeecCCCCCCCcc
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVL--------GKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTA  246 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~--------~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~  246 (340)
                      . ..++++++|+||+|+|+.++|.+||+.|...        ++|+|++++.|+.|++.++.|+.++||+|.+...|+...
T Consensus        81 ~-~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~  159 (291)
T cd01488          81 K-DEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVT  159 (291)
T ss_pred             h-hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCC
Confidence            4 4688999999999999999999999988664        499999999999999999999999999999876544433


Q ss_pred             ccccc------------C-------------------------------------------------------CCccccH
Q 019513          247 CQRCA------------D-------------------------------------------------------SGVLGVV  259 (340)
Q Consensus       247 ~~~c~------------~-------------------------------------------------------~g~~gpv  259 (340)
                      .+.|.            .                                                       -++++.+
T Consensus       160 ~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~st  239 (291)
T cd01488         160 FPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVAST  239 (291)
T ss_pred             CCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCch
Confidence            32221            0                                                       1346788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc-EEEEEecCCCCCCCccC
Q 019513          260 PGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACG  312 (340)
Q Consensus       260 ~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~-~~~~~l~~~~~~C~~Cg  312 (340)
                      ++++|++++.|++|++++..+.+.| +++|++..+. ..++++. |+|+|++||
T Consensus       240 naiia~~~~~~~~k~~~~~~~~~~n-~~~~~g~~g~~~~~~~~~-~~~~c~~c~  291 (291)
T cd01488         240 NAIIAAACCLEALKIATDCYENLNN-YLMYNGVDGCYTYTFEHE-RKEDCPVCS  291 (291)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCc-eEEEecCCceEEEEEEEe-eCCCCCCCC
Confidence            8999999999999999998887654 7889998886 4455555 999999997

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=3.6e-41  Score=316.68  Aligned_cols=211  Identities=26%  Similarity=0.401  Sum_probs=185.3

Q ss_pred             hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH
Q 019513           73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA  152 (340)
Q Consensus        73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a  152 (340)
                      .||||+++  ||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+.+||+|||+++++|||++|++++
T Consensus         1 lYsRQl~~--~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~   78 (286)
T cd01491           1 LYSRQLYV--LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEAS   78 (286)
T ss_pred             Ccccceec--cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHH
Confidence            49999999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCC
Q 019513          153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGP  232 (340)
Q Consensus       153 ~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~p  232 (340)
                      +++|+++||+++|+++...++    .+++.++|+||+|.|++..+..||++|+++++|+|.+.+.|+.|++++   .-++
T Consensus        79 ~~~L~eLNp~V~V~~~~~~~~----~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~---dfg~  151 (286)
T cd01491          79 QARLAELNPYVPVTVSTGPLT----TDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC---DFGD  151 (286)
T ss_pred             HHHHHHHCCCCEEEEEeccCC----HHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe---cCCC
Confidence            999999999999999987654    357789999999999999999999999999999999999999999877   4468


Q ss_pred             ceeecCCCCCCCcccc------------ccc-------------------------------------------------
Q 019513          233 CYRCLFPTPPPTTACQ------------RCA-------------------------------------------------  251 (340)
Q Consensus       233 C~~C~~~~~~~~~~~~------------~c~-------------------------------------------------  251 (340)
                      ||.|..+...++.+..            .|.                                                 
T Consensus       152 ~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i~d~~~~~  231 (286)
T cd01491         152 EFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSIGDTSSFS  231 (286)
T ss_pred             eEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEECcCcCcC
Confidence            9999865432221110            010                                                 


Q ss_pred             ---CCCc-----cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCC
Q 019513          252 ---DSGV-----LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALS  293 (340)
Q Consensus       252 ---~~g~-----~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~  293 (340)
                         .+|.     +.|+.+++|+++|+|+||.+++...|+. .++.||...
T Consensus       232 ~y~~gG~~~qvK~~~~~~~~g~~~~q~~~~~~~~~~~p~~-q~~~~~~~~  280 (286)
T cd01491         232 EYIRGGIVTQVKLSPMAAFFGGLAAQEVLKACSGKFTPLK-QWLYFDALE  280 (286)
T ss_pred             ccccCcEEEEEecccHHHHhhhHHHHHHHHHcCCCCCcee-eEEEecHHH
Confidence               0121     6799999999999999999999999986 588888753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=100.00  E-value=5.4e-40  Score=297.87  Aligned_cols=193  Identities=27%  Similarity=0.324  Sum_probs=171.6

Q ss_pred             CCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513           81 PSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN  160 (340)
Q Consensus        81 ~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln  160 (340)
                      +.||.++|++|++++|+|||+||+|++++++|+++||++|+|+|+|.|+.+||+||+++ ++|+|++|+++++++|+++|
T Consensus        16 ~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~ln   94 (212)
T PRK08644         16 SRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEIN   94 (212)
T ss_pred             hhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHC
Confidence            34999999999999999999999999999999999999999999999999999999876 67999999999999999999


Q ss_pred             CCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEEEeecCceeEEEEEeCCC--CCceeec
Q 019513          161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGAALGLEGQLTVYNYNG--GPCYRCL  237 (340)
Q Consensus       161 p~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~~~~~g~~G~i~v~~~~~--~pC~~C~  237 (340)
                      |+++++.++..+++++..++++++|+||+|+|++.+|..+++.|.++ ++|+|+++..+..|+...+.+..  .+||.| 
T Consensus        95 p~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~-  173 (212)
T PRK08644         95 PFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV-  173 (212)
T ss_pred             CCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC-
Confidence            99999999999998888889999999999999999999999999998 99999998888888776555432  344432 


Q ss_pred             CCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCC
Q 019513          238 FPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGE  280 (340)
Q Consensus       238 ~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~  280 (340)
                       +..+    ...|...|+++|+++++|+++|.|++|+++|.+.
T Consensus       174 -~~~~----~~~~~~~gv~~~~~~~i~~~~a~ealk~l~~~~~  211 (212)
T PRK08644        174 -GDFV----TEAKPGNPLMAPRVNIAAAHQANLVLRLILGEEV  211 (212)
T ss_pred             -CCCC----cccCCCCCccchHHHHHHHHHHHHHHHHHhCCCC
Confidence             2221    2357889999999999999999999999998653

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=100.00  E-value=1e-39  Score=330.25  Aligned_cols=235  Identities=22%  Similarity=0.328  Sum_probs=190.9

Q ss_pred             hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc---CcccH
Q 019513           73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI---GQSKV  149 (340)
Q Consensus        73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di---G~~Ka  149 (340)
                      ++-|-.++|++|.   ++|++++|+|||+|||||++|++|+++|||+|+|||+|.|+.|||+||++|+.+|+   |++||
T Consensus       321 kLmkWRllP~l~~---ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA  397 (664)
T TIGR01381       321 KLMKWRLHPDLQL---ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKA  397 (664)
T ss_pred             HHHhhhcCChhhH---HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHH
Confidence            4444455666665   89999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHhhCCCceEEEecccC-------Cc----------ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          150 KSAAATCRSINSTVHIIEHREAL-------RT----------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       150 ~~a~~~L~~lnp~v~i~~~~~~~-------~~----------~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                      ++|+++|+++||+++++.+...+       ++          +++.++++++|+|++|+|++++|++++.+|..+++|+|
T Consensus       398 ~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI  477 (664)
T TIGR01381       398 ETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAI  477 (664)
T ss_pred             HHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence            99999999999999999988773       33          35678899999999999999999999999999999999


Q ss_pred             EEeecCceeEEEEEeC------------------CCCCceeec---CCCCCCCc--ccccccCCCccccHHHHHHHHHHH
Q 019513          213 SGAALGLEGQLTVYNY------------------NGGPCYRCL---FPTPPPTT--ACQRCADSGVLGVVPGIIGCLQAL  269 (340)
Q Consensus       213 ~~~~~g~~G~i~v~~~------------------~~~pC~~C~---~~~~~~~~--~~~~c~~~g~~gpv~~i~g~l~A~  269 (340)
                      ++ +.|++|++.+.+.                  ...+||.|.   +|..+...  --+.|.   |++|..+++|+++|.
T Consensus       478 ~a-AlGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCt---VtrPgv~~ias~~Av  553 (664)
T TIGR01381       478 SA-ALGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCT---VTRPGTAMIASGLAV  553 (664)
T ss_pred             EE-EeccceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccce---EecchHHHHHHHHHH
Confidence            98 5899999988631                  258899999   55443322  114677   999999999999999


Q ss_pred             HHHHHHhcCCCCCC----C----eEE-----EEEcCCCcEEEEEec-CCCCCCCccCCC
Q 019513          270 EAIKVASAVGEPLS----G----RML-----LFDALSARIRIVKIR-GRSSQCEACGEN  314 (340)
Q Consensus       270 eaik~l~g~~~~~~----~----~~~-----~fd~~~~~~~~~~l~-~~~~~C~~Cg~~  314 (340)
                      |+++.++.++....    .    ..+     .+-+.-..|..+.+. .+.+.|.+|++.
T Consensus       554 Ell~~llqhp~~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~aCs~~  612 (664)
T TIGR01381       554 ELLVSVLQHPLPSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCVACSDA  612 (664)
T ss_pred             HHHHHHhcCCcccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCcccCCCHH
Confidence            99999998752110    0    000     111222345555554 467899999984

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK14852 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-39  Score=339.30  Aligned_cols=227  Identities=23%  Similarity=0.318  Sum_probs=199.9

Q ss_pred             hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHH
Q 019513           72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS  151 (340)
Q Consensus        72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~  151 (340)
                      .||+||+.+  ||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+|||||++++.+|||++|+++
T Consensus       313 ~ry~Rqi~l--ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaev  390 (989)
T PRK14852        313 IAFSRNLGL--VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDV  390 (989)
T ss_pred             HHhhchHhh--cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHH
Confidence            689999998  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChh--hHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCC
Q 019513          152 AAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN  229 (340)
Q Consensus       152 a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~  229 (340)
                      ++++|+++||.++|++++..+++++..++++++|+||||+|++.  .+..+++.|+++++|+|+++..|+.|++.++.|+
T Consensus       391 aa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~  470 (989)
T PRK14852        391 MTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG  470 (989)
T ss_pred             HHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC
Confidence            99999999999999999999999999999999999999999854  5677888899999999999999999999998765


Q ss_pred             CCCceeecCCCCCCCccc-------------------c-------cccCCCccccHHHHHHHHHHHHHHHHHhcCCCCC-
Q 019513          230 GGPCYRCLFPTPPPTTAC-------------------Q-------RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPL-  282 (340)
Q Consensus       230 ~~pC~~C~~~~~~~~~~~-------------------~-------~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~-  282 (340)
                       ++||+|+|+..+.....                   .       .-...+.++..+.+.|+++|.|++|+++|.++.. 
T Consensus       471 -~~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~  549 (989)
T PRK14852        471 -GMNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRP  549 (989)
T ss_pred             -CCCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCcccc
Confidence             59999999875431100                   0       0123456667778899999999999999997653 


Q ss_pred             CCeEEEEEcCCCcEEEEEe
Q 019513          283 SGRMLLFDALSARIRIVKI  301 (340)
Q Consensus       283 ~~~~~~fd~~~~~~~~~~l  301 (340)
                      ....+.||++++.+.+-.+
T Consensus       550 ~p~~~qfd~~~~~~~~~~~  568 (989)
T PRK14852        550 VPYFRQFDPLTGRHVRGRL  568 (989)
T ss_pred             Ccchhccchhhcccceeee
Confidence            3568889999987766554

>PRK14851 hypothetical protein; Provisional

Probab=100.00  E-value=5e-39  Score=333.00  Aligned_cols=235  Identities=21%  Similarity=0.305  Sum_probs=205.2

Q ss_pred             CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513           65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI  144 (340)
Q Consensus        65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di  144 (340)
                      .....+.+||+||+.+  ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+++|||||++++.+||
T Consensus        17 ~~~~~~~~ry~R~~~l--~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv   94 (679)
T PRK14851         17 SAAEYREAAFSRNIGL--FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF   94 (679)
T ss_pred             CHHHHHHHHhhhhHHh--cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC
Confidence            3455667999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCCh--hhHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513          145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                      |++|+++++++|+++||.++|++++..+++++..++++++|+||||+|++  .+|.+|++.|+++++|+|+++..|+.|+
T Consensus        95 G~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~  174 (679)
T PRK14851         95 GRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSA  174 (679)
T ss_pred             CCHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccce
Confidence            99999999999999999999999999999999999999999999999974  5789999999999999999999999999


Q ss_pred             EEEEeCCCCCceeecCCCCCCCcc-------------------------c-ccccCCCccccHHHHHHHHHHHHHHHHHh
Q 019513          223 LTVYNYNGGPCYRCLFPTPPPTTA-------------------------C-QRCADSGVLGVVPGIIGCLQALEAIKVAS  276 (340)
Q Consensus       223 i~v~~~~~~pC~~C~~~~~~~~~~-------------------------~-~~c~~~g~~gpv~~i~g~l~A~eaik~l~  276 (340)
                      +.++.|+ ++||.|+|...+....                         + .+-..+..+...+-..+++.+.|++|++.
T Consensus       175 ~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (679)
T PRK14851        175 MLVFTPQ-GMGFDDYFNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIIL  253 (679)
T ss_pred             EEEEcCC-CCCHhHhccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhh
Confidence            9998876 8999999976443110                         0 01223445666677899999999999999


Q ss_pred             cCCCCC-CCeEEEEEcCCCcEEEEEec
Q 019513          277 AVGEPL-SGRMLLFDALSARIRIVKIR  302 (340)
Q Consensus       277 g~~~~~-~~~~~~fd~~~~~~~~~~l~  302 (340)
                      +..... .+.++.||++.+.+....++
T Consensus       254 ~~~~~~~~p~~~~~d~~~~~~~~~~~~  280 (679)
T PRK14851        254 GKGGLRPVPCYLQFDPFLQKLRKGRLS  280 (679)
T ss_pred             cCCeeeccchhhhcchhhcceeEEEee
Confidence            987642 35678899988877665553

>PRK07877 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-37  Score=321.02  Aligned_cols=216  Identities=20%  Similarity=0.206  Sum_probs=183.5

Q ss_pred             CCCHHHH--hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCC
Q 019513           65 GLSPDMI--YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTE  141 (340)
Q Consensus        65 ~l~~~e~--~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~  141 (340)
                      -|.++++  +||+||+.+  ||.++|++|++++|+|||+| +||.+|.+|+++|| |+|+|+|+|.||.|||||| +++.
T Consensus        79 ~~~~~~~~~~r~~Rn~~~--ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~  154 (722)
T PRK07877         79 LLGPREFRAVRLDRNRNK--ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGV  154 (722)
T ss_pred             cCCHHHhhHHHhhchhhh--CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCCh
Confidence            4888998  899999999  99999999999999999997 99999999999996 9999999999999999998 5888


Q ss_pred             CccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513          142 PYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       142 ~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      .|+|++|+++++++|+++||+++|+++...++++|..++++++|+||||+|++.+|++||++|+++++|||+++..+  |
T Consensus       155 ~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g  232 (722)
T PRK07877        155 FDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--G  232 (722)
T ss_pred             hhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--C
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988655  7


Q ss_pred             EEE--EE-eCCCCCceeecCCCCCCCcc--------cc-----------------cc-------cCCCccccHHHHHHHH
Q 019513          222 QLT--VY-NYNGGPCYRCLFPTPPPTTA--------CQ-----------------RC-------ADSGVLGVVPGIIGCL  266 (340)
Q Consensus       222 ~i~--v~-~~~~~pC~~C~~~~~~~~~~--------~~-----------------~c-------~~~g~~gpv~~i~g~l  266 (340)
                      ++.  .+ ..+.+|||+|+++..+....        .+                 ++       ...+.++.-+.+.|++
T Consensus       233 ~~~~e~~~~~p~~pc~~cl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~s~~~~~~~~~~~pql~~~~~~~~~~  312 (722)
T PRK07877        233 LLDVERFDLEPDRPILHGLLGDIDAAKLAGLSTKDKVPHVLRILDAEALSARMAASLVEVDQTLSTWPQLASDVVLGAAA  312 (722)
T ss_pred             CcCcceeeeCCCCceeeccCCCCChhhhccCChhccCcceeeeccccccCHHHHHHHHhccCccccCCchHHHHHhhHHH
Confidence            764  22 23579999999987542111        00                 00       1123455556678888


Q ss_pred             HHHHHHHHHhcCCCCCCCeEE
Q 019513          267 QALEAIKVASAVGEPLSGRML  287 (340)
Q Consensus       267 ~A~eaik~l~g~~~~~~~~~~  287 (340)
                      .+..+.|+++|..-+ +||++
T Consensus       313 ~~~~~~~i~l~~~~~-sgr~~  332 (722)
T PRK07877        313 VAEAVRRIGLGEPLE-SGRVR  332 (722)
T ss_pred             HHHHHHHHHcCCcCC-CCCEE
Confidence            888888999887543 45444

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=100.00  E-value=3.9e-37  Score=292.67  Aligned_cols=145  Identities=30%  Similarity=0.575  Sum_probs=138.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||+++++|||++|+++++++|+++||+++|+++...+++
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             c-cHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCC
Q 019513          175 S-NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP  239 (340)
Q Consensus       175 ~-~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~  239 (340)
                      . ...++++++|+||+|.|+.++|.++|++|+.+++|+|.+++.|+.|++.++.|+.++||.|...
T Consensus        81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~  146 (312)
T cd01489          81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPK  146 (312)
T ss_pred             ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC
Confidence            3 3568899999999999999999999999999999999999999999999999999999999754

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=100.00  E-value=1.3e-36  Score=283.47  Aligned_cols=213  Identities=25%  Similarity=0.347  Sum_probs=178.8

Q ss_pred             CCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCc
Q 019513           64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY  143 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~d  143 (340)
                      ..||.++.+||+||.++  ||.++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||+++..++
T Consensus         3 ~~~~~~~~~rf~R~~~L--~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~   80 (268)
T PRK15116          3 VVISDAWRQRFGGTARL--YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDN   80 (268)
T ss_pred             CCCCHHHHHHHhhHHHH--hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhh
Confidence            35899899999999999  9999999999999999999999999999999999999999999999999999999998899


Q ss_pred             cCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcc-cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCce--
Q 019513          144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE--  220 (340)
Q Consensus       144 iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~-~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~--  220 (340)
                      +|++|++++++++.++||+++|..+...+++++..+++. +||+||+|+|++.++..|+++|+++++|+|+++..|..  
T Consensus        81 vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d  160 (268)
T PRK15116         81 VGLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID  160 (268)
T ss_pred             cChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence            999999999999999999999999988888888777774 79999999999999999999999999999987544332  


Q ss_pred             -eEEEEEe-------C----------C-CC--------CceeecCCCCCCCcc-----------------ccccc-CCCc
Q 019513          221 -GQLTVYN-------Y----------N-GG--------PCYRCLFPTPPPTTA-----------------CQRCA-DSGV  255 (340)
Q Consensus       221 -G~i~v~~-------~----------~-~~--------pC~~C~~~~~~~~~~-----------------~~~c~-~~g~  255 (340)
                       ..+.+-.       |          . .+        .-+.|.|...++...                 ..+|. ..|+
T Consensus       161 p~~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gs  240 (268)
T PRK15116        161 PTQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKSTAEGPKRMDCASGFGA  240 (268)
T ss_pred             CCeEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCCcCCCCCcccccccccccccccccccCCCCCCc
Confidence             1232211       0          1 01        125677755432110                 01343 4588


Q ss_pred             cccHHHHHHHHHHHHHHHHHhcC
Q 019513          256 LGVVPGIIGCLQALEAIKVASAV  278 (340)
Q Consensus       256 ~gpv~~i~g~l~A~eaik~l~g~  278 (340)
                      +..||+++|.++|.++|+.|++.
T Consensus       241 ~~~v~~~~G~~~a~~vi~~l~~~  263 (268)
T PRK15116        241 ATMVTATFGFVAVSHALKKMMAK  263 (268)
T ss_pred             ceehhHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999988754

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=1.8e-36  Score=278.07  Aligned_cols=145  Identities=26%  Similarity=0.473  Sum_probs=138.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      ||+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||+||+++|+|++|+++++++++++||++++.++...+++
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999988864


Q ss_pred             cc--HHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCC
Q 019513          175 SN--ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP  239 (340)
Q Consensus       175 ~~--~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~  239 (340)
                      ++  ..++++++|+||+|+|+.++|.++|++|+.+++|+|++++.|+.|++.++.|+.++||+|.++
T Consensus        81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~  147 (234)
T cd01484          81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLY  147 (234)
T ss_pred             hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCC
Confidence            32  357889999999999999999999999999999999999999999999999999999999983

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-36  Score=278.70  Aligned_cols=229  Identities=27%  Similarity=0.474  Sum_probs=193.1

Q ss_pred             CHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc
Q 019513           84 GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV  163 (340)
Q Consensus        84 G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v  163 (340)
                      +.+..+.|.+.+|+|+|+||+||+++|+|+.+|++.+.+||.|+++.+||||||+|+++|+|++|+++|++.+.+..|.+
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~  110 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC  110 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH---cC-------CcEEEEeecCceeEEEEEeCCCCCc
Q 019513          164 HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV---LG-------KPLVSGAALGLEGQLTVYNYNGGPC  233 (340)
Q Consensus       164 ~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~---~~-------~p~i~~~~~g~~G~i~v~~~~~~pC  233 (340)
                      .|.++..++.+. ..+++++||+||+..|+.++|.+||....+   .|       +|+|++++.|+.|++.++.|+.+.|
T Consensus       111 ~v~~h~~kIqd~-~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC  189 (422)
T KOG2015|consen  111 VVVPHRQKIQDK-PISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC  189 (422)
T ss_pred             EEeeeecchhcC-CHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence            999999888754 367889999999999999999999976544   23       6999999999999999999999999


Q ss_pred             eeecCCCCCCCcccccccC-------------------------------------------------------------
Q 019513          234 YRCLFPTPPPTTACQRCAD-------------------------------------------------------------  252 (340)
Q Consensus       234 ~~C~~~~~~~~~~~~~c~~-------------------------------------------------------------  252 (340)
                      +.|.....|+..+.+-|.-                                                             
T Consensus       190 ieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lv  269 (422)
T KOG2015|consen  190 IECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLV  269 (422)
T ss_pred             HHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhh
Confidence            9997654443333222210                                                             


Q ss_pred             CCc-------cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc-EEEEEecCCCCCCCccCCCC
Q 019513          253 SGV-------LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACGENS  315 (340)
Q Consensus       253 ~g~-------~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~-~~~~~l~~~~~~C~~Cg~~~  315 (340)
                      .|+       .....+++++..|.||+|+++....+..| ++.|+...+- ..++.+. |+++|++||-.+
T Consensus       270 tGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~N-ym~~n~~eG~ytytf~~e-r~~nC~vCS~~~  338 (422)
T KOG2015|consen  270 TGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDN-YMNYNAEEGIYTYTFLLE-RDKNCPVCSNLV  338 (422)
T ss_pred             hhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhh-heeeecccceeEEEeeec-cCCCCccccCCC
Confidence            011       12234689999999999999999888655 7888988887 4556665 999999999844

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=100.00  E-value=7.3e-36  Score=263.06  Aligned_cols=171  Identities=29%  Similarity=0.373  Sum_probs=155.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|+|+|+||+|++++++|+++|+++|+|+|+|.|+.+||+||+++ .+++|++|+++++++|+++||+++++++...+++
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            699999999999999999999999999999999999999999965 5799999999999999999999999999999998


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEEEeecCceeEEEEEeCCC--CCceeecCCCCCCCccccccc
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGAALGLEGQLTVYNYNG--GPCYRCLFPTPPPTTACQRCA  251 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~~~~~g~~G~i~v~~~~~--~pC~~C~~~~~~~~~~~~~c~  251 (340)
                      ++..++++++|+||+|+|++.+|..+++.|.+. ++|||+++..++.|++..+.++.  .+||+|.- ..+     ..|.
T Consensus        80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~  153 (174)
T cd01487          80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICGD-LVN-----EAKE  153 (174)
T ss_pred             hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEeec-CCC-----CCCC
Confidence            888899999999999999999999888887776 99999999999999998877654  57999982 111     2377


Q ss_pred             CCCccccHHHHHHHHHHHHHH
Q 019513          252 DSGVLGVVPGIIGCLQALEAI  272 (340)
Q Consensus       252 ~~g~~gpv~~i~g~l~A~eai  272 (340)
                      ..|++||+++++|+++|.|++
T Consensus       154 ~~g~~~~~~~~~~~~~~~e~~  174 (174)
T cd01487         154 GLGLMAPRVNICAAHQANLVL  174 (174)
T ss_pred             CcCccccHHHHHHHHHHHhhC
Confidence            899999999999999999985

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=100.00  E-value=1.1e-35  Score=267.42  Aligned_cols=186  Identities=25%  Similarity=0.322  Sum_probs=158.3

Q ss_pred             CCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513           81 PSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN  160 (340)
Q Consensus        81 ~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln  160 (340)
                      ..+|.+.|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++||+||++ ..+++|++|++++++.|+++|
T Consensus         9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~in   87 (200)
T TIGR02354         9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEIN   87 (200)
T ss_pred             HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHC
Confidence            3489999999999999999999999999999999999999999999999999999974 567999999999999999999


Q ss_pred             CCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH-HcC-CcEEEEeecCceeEE--EEEeC--CCCCce
Q 019513          161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV-VLG-KPLVSGAALGLEGQL--TVYNY--NGGPCY  234 (340)
Q Consensus       161 p~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~-~~~-~p~i~~~~~g~~G~i--~v~~~--~~~pC~  234 (340)
                      |.+++.++...+++++..++++++|+||+|+|++++|..+++.+. .++ .+++++  .|+.|+.  ..+.+  ...+||
T Consensus        88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~  165 (200)
T TIGR02354        88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFY  165 (200)
T ss_pred             CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEE
Confidence            999999999999999988999999999999999999988665554 444 455664  4555544  33322  345788


Q ss_pred             eecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHH
Q 019513          235 RCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVA  275 (340)
Q Consensus       235 ~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l  275 (340)
                      .|..  .+    ...|...|+++|+++++|++||+|++|++
T Consensus       166 ~~~~--~~----~~~~~~~g~~~p~v~~~a~~qa~~~l~~~  200 (200)
T TIGR02354       166 LCGD--GK----SDAKQGLGLMAPRVQICAAHQANLVLELI  200 (200)
T ss_pred             EcCC--CC----CcccCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            8822  21    12678899999999999999999999974

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=100.00  E-value=1e-35  Score=271.06  Aligned_cols=243  Identities=26%  Similarity=0.412  Sum_probs=207.2

Q ss_pred             CCCCCCCHHHH--hhhhhhccCCCCC-HHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCcccc
Q 019513           61 AVDYGLSPDMI--YRYSRHLLLPSFG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQV  137 (340)
Q Consensus        61 ~~~~~l~~~e~--~ry~Rq~~l~~~G-~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~  137 (340)
                      .+...||.+..  +.|||-|.|.++| ....++|+...|+|||.||+||-+|.+|.|+|||++.|+|+|.|+..|+||.|
T Consensus        47 ~kieklSsEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF  126 (422)
T KOG2336|consen   47 SKIEKLSSEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF  126 (422)
T ss_pred             HHHHHhhhhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc
Confidence            34567888876  7999999999999 57899999999999999999999999999999999999999999999999987


Q ss_pred             ccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc-ccHHhhc-----------ccCcEEEEcCCChhhHHHHHHHHH
Q 019513          138 IHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT-SNALEIL-----------SQYEIVVDATDNAPSRYMISDCCV  205 (340)
Q Consensus       138 l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~-~~~~~~l-----------~~~DlVi~~tD~~~~r~~i~~~~~  205 (340)
                       |..+..|..|++++...|..+||+|.++.|+..++. ++...|.           +..|+|+.|.||+++|..+|.+|.
T Consensus       127 -f~P~QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACN  205 (422)
T KOG2336|consen  127 -FQPDQAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACN  205 (422)
T ss_pred             -cCcccccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHH
Confidence             556799999999999999999999999999999886 4433332           458999999999999999999999


Q ss_pred             HcCCcEEEEeec--CceeEEEEEeCCCCCceeecCCCCCCCc--c-----cccccCCCccccHHHHHHHHHHHHHHHHHh
Q 019513          206 VLGKPLVSGAAL--GLEGQLTVYNYNGGPCYRCLFPTPPPTT--A-----CQRCADSGVLGVVPGIIGCLQALEAIKVAS  276 (340)
Q Consensus       206 ~~~~p~i~~~~~--g~~G~i~v~~~~~~pC~~C~~~~~~~~~--~-----~~~c~~~g~~gpv~~i~g~l~A~eaik~l~  276 (340)
                      +.+..|+..++.  ...|+|..+.|+.++||.|.-|..-...  .     ..-|+  .+++..-|+++++.++.++|+|+
T Consensus       206 E~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTLKReGVCA--ASLPTTMgvvAG~LVqN~LK~LL  283 (422)
T KOG2336|consen  206 ELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPLVVASGIDERTLKREGVCA--ASLPTTMGVVAGFLVQNSLKFLL  283 (422)
T ss_pred             HhhhHHHHccCccccccceeEEecCCccceecccCceeeecCcchhhhhhcceee--ecCcchHHHHHHHHHHHHHHHHh
Confidence            999999875553  5689999999999999999844221100  0     01222  35677789999999999999999


Q ss_pred             cCCCCCCCeEEEEEcCCCcEEEEEecCCCCCCC
Q 019513          277 AVGEPLSGRMLLFDALSARIRIVKIRGRSSQCE  309 (340)
Q Consensus       277 g~~~~~~~~~~~fd~~~~~~~~~~l~~~~~~C~  309 (340)
                      ..++..  .++.|++....|.++.++ ++|+|.
T Consensus       284 NFGeVS--~YlGYNal~DFFP~msmk-PNPqCd  313 (422)
T KOG2336|consen  284 NFGEVS--PYLGYNALSDFFPTMSMK-PNPQCD  313 (422)
T ss_pred             hccccc--hhhcchhHHhhCccccCC-CCCCCC
Confidence            998863  378899999999999998 899985

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=100.00  E-value=2e-34  Score=264.15  Aligned_cols=190  Identities=30%  Similarity=0.426  Sum_probs=160.7

Q ss_pred             CCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC
Q 019513           83 FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST  162 (340)
Q Consensus        83 ~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~  162 (340)
                      ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||+++..+++|++|+++++++|+++||+
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~   80 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE   80 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEecccCCcccHHhhcc-cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCce---eEEEEEeC----------
Q 019513          163 VHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE---GQLTVYNY----------  228 (340)
Q Consensus       163 v~i~~~~~~~~~~~~~~~l~-~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~---G~i~v~~~----------  228 (340)
                      ++|+.+...+++++..+++. ++|+||+|+|+...+..|+++|+++++|+|++...|..   .++.+-.-          
T Consensus        81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~  160 (231)
T cd00755          81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLAR  160 (231)
T ss_pred             cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHH
Confidence            99999999999888877774 69999999999999999999999999999997665543   34443221          


Q ss_pred             ---------CCCCceeecCCCCCCCc------------------ccccccCCCccccHHHHHHHHHHHHHH
Q 019513          229 ---------NGGPCYRCLFPTPPPTT------------------ACQRCADSGVLGVVPGIIGCLQALEAI  272 (340)
Q Consensus       229 ---------~~~pC~~C~~~~~~~~~------------------~~~~c~~~g~~gpv~~i~g~l~A~eai  272 (340)
                               +...-+.|.|...++..                  ....|...|++++||+++|.++|.++|
T Consensus       161 ~~R~~Lrk~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~vp~~~G~~~a~~vi  231 (231)
T cd00755         161 KVRKRLRKRGIFFGVPVVYSTEPPDPPKADELVCGDEVGADAALQGLRRAGLGSASTVPAVFGLAIASEVI  231 (231)
T ss_pred             HHHHHHHHcCCCCCeEEEeCCCCCCCCccccccccccccccccccCCCCCCCCcceechHHHHHHHHHhhC
Confidence                     11112667775543211                  112345678999999999999999875

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=5e-35  Score=313.60  Aligned_cols=177  Identities=27%  Similarity=0.449  Sum_probs=163.6

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCccccccCCCccC
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIG  145 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~Rq~l~~~~diG  145 (340)
                      ..||+||+++  ||.++|++|++++|+|||+||+||+++++|+++||     |+|+|+|+|.|+.|||+||+||+.+|||
T Consensus       399 ~~RYdrqi~l--~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIG  476 (1008)
T TIGR01408       399 GDRYDAQIAV--FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIG  476 (1008)
T ss_pred             hhhhHHHHHH--cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcC
Confidence            4899999999  99999999999999999999999999999999999     8999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhhCCCceEEEecccCCccc--H--HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513          146 QSKVKSAAATCRSINSTVHIIEHREALRTSN--A--LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       146 ~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~--~--~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      ++|+++|+++++++||+++|+++...+.+++  .  .++++++|+||+|.|+..+|.++++.|+.+++|+|.+++.|+.|
T Consensus       477 k~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G  556 (1008)
T TIGR01408       477 KPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKG  556 (1008)
T ss_pred             cHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCcee
Confidence            9999999999999999999999999887542  2  46789999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCceeecCCCCCCCccccccc
Q 019513          222 QLTVYNYNGGPCYRCLFPTPPPTTACQRCA  251 (340)
Q Consensus       222 ~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~  251 (340)
                      ++.++.|+.+.||.|.. . |+....+.|.
T Consensus       557 ~v~v~ip~~te~y~~~~-d-~~~~~~P~Ct  584 (1008)
T TIGR01408       557 NTQVVVPHLTESYGSSR-D-PPEKEIPFCT  584 (1008)
T ss_pred             eEEEEeCCCcCCCCCCC-C-CCCCCCCccc
Confidence            99999999999999984 3 3334455554

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=1.9e-34  Score=309.23  Aligned_cols=150  Identities=24%  Similarity=0.361  Sum_probs=143.9

Q ss_pred             HHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccH
Q 019513           70 MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKV  149 (340)
Q Consensus        70 e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka  149 (340)
                      +.++|+||+++  ||.++|++|++++|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||||++++|||++|+
T Consensus         3 d~~lYsRQi~l--~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka   80 (1008)
T TIGR01408         3 DEALYSRQLYV--LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA   80 (1008)
T ss_pred             hHhhhhhHHHh--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence            45799999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcC--CcEEEEeecCceeEEEE
Q 019513          150 KSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLG--KPLVSGAALGLEGQLTV  225 (340)
Q Consensus       150 ~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~--~p~i~~~~~g~~G~i~v  225 (340)
                      ++++++|+++||+|+|+++...++    .+++++||+||+|.++...+..||++|++++  +|+|++++.|+.|++++
T Consensus        81 ea~~~~L~eLNp~V~V~~~~~~l~----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~  154 (1008)
T TIGR01408        81 EAVVKKLAELNPYVHVSSSSVPFN----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFC  154 (1008)
T ss_pred             HHHHHHHHHHCCCceEEEecccCC----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEe
Confidence            999999999999999999988776    3578999999999999999999999999999  89999999999999865

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=100.00  E-value=2e-34  Score=259.40  Aligned_cols=210  Identities=25%  Similarity=0.363  Sum_probs=177.4

Q ss_pred             HHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcc
Q 019513           68 PDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQS  147 (340)
Q Consensus        68 ~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~  147 (340)
                      ....+||+|..+|  +|.++.++|++++|+|+|+||+||+++..|+|+|+|+|+|||.|.|+.+|+|||......+||++
T Consensus         7 ~~~~~rf~~~~~l--~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~   84 (263)
T COG1179           7 DAYRQRFGGIARL--YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKP   84 (263)
T ss_pred             HHHHHHhhhHHHH--cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccH
Confidence            4556899999999  99999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             cHHHHHHHHHhhCCCceEEEecccCCcccHHhhcc-cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCce---eEE
Q 019513          148 KVKSAAATCRSINSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE---GQL  223 (340)
Q Consensus       148 Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~-~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~---G~i  223 (340)
                      |+++++++++.+||+++|.+++..++++|..+++. +||+||||.|+..++..+-.+|+++++|+|+....|..   -++
T Consensus        85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri  164 (263)
T COG1179          85 KVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRI  164 (263)
T ss_pred             HHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceE
Confidence            99999999999999999999999999999999885 59999999999999999999999999999996544332   233


Q ss_pred             EEEe---------------------CCCCCceeecCCCCCC--Cc-c--------------cccccC-CCccccHHHHHH
Q 019513          224 TVYN---------------------YNGGPCYRCLFPTPPP--TT-A--------------CQRCAD-SGVLGVVPGIIG  264 (340)
Q Consensus       224 ~v~~---------------------~~~~pC~~C~~~~~~~--~~-~--------------~~~c~~-~g~~gpv~~i~g  264 (340)
                      .+-.                     |+..--..|.|...++  |. .              ...|.. .|+.++|++++|
T Consensus       165 ~v~DiskT~~DPLa~~vR~~LRk~~~~~~~gi~vVfS~E~~~~P~~d~~~~~~~~~~~~~~~~~c~~~~gs~~~Vta~fG  244 (263)
T COG1179         165 QVADISKTIQDPLAAKVRRKLRKRFPKIKFGVPVVFSTENPVYPQADGSVCAIDATAESAKRLDCARGLGSATFVTAVFG  244 (263)
T ss_pred             EeeechhhccCcHHHHHHHHHHHhccCCccCCceEecCCCCCCCcccccccccchhhccchhhhhhcCCCcccccchHHH
Confidence            3321                     1112224566654332  11 0              013655 789999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 019513          265 CLQALEAIKVASAVG  279 (340)
Q Consensus       265 ~l~A~eaik~l~g~~  279 (340)
                      ..+|.++++-+....
T Consensus       245 l~~as~vv~~i~~~~  259 (263)
T COG1179         245 LVAASEVVKKILDKK  259 (263)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999887653

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=100.00  E-value=3e-33  Score=262.29  Aligned_cols=217  Identities=22%  Similarity=0.271  Sum_probs=166.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCc--cCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY--IGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~d--iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+||+||+||..+|  +|++|+++++++|+++||+++++.+...+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999999999999  99999999999999999999999887554


Q ss_pred             -----------------CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCC------
Q 019513          173 -----------------RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN------  229 (340)
Q Consensus       173 -----------------~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~------  229 (340)
                                       +.++..++++++|+|++|+|+.++|++++.+|..+++|+|+ .+.|++|++.+.+.-      
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~~~~~~~  159 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGAGPQSQS  159 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCCCccccc
Confidence                             33457788999999999999999999999999999999998 578999999876521      


Q ss_pred             -------------CCCceeecCCCCCCCcc-----cccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCC----C---C
Q 019513          230 -------------GGPCYRCLFPTPPPTTA-----CQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPL----S---G  284 (340)
Q Consensus       230 -------------~~pC~~C~~~~~~~~~~-----~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~----~---~  284 (340)
                                   .-+||.|.....|....     -+.|.   +.-|-.+.+++-+|.|.+--++.++...    .   .
T Consensus       160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqct---vtrpG~a~ias~~avEl~~s~lqhp~~~~a~~~~~~~  236 (307)
T cd01486         160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCT---VTRPGLSMIASSIAVELLVSLLQHPLGGHAPAESSSN  236 (307)
T ss_pred             ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccc---eecCchHHHHHHHHHHHHHHHHcCCCccCCCCccccc
Confidence                         46799998654443211     12232   4445455566666777766666543110    0   0


Q ss_pred             ------eEE-----EEEcCCCcEEEEEec-CCCCCCCccCCCC
Q 019513          285 ------RML-----LFDALSARIRIVKIR-GRSSQCEACGENS  315 (340)
Q Consensus       285 ------~~~-----~fd~~~~~~~~~~l~-~~~~~C~~Cg~~~  315 (340)
                            ..+     .+-++-..|..+++. ++.+.|.+|++.-
T Consensus       237 ~~~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~~v  279 (307)
T cd01486         237 EGDEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSDAV  279 (307)
T ss_pred             cCCCCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCHHH
Confidence                  000     111222345555554 4678999999843

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=100.00  E-value=2.9e-33  Score=276.44  Aligned_cols=204  Identities=20%  Similarity=0.266  Sum_probs=171.7

Q ss_pred             hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHH
Q 019513           72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS  151 (340)
Q Consensus        72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~  151 (340)
                      +|||||+++  ||.++|++|.+++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||||+..+|+|++||++
T Consensus         1 ~rYDRQlrL--wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~   78 (425)
T cd01493           1 QKYDRQLRL--WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEA   78 (425)
T ss_pred             CcchHHHHH--hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHH
Confidence            489999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEecccCCc--ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCC
Q 019513          152 AAATCRSINSTVHIIEHREALRT--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN  229 (340)
Q Consensus       152 a~~~L~~lnp~v~i~~~~~~~~~--~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~  229 (340)
                      +++.|+++||+++++.+...++.  ++..++++++|+||++.++......++++|+++++|+|.+.+.|+.|++++..+ 
T Consensus        79 ~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~-  157 (425)
T cd01493          79 TCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLK-  157 (425)
T ss_pred             HHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEEC-
Confidence            99999999999999998877653  345688999999999999988888999999999999999999999999998775 


Q ss_pred             CCCceeecC---------CCCCCC--ccc----ccccCCCccccHHHHHHHHHHHHHHHHHhcC
Q 019513          230 GGPCYRCLF---------PTPPPT--TAC----QRCADSGVLGVVPGIIGCLQALEAIKVASAV  278 (340)
Q Consensus       230 ~~pC~~C~~---------~~~~~~--~~~----~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~  278 (340)
                      ...+..+--         ..|.|.  ...    ..-.+.-.++++|.++-.+.+++.+|--.+.
T Consensus       158 ~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g  221 (425)
T cd01493         158 EHTIVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNG  221 (425)
T ss_pred             CeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCC
Confidence            222332210         011110  000    0112334688999999999999999877653

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-33  Score=273.02  Aligned_cols=152  Identities=30%  Similarity=0.567  Sum_probs=145.9

Q ss_pred             HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      +-+++++++|||||||||+||+++++|++.|+++|+|||-|+|+.|||||||||+.++||++||.+|++.++++||++++
T Consensus         5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l   84 (603)
T KOG2013|consen    5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL   84 (603)
T ss_pred             HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccCCcc-cHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeec
Q 019513          166 IEHREALRTS-NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCL  237 (340)
Q Consensus       166 ~~~~~~~~~~-~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~  237 (340)
                      .+|...+.+. ...++++.||+|+.|.||.++|..+|+.|....+|+|.+++.|+.||++++.++.+-||.|.
T Consensus        85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~  157 (603)
T KOG2013|consen   85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECI  157 (603)
T ss_pred             EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceeccc
Confidence            9999998864 67888999999999999999999999999999999999999999999999999999999994

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=100.00  E-value=1.1e-32  Score=271.64  Aligned_cols=155  Identities=26%  Similarity=0.452  Sum_probs=142.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +|+|||+||+||+++++|+++||     |+|+|+|.|.||.|||+||+||+++|||++|+++++++++++||+++|+++.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            69999999999999999999999     9999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccH----HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCCCCCCCc
Q 019513          170 EALRTSNA----LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT  245 (340)
Q Consensus       170 ~~~~~~~~----~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~  245 (340)
                      ..+.+++.    .++++++|+||+|.|++++|..+++.|+.+++|+|.+++.|+.|++.++.|+.++||+|...  |+..
T Consensus        81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~--p~~~  158 (435)
T cd01490          81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRD--PPEK  158 (435)
T ss_pred             cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCC--CCCC
Confidence            88876433    46789999999999999999999999999999999999999999999999999999999843  3334


Q ss_pred             cccccc
Q 019513          246 ACQRCA  251 (340)
Q Consensus       246 ~~~~c~  251 (340)
                      ..+.|.
T Consensus       159 ~~P~Ct  164 (435)
T cd01490         159 SIPLCT  164 (435)
T ss_pred             CCCCcc
Confidence            455554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-32  Score=251.91  Aligned_cols=230  Identities=23%  Similarity=0.353  Sum_probs=191.5

Q ss_pred             CCCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCC
Q 019513           63 DYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEP  142 (340)
Q Consensus        63 ~~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~  142 (340)
                      .+.||.+|+.-|||||+|  ||.++|++|+++||+|+|++|+|.+++++|+++||++++++|+-.|.+.+++-|||...+
T Consensus         3 ~~else~E~alYDRQIRL--WG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~   80 (331)
T KOG2014|consen    3 GEELSEQEIALYDRQIRL--WGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISAS   80 (331)
T ss_pred             hhhhhHHHHHHHHHHHHH--ccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchh
Confidence            357999999999999999  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513          143 YIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       143 diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                      ++|+.|+++..++++++||.|++......+...+ .++|.+||+||..--+.+.+..+|..|++++++|+.+...|+.|+
T Consensus        81 ~vg~~raeas~erl~~LNPmV~v~~d~edl~ek~-eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy  159 (331)
T KOG2014|consen   81 SVGQTRAEASLERLQDLNPMVDVSVDKEDLSEKD-EEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGY  159 (331)
T ss_pred             hhchHHHHHHHHHHHhcCCceEEEechhhhhhcc-hhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeee
Confidence            9999999999999999999999998888777543 789999999997766777888899999999999999999999999


Q ss_pred             EEEEeC------C--C-------------------CCceeecCC--------CC--------------------------
Q 019513          223 LTVYNY------N--G-------------------GPCYRCLFP--------TP--------------------------  241 (340)
Q Consensus       223 i~v~~~------~--~-------------------~pC~~C~~~--------~~--------------------------  241 (340)
                      .++-..      .  .                   .-|.-|+-|        ..                          
T Consensus       160 ~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s  239 (331)
T KOG2014|consen  160 AFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLKFRTS  239 (331)
T ss_pred             eeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHHHHHh
Confidence            865321      0  0                   001111100        00                          


Q ss_pred             --CCCccc-------------cccc---------------CCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEc
Q 019513          242 --PPTTAC-------------QRCA---------------DSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDA  291 (340)
Q Consensus       242 --~~~~~~-------------~~c~---------------~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~  291 (340)
                        ..+...             ..|.               -+..++|+++++|++.|+|+||.+++..+|+.| +++||+
T Consensus       240 ~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~N-ff~fdg  318 (331)
T KOG2014|consen  240 EGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNN-FFIFDG  318 (331)
T ss_pred             cCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccc-eEEeec
Confidence              000000             0011               023578999999999999999999999999866 999999


Q ss_pred             CCCcE
Q 019513          292 LSARI  296 (340)
Q Consensus       292 ~~~~~  296 (340)
                      .++..
T Consensus       319 ~~g~g  323 (331)
T KOG2014|consen  319 ETGKG  323 (331)
T ss_pred             ccCce
Confidence            99764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=100.00  E-value=3.8e-32  Score=229.52  Aligned_cols=134  Identities=34%  Similarity=0.607  Sum_probs=125.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      |++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||+++..+|+|++|+++++++|+++||++++.+++..
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEE
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV  225 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v  225 (340)
                      ++.++..++++++|+||+|+|+.+.+.+++++|+++++|+|+++..|+.|++..
T Consensus        81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~  134 (135)
T PF00899_consen   81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM  134 (135)
T ss_dssp             CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred             cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence            988888899999999999999999999999999999999999999999999843

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.97  E-value=2e-30  Score=220.94  Aligned_cols=133  Identities=35%  Similarity=0.617  Sum_probs=128.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||++++.+++|++|+++++++++++||+++++.++..+++
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEe
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN  227 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~  227 (340)
                      .+..++++++|+||+|+|+.+.+..++++|+++++|+|+++..|+.|+++++.
T Consensus        81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence            77778889999999999999999999999999999999999999999998875

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.96  E-value=2.9e-29  Score=231.00  Aligned_cols=206  Identities=20%  Similarity=0.183  Sum_probs=163.3

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCC-----C-----cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGV-----G-----RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN  160 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGv-----g-----~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln  160 (340)
                      -+..+|+|||+||+||+++++|+++|+     |     +|+|+|+|.|+++||+||+ |...|||++|+++++++++.++
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence            477899999999999999999999973     4     9999999999999999995 5668999999999999999988


Q ss_pred             CCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--c-CCcEEEEeecCceeEEEEE-----------
Q 019513          161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--L-GKPLVSGAALGLEGQLTVY-----------  226 (340)
Q Consensus       161 p~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~-~~p~i~~~~~g~~G~i~v~-----------  226 (340)
                       .++++++...+.++   .++.++|+||+|+|+.++|..|++.|++  . ++||+.++..+..|++.+-           
T Consensus        88 -~~~i~a~~~~~~~~---~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~  163 (244)
T TIGR03736        88 -GTDWTAHPERVERS---STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENR  163 (244)
T ss_pred             -CceEEEEEeeeCch---hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCc
Confidence             89999999888763   3456899999999999999999999988  3 4899999987777666443           


Q ss_pred             --eCCCCCceeecCCCCC-CCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCC--CCCCCeEEEEEcCCCcEEEEEe
Q 019513          227 --NYNGGPCYRCLFPTPP-PTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVG--EPLSGRMLLFDALSARIRIVKI  301 (340)
Q Consensus       227 --~~~~~pC~~C~~~~~~-~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~--~~~~~~~~~fd~~~~~~~~~~l  301 (340)
                        .|..+.||.|.....+ +..+.++|+..-.+.+-.-++..++|+.+..+|-...  ..+..+..+||+.++..+.+++
T Consensus       164 ~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~v  243 (244)
T TIGR03736       164 LRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFRKGRLEFHGVFVNLATGRTNPLPV  243 (244)
T ss_pred             eecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCceeeeEEEEECCCCccccccC
Confidence              3455667777655422 4456789998888887666666666666665555432  2245678889998887766654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.96  E-value=1.3e-29  Score=230.33  Aligned_cols=118  Identities=19%  Similarity=0.297  Sum_probs=110.5

Q ss_pred             CCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccC
Q 019513           66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG  145 (340)
Q Consensus        66 l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG  145 (340)
                      |+++|.+||+||+++  ||.++|++|++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+||+||+++++ ++|
T Consensus         1 ms~~E~~RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvG   77 (287)
T PTZ00245          1 MRDAEAVRYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAG   77 (287)
T ss_pred             CCHHHHHHHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccC
Confidence            678899999999999  99999999999999999999999999999999999999999999999999999999997 689


Q ss_pred             cccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCC
Q 019513          146 QSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD  192 (340)
Q Consensus       146 ~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD  192 (340)
                      ++|+++++++|+++||+++|.+++..+++.+      +|++||.+.-
T Consensus        78 k~KAeaAa~~L~eLNP~V~V~~i~~rld~~n------~fqvvV~~~~  118 (287)
T PTZ00245         78 GTRGARALGALQRLNPHVSVYDAVTKLDGSS------GTRVTMAAVI  118 (287)
T ss_pred             CcHHHHHHHHHHHHCCCcEEEEcccccCCcC------CceEEEEEcc
Confidence            9999999999999999999999998887653      7888885543

>PRK06153 hypothetical protein; Provisional

Probab=99.95  E-value=8.1e-27  Score=225.27  Aligned_cols=149  Identities=25%  Similarity=0.279  Sum_probs=127.7

Q ss_pred             HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCcccc-ccCCCccCc--ccHHHHHHHHHhhCCC
Q 019513           86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQV-IHTEPYIGQ--SKVKSAAATCRSINST  162 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~-l~~~~diG~--~Ka~~a~~~L~~lnp~  162 (340)
                      .-|++|++++|+||||||+||.++.+|+++||++|+|||+|.|+++||+||+ +++.+|+|+  +|++++++++.++|+.
T Consensus       169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~  248 (393)
T PRK06153        169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG  248 (393)
T ss_pred             HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence            5699999999999999999999999999999999999999999999999998 568899999  9999999999999984


Q ss_pred             ceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCCCCC
Q 019513          163 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPP  242 (340)
Q Consensus       163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~  242 (340)
                        |.++...+++++.. .+.++|+||+|+|+.++|.+|+++|.++++|||+++..     +.+.+-..+.|.||.+..|.
T Consensus       249 --I~~~~~~I~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~~g~l~G~~Rvt~~~p~  320 (393)
T PRK06153        249 --IVPHPEYIDEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELSNGSLGGILRVTLSTPD  320 (393)
T ss_pred             --EEEEeecCCHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceecCCCcCcEEEEEEecCC
Confidence              56777788776654 67899999999999999999999999999999997642     11111112458888775553

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.4e-27  Score=219.35  Aligned_cols=221  Identities=27%  Similarity=0.421  Sum_probs=174.5

Q ss_pred             hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHH
Q 019513           72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS  151 (340)
Q Consensus        72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~  151 (340)
                      +...|+..+  ||.++|+||+++-|+||||||+||+++.+|+|+|+++|.|||+|.|+.|.||||....-+|||.||+.+
T Consensus        55 eqLarN~aF--fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~c  132 (430)
T KOG2018|consen   55 EQLARNYAF--FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMC  132 (430)
T ss_pred             HHHHhHHhh--hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHH
Confidence            566788888  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEecccCCcccHHhhc-ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCcee---EEEEEe
Q 019513          152 AAATCRSINSTVHIIEHREALRTSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG---QLTVYN  227 (340)
Q Consensus       152 a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l-~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G---~i~v~~  227 (340)
                      ++++++++.|+++|.+.+.-++.++..+++ .+.|+|+||.||..++--+-++|+.+++++|+....+...   .+.+-.
T Consensus       133 lkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~D  212 (430)
T KOG2018|consen  133 LKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVAD  212 (430)
T ss_pred             HHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhh
Confidence            999999999999999999999998888877 5699999999999999999999999999999854433322   222111


Q ss_pred             ---CCCCCceeec----------------C----CCC------CCCcc------c------c--cccCCCccccHHHHHH
Q 019513          228 ---YNGGPCYRCL----------------F----PTP------PPTTA------C------Q--RCADSGVLGVVPGIIG  264 (340)
Q Consensus       228 ---~~~~pC~~C~----------------~----~~~------~~~~~------~------~--~c~~~g~~gpv~~i~g  264 (340)
                         ....|--||.                |    |.|      |..+.      +      +  .-.-.+++|++|+++|
T Consensus       213 is~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFG  292 (430)
T KOG2018|consen  213 ISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFG  292 (430)
T ss_pred             ccccccCcHHHHHHHHHHHhccccCCceEEecCCCCccccccCCCCccccccCChhhhhhccchhhhhcccccCcchHHH
Confidence               1223333331                1    111      00000      0      0  1112578999999999


Q ss_pred             HHHHHHHHHHHhcCC-CCCC--CeEEEEEcCCC
Q 019513          265 CLQALEAIKVASAVG-EPLS--GRMLLFDALSA  294 (340)
Q Consensus       265 ~l~A~eaik~l~g~~-~~~~--~~~~~fd~~~~  294 (340)
                      ..+|.-++--+.+.+ +|..  +|+-.||..-.
T Consensus       293 ltiat~vlt~ia~~pmepi~~~nrlk~Yd~i~q  325 (430)
T KOG2018|consen  293 LTIATYVLTQIAQYPMEPIENKNRLKHYDLIHQ  325 (430)
T ss_pred             HHHHHHHHHHHhcCCCCcccccchhHHHHHHHH
Confidence            999999999988775 3332  45556665443

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.94  E-value=7.6e-26  Score=227.64  Aligned_cols=231  Identities=15%  Similarity=0.229  Sum_probs=181.8

Q ss_pred             CCCCCHHHHhhhhhhccC-C---CCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccc
Q 019513           63 DYGLSPDMIYRYSRHLLL-P---SFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVI  138 (340)
Q Consensus        63 ~~~l~~~e~~ry~Rq~~l-~---~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l  138 (340)
                      ++.|++.+.+||..|+.+ .   ..|....++.++++|+|+|.|++|+.++..|+++|+++|..||+|.+ .+|++|   
T Consensus        95 p~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR---  170 (637)
T TIGR03693        95 PHELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR---  170 (637)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH---
Confidence            346999999999999975 2   23456677779999999999999999999999999999999999999 999999   


Q ss_pred             cCCCccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChh--hHHHHHHHHHHcCCcEE---E
Q 019513          139 HTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLV---S  213 (340)
Q Consensus       139 ~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~~p~i---~  213 (340)
                           ||+. ++.+++    .||++.++.++. -..++..+.++++|+||..+|++.  .-.++|+.|++.|+|||   .
T Consensus       171 -----IgEl-~e~A~~----~n~~v~v~~i~~-~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~  239 (637)
T TIGR03693       171 -----IHEL-AEIAEE----TDDALLVQEIDF-AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC  239 (637)
T ss_pred             -----HHHH-HHHHHH----hCCCCceEeccC-CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence                 7776 666665    899999998876 335678889999999999999755  34569999999996555   4


Q ss_pred             EeecCceeEEEEEeCCCCCceeecCCCCCCCcccccccCCCccccH-HHHHHHHHHHHHHHHHhcCCCC-CCCeEEEEEc
Q 019513          214 GAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVV-PGIIGCLQALEAIKVASAVGEP-LSGRMLLFDA  291 (340)
Q Consensus       214 ~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv-~~i~g~l~A~eaik~l~g~~~~-~~~~~~~fd~  291 (340)
                      ++..++.|.+  +.|+.++||.|.+........... .....++|. .++++.+++.|++|++++..+. ..++++.||.
T Consensus       240 ~G~~~liGPl--ftPgkTGCWeCa~~RL~e~~L~~~-~~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDl  316 (637)
T TIGR03693       240 LKQVGLAGPV--FQQHGDECFEAAWHRLHESALHEE-NSLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDL  316 (637)
T ss_pred             cccceeecce--ECCCCCcHHHHHHHHHHHHhcCCC-CcccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEc
Confidence            5556666764  348999999996622110000000 122444454 7899999999999999986443 5578999999


Q ss_pred             CCCcEEEEEecCCCCCCCccCC
Q 019513          292 LSARIRIVKIRGRSSQCEACGE  313 (340)
Q Consensus       292 ~~~~~~~~~l~~~~~~C~~Cg~  313 (340)
                      .+....++++. |+|+|+ |..
T Consensus       317 eTLE~~WH~vv-krPqC~-~~~  336 (637)
T TIGR03693       317 ATLEGGWHAFI-KHPDAS-CEK  336 (637)
T ss_pred             cccccccccCC-CCCCCC-CCC
Confidence            99988888887 899999 874

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.7e-26  Score=230.47  Aligned_cols=149  Identities=26%  Similarity=0.397  Sum_probs=140.4

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK  150 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~  150 (340)
                      ..-||||+.+  +|.+++++|..++|+|.|++|||.+|||||+++||+++||.|...+.+++|..||+++++|||+++++
T Consensus        17 E~LYSRQLYV--lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~   94 (1013)
T KOG2012|consen   17 ESLYSRQLYV--LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAE   94 (1013)
T ss_pred             hhhhhhhhhh--ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHH
Confidence            3689999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEE
Q 019513          151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV  225 (340)
Q Consensus       151 ~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v  225 (340)
                      +..++|.++|+.|.|..+...++    .+++++|++||.+.-..+....|+++|+++++.+|.+.+.|+.|+++.
T Consensus        95 as~~~LaeLN~yV~V~v~t~~~~----~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFC  165 (1013)
T KOG2012|consen   95 ASVEKLAELNNYVPVVVLTGPLT----EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFC  165 (1013)
T ss_pred             HHHHHHHHhhcceeeEEecCccc----HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhc
Confidence            99999999999999999887776    568899999998777777888899999999999999999999888753

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.1e-26  Score=234.09  Aligned_cols=183  Identities=27%  Similarity=0.450  Sum_probs=161.7

Q ss_pred             CCCHHHH----hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCcc
Q 019513           65 GLSPDMI----YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHR  135 (340)
Q Consensus        65 ~l~~~e~----~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~R  135 (340)
                      ++++++.    .|||-|+.+  ||..-|+||.+.++.+||+|++||+.+||++.+||     |.|++.|.|.+|.|||||
T Consensus       400 ~~~e~d~~prgsRYD~qiav--fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnR  477 (1013)
T KOG2012|consen  400 PPSEEDCQPRGSRYDGQIAV--FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNR  477 (1013)
T ss_pred             CCCHHHcccccCccccchhh--hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccc
Confidence            4555554    499999999  99999999999999999999999999999999999     479999999999999999


Q ss_pred             ccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCccc----HHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcE
Q 019513          136 QVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSN----ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL  211 (340)
Q Consensus       136 q~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~----~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~  211 (340)
                      ||||+..|||++|++.|++....+||+++|.++..++.++.    ..+++.+.|+|..+.||..+|.++..-|+-+.+|+
T Consensus       478 QFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPL  557 (1013)
T KOG2012|consen  478 QFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPL  557 (1013)
T ss_pred             eeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccch
Confidence            99999999999999999999999999999999998876532    36788999999999999999999999999999999


Q ss_pred             EEEeecCceeEEEEEeCCCCCceeecCCCCCCCccccccc
Q 019513          212 VSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA  251 (340)
Q Consensus       212 i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~  251 (340)
                      +..+++|+.|...++.|.-+--|.-.  ..||..+.+-|.
T Consensus       558 LESGTlGTKGntQVvvPhlTEsY~SS--~DPPEksiP~CT  595 (1013)
T KOG2012|consen  558 LESGTLGTKGNTQVVVPHLTESYGSS--RDPPEKSIPVCT  595 (1013)
T ss_pred             hhccCcCCccceeEEecccccccccc--CCCcccCCceee
Confidence            99999999999999988777666322  233444444443

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.7e-24  Score=205.69  Aligned_cols=206  Identities=23%  Similarity=0.291  Sum_probs=165.9

Q ss_pred             HHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCccc
Q 019513           69 DMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSK  148 (340)
Q Consensus        69 ~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~K  148 (340)
                      +-.+|||||+++  ||..||..|..++|+++|||++||+++++|++.|||.|++||+..|+.++++.+|+...+++|++|
T Consensus         5 ~~~~kYDRQlRl--wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~Gksr   82 (523)
T KOG2016|consen    5 EPKTKYDRQLRL--WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSR   82 (523)
T ss_pred             chhhHHHHHHHH--HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhH
Confidence            456899999999  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCceEEEecccCCc--ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEE
Q 019513          149 VKSAAATCRSINSTVHIIEHREALRT--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY  226 (340)
Q Consensus       149 a~~a~~~L~~lnp~v~i~~~~~~~~~--~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~  226 (340)
                      |++..+.|+++||+|.-.......+.  .+..+++..+++|+.+--+..+-..+.++|+.+++|++.+.++|+.|.+++.
T Consensus        83 A~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~  162 (523)
T KOG2016|consen   83 AEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRIS  162 (523)
T ss_pred             HHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEE
Confidence            99999999999999987665554432  4557788999999966666666677999999999999999999999999886


Q ss_pred             eC--------CCCCceeecCCCCCCCc--c----cccccCCCccccHHHHHHHHHHHHHHHHHh
Q 019513          227 NY--------NGGPCYRCLFPTPPPTT--A----CQRCADSGVLGVVPGIIGCLQALEAIKVAS  276 (340)
Q Consensus       227 ~~--------~~~pC~~C~~~~~~~~~--~----~~~c~~~g~~gpv~~i~g~l~A~eaik~l~  276 (340)
                      ..        ++.+-++-....|.|..  -    ..+-.+...+.++|.++-.+-+++.+.--.
T Consensus       163 ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~  226 (523)
T KOG2016|consen  163 IKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQH  226 (523)
T ss_pred             eeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhh
Confidence            52        22333333333332211  0    112334556778888887777777665444

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]

Probab=99.83  E-value=3.1e-20  Score=181.55  Aligned_cols=189  Identities=21%  Similarity=0.261  Sum_probs=146.8

Q ss_pred             HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc---CcccHHHHHHHHHhhCCCc
Q 019513           87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI---GQSKVKSAAATCRSINSTV  163 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di---G~~Ka~~a~~~L~~lnp~v  163 (340)
                      ..+++++.++++.|+|.+||.||++|...||++||+||+..|+.||-.||.||+-+|-   |++||+.|+++|++++|.+
T Consensus       334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m  413 (669)
T KOG2337|consen  334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSM  413 (669)
T ss_pred             chhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccc
Confidence            3578999999999999999999999999999999999999999999999999988876   4999999999999999998


Q ss_pred             eEEEecccCC-------c----------ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEE
Q 019513          164 HIIEHREALR-------T----------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY  226 (340)
Q Consensus       164 ~i~~~~~~~~-------~----------~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~  226 (340)
                      +-..+...+.       +          +...++++++|+|+..+|+.+.|++-.-.|...++-+|++ ++|++.++..-
T Consensus       414 ~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINa-ALGFDsylVMR  492 (669)
T KOG2337|consen  414 EATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINA-ALGFDSYLVMR  492 (669)
T ss_pred             cccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeee-ecccceeEEEe
Confidence            8666544331       1          1245678999999999999999999888888888877776 47888887553


Q ss_pred             eC--------------------CCCCceeecCCCCCCCccc-----ccccCCCccccHHHHHHHHHHHHHHHHHhcCC
Q 019513          227 NY--------------------NGGPCYRCLFPTPPPTTAC-----QRCADSGVLGVVPGIIGCLQALEAIKVASAVG  279 (340)
Q Consensus       227 ~~--------------------~~~pC~~C~~~~~~~~~~~-----~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~  279 (340)
                      +.                    ..-+||-|..-..|.....     +.|.   |.-|-.+++++-.|.|.+--++.++
T Consensus       493 HG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCT---VtRPG~a~IA~alAVELlvslLQhP  567 (669)
T KOG2337|consen  493 HGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCT---VTRPGVANIASALAVELLVSLLQHP  567 (669)
T ss_pred             cCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheee---ccCCchhHHHHHHHHHHHHHHHhCc
Confidence            31                    1346899976555443221     2343   4445556666666777666665544

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=99.81  E-value=3e-20  Score=144.59  Aligned_cols=83  Identities=49%  Similarity=0.993  Sum_probs=60.8

Q ss_pred             CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCCCCCC
Q 019513          229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC  308 (340)
Q Consensus       229 ~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~~~~C  308 (340)
                      +++|||||+||..  +...++|...|++||+++++|+++|+||||+|+|.++++.++++.||+.+.+|+.+++. |+|+|
T Consensus         1 g~~pC~rCl~p~~--~~~~~~C~~~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~-k~~~C   77 (84)
T PF05237_consen    1 GKTPCYRCLFPEP--PESAPTCAEAGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIK-KNPDC   77 (84)
T ss_dssp             -T---HHHHHTTS--S--TTSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE-----TT-
T ss_pred             CCCceehhcCCCC--CccCCCccccccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecC-CCccC
Confidence            4689999999988  55667999999999999999999999999999999999999999999999999999998 99999


Q ss_pred             CccCCC
Q 019513          309 EACGEN  314 (340)
Q Consensus       309 ~~Cg~~  314 (340)
                      ++||++
T Consensus        78 ~~C~~~   83 (84)
T PF05237_consen   78 PVCGPK   83 (84)
T ss_dssp             TTT---
T ss_pred             cCcCcC
Confidence            999974

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.73  E-value=2.7e-07  Score=79.19  Aligned_cols=180  Identities=19%  Similarity=0.240  Sum_probs=120.8

Q ss_pred             CCcEEEEcCChhHHHHHHHHH---HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           93 KSSILVIGAGGLGSPALLYLA---ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La---~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      ...|.++|||-+|--++..|.   +.|..+|.++|+..|++.++-...+..  .+|.+|++-++ +|....+.-++++++
T Consensus        18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~Ga--~~GEyKv~Fi~-rl~~~~f~r~V~a~p   94 (217)
T COG4015          18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRLGA--KVGEYKVDFIK-RLGRVHFGRRVEAFP   94 (217)
T ss_pred             CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHhCC--CcchhHHHHHH-HhCcCCCCceeeccc
Confidence            456999999999999999987   689999999999999999986554443  69999998875 455666788999999


Q ss_pred             ccCCcccHHhhcccCcEEEEcC---CChhhHHHHHHHHHHcCCcEEEEe-ecCc-eeEEEEEe--CCCCCceeecCCCCC
Q 019513          170 EALRTSNALEILSQYEIVVDAT---DNAPSRYMISDCCVVLGKPLVSGA-ALGL-EGQLTVYN--YNGGPCYRCLFPTPP  242 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~t---D~~~~r~~i~~~~~~~~~p~i~~~-~~g~-~G~i~v~~--~~~~pC~~C~~~~~~  242 (340)
                      ..++.+|+..+..  |+|+.|.   |+.+.-..|..+|++.|+..|+.. ++|. .-.+.+..  ..++|-.+-+....-
T Consensus        95 E~it~dNlhll~g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~GVFGigeEev~v~~~eeA~gP~~~~lldeg~  172 (217)
T COG4015          95 ENITKDNLHLLKG--DVVVICIAGGDTIPVTAAIINYAKERGIKTISTNGVFGIGEEEVKVCDAEEAKGPAKFLLLDEGG  172 (217)
T ss_pred             ccccccchhhhcC--CEEEEEecCCCcchhHHHHHHHHHHcCceEeecCceeecchhheEEeehhhcCccHHHHHHhcCC
Confidence            9999998776543  7777664   667777788889999999888743 2332 11233332  122333322222211


Q ss_pred             CCc-cc---ccccCC-CccccHHHHHHHHHHHHHHHHHhc
Q 019513          243 PTT-AC---QRCADS-GVLGVVPGIIGCLQALEAIKVASA  277 (340)
Q Consensus       243 ~~~-~~---~~c~~~-g~~gpv~~i~g~l~A~eaik~l~g  277 (340)
                      +.. -+   .-..+. ++.+.+---++--+..|++|+|..
T Consensus       173 ~dHilVgTgk~IRD~ePitPyvLdrva~~mt~e~Lr~L~~  212 (217)
T COG4015         173 PDHILVGTGKFIRDFEPITPYVLDRVAKRMTIECLRILWS  212 (217)
T ss_pred             CceEEEecCccccCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            100 00   011121 223334445777888999998854

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=98.42  E-value=3.9e-06  Score=75.24  Aligned_cols=95  Identities=19%  Similarity=0.318  Sum_probs=73.5

Q ss_pred             CHHHHHcccCCcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC
Q 019513           84 GVEGQSNLLKSSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST  162 (340)
Q Consensus        84 G~~~q~~L~~~~VlVvG~GglGs~-va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~  162 (340)
                      +...+++|++++|.|+|.|+.|+. ++..|+.+|++.+.                  .+                     
T Consensus        96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~~---------------------  136 (193)
T TIGR03882        96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------SE---------------------  136 (193)
T ss_pred             HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------CC---------------------
Confidence            457789999999999999999988 99999999988554                  00                     


Q ss_pred             ceEEEecccCCcccHHhhcccCcEEEEcCCChhhHH-HHHHHHHHcCCcEEEEeecCceeEEEE-EeCCCCCceeec
Q 019513          163 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRY-MISDCCVVLGKPLVSGAALGLEGQLTV-YNYNGGPCYRCL  237 (340)
Q Consensus       163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~-~i~~~~~~~~~p~i~~~~~g~~G~i~v-~~~~~~pC~~C~  237 (340)
                                         .+.++|+ +.|....+. .+|+.+...++||+.....|..+.+.. +.|+.++||+|+
T Consensus       137 -------------------a~l~vVl-~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~  193 (193)
T TIGR03882       137 -------------------ADLTVVL-TDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL  193 (193)
T ss_pred             -------------------CCEEEEE-eCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence                               1244555 455545544 489999999999999887776666654 458999999995

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.24  E-value=4.7e-06  Score=79.08  Aligned_cols=78  Identities=24%  Similarity=0.290  Sum_probs=62.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .++.++|+|+|+||+|..++..|+..|+++|+|+|.+                   ..|++.+++.+...++.+.+... 
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~-  183 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAG-  183 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEec-
Confidence            3667899999999999999999999999999999865                   25889999998887776554332 


Q ss_pred             ccCCcccHHhhcccCcEEEEcCC
Q 019513          170 EALRTSNALEILSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD  192 (340)
                           ++..+.+.++|+||+||-
T Consensus       184 -----~~~~~~~~~aDiVInaTp  201 (284)
T PRK12549        184 -----SDLAAALAAADGLVHATP  201 (284)
T ss_pred             -----cchHhhhCCCCEEEECCc
Confidence                 222345678999999974

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.23  E-value=7.9e-06  Score=80.33  Aligned_cols=98  Identities=24%  Similarity=0.362  Sum_probs=72.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .+|+|+|+|++|+.+|..|++.|.++|+|.|...                   .|+    +++...... ++++...++.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~----~~i~~~~~~-~v~~~~vD~~   57 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKC----ARIAELIGG-KVEALQVDAA   57 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHH----HHHHhhccc-cceeEEeccc
Confidence            5799999999999999999999999999987421                   122    222222111 4555555554


Q ss_pred             c-ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          174 T-SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       174 ~-~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                      . +...++++++|+||+|...+-.. .+-++|.+.|+++++.+.
T Consensus        58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~  100 (389)
T COG1748          58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSY  100 (389)
T ss_pred             ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEccc
Confidence            3 45678899999999998865554 677899999999998764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.19  E-value=6.3e-06  Score=69.51  Aligned_cols=81  Identities=28%  Similarity=0.366  Sum_probs=58.9

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|++++|+|+|+||.|..++.+|...|+++|+|++.+                   ..|++.+++.+    +...+...
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~   64 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI   64 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence            47899999999999999999999999999999998632                   13566666666    33333332


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPS  196 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~  196 (340)
                      ..    ++..+.+.++|+||.||.....
T Consensus        65 ~~----~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   65 PL----EDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             EG----GGHCHHHHTESEEEE-SSTTST
T ss_pred             eH----HHHHHHHhhCCeEEEecCCCCc
Confidence            22    2233567889999999987543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.00  E-value=7.2e-05  Score=67.52  Aligned_cols=92  Identities=10%  Similarity=0.172  Sum_probs=64.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      -.|++++|+|||.|.+|...++.|...| .++++|+.+.                     ...+.+...    .-.+...
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~---------------------~~~l~~l~~----~~~i~~~   59 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL---------------------TENLVKLVE----EGKIRWK   59 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC---------------------CHHHHHHHh----CCCEEEE
Confidence            3589999999999999999999999999 6899987531                     011111111    1123333


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL  211 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~  211 (340)
                      ...+.    ...+.++|+||.||++.+.-..|...| +.++++
T Consensus        60 ~~~~~----~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lv   97 (202)
T PRK06718         60 QKEFE----PSDIVDAFLVIAATNDPRVNEQVKEDL-PENALF   97 (202)
T ss_pred             ecCCC----hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcE
Confidence            33233    234678999999999999988899999 456644

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.84  E-value=3.1e-05  Score=62.23  Aligned_cols=88  Identities=19%  Similarity=0.292  Sum_probs=63.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .|++++|+|||.|.+|..-++.|..+| .+++++..+. +.                     .    +   ..+++  ..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~----~---~~i~~--~~   51 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------S----E---GLIQL--IR   51 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------H----H---TSCEE--EE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------h----h---hHHHH--Hh
Confidence            578999999999999999999999999 6899988764 10                     0    0   12222  22


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      ..+     .+.+.++++|+.|+++......|.+.|++.++|+-.+
T Consensus        52 ~~~-----~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   52 REF-----EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV   91 (103)
T ss_dssp             SS------GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred             hhH-----HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence            222     2347889999999999999999999999999976543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.82  E-value=0.00028  Score=63.88  Aligned_cols=94  Identities=19%  Similarity=0.250  Sum_probs=69.4

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .|++++|+|||.|.+|..-++.|...|. ++++|+++.-                     ..+. .+.+.   -.+..+.
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~-~l~~~---~~i~~~~   59 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELT-LLAEQ---GGITWLA   59 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHH-HHHHc---CCEEEEe
Confidence            4789999999999999999999999995 7999987531                     0111 11111   1344444


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      ..+.    ...+.++++||.|||+.+....|...|+..++++-.
T Consensus        60 ~~~~----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        60 RCFD----ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNV   99 (205)
T ss_pred             CCCC----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEE
Confidence            4444    234688999999999988888899999999997743

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.71  E-value=0.00015  Score=71.47  Aligned_cols=96  Identities=21%  Similarity=0.286  Sum_probs=65.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           96 ILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      |+|+|+|.+|+.++..|++.+-- ++++.|.+.                   .|++.+++.+    ....+.....++.+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~   57 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND   57 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence            79999999999999999999854 899988543                   2333333333    23345555555553


Q ss_pred             -ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          175 -SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       175 -~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                       +...++++++|+||+|...+ ....+-++|.+.|+++|+.+
T Consensus        58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEESS
T ss_pred             HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeeccc
Confidence             44678899999999999866 66678899999999999943

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.68  E-value=0.00016  Score=68.58  Aligned_cols=79  Identities=23%  Similarity=0.352  Sum_probs=56.4

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +++++|+|+|+||.|..++..|+..|+.+|+|+|.+.                   .|++.+++.+....+...+.... 
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~-  184 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVD-  184 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecC-
Confidence            5678999999999999999999999999999997542                   37788887776544432222211 


Q ss_pred             cCCcccHHhhcccCcEEEEcCC
Q 019513          171 ALRTSNALEILSQYEIVVDATD  192 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD  192 (340)
                         .....+.+..+|+||+||-
T Consensus       185 ---~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        185 ---ARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             ---HhHHHHHHhhcCEEEEcCC
Confidence               1111223467999999985

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.67  E-value=0.00049  Score=59.62  Aligned_cols=87  Identities=14%  Similarity=0.255  Sum_probs=62.8

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      +-.|++++|+|||.|.+|...++.|...|. ++++|+.+..+                         .+.++ +.  +..
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~~--i~~   58 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-PY--ITW   58 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-cC--cEE
Confidence            347899999999999999999999999995 68898755321                         01111 11  222


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL  207 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~  207 (340)
                      ....+.+    ..+.++|+||.+||+.+....+...|++.
T Consensus        59 ~~~~~~~----~dl~~a~lViaaT~d~e~N~~i~~~a~~~   94 (157)
T PRK06719         59 KQKTFSN----DDIKDAHLIYAATNQHAVNMMVKQAAHDF   94 (157)
T ss_pred             EecccCh----hcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence            2333332    23678999999999999988888888774

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.65  E-value=0.00022  Score=67.84  Aligned_cols=84  Identities=18%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +++++|+|+|+||+|..++..|+..|+.+|+|++.+.-                ...|++.+++.+.+..+.+.+...+ 
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d-  186 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYD-  186 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEec-
Confidence            56789999999999999999999999999999874310                1135666777776655554443332 


Q ss_pred             cCCc-ccHHhhcccCcEEEEcCC
Q 019513          171 ALRT-SNALEILSQYEIVVDATD  192 (340)
Q Consensus       171 ~~~~-~~~~~~l~~~DlVi~~tD  192 (340)
                       ++. +...+.+..+|+||+||-
T Consensus       187 -~~~~~~~~~~~~~~DilINaTp  208 (289)
T PRK12548        187 -LNDTEKLKAEIASSDILVNATL  208 (289)
T ss_pred             -hhhhhHHHhhhccCCEEEEeCC
Confidence             221 233445677899998874

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.52  E-value=0.0014  Score=60.05  Aligned_cols=97  Identities=16%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      .-.+++.+|+|||.|.++..=+..|..+| .+|++|-++.-+                         .+.++...-.+..
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~-------------------------el~~l~~~~~i~~   73 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK-------------------------EFLDLKKYGNLKL   73 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH-------------------------HHHHHHhCCCEEE
Confidence            34677899999999999999999999999 569998665310                         1111111222444


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      +...+.+    ..+.++++||.|||+...-..|...|...++++..+
T Consensus        74 ~~r~~~~----~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562         74 IKGNYDK----EFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             EeCCCCh----HHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence            4444443    346789999999999999999999999999876654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.44  E-value=0.00045  Score=65.47  Aligned_cols=78  Identities=26%  Similarity=0.320  Sum_probs=54.8

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +++++|+|+|+||.|..++..|+..|+.+|+|++.+                   ..|++.+++.+.... .  +.... 
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~-  179 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLE-  179 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceecc-
Confidence            567899999999999999999999999999998643                   136777776654321 1  11111 


Q ss_pred             cCCcccHHhhcccCcEEEEcCCC
Q 019513          171 ALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                       . .++....+..+|+||.||-.
T Consensus       180 -~-~~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       180 -G-DSGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             -c-hhhhhhcccCCCEEEECCCC
Confidence             0 01223445789999999864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.40  E-value=0.00058  Score=67.33  Aligned_cols=112  Identities=20%  Similarity=0.332  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccCCCCCCccCCCCC------CCCCCCCCCCCHHHHhhhhhhcc
Q 019513           13 VLGEIETLKAAKSDIDYRISALEAQLR-------DTTVSQPQTDTVSNGSY------RPSSAVDYGLSPDMIYRYSRHLL   79 (340)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~e~~ry~Rq~~   79 (340)
                      ||++++++|.+|.++..+|-+|-.+-.       +.....+.+. ..+...      .........|+++.++..-|.++
T Consensus         1 ~~~~L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~~v-~d~~Re~~vl~~~~~~~~~~~l~~~~~~~i~~~i~   79 (374)
T PRK11199          1 MVAELTALRDQIDEVDKQLLELLAKRLELVAQVGEVKSRHGLPI-YVPEREAAMLASRRAEAEALGVPPDLIEDVLRRVM   79 (374)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            367788888888888887776632221       1111111000 000000      00001124578887777766654


Q ss_pred             CCCCCHHHHHccc-----CCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           80 LPSFGVEGQSNLL-----KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        80 l~~~G~~~q~~L~-----~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -..+-.+.+..++     ..+|+||| +|.+|..++..|...|. .++++|.+
T Consensus        80 ~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~  131 (374)
T PRK11199         80 RESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD  131 (374)
T ss_pred             HHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence            2111122233332     36799998 99999999999999994 58888864

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.36  E-value=0.00072  Score=64.34  Aligned_cols=83  Identities=16%  Similarity=0.162  Sum_probs=56.2

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +++++|+|+|+||.+..++..|+..|+.+|+|++.+.                -...|++.+++.+....+ ..+.... 
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~-  183 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD-  183 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence            5778999999999999999999999999999987431                113477777777754332 2222211 


Q ss_pred             cCCc-ccHHhhcccCcEEEEcCC
Q 019513          171 ALRT-SNALEILSQYEIVVDATD  192 (340)
Q Consensus       171 ~~~~-~~~~~~l~~~DlVi~~tD  192 (340)
                       +.. ....+.+.++|+||+||-
T Consensus       184 -~~~~~~l~~~~~~aDivINaTp  205 (288)
T PRK12749        184 -LADQQAFAEALASADILTNGTK  205 (288)
T ss_pred             -hhhhhhhhhhcccCCEEEECCC
Confidence             111 112234567999999874

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.31  E-value=0.00044  Score=68.59  Aligned_cols=76  Identities=26%  Similarity=0.419  Sum_probs=59.4

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .|++++|+|||+|-+|.-+|++|+..|+.+|+|+.          |+.         -|++.+++.+.     .++.   
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN----------RT~---------erA~~La~~~~-----~~~~---  227 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN----------RTL---------ERAEELAKKLG-----AEAV---  227 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc----------CCH---------HHHHHHHHHhC-----Ceee---
Confidence            48999999999999999999999999999999963          433         36666676665     2221   


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                         .-++..+.+.++|+||.+|..+.
T Consensus       228 ---~l~el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         228 ---ALEELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             ---cHHHHHHhhhhCCEEEEecCCCc
Confidence               22345677899999999998765

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.30  E-value=0.00072  Score=63.88  Aligned_cols=76  Identities=24%  Similarity=0.444  Sum_probs=54.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||+|..++..|...|+.++++++.+                   ..|++.+++.+....+ +.+   .
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~  176 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D  176 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence            3678899999999999999999999999999998743                   1356666665543321 111   1


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                           .+..+.+.++|+||+||-.
T Consensus       177 -----~~~~~~~~~~DivInaTp~  195 (278)
T PRK00258        177 -----LELQEELADFDLIINATSA  195 (278)
T ss_pred             -----ccchhccccCCEEEECCcC
Confidence                 1123456789999999854

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.27  E-value=0.00095  Score=63.29  Aligned_cols=145  Identities=21%  Similarity=0.328  Sum_probs=83.6

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +++++|+|+|+||.+..++..|+..|+.+|+|++..                   ..|++.+++.+.+..+.+.......
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~  184 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALAD  184 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccccc
Confidence            346899999999999999999999999999998643                   2478888888887765222211111


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCCCCCCCcccccc
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC  250 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c  250 (340)
                             .+....+|+||+||----.-..        +-+.+...          ..+...-+++..|... +......+
T Consensus       185 -------~~~~~~~dliINaTp~Gm~~~~--------~~~~~~~~----------~l~~~~~v~D~vY~P~-~TplL~~A  238 (283)
T COG0169         185 -------LEGLEEADLLINATPVGMAGPE--------GDSPVPAE----------LLPKGAIVYDVVYNPL-ETPLLREA  238 (283)
T ss_pred             -------cccccccCEEEECCCCCCCCCC--------CCCCCcHH----------hcCcCCEEEEeccCCC-CCHHHHHH
Confidence                   0111168999998753110000        00111100          1122233455554322 11111223


Q ss_pred             cCCCccccHHHH-HHHHHHHHHHHHHhcCCCC
Q 019513          251 ADSGVLGVVPGI-IGCLQALEAIKVASAVGEP  281 (340)
Q Consensus       251 ~~~g~~gpv~~i-~g~l~A~eaik~l~g~~~~  281 (340)
                      ...|.. .+.|+ |-..||.|+.++.+|..++
T Consensus       239 ~~~G~~-~idGl~Mlv~Qaa~aF~lwtg~~p~  269 (283)
T COG0169         239 RAQGAK-TIDGLGMLVHQAAEAFELWTGVEPP  269 (283)
T ss_pred             HHcCCe-EECcHHHHHHHHHHHHHHHhCCCCC
Confidence            333433 33333 5566999999999998554

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.21  E-value=0.00073  Score=67.50  Aligned_cols=77  Identities=17%  Similarity=0.274  Sum_probs=56.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+.+++|+|+|+|+.|..++++|+..|+.+|+|+...                   ..|++.+++.+.    ...+..  
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~--  232 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHY--  232 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEec--
Confidence            4778999999999999999999999999999997532                   125555554432    122111  


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                          -++..+.+.++|+||.||..+.
T Consensus       233 ----~~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        233 ----LSELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             ----HHHHHHHhccCCEEEECcCCCC
Confidence                1344667889999999998755

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.21  E-value=0.0029  Score=52.52  Aligned_cols=96  Identities=25%  Similarity=0.341  Sum_probs=61.0

Q ss_pred             cEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ||+|+|+ |-+|..+++.+.. .|+.=...+|...=        . +...|+|.    .+    ......+.+       
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--------~-~~g~d~g~----~~----~~~~~~~~v-------   57 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--------A-KVGKDVGE----LA----GIGPLGVPV-------   57 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--------T-TTTSBCHH----HC----TSST-SSBE-------
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--------c-cccchhhh----hh----CcCCccccc-------
Confidence            7999999 9999999999998 77666667765430        0 00123331    10    000111111       


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                       .++..+++..+|+|||.| +++.-...-++|.++++|+|.+.+
T Consensus        58 -~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTT   99 (124)
T PF01113_consen   58 -TDDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTT   99 (124)
T ss_dssp             -BS-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred             -chhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECC
Confidence             245677777899999999 677777888899999999998754

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.12  E-value=0.0016  Score=55.37  Aligned_cols=36  Identities=31%  Similarity=0.527  Sum_probs=31.8

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++++|+|+|+|++|..+++.|...|...++++|.+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            667899999999999999999999987778888743

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.12  E-value=0.0013  Score=60.47  Aligned_cols=37  Identities=27%  Similarity=0.412  Sum_probs=35.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D  126 (340)
                      .+++.+|+|+|+|+.|..++..|+..|+.  +|.|+|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            58889999999999999999999999999  99999976

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.10  E-value=0.0013  Score=57.71  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|.+++|+|||+|. +|..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            58999999999998 59999999999998 6888773

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.10  E-value=0.0033  Score=63.07  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=62.7

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+|++|..+|+.|+..|. +++++|.+.-                  ...+...+.|.+.+  ++  .+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~--~~--~~~   58 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG--IE--LVL   58 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC--CE--EEe
Confidence            3678999999999999999999999996 6899886531                  01122223343332  22  222


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      ....    .+.+.++|+||.+++..+... +-.+|++.|+|++.
T Consensus        59 ~~~~----~~~~~~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~   97 (450)
T PRK14106         59 GEYP----EEFLEGVDLVVVSPGVPLDSP-PVVQAHKKGIEVIG   97 (450)
T ss_pred             CCcc----hhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEEe
Confidence            2222    134567999999988655444 44566778888765

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.07  E-value=0.0018  Score=58.78  Aligned_cols=95  Identities=19%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      -.|++++|+|||.|.+|..=++.|..+| .+++++-.+. +                    ......+.+    ..+..+
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-~--------------------~el~~~~~~----~~i~~~   61 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-E--------------------PELKALIEE----GKIKWI   61 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-c--------------------HHHHHHHHh----cCcchh
Confidence            3688999999999999999999999999 5678775443 0                    111111111    113333


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      ...+.    .+.+.++++||.|||+......|.+.|.++++|+-.
T Consensus        62 ~~~~~----~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          62 EREFD----AEDLDDAFLVIAATDDEELNERIAKAARERRILVNV  102 (210)
T ss_pred             hcccC----hhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceec
Confidence            32233    233455999999999999999999999999987654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.06  E-value=0.0025  Score=61.18  Aligned_cols=83  Identities=27%  Similarity=0.390  Sum_probs=58.0

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.+.+|+|+|+|.+|..++++|...|+.+++++|.+.                   .|+..+++.+.   .  .+..   
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g---~--~~~~---  228 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG---G--NAVP---  228 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC---C--eEEe---
Confidence            6889999999999999999999999999999987532                   23444443331   1  1111   


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHH
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDC  203 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~  203 (340)
                         .++..+.+..+|+||.||..+.....+...
T Consensus       229 ---~~~~~~~l~~aDvVi~at~~~~~~~~~~~~  258 (311)
T cd05213         229 ---LDELLELLNEADVVISATGAPHYAKIVERA  258 (311)
T ss_pred             ---HHHHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence               123455677899999999987773334433

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.05  E-value=0.0071  Score=55.47  Aligned_cols=97  Identities=21%  Similarity=0.247  Sum_probs=66.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .+++|+|+|-+|..+|+.|+..| ..+.+||.|.                      +.+.+.+..   .....++...-+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~----------------------~~~~~~~~~---~~~~~~v~gd~t   54 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRDE----------------------ERVEEFLAD---ELDTHVVIGDAT   54 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcCH----------------------HHHHHHhhh---hcceEEEEecCC
Confidence            47999999999999999999999 4577787653                      112222221   122334433434


Q ss_pred             ccc-HHhh-cccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEEEee
Q 019513          174 TSN-ALEI-LSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSGAA  216 (340)
Q Consensus       174 ~~~-~~~~-l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~~~~  216 (340)
                      ..+ +.+. +.++|+++.+|++-.....+-..+.+ +|+|-+.+-+
T Consensus        55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~  100 (225)
T COG0569          55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA  100 (225)
T ss_pred             CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence            332 2333 58899999999998887777777766 8999887654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.97  E-value=0.0033  Score=62.88  Aligned_cols=77  Identities=23%  Similarity=0.340  Sum_probs=54.2

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+.+++|+|+|+|.+|..++++|...|+.+++++|.+.                   .|++.+++.+   . . ..    
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~-------------------~ra~~la~~~---g-~-~~----  228 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY-------------------ERAEDLAKEL---G-G-EA----  228 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHc---C-C-eE----
Confidence            47889999999999999999999999999999987531                   2333333322   1 1 11    


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPS  196 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~  196 (340)
                        +..++..+.+.++|+||.||..+..
T Consensus       229 --i~~~~l~~~l~~aDvVi~aT~s~~~  253 (417)
T TIGR01035       229 --VKFEDLEEYLAEADIVISSTGAPHP  253 (417)
T ss_pred             --eeHHHHHHHHhhCCEEEECCCCCCc
Confidence              1112445667889999999987553

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.86  E-value=0.0087  Score=65.91  Aligned_cols=99  Identities=19%  Similarity=0.324  Sum_probs=63.0

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCC-C------------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGV-G------------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR  157 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGv-g------------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~  157 (340)
                      -+.++|+|+|+|.+|..++.+|++.+- .            .+++.|.                   -..+++.+++   
T Consensus       567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~---  624 (1042)
T PLN02819        567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVE---  624 (1042)
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHH---
Confidence            457799999999999999999998642 2            2444432                   2223333333   


Q ss_pred             hhCCCceEEEecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          158 SINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       158 ~lnp~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                       ..|+++....  ++. .+...++++++|+||.|+.. .....+...|.+.|++++..+
T Consensus       625 -~~~~~~~v~l--Dv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        625 -GIENAEAVQL--DVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             -hcCCCceEEe--ecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence             2344332222  222 34456666889999999876 345567778888888877654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.86  E-value=0.0054  Score=58.72  Aligned_cols=74  Identities=23%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC----CceEEEe
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIEH  168 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp----~v~i~~~  168 (340)
                      ++|.|+|+|++|+.+|..|+..|+. +|.|+|.+                   ..|++..+..|....+    .+.+.. 
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~-   60 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA-   60 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence            3799999999999999999999985 89999853                   2345556666655432    222221 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCCh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                            .+ .+.+.++|+||.++..+
T Consensus        61 ------~~-~~~l~~aDIVIitag~~   79 (306)
T cd05291          61 ------GD-YSDCKDADIVVITAGAP   79 (306)
T ss_pred             ------CC-HHHhCCCCEEEEccCCC
Confidence                  11 23368999999999874

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.80  E-value=0.0091  Score=60.47  Aligned_cols=94  Identities=14%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      -.|++++|+|||.|.++..=++.|..+|. +|++|-++.-                         ..+.++...-.+..+
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~   61 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLV   61 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEE
Confidence            46899999999999999999999999995 6888754321                         112222222234444


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                      ...+.    .+.++++++||.|||+......|.+.|+..++++-
T Consensus        62 ~~~~~----~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN  101 (457)
T PRK10637         62 EGPFD----ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN  101 (457)
T ss_pred             eCCCC----hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence            54444    34568899999999999999999999999988643

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.78  E-value=0.0057  Score=52.73  Aligned_cols=94  Identities=21%  Similarity=0.267  Sum_probs=59.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh------CCCceEEEe
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI------NSTVHIIEH  168 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l------np~v~i~~~  168 (340)
                      +|.|+|+|..|+.+|..|+..| .+++|...|.=                       ..+.|++-      .|..++.. 
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-----------------------~~~~i~~~~~n~~~~~~~~l~~-   55 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-----------------------QIEEINETRQNPKYLPGIKLPE-   55 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-----------------------HHHHHHHHTSETTTSTTSBEET-
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-----------------------HHHHHHHhCCCCCCCCCcccCc-
Confidence            6999999999999999999999 67888765531                       11122211      22332222 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG  214 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~  214 (340)
                      +..+ ..+..+.+++.|+||.++-+...+..+.+...  +.+.++|+.
T Consensus        56 ~i~~-t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   56 NIKA-TTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             TEEE-ESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred             cccc-ccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence            1122 24556778999999999998888877777654  456667763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.73  E-value=0.0047  Score=52.47  Aligned_cols=77  Identities=23%  Similarity=0.318  Sum_probs=53.4

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ||.|||+ |.+|+.+|..|+..|+. +|.|+|.+.                   .|++..+.-|....+.......... 
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~-   61 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS-   61 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc-
Confidence            7999999 99999999999999985 599998432                   2666666666665433322211111 


Q ss_pred             CcccHHhhcccCcEEEEcCCCh
Q 019513          173 RTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                         +..+.++++|+||.+...+
T Consensus        62 ---~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen   62 ---GDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             ---SSGGGGTTESEEEETTSTS
T ss_pred             ---ccccccccccEEEEecccc
Confidence               2244578999999887664

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.72  E-value=0.0087  Score=53.17  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=56.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|+|+ |++|..+++.|+..| .++++++.+                   ..|++.+.+.+.+.. ...+...
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~   83 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV   83 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence            467899999996 999999999999998 488887633                   235556666554322 2333322


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      + ..+.++..+.++++|+||.++....
T Consensus        84 ~-~~~~~~~~~~~~~~diVi~at~~g~  109 (194)
T cd01078          84 E-TSDDAARAAAIKGADVVFAAGAAGV  109 (194)
T ss_pred             e-CCCHHHHHHHHhcCCEEEECCCCCc
Confidence            1 1123444567789999998886544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.72  E-value=0.011  Score=53.10  Aligned_cols=36  Identities=25%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|+|.|.+|..+++.|...|. ++.++|.+
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            5788999999999999999999999996 67788754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.70  E-value=0.0082  Score=55.99  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHc----CC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAAC----GV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS  158 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~a----Gv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~  158 (340)
                      ++|++.||+++|+|+.|..+++.|..+    |+      ++|.++|.+-+=..+        ..++    -..-+...+.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l----~~~~~~~a~~   88 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDL----NPHKKPFARK   88 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSH----SHHHHHHHBS
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccC----Chhhhhhhcc
Confidence            469999999999999999999999999    99      899999976431110        0111    1112222223


Q ss_pred             hCCCceEEEecccCCcccHHhhcccC--cEEEEcCCChh--hHHHHHHHHHHcCCcEEEEe
Q 019513          159 INSTVHIIEHREALRTSNALEILSQY--EIVVDATDNAP--SRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       159 lnp~v~i~~~~~~~~~~~~~~~l~~~--DlVi~~tD~~~--~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .++....         .++.+.++..  |++|.++.-..  ++.+|...+.....|+|+.-
T Consensus        89 ~~~~~~~---------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~L  140 (255)
T PF03949_consen   89 TNPEKDW---------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPL  140 (255)
T ss_dssp             SSTTT-----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred             Ccccccc---------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEEC
Confidence            3322111         3556677766  99998875333  56677777887888998754

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.66  E-value=0.017  Score=54.54  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=68.9

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHc----CC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAAC----GV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS  158 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~a----Gv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~  158 (340)
                      ++|++.+|+++|+|+.|..+++.|..+    |+      ++|.++|.+-+=..+  |      .++-..|..    ..+.
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~----~a~~   88 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKP----FARK   88 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHH----HHhh
Confidence            578899999999999999999999988    99      799999966431111  1      112122222    2222


Q ss_pred             hCCCceEEEecccCCcccHHhhcc--cCcEEEEcCC--ChhhHHHHHHHHHHcCCcEEEEe
Q 019513          159 INSTVHIIEHREALRTSNALEILS--QYEIVVDATD--NAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       159 lnp~v~i~~~~~~~~~~~~~~~l~--~~DlVi~~tD--~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .++          ....++.+.++  +.|++|.++.  ..-++..|...+.....|+|+.-
T Consensus        89 ~~~----------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL  139 (279)
T cd05312          89 DEE----------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFAL  139 (279)
T ss_pred             cCc----------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence            222          01134566777  7788888875  23456677777777778888753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.65  E-value=0.013  Score=45.73  Aligned_cols=90  Identities=26%  Similarity=0.278  Sum_probs=56.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC--CcEEEE-eCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           95 SILVIGAGGLGSPALLYLAACGV--GRLGIV-DHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv--g~i~lv-D~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ||.|||+|.+|..++..|+..|+  .++.++ +.                      .-+.+ +.+.+..+ +.+      
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~-~~~~~~~~-~~~------   50 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKA-AELAKEYG-VQA------   50 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHH-HHHHHHCT-TEE------
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHH-HHHHHhhc-ccc------
Confidence            68999999999999999999994  344433 32                      12222 22333332 111      


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHH-HHHcCCcEEEEe
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDC-CVVLGKPLVSGA  215 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~-~~~~~~p~i~~~  215 (340)
                       ...+..+.++.+|+||.|+........+.+. ....++-+|+..
T Consensus        51 -~~~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   51 -TADDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA   94 (96)
T ss_dssp             -ESEEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred             -ccCChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence             1123466778899999999987777776666 345667777753

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.63  E-value=0.011  Score=57.24  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++..||.|||+|.+|+.+|..|+..|+..+.|+|-+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~   39 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV   39 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            566899999999999999999999998669999854

>PLN00203 glutamyl-tRNA reductase

Probab=96.57  E-value=0.0075  Score=61.95  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=54.6

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      |.+++|+|||+|.+|..++++|...|+.+|++++.+.                   .|++.+++.+    +.+.+.... 
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~-------------------era~~La~~~----~g~~i~~~~-  319 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE-------------------ERVAALREEF----PDVEIIYKP-  319 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH-------------------HHHHHHHHHh----CCCceEeec-
Confidence            6689999999999999999999999999999986431                   2444444333    233222211 


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                         .++..+.+.++|+||.||....
T Consensus       320 ---~~dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        320 ---LDEMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             ---HhhHHHHHhcCCEEEEccCCCC
Confidence               1234566789999999987654

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.55  E-value=0.011  Score=60.58  Aligned_cols=88  Identities=17%  Similarity=0.163  Sum_probs=72.7

Q ss_pred             HHHHcccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCce
Q 019513           86 EGQSNLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVH  164 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~  164 (340)
                      .-+.-+.+++|+|-|+|| +|+++++.++..+.++|.++|.|                   ++|-..+...|++..|+.+
T Consensus       243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~-------------------E~~~~~i~~el~~~~~~~~  303 (588)
T COG1086         243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRD-------------------EYKLYLIDMELREKFPELK  303 (588)
T ss_pred             HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc-------------------hHHHHHHHHHHHhhCCCcc
Confidence            346779999999999887 89999999999999999998755                   4577788889999999888


Q ss_pred             EEEecccCCc-ccHHhhccc--CcEEEEcCC
Q 019513          165 IIEHREALRT-SNALEILSQ--YEIVVDATD  192 (340)
Q Consensus       165 i~~~~~~~~~-~~~~~~l~~--~DlVi~~tD  192 (340)
                      +..+-.++.+ +.....+.+  .|+|+.+..
T Consensus       304 ~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA  334 (588)
T COG1086         304 LRFYIGDVRDRDRVERAMEGHKVDIVFHAAA  334 (588)
T ss_pred             eEEEecccccHHHHHHHHhcCCCceEEEhhh
Confidence            8888887765 345556666  899998764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.54  E-value=0.0049  Score=61.79  Aligned_cols=75  Identities=25%  Similarity=0.367  Sum_probs=53.1

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.+++|+|+|+|.+|..++.+|...|+.+++++|.+.                   .|+..+++.+   .  ..+..   
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~---g--~~~~~---  232 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEF---G--GEAIP---  232 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHc---C--CcEee---
Confidence            7889999999999999999999999999999987532                   2333333332   1  11111   


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                         .++..+.+.++|+||.||..+.
T Consensus       233 ---~~~~~~~l~~aDvVI~aT~s~~  254 (423)
T PRK00045        233 ---LDELPEALAEADIVISSTGAPH  254 (423)
T ss_pred             ---HHHHHHHhccCCEEEECCCCCC
Confidence               1233456678999999998755

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.52  E-value=0.0097  Score=57.36  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc-eEEEec
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV-HIIEHR  169 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v-~i~~~~  169 (340)
                      +..||.|||+|.+|+.+|..|+..|+- +|.|+|-                   -..|++..+.-|....|.. .+... 
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~-   64 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIY-   64 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEE-
Confidence            346999999999999999999999985 7999974                   2345556666666655422 11111 


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                          ..+ .+.++++|+||.+...
T Consensus        65 ----~~~-~~~~~~adivIitag~   83 (315)
T PRK00066         65 ----AGD-YSDCKDADLVVITAGA   83 (315)
T ss_pred             ----eCC-HHHhCCCCEEEEecCC
Confidence                112 3347899999987665

>PRK04148 hypothetical protein; Provisional

Probab=96.42  E-value=0.025  Score=47.78  Aligned_cols=94  Identities=16%  Similarity=0.213  Sum_probs=67.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++.+|++||+| .|..+|..|+..|. .++.+|-+.                   ..++.++    +..    +.+...+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~~a~----~~~----~~~v~dD   66 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVEKAK----KLG----LNAFVDD   66 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHH----HhC----CeEEECc
Confidence            44789999999 99999999999995 688887432                   2233332    221    2333334


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      +... ..++.+++|+|-.+--.++....|-+.+.+.+.+++-.-
T Consensus        67 lf~p-~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~  109 (134)
T PRK04148         67 LFNP-NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKP  109 (134)
T ss_pred             CCCC-CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence            3322 256678999999888777788889999999999988643

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.37  E-value=0.022  Score=53.16  Aligned_cols=106  Identities=12%  Similarity=0.132  Sum_probs=68.3

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCC----------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVG----------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS  158 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg----------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~  158 (340)
                      ++|++.||+++|+|+.|..+++.|..+|+.          +|.++|.+-+-..+-        .+.-..|... ++   -
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~-~~---~   88 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHL-AR---F   88 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHH-HH---H
Confidence            578999999999999999999999999987          899999664311100        0111111111 11   1


Q ss_pred             hCCCceEEEecccCCcccHHhhcc--cCcEEEEcCCCh--hhHHHHHHHHHHcCCcEEEEe
Q 019513          159 INSTVHIIEHREALRTSNALEILS--QYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       159 lnp~v~i~~~~~~~~~~~~~~~l~--~~DlVi~~tD~~--~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .++.-         ...++.+.++  +.|++|..+..+  -++..|...+.....|+|+.-
T Consensus        89 ~~~~~---------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL  140 (254)
T cd00762          89 ANPER---------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFAL  140 (254)
T ss_pred             cCccc---------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEEC
Confidence            11110         0135666777  788888877632  356677777777788888754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.32  E-value=0.022  Score=54.73  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=51.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC-----CceEEEe
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS-----TVHIIEH  168 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp-----~v~i~~~  168 (340)
                      ||.|||+|.+|+.+|..|+..|+ ++|.|+|-                   -+.|++.-+.-|....+     ++++.. 
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~-   60 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRA-   60 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEE-
Confidence            68999999999999999999998 67999983                   23455555555555433     233332 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCCh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                       .      ..+.++++|+||.+...+
T Consensus        61 -~------~y~~~~~aDivvitaG~~   79 (307)
T cd05290          61 -G------DYDDCADADIIVITAGPS   79 (307)
T ss_pred             -C------CHHHhCCCCEEEECCCCC
Confidence             1      145678999999887753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.29  E-value=0.036  Score=52.29  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=28.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+|+|+|.+|+.++..|+.+| .+++++|.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence            6999999999999999999999 468998863

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.28  E-value=0.017  Score=55.73  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .++.+|.|||+|.+|+.++..|+..|+..|.|+|-+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            467899999999999999999999998889999954

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.28  E-value=0.016  Score=58.67  Aligned_cols=94  Identities=18%  Similarity=0.204  Sum_probs=58.0

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +++++|+|+|+|++|.++|..|...|. +++++|....                  .......+.|++.  .+++..-. 
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~--gv~~~~~~-   71 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEAL--GATVRLGP-   71 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHc--CCEEEECC-
Confidence            567899999999999999999999997 5999885421                  1122344455554  34443211 


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      ...      ....+|+||.++.-.+...++ ..+++.|+|+++
T Consensus        72 ~~~------~~~~~D~Vv~s~Gi~~~~~~~-~~a~~~gi~v~~  107 (480)
T PRK01438         72 GPT------LPEDTDLVVTSPGWRPDAPLL-AAAADAGIPVWG  107 (480)
T ss_pred             Ccc------ccCCCCEEEECCCcCCCCHHH-HHHHHCCCeecc
Confidence            111      235689999887654433222 234555555543

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.26  E-value=0.015  Score=55.29  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=31.5

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD  124 (340)
                      .+++++|+|+|.|+ +|.+++..|...|. ++++++
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~  190 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH  190 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            57899999999999 99999999999998 899875

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.26  E-value=0.04  Score=51.44  Aligned_cols=87  Identities=22%  Similarity=0.319  Sum_probs=56.6

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      -+|+|+|+ |.+|..++..+... ++.-..++|.+.-.   ....                        ....+.     
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~---~~~~------------------------~~~~i~-----   49 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP---LVGQ------------------------GALGVA-----   49 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc---cccc------------------------CCCCcc-----
Confidence            37999999 99999999988764 55556667654310   0000                        000110     


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                       ...+..+++.++|+|||++ ++..-..+...|.+.|+|+|.+
T Consensus        50 -~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig   90 (257)
T PRK00048         50 -ITDDLEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG   90 (257)
T ss_pred             -ccCCHHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE
Confidence             1133455566789999998 4555567788899999999965

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.25  E-value=0.011  Score=59.19  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=33.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+.+++|+|+|+|.+|..++..|...|+ +++++|.|.
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            4689999999999999999999999998 688888654

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.18  E-value=0.075  Score=52.37  Aligned_cols=36  Identities=22%  Similarity=0.391  Sum_probs=32.1

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+..++|+|+|+|.+|..++..|.+.|+ +++++|.+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            3677889999999999999999999998 69999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.16  E-value=0.01  Score=51.40  Aligned_cols=123  Identities=22%  Similarity=0.233  Sum_probs=68.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .+|.+||+|..|+.+|++|+.+|.. +.++|.+.-   ...+.     .+.|-..+...++.+++.  ++-+......-.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~---~~~~~-----~~~g~~~~~s~~e~~~~~--dvvi~~v~~~~~   70 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPE---KAEAL-----AEAGAEVADSPAEAAEQA--DVVILCVPDDDA   70 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHH---HHHHH-----HHTTEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchh---hhhhh-----HHhhhhhhhhhhhHhhcc--cceEeecccchh
Confidence            4799999999999999999999964 778774421   11110     012333344444444443  332322221100


Q ss_pred             -cc-----cHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEe
Q 019513          174 -TS-----NALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN  227 (340)
Q Consensus       174 -~~-----~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~  227 (340)
                       .+     +....+..-++|||++-. +.....+.+.+...|+.+|++...|.     .|.+.++.
T Consensus        71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~  136 (163)
T PF03446_consen   71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMV  136 (163)
T ss_dssp             HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEE
T ss_pred             hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEc
Confidence             00     123333456788887655 44566788888889999998887664     35554443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.15  E-value=0.034  Score=55.58  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +.+++|+|+|+|.+|..+++.+...|+ ++.++|.|.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            678999999999999999999999998 688887553

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.14  E-value=0.026  Score=54.00  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+|.|+|+|.+|+.+|..|+..|. +++++|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3579999999999999999999995 68888865

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.12  E-value=0.027  Score=53.87  Aligned_cols=73  Identities=26%  Similarity=0.349  Sum_probs=52.3

Q ss_pred             EEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC---ceEEEeccc
Q 019513           96 ILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST---VHIIEHREA  171 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~---v~i~~~~~~  171 (340)
                      |.|||+|.+|+.+|..|+..|+ .+|.|+|.+                   +.|++..+..|....+.   +++..    
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~----   57 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR----   57 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence            5799999999999999999997 569999843                   34566666667766543   22221    


Q ss_pred             CCcccHHhhcccCcEEEEcCCCh
Q 019513          172 LRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                       . .+ .+.++++|+||.+...+
T Consensus        58 -~-~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300          58 -G-GD-YADAADADIVVITAGAP   77 (300)
T ss_pred             -C-CC-HHHhCCCCEEEEcCCCC
Confidence             1 11 34678999999988764

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.09  E-value=0.017  Score=56.10  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=33.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|.+++|+|||+|-+|.-++++|...|+.+|++...
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR  206 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR  206 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence            488999999999999999999999999999999753

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.036  Score=52.49  Aligned_cols=42  Identities=24%  Similarity=0.258  Sum_probs=33.1

Q ss_pred             CCHHHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           83 FGVEGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        83 ~G~~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |+......+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r   48 (306)
T PRK06197          6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR   48 (306)
T ss_pred             CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            4444445678899999986 7899999999999997 5666654

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.04  E-value=0.039  Score=50.37  Aligned_cols=39  Identities=28%  Similarity=0.248  Sum_probs=35.4

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..|+.++|+|.|.|.+|..+|+.|...|...+.+.|.+-
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            357899999999999999999999999999999998654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.04  E-value=0.08  Score=52.97  Aligned_cols=96  Identities=13%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +...+|+|+|+|.+|..+++.|...|. .++++|.|.                   .+.    +.+++..+++.+  +..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~-------------------~~~----~~~~~~~~~~~~--i~g  282 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP-------------------ERA----EELAEELPNTLV--LHG  282 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHH----HHHHHHCCCCeE--EEC
Confidence            457899999999999999999999886 578888653                   112    223332233332  222


Q ss_pred             cCCccc-H-HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          171 ALRTSN-A-LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       171 ~~~~~~-~-~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                      +.+... . ...++++|.||.++++......+...+++.+.+.+
T Consensus       283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~i  326 (453)
T PRK09496        283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKV  326 (453)
T ss_pred             CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeE
Confidence            322222 1 12357899999999887776667667777765433

>PLN02602 lactate dehydrogenase

Probab=96.04  E-value=0.02  Score=56.09  Aligned_cols=75  Identities=12%  Similarity=0.277  Sum_probs=52.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC---CceEEEec
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVHIIEHR  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp---~v~i~~~~  169 (340)
                      .||.|||+|.+|+.+|..|+..|+ .+|.|+|-                   -+.|++..+.-|....+   .++|....
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~~   98 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAST   98 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeCC
Confidence            699999999999999999999998 57999984                   22345555555555433   23332211


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                            + .+.++++|+||.+...+
T Consensus        99 ------d-y~~~~daDiVVitAG~~  116 (350)
T PLN02602         99 ------D-YAVTAGSDLCIVTAGAR  116 (350)
T ss_pred             ------C-HHHhCCCCEEEECCCCC
Confidence                  1 33478999999886653

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.02  E-value=0.015  Score=54.90  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++|+|+|+||.+..++..|+..|+.+|+|++.+
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  155 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN  155 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4589999999999999999999999999998754

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.00  E-value=0.035  Score=53.69  Aligned_cols=96  Identities=18%  Similarity=0.157  Sum_probs=65.8

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      -..++|+|+|+|+.|...+..|. ..|+.++.++|.+                   ..|++..++.+.+.. .+++..+ 
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~-  183 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVV-  183 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEe-
Confidence            34678999999999998888775 5689999998643                   246677777776533 2333222 


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                           ++..+.+.++|+|+.||-+..  ..+. .+.+.|..++..+
T Consensus       184 -----~~~~~~~~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~iG  221 (325)
T PRK08618        184 -----NSADEAIEEADIIVTVTNAKT--PVFS-EKLKKGVHINAVG  221 (325)
T ss_pred             -----CCHHHHHhcCCEEEEccCCCC--cchH-HhcCCCcEEEecC
Confidence                 234566789999999998764  3444 5556677665544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.98  E-value=0.02  Score=55.09  Aligned_cols=78  Identities=23%  Similarity=0.195  Sum_probs=56.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +...++|+|+|+|..|...++.+.. .++.+|.+++.+                   ..|++..++.+.+....  +...
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~~--~~~~  180 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGFD--AEVV  180 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCCc--eEEe
Confidence            4456899999999999999987765 688899997532                   35777787777664222  2221


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCCh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                            ++..+.+.++|+|+.||.+.
T Consensus       181 ------~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        181 ------TDLEAAVRQADIISCATLST  200 (314)
T ss_pred             ------CCHHHHHhcCCEEEEeeCCC
Confidence                  33456678999999998864

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.98  E-value=0.035  Score=53.46  Aligned_cols=92  Identities=20%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ...+++++|.|||.|.+|..+|+.|...|+ ++..+|...             .      +.           +.+.  .
T Consensus       131 ~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~-------------~------~~-----------~~~~--~  177 (312)
T PRK15469        131 EYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR-------------K------SW-----------PGVQ--S  177 (312)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC-------------C------CC-----------CCce--e
Confidence            346889999999999999999999999997 466666421             0      00           0000  0


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHH---cCCcEEEEe
Q 019513          168 HREALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVV---LGKPLVSGA  215 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~---~~~p~i~~~  215 (340)
                      +   .......++++.+|+|+.+.. +..++.+++.....   .+.-+|+.+
T Consensus       178 ~---~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        178 F---AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             e---cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence            1   122356678889998887765 46678888753322   344466644

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.98  E-value=0.022  Score=54.89  Aligned_cols=75  Identities=19%  Similarity=0.313  Sum_probs=51.8

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC---ceEEEe
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST---VHIIEH  168 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~---v~i~~~  168 (340)
                      ..||.|||+|.+|+.+|..|+..|.. +|.|+|-.                   ..|++..+.-|....|.   .++...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~   63 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD   63 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence            45899999999999999999999984 69999842                   23455555556655432   233221


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC
Q 019513          169 REALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                            .+ .+.++++|+||.+...
T Consensus        64 ------~d-y~~~~~adivvitaG~   81 (312)
T cd05293          64 ------KD-YSVTANSKVVIVTAGA   81 (312)
T ss_pred             ------CC-HHHhCCCCEEEECCCC
Confidence                  12 2347899999987664

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.98  E-value=0.17  Score=40.60  Aligned_cols=84  Identities=20%  Similarity=0.223  Sum_probs=56.6

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCcc
Q 019513           96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS  175 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~  175 (340)
                      |+|+|.|.+|..+++.|...+ -.+.++|.|.                       ...+.+++..    +..+....+..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~-----------------------~~~~~~~~~~----~~~i~gd~~~~   52 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDP-----------------------ERVEELREEG----VEVIYGDATDP   52 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSH-----------------------HHHHHHHHTT----SEEEES-TTSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCc-----------------------HHHHHHHhcc----cccccccchhh
Confidence            789999999999999999944 5799999764                       1123333332    22344444433


Q ss_pred             cHHh--hcccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513          176 NALE--ILSQYEIVVDATDNAPSRYMISDCCVVL  207 (340)
Q Consensus       176 ~~~~--~l~~~DlVi~~tD~~~~r~~i~~~~~~~  207 (340)
                      +..+  -+++++.||.++++......+...++..
T Consensus        53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~   86 (116)
T PF02254_consen   53 EVLERAGIEKADAVVILTDDDEENLLIALLAREL   86 (116)
T ss_dssp             HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred             hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence            3222  3578999999999888877777777763

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.93  E-value=0.059  Score=52.08  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=54.5

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ...|++++|.|||.|.+|..+|++|..+|+. +.+.|...                    +....   ....  ..++  
T Consensus        11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~~--------------------~s~~~---A~~~--G~~v--   62 (335)
T PRK13403         11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRPG--------------------KSFEV---AKAD--GFEV--   62 (335)
T ss_pred             hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECcc--------------------hhhHH---HHHc--CCEE--
Confidence            4679999999999999999999999999984 55554210                    11000   1111  1211  


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHH
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISD  202 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~  202 (340)
                             .+..+.++.+|+|+.+.-+..++..+++
T Consensus        63 -------~sl~Eaak~ADVV~llLPd~~t~~V~~~   90 (335)
T PRK13403         63 -------MSVSEAVRTAQVVQMLLPDEQQAHVYKA   90 (335)
T ss_pred             -------CCHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence                   1356778899999988877777777664

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.91  E-value=0.056  Score=50.74  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=30.0

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .++++|+|+|+|++|..++..|+..|. +++++|.
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R  148 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANR  148 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            357789999999999999999999996 8888864

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.91  E-value=0.033  Score=52.70  Aligned_cols=32  Identities=34%  Similarity=0.408  Sum_probs=28.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999996 69999854

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.91  E-value=0.032  Score=53.25  Aligned_cols=31  Identities=32%  Similarity=0.499  Sum_probs=27.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            69999999999999999999996 47888764

>PLN02494 adenosylhomocysteinase

Probab=95.89  E-value=0.0099  Score=60.05  Aligned_cols=62  Identities=18%  Similarity=0.234  Sum_probs=41.9

Q ss_pred             CCCHHH-Hhhhh-hhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           65 GLSPDM-IYRYS-RHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        65 ~l~~~e-~~ry~-Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +.+... -+||. ||..+..+=.....-+.+++|+|+|+|.+|..+|+.+...|+ ++.++|.|.
T Consensus       224 s~~K~~fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp  287 (477)
T PLN02494        224 SVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP  287 (477)
T ss_pred             hhhhhhhhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            344442 35777 555431110111123689999999999999999999999998 588887654

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.85  E-value=0.017  Score=44.63  Aligned_cols=39  Identities=28%  Similarity=0.467  Sum_probs=34.7

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..+..++|+|+|+|..|..++.+|...|..++.++|.|.
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi   57 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI   57 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            347889999999999999999999999888999998733

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.85  E-value=0.027  Score=53.64  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5778999999999999999999999997 7888774

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.80  E-value=0.049  Score=52.70  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=56.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ..++|+|+|+|+.|...+..|. ..++.+++|++.+                   ..|++..++.+.+..+ +++...  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~--  185 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAA--  185 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEe--
Confidence            3468999999999999999997 5788999998643                   2477777777765332 333222  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCC
Q 019513          171 ALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                          ++..+.+.++|+|+.||-.
T Consensus       186 ----~~~~~av~~aDiVvtaT~s  204 (326)
T TIGR02992       186 ----TDPRAAMSGADIIVTTTPS  204 (326)
T ss_pred             ----CCHHHHhccCCEEEEecCC
Confidence                3456677899999999876

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.79  E-value=0.087  Score=53.02  Aligned_cols=97  Identities=16%  Similarity=0.076  Sum_probs=58.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ++|+|+|+|+.|..+|..|.+.|. ++++.|.....                  +.......|...  .+++..- ....
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g-~~~~   58 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLG-KPLE   58 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEEC-Cccc
Confidence            479999999999999999999996 68888854321                  122223345443  3444321 1122


Q ss_pred             cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      .+.....+.++|+||....-+.... +-..+++.++|+++
T Consensus        59 ~~~~~~~~~~~d~vv~s~gi~~~~~-~~~~a~~~~i~v~~   97 (459)
T PRK02705         59 LESFQPWLDQPDLVVVSPGIPWDHP-TLVELRERGIEVIG   97 (459)
T ss_pred             hhhhhHHhhcCCEEEECCCCCCCCH-HHHHHHHcCCcEEE
Confidence            2222345678999987655444333 33345667777765

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=95.77  E-value=0.03  Score=51.29  Aligned_cols=81  Identities=27%  Similarity=0.378  Sum_probs=61.0

Q ss_pred             ccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++++++++| +||+|-.+++.|...|+..+.|.|.-.    |                 -.+...|+++||.+++..+.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n-----------------~~a~akL~ai~p~~~v~F~~   61 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N-----------------PEAIAKLQAINPSVSVIFIK   61 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C-----------------HHHHHHHhccCCCceEEEEE
Confidence            5678888884 999999999999999999888865311    1                 34667899999999999988


Q ss_pred             ccCCcc-c-------HHhhcccCcEEEEcCC
Q 019513          170 EALRTS-N-------ALEILSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~-~-------~~~~l~~~DlVi~~tD  192 (340)
                      .+++.. .       ...-+...|++|+-..
T Consensus        62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgAG   92 (261)
T KOG4169|consen   62 CDVTNRGDLEAAFDKILATFGTIDILINGAG   92 (261)
T ss_pred             eccccHHHHHHHHHHHHHHhCceEEEEcccc
Confidence            888752 1       2223466888887643

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.76  E-value=0.15  Score=44.10  Aligned_cols=88  Identities=25%  Similarity=0.281  Sum_probs=56.9

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        96 VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      |+|+|+ |.+|..+++.|...| .+++++=          |.         ..|.+.        .+.+++...+. .+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~~~~~~~~d~-~d~   51 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SPGVEIIQGDL-FDP   51 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CTTEEEEESCT-TCH
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------ccccccceeee-hhh
Confidence            789998 779999999999999 5566532          11         113222        55565543332 233


Q ss_pred             ccHHhhcccCcEEEEcCCChh----hHHHHHHHHHHcCCcEE
Q 019513          175 SNALEILSQYEIVVDATDNAP----SRYMISDCCVVLGKPLV  212 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~----~r~~i~~~~~~~~~p~i  212 (340)
                      +...+.++++|.||.+.....    .-..+-+++.+.+++-+
T Consensus        52 ~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~   93 (183)
T PF13460_consen   52 DSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRV   93 (183)
T ss_dssp             HHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred             hhhhhhhhhcchhhhhhhhhcccccccccccccccccccccc
Confidence            556777889999999986422    22345667777787643

...

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.73  E-value=0.013  Score=49.52  Aligned_cols=90  Identities=20%  Similarity=0.213  Sum_probs=50.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCcc
Q 019513           96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS  175 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~  175 (340)
                      |+|+|+|++|+.+|..|..+|.. +++++... ....+.++-+.-                  ..+.-+......... .
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~~~~g~~~------------------~~~~~~~~~~~~~~~-~   59 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAIKEQGLTI------------------TGPDGDETVQPPIVI-S   59 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHHHHHCEEE------------------EETTEEEEEEEEEEE-S
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhhhheeEEE------------------Eecccceeccccccc-C
Confidence            78999999999999999998854 77766432 111111111100                  001100000000000 0


Q ss_pred             cHHhhcccCcEEEEcCCChhhHHHHHHHHHH
Q 019513          176 NALEILSQYEIVVDATDNAPSRYMISDCCVV  206 (340)
Q Consensus       176 ~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~  206 (340)
                      ........+|+||.|+-.......+..+...
T Consensus        60 ~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~   90 (151)
T PF02558_consen   60 APSADAGPYDLVIVAVKAYQLEQALQSLKPY   90 (151)
T ss_dssp             SHGHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred             cchhccCCCcEEEEEecccchHHHHHHHhhc
Confidence            1123457899999999998888888775433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.73  E-value=0.04  Score=52.17  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999997 699998654

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.71  E-value=0.036  Score=53.63  Aligned_cols=80  Identities=21%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ++-.||+|+|+ |.+|+.++..|+..|. .+|.|+|-+.                     ++.-+.-|...++...+...
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~---------------------~~g~a~Dl~~~~~~~~v~~~   64 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG---------------------APGVAADLSHIDTPAKVTGY   64 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC---------------------CcccccchhhcCcCceEEEe
Confidence            56679999999 9999999999997776 4799998521                     11111122333333333222


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCCh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .   ++.+..+.++++|+||.+...+
T Consensus        65 t---d~~~~~~~l~gaDvVVitaG~~   87 (321)
T PTZ00325         65 A---DGELWEKALRGADLVLICAGVP   87 (321)
T ss_pred             c---CCCchHHHhCCCCEEEECCCCC
Confidence            1   1122256678999999887763

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.69  E-value=0.081  Score=50.81  Aligned_cols=88  Identities=18%  Similarity=0.262  Sum_probs=53.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc---
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE---  170 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~---  170 (340)
                      .||+|+|+|++|+..+..|+++| ..++++-.+.                    +    .+++++-  ...+.....   
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~----~~~l~~~--GL~i~~~~~~~~   53 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------R----LEALKKK--GLRIEDEGGNFT   53 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------H----HHHHHhC--CeEEecCCCccc
Confidence            37999999999999999999999 6666643221                    1    2222222  222222221   


Q ss_pred             -cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513          171 -ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLG  208 (340)
Q Consensus       171 -~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~  208 (340)
                       .....+..+....+|+||.++-+..+...+..+....+
T Consensus        54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~   92 (307)
T COG1893          54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLG   92 (307)
T ss_pred             cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCC
Confidence             01112223445579999999888777777666654443

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.69  E-value=0.1  Score=47.81  Aligned_cols=92  Identities=15%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +..+|.|||+|.+|..++..|...|.   ..+.+++..                  ...|++.+++   +.  .+.+  .
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~---~~--~~~~--~   57 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQA---RY--NVST--T   57 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHH---Hc--CcEE--e
Confidence            45689999999999999999998873   224333311                  0112222221   11  1221  1


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEEE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSG  214 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~~  214 (340)
                            .+..+.++++|+|+.|+-....+..+.+.... .+..+|+.
T Consensus        58 ------~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~   98 (245)
T PRK07634         58 ------TDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTV   98 (245)
T ss_pred             ------CChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEE
Confidence                  12345567899999999877666666655422 34556664

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.67  E-value=0.025  Score=53.86  Aligned_cols=101  Identities=25%  Similarity=0.291  Sum_probs=57.9

Q ss_pred             EEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC--ce--EEEecc
Q 019513           96 ILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST--VH--IIEHRE  170 (340)
Q Consensus        96 VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~--v~--i~~~~~  170 (340)
                      |+|-|+|| +|++++++|++.+..+|.++|.|.                   ++--.+.+.+++..++  +.  +..+..
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E-------------------~~l~~l~~~l~~~~~~~~v~~~~~~vig   61 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDE-------------------NKLYELERELRSRFPDPKVRFEIVPVIG   61 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-H-------------------HHHHHHHHHCHHHC--TTCEEEEE--CT
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCCh-------------------hHHHHHHHHHhhcccccCcccccCceee
Confidence            68888655 899999999999999999998665                   3444555556554443  43  234455


Q ss_pred             cCCc-ccHHhhcc--cCcEEEEcCCChhhH-----------------HHHHHHHHHcCCc-EEEEe
Q 019513          171 ALRT-SNALEILS--QYEIVVDATDNAPSR-----------------YMISDCCVVLGKP-LVSGA  215 (340)
Q Consensus       171 ~~~~-~~~~~~l~--~~DlVi~~tD~~~~r-----------------~~i~~~~~~~~~p-~i~~~  215 (340)
                      ++.+ +....+++  +.|+|+.+...-...                 .-+-++|.++++. +|..+
T Consensus        62 Dvrd~~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~IS  127 (293)
T PF02719_consen   62 DVRDKERLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFIS  127 (293)
T ss_dssp             SCCHHHHHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEE
T ss_pred             cccCHHHHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence            5554 33455666  789999886543221                 1244777777764 44444

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.65  E-value=0.074  Score=49.48  Aligned_cols=89  Identities=24%  Similarity=0.181  Sum_probs=54.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC--CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+|.|||+|.+|+.++..|...|.  ..+.++|.+.                   .+++.    +.+.. .+.+      
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~----~~~~~-g~~~------   52 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAA----LAEEY-GVRA------   52 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHH----HHHhc-CCee------
Confidence            469999999999999999999984  3566665321                   12222    22211 1111      


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                       . .+..+.+.++|+||.|+-....+..+..+....+..+|+.
T Consensus        53 -~-~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~   93 (267)
T PRK11880         53 -A-TDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSI   93 (267)
T ss_pred             -c-CChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEe
Confidence             1 1233456789999999977666666666543334556653

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.60  E-value=0.053  Score=51.98  Aligned_cols=78  Identities=21%  Similarity=0.219  Sum_probs=57.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +...++|+|+|+|..|...++.|.. .++.++.++|.+                   ..|++..++.+...+.  .+.  
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~--  178 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE--  178 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--
Confidence            4456899999999999999999975 688889987643                   3577788887765422  222  


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                           ..+..+.+.++|+|+.||-+..
T Consensus       179 -----~~~~~~av~~aDiVitaT~s~~  200 (304)
T PRK07340        179 -----PLDGEAIPEAVDLVVTATTSRT  200 (304)
T ss_pred             -----ECCHHHHhhcCCEEEEccCCCC
Confidence                 1344567789999999988643

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.59  E-value=0.047  Score=52.17  Aligned_cols=36  Identities=25%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+++|+|+|+|++|..++..|.+.|. +++++|.+
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4578999999999999999999999997 89988754

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.55  E-value=0.081  Score=52.77  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +.+++|+|+|+|.+|..++..|...|. ++.++|.|.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            689999999999999999999999998 588887654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.54  E-value=0.049  Score=51.91  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEeccc-C
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L  172 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~-~  172 (340)
                      +|.|||+|.+|+.++.+|+..|. ++.++|.+.-....+        .+.|..-+....+.+... ++++-+...+.. .
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~   72 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEEGATGADSLEELVAKLPAPRVVWLMVPAGEI   72 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence            69999999999999999999995 588888653111111        011222222333333332 355544444432 1


Q ss_pred             Ccc---cHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          173 RTS---NALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       173 ~~~---~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ..+   .....+..-++||+++.. +.....+.+.+...|+.++++...|.
T Consensus        73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~  123 (301)
T PRK09599         73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG  123 (301)
T ss_pred             HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence            111   122334556789998654 43444567788889999998765553

>PRK09242 tropinone reductase; Provisional

Probab=95.54  E-value=0.1  Score=47.76  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++++|.|+ |++|..+++.|+..|. ++.+++.+.                   .+.+.+.+.+...+|..++..+
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   65 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA-------------------DALAQARDELAEEFPEREVHGL   65 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEEEE
Confidence            367889999986 6799999999999996 577776421                   2445566667666777777777


Q ss_pred             cccCCccc--------HHhhcccCcEEEEcCCC
Q 019513          169 REALRTSN--------ALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~--------~~~~l~~~DlVi~~tD~  193 (340)
                      ..++....        ..+.+...|+||.+...
T Consensus        66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~   98 (257)
T PRK09242         66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAGG   98 (257)
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            66665422        12233568999888753

>PRK07680 late competence protein ComER; Validated

Probab=95.49  E-value=0.11  Score=48.83  Aligned_cols=90  Identities=18%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           95 SILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +|.|||+|.+|+.++..|...|.   ..+.++|.+.                   .++    +.+.+..+.+.+.     
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~~-----   53 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHVA-----   53 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEEE-----
Confidence            59999999999999999999984   4567765431                   112    2222222222211     


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEEe
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSGA  215 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~~  215 (340)
                         .+..+.+.++|+||.|+-.......+.++...  .+..+|+..
T Consensus        54 ---~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~   96 (273)
T PRK07680         54 ---KTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSIT   96 (273)
T ss_pred             ---CCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence               12334567789999888654445555554322  244455543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.48  E-value=0.08  Score=50.49  Aligned_cols=32  Identities=28%  Similarity=0.481  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999996 68888854

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.47  E-value=0.032  Score=53.21  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .||.|||+|.+|+.+|..|+..|.+++.|+|.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            58999999999999999999998669999986

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.45  E-value=0.046  Score=52.64  Aligned_cols=87  Identities=20%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|++++|.|||.|.+|..+|+.|...|.. +..+|...             ..+..                       
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~-------------~~~~~-----------------------  185 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKG-------------ASVCR-----------------------  185 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCc-------------ccccc-----------------------
Confidence            469999999999999999999999988874 55444210             00000                       


Q ss_pred             cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~  215 (340)
                         .......++++.+|+|+.+.- +..++.+|+......   +.-+|+.+
T Consensus       186 ---~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a  233 (314)
T PRK06932        186 ---EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG  233 (314)
T ss_pred             ---cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence               001235677888998877654 577888888655443   44466644

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.42  E-value=0.078  Score=52.21  Aligned_cols=102  Identities=12%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--C---
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--N---  160 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--n---  160 (340)
                      +..+|.|+|+|+.|+.+|..|+..|.      .++.|+..|..-              -++    ...+.+++-  |   
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~----~~~~~in~~~~N~~y   71 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGE----KLSDIINTKHENVKY   71 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cch----HHHHHHHhcCCCccc
Confidence            34689999999999999999999884      356666443210              011    122222221  1   


Q ss_pred             -CCceEEEecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHH----HcCCcEEEE
Q 019513          161 -STVHIIEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCV----VLGKPLVSG  214 (340)
Q Consensus       161 -p~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~----~~~~p~i~~  214 (340)
                       |.++.   +..+. ..+..+.++++|+||.++-+...+..+.+...    ..+.++|+.
T Consensus        72 lp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~  128 (365)
T PTZ00345         72 LPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISL  128 (365)
T ss_pred             CCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEE
Confidence             22221   11121 13345677899999999998888877776643    223456664

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.41  E-value=0.21  Score=47.93  Aligned_cols=79  Identities=19%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcC-CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +++++|+|.|+ |++|+.+++.|+..| ..++.++|.+..                   +...+...+    +...+..+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~~----~~~~~~~v   58 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQKF----PAPCLRFF   58 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHHh----CCCcEEEE
Confidence            46788999986 779999999999987 457888774421                   111111111    11234444


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCC
Q 019513          169 REALRT-SNALEILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD  192 (340)
                      ..++.. +...+.++++|+||.+..
T Consensus        59 ~~Dl~d~~~l~~~~~~iD~Vih~Ag   83 (324)
T TIGR03589        59 IGDVRDKERLTRALRGVDYVVHAAA   83 (324)
T ss_pred             EccCCCHHHHHHHHhcCCEEEECcc
Confidence            444443 344556677898888754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02427 UDP-apiose/xylose synthase

Probab=95.38  E-value=0.12  Score=50.72  Aligned_cols=114  Identities=15%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      +.++..+|+|.|+ |-+|+.+++.|...|--++..+|...-   .+. +. ..   .+.          ....+.  ++.
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~---~~~-~l-~~---~~~----------~~~~~~--~~~   69 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND---KIK-HL-LE---PDT----------VPWSGR--IQF   69 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch---hhh-hh-hc---ccc----------ccCCCC--eEE
Confidence            4567788999996 669999999999985236777764210   000 00 00   000          000112  334


Q ss_pred             ecccCCc-ccHHhhcccCcEEEEcCCChh---------h--------HHHHHHHHHHcCCcEEEEeecCceeE
Q 019513          168 HREALRT-SNALEILSQYEIVVDATDNAP---------S--------RYMISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       168 ~~~~~~~-~~~~~~l~~~DlVi~~tD~~~---------~--------r~~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                      +..++.. +...+.++++|+||.+.....         .        -..+-++|+..++.+|..++...+|.
T Consensus        70 ~~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~  142 (386)
T PLN02427         70 HRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK  142 (386)
T ss_pred             EEcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCC
Confidence            4444443 334566778899998764210         0        01133566777788988877665553

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.34  E-value=0.11  Score=50.62  Aligned_cols=97  Identities=18%  Similarity=0.254  Sum_probs=59.5

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ...+|+|+|+|.+|--++..+...|..+|.++|.+.                   .|.+.|++..-     ..+......
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~g-----~~~~~~~~~  223 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAGG-----ADVVVNPSE  223 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhCC-----CeEeecCcc
Confidence            334899999999999999999999999999997543                   23333332111     111111100


Q ss_pred             -CCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          172 -LRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       172 -~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                       .......+.-  ..+|+||+|+.+..+.....++++..|.-.+
T Consensus       224 ~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~  267 (350)
T COG1063         224 DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVV  267 (350)
T ss_pred             ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence             0011112222  3599999999987766666666666665333

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.33  E-value=0.052  Score=51.70  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEecccCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~~~  173 (340)
                      +|.|||+|.+|+.++.+|+..|. ++.++|.+.-...-+...        |...+....+....+ .+++-+...+....
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~   72 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV   72 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence            69999999999999999999994 577787654221111111        111111112222221 34544444443322


Q ss_pred             cc---cHHhhcccCcEEEEcCCCh-hhHHHHHHHHHHcCCcEEEEeecC
Q 019513          174 TS---NALEILSQYEIVVDATDNA-PSRYMISDCCVVLGKPLVSGAALG  218 (340)
Q Consensus       174 ~~---~~~~~l~~~DlVi~~tD~~-~~r~~i~~~~~~~~~p~i~~~~~g  218 (340)
                      .+   .....+..=++|||++... ..-..+...+...+++++.+...|
T Consensus        73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG  121 (298)
T TIGR00872        73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG  121 (298)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence            21   1223344557999987664 334445556677889999877665

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.33  E-value=0.091  Score=43.09  Aligned_cols=91  Identities=16%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcC-CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC----CceEEEe
Q 019513           95 SILVIG-AGGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIEH  168 (340)
Q Consensus        95 ~VlVvG-~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp----~v~i~~~  168 (340)
                      ||.||| .|-+|.++++.|...- +.-+.++....               ..|+.        +....|    ...+...
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~--------~~~~~~~~~~~~~~~~~   57 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKP--------LSEVFPHPKGFEDLSVE   57 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSB--------HHHTTGGGTTTEEEBEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCe--------eehhccccccccceeEe
Confidence            699999 6779999999999832 22233332211               14442        222222    1111111


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .  .    ..+.+.+.|+||.|+++...+.+...+ .+.|+++|+.+
T Consensus        58 ~--~----~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s   97 (121)
T PF01118_consen   58 D--A----DPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS   97 (121)
T ss_dssp             E--T----SGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred             e--c----chhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence            1  1    133458999999999987666655554 88899999854

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.32  E-value=0.12  Score=48.11  Aligned_cols=88  Identities=13%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +|.|||+|-+|..+++.|...|..  .+.+.|.+                   ..|++    .+.+..+.+.+.      
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~-------------------~~~~~----~l~~~~~~~~~~------   52 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN-------------------AQIAA----RLAERFPKVRIA------   52 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC-------------------HHHHH----HHHHHcCCceEe------
Confidence            699999999999999999998853  23333211                   11222    233322322221      


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                        .+..+.++++|+|+.|+-.......+.......+..+|+
T Consensus        53 --~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis   91 (258)
T PRK06476         53 --KDNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS   91 (258)
T ss_pred             --CCHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence              123445677999999988544555555443334555666

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.32  E-value=0.2  Score=48.26  Aligned_cols=102  Identities=12%  Similarity=0.088  Sum_probs=59.4

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|+|.|+ |-+|+.+++.|...|=-++..+|...-                   +       +..+.+.-.++.+..++
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~-------------------~-------~~~~~~~~~~~~~~~Dl   55 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD-------------------R-------LGDLVNHPRMHFFEGDI   55 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH-------------------H-------HHHhccCCCeEEEeCCC
Confidence            36999997 669999999999863236777663210                   0       11111211234444455


Q ss_pred             C-c-ccHHhhcccCcEEEEcCCC--h-------h--------hHHHHHHHHHHcCCcEEEEeecCcee
Q 019513          173 R-T-SNALEILSQYEIVVDATDN--A-------P--------SRYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       173 ~-~-~~~~~~l~~~DlVi~~tD~--~-------~--------~r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      . + +...+.++++|+||.+...  +       .        .-..+-++|++.+..+|..++...+|
T Consensus        56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg  123 (347)
T PRK11908         56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG  123 (347)
T ss_pred             CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence            3 2 2334566788999976421  1       1        01124567777888899877665554

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.13  Score=47.17  Aligned_cols=83  Identities=18%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|+++.++|.|+ ||+|.++++.|+..|.. +.+++.+.                   .+.+.+.+.+.+..+..++..+
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   64 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAA   64 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEE
Confidence            367889999997 56999999999999974 77766432                   2445556666666666666666


Q ss_pred             cccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          169 REALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      ..+++... .       .+.+...|+||.+..
T Consensus        65 ~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag   96 (265)
T PRK07062         65 RCDVLDEADVAAFAAAVEARFGGVDMLVNNAG   96 (265)
T ss_pred             EecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            66665432 1       122346799988765

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.31  E-value=0.036  Score=46.33  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=49.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ..-+|.|||+|-+|..+++.|..+|.. |.-|               +.       +....++++...-+...+.     
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~-----   60 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHE-VVGV---------------YS-------RSPASAERAAAFIGAGAIL-----   60 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------------SS-------CHH-HHHHHHC--TT---------
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------------Ee-------CCccccccccccccccccc-----
Confidence            345799999999999999999999953 3322               11       1223444444444444321     


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH----cCCcEEEEe
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV----LGKPLVSGA  215 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~----~~~p~i~~~  215 (340)
                          +..+.+..+|+||.++-+-.......+++..    .+.-+++++
T Consensus        61 ----~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   61 ----DLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             -----TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-
T ss_pred             ----ccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECC
Confidence                2235567899999888665655555555433    344455543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.30  E-value=0.14  Score=52.08  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +....+.+++|+|+|+|+.|..++..|...|. .+++.|.
T Consensus         8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~   46 (473)
T PRK00141          8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD   46 (473)
T ss_pred             hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            44455777899999999999999999999998 7888774

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.28  E-value=0.099  Score=50.74  Aligned_cols=78  Identities=15%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|++++|.|||+|.+|..+|.+|..+|+ ++.+.+...                   .|....   ..+.  .+.+   
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s~~~---A~~~--G~~~---   64 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKSWKK---AEAD--GFEV---   64 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhhHHH---HHHC--CCee---
Confidence            45888999999999999999999999998 455444211                   011111   1111  1211   


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHH
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMI  200 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i  200 (340)
                            .+..+.++.+|+|+.++-+...+..+
T Consensus        65 ------~s~~eaa~~ADVVvLaVPd~~~~~V~   90 (330)
T PRK05479         65 ------LTVAEAAKWADVIMILLPDEVQAEVY   90 (330)
T ss_pred             ------CCHHHHHhcCCEEEEcCCHHHHHHHH
Confidence                  13456778899999998866665555

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.26  E-value=0.19  Score=47.96  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      ..+|+|||+|.+|..++..|...|. .++.++|.+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            3579999999999999999999997 478888754

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.095  Score=48.49  Aligned_cols=35  Identities=29%  Similarity=0.424  Sum_probs=29.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r   39 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR   39 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence            467899999997 7899999999999997 5777764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.24  E-value=0.1  Score=55.21  Aligned_cols=124  Identities=15%  Similarity=0.174  Sum_probs=65.2

Q ss_pred             CCCCHHHHhhhhhhccCC-CCCHH-HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccC-
Q 019513           64 YGLSPDMIYRYSRHLLLP-SFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT-  140 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~-~~G~~-~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~-  140 (340)
                      .+++=..++||--...+. .|... .+..-.+++|+|||+|..|-.+|.+|++.|.. ++|+|.+.    .++-+..+. 
T Consensus       296 ~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~~----~~GG~l~~gi  370 (654)
T PRK12769        296 GAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRHP----EIGGLLTFGI  370 (654)
T ss_pred             CCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC----CCCceeeecC
Confidence            356666667775332210 01110 11123578999999999999999999999975 99998642    222221111 


Q ss_pred             -CCccCcccHHHHHHHHHhhCCCceEEEecccCC-cccHHhhcccCcEEEEcCCChh
Q 019513          141 -EPYIGQSKVKSAAATCRSINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       141 -~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                       ...+.+...+...+.++++.  +++.... .+. .-...++...||.||.++....
T Consensus       371 p~~~l~~~~~~~~~~~~~~~G--v~~~~~~-~v~~~i~~~~~~~~~DavilAtGa~~  424 (654)
T PRK12769        371 PAFKLDKSLLARRREIFSAMG--IEFELNC-EVGKDISLESLLEDYDAVFVGVGTYR  424 (654)
T ss_pred             CCccCCHHHHHHHHHHHHHCC--eEEECCC-EeCCcCCHHHHHhcCCEEEEeCCCCC
Confidence             11122222222233344432  3332211 111 1122334467999999998754

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.24  E-value=0.19  Score=47.17  Aligned_cols=32  Identities=16%  Similarity=0.227  Sum_probs=25.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcC--CCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACG--VGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aG--vg~i~lvD~D  126 (340)
                      +|.|||+|.+|..++..|...+  +.-+.++|.+
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~   36 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN   36 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence            7999999999999999998764  3345556644

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.23  E-value=0.069  Score=51.08  Aligned_cols=32  Identities=31%  Similarity=0.444  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|+|+|+|++|+.++-+|+++|. .+++++..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            479999999999999999999995 68888864

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.23  E-value=0.17  Score=50.78  Aligned_cols=94  Identities=16%  Similarity=0.232  Sum_probs=58.1

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.+++|+|+|.|+.|..+|+.|+..|. ++++.|.+...                  .   ....|.+....+.+..  .
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~------------------~---~~~~l~~~~~gi~~~~--g   58 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP------------------E---RVAQIGKMFDGLVFYT--G   58 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc------------------h---hHHHHhhccCCcEEEe--C
Confidence            467899999999999999999999996 57888854311                  0   0122433223344322  1


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      ...    ...+.++|+||....-++.... -..+++.++|+++
T Consensus        59 ~~~----~~~~~~~d~vv~spgi~~~~p~-~~~a~~~~i~v~~   96 (445)
T PRK04308         59 RLK----DALDNGFDILALSPGISERQPD-IEAFKQNGGRVLG   96 (445)
T ss_pred             CCC----HHHHhCCCEEEECCCCCCCCHH-HHHHHHcCCcEEE
Confidence            111    2234679999987765544333 3345667777764

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.21  E-value=0.083  Score=50.86  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=28.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|+|+|.+|+.++..|++.|. +++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            379999999999999999999994 58888764

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.19  E-value=0.11  Score=50.51  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=59.1

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|...-                   +.   ...       .+    
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~---~~~-------~~----  187 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KD---LDF-------LT----  187 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hh---hhh-------hh----
Confidence            46899999999999999999999999996 5777774320                   00   000       00    


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChh-hHHHHHHHHHH---cCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAP-SRYMISDCCVV---LGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~-~r~~i~~~~~~---~~~p~i~~~  215 (340)
                         . ..+..+.++.+|+|+.+.-..+ ++..+++....   .+..+|+.+
T Consensus       188 ---~-~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a  234 (330)
T PRK12480        188 ---Y-KDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA  234 (330)
T ss_pred             ---c-cCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence               0 1235677889999888876544 56667654333   345566654

>PLN02240 UDP-glucose 4-epimerase

Probab=95.17  E-value=0.24  Score=47.53  Aligned_cols=33  Identities=36%  Similarity=0.631  Sum_probs=28.2

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      |++++|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~   36 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID   36 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            56789999986 7799999999999995 677776

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.17  E-value=0.027  Score=54.79  Aligned_cols=37  Identities=38%  Similarity=0.630  Sum_probs=32.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D  126 (340)
                      .|++++|+|+|+ |.+|+.+++.|+. .|+.++.+++.+
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~  190 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ  190 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence            588999999999 7899999999985 589999998643

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.17  E-value=0.021  Score=50.22  Aligned_cols=94  Identities=22%  Similarity=0.205  Sum_probs=58.7

Q ss_pred             HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      ....|.+++|.|+|.|.+|..+|+.|...|. ++..+|...-..                    .   .....       
T Consensus        30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~--------------------~---~~~~~-------   78 (178)
T PF02826_consen   30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPE--------------------E---GADEF-------   78 (178)
T ss_dssp             TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHH--------------------H---HHHHT-------
T ss_pred             CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChh--------------------h---hcccc-------
Confidence            3457899999999999999999999999998 688877543211                    0   01110       


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513          167 EHREALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA  215 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~  215 (340)
                          .+......++++.+|+|+.+.- +..++.+|++.....   +.-+|+.+
T Consensus        79 ----~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a  127 (178)
T PF02826_consen   79 ----GVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA  127 (178)
T ss_dssp             ----TEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred             ----cceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEecc
Confidence                1112345677888998877765 456777777654433   33455543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.17  E-value=0.12  Score=52.15  Aligned_cols=96  Identities=14%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      -+.+++|+|+|.|..|..+|+.|...|. .+++.|.+.-+                  +.....+.|.+.  .+.+..  
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~--   67 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE------------------ELGEVSNELKEL--GVKLVL--   67 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc------------------cchHHHHHHHhC--CCEEEe--
Confidence            4557899999999999999999999996 68888854310                  000111224333  233321  


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      ....    .+.+.++|+||....-++... +-..+++.++|+++
T Consensus        68 ~~~~----~~~~~~~dlVV~Spgi~~~~p-~~~~a~~~~i~i~s  106 (458)
T PRK01710         68 GENY----LDKLDGFDVIFKTPSMRIDSP-ELVKAKEEGAYITS  106 (458)
T ss_pred             CCCC----hHHhccCCEEEECCCCCCCch-HHHHHHHcCCcEEe
Confidence            1111    233577999998755444333 34456778888875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.15  E-value=0.13  Score=52.44  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++++|+|+|.|+.|..+|+.|...|. +++..|..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   39 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR   39 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence            467889999999999999999999997 58887743

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.14  E-value=0.048  Score=52.46  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=57.2

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||.|.+|..+|+.|...|. ++..+|.-..            ..+.+                 +     
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~------------~~~~~-----------------~-----  185 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGK------------NKNEE-----------------Y-----  185 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCcc------------ccccC-----------------c-----
Confidence            47999999999999999999999998886 4666664110            00000                 0     


Q ss_pred             cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~  215 (340)
                          ......++++.+|+|+.+.- +.+++.+|++.....   +.-+|+.+
T Consensus       186 ----~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~a  232 (311)
T PRK08410        186 ----ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG  232 (311)
T ss_pred             ----eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECC
Confidence                11235667788887766654 466788887665443   33456543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.14  E-value=0.24  Score=44.97  Aligned_cols=97  Identities=22%  Similarity=0.171  Sum_probs=55.3

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|.||| +|.+|+.++..|+..| .++.++|.+                   ..|++.+.+..........+   ...+.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~---~~~~~   58 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGS---DIKVT   58 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCC---CceEE
Confidence            699997 8999999999999999 567776532                   12333333322211110000   00001


Q ss_pred             cccHHhhcccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEEE
Q 019513          174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSG  214 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~~  214 (340)
                      ..+..+.++.+|+||.|+-....+..+.++... .++.+|+.
T Consensus        59 ~~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~  100 (219)
T TIGR01915        59 GADNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISP  100 (219)
T ss_pred             EeChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEe
Confidence            112245567899999998877666666554322 23445543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.14  E-value=0.033  Score=52.91  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|||+|..|+.+|..|+.+|. .++++|.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            489999999999999999999996 599998653

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.13  E-value=0.2  Score=48.68  Aligned_cols=102  Identities=16%  Similarity=0.186  Sum_probs=57.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .+|.|+|+|.+|+.++..|+..|  ++.++..+.-....++..... ....+..         ..+.+.+.       .+
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~-~~~l~~~---------~~l~~~i~-------~t   68 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHRN-SRYLGND---------VVLSDTLR-------AT   68 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCC-cccCCCC---------cccCCCeE-------EE
Confidence            57999999999999999999998  456654432111111111000 0001000         00001111       11


Q ss_pred             cccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEEe
Q 019513          174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSGA  215 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~~  215 (340)
                       .+..+.++++|+||.|+-+...+..+.++...  .+.++|+..
T Consensus        69 -~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~  111 (341)
T PRK12439         69 -TDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV  111 (341)
T ss_pred             -CCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE
Confidence             23345578899999999988888777766543  344566643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.11  E-value=0.075  Score=50.31  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -++|.|||+|..|+.+|..|+.+|. .++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3689999999999999999999996 68888854

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.11  E-value=0.042  Score=41.53  Aligned_cols=54  Identities=20%  Similarity=0.279  Sum_probs=38.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN  160 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln  160 (340)
                      ||+|||.|.+|+++|..|+..|. +++|++...-        ++   ......=.+.+.+.+++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~~~~~~~~~~~~l~~~g   54 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGFDPDAAKILEEYLRKRG   54 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTSSHHHHHHHHHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhcCHHHHHHHHHHHHHCC
Confidence            68999999999999999999994 7888875431        11   1233444556667777764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.07  E-value=0.08  Score=50.44  Aligned_cols=116  Identities=17%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEeccc-C
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L  172 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~-~  172 (340)
                      +|.|||+|.+|..++.+|+..|. .+.++|.+.-...     .+   ...|...+....+.+++. ++++-+...+.. .
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~-----~~---~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~   72 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVD-----VA---GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV   72 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHH-----HH---HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence            69999999999999999999996 5778876531100     00   012322233333333332 134444443332 1


Q ss_pred             CcccHHh---hcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          173 RTSNALE---ILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       173 ~~~~~~~---~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ..+-...   .+..=.+|||++.. +..-..+.+.+...++.++++...|.
T Consensus        73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~  123 (299)
T PRK12490         73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG  123 (299)
T ss_pred             HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence            1111112   23344689988544 44555566777788888988665544

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.05  E-value=0.09  Score=50.44  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=29.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      +|.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            69999999999999999999996 779999853

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.05  E-value=0.068  Score=50.80  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=54.8

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|||.|. +|.+++..|...|. ++++++..+                                         
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t-----------------------------------------  192 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS-----------------------------------------  192 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc-----------------------------------------
Confidence            58999999999999 99999999999984 577665210                                         


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                            .+..+.++.+|+||.++..+.   .+...-.+.+.-+|+.+.
T Consensus       193 ------~~l~~~~~~ADIVIsAvg~p~---~i~~~~vk~gavVIDvGi  231 (286)
T PRK14175        193 ------KDMASYLKDADVIVSAVGKPG---LVTKDVVKEGAVIIDVGN  231 (286)
T ss_pred             ------hhHHHHHhhCCEEEECCCCCc---ccCHHHcCCCcEEEEcCC
Confidence                  234566788999999998754   233323445666666654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.00  E-value=0.064  Score=50.50  Aligned_cols=33  Identities=33%  Similarity=0.375  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence            479999999999999999999997 788888553

>PRK08291 ectoine utilization protein EutC; Validated

Probab=94.98  E-value=0.13  Score=49.88  Aligned_cols=76  Identities=22%  Similarity=0.234  Sum_probs=54.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .++|+|+|+|+.|...+..|.. .|+.++.+++.+                   ..|++..++.+++.. .+++..+   
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~---  188 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVA---  188 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEe---
Confidence            4689999999999999999985 578999998643                   236777777776432 2333222   


Q ss_pred             CCcccHHhhcccCcEEEEcCCCh
Q 019513          172 LRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                         ++..+.+.++|+|+.||-..
T Consensus       189 ---~d~~~al~~aDiVi~aT~s~  208 (330)
T PRK08291        189 ---RDVHEAVAGADIIVTTTPSE  208 (330)
T ss_pred             ---CCHHHHHccCCEEEEeeCCC
Confidence               23456678899999998653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.98  E-value=0.18  Score=48.53  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..+.+|+|.|+|++|..++..+...|+.++.++|.
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~  202 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV  202 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence            35789999999999999999999999988888764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.96  E-value=0.096  Score=49.79  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=30.0

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+..+|+|+|+|++|..++..+...|+..+.++|.
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            35678999999999999999888899988887764

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.96  E-value=0.21  Score=48.24  Aligned_cols=101  Identities=21%  Similarity=0.212  Sum_probs=62.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC-
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL-  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~-  172 (340)
                      .+|.|+|+|+.|+.+|..|+..| ..+.+...|.-....++...  .               -.+.-|++.   .+..+ 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~--~---------------N~~yLp~i~---lp~~l~   60 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETR--E---------------NPKYLPGIL---LPPNLK   60 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcC--c---------------CccccCCcc---CCcccc
Confidence            57999999999999999999999 66777665432111111110  0               000111111   11111 


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHH--HHcCCcEEEEe
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCC--VVLGKPLVSGA  215 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~--~~~~~p~i~~~  215 (340)
                      ...+..+.++++|+||.++-+...|..+....  ...+.++|++.
T Consensus        61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          61 ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             cccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence            12456777888999999998888887777652  34566677653

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.94  E-value=0.042  Score=52.83  Aligned_cols=32  Identities=38%  Similarity=0.608  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~  125 (340)
                      .||.|+|+|.+|+.+|..|+.-+++ .+.|+|-
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi   33 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI   33 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence            4799999999999999999999999 9999984

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.92  E-value=0.16  Score=48.39  Aligned_cols=64  Identities=25%  Similarity=0.243  Sum_probs=43.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ +|+|.++++.|++.|. ++.+++.+.                   .|.+.+.+.|.+.++..++..+
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~   70 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLR   70 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEE
Confidence            366788999985 5699999999999995 577765331                   2455555666666665555555


Q ss_pred             cccCC
Q 019513          169 REALR  173 (340)
Q Consensus       169 ~~~~~  173 (340)
                      ..++.
T Consensus        71 ~~Dl~   75 (313)
T PRK05854         71 ALDLS   75 (313)
T ss_pred             EecCC
Confidence            55554

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.92  E-value=0.12  Score=50.12  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=29.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|||+|.+|+.+|..++.+|. .++++|.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            579999999999999999999995 488888653

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=94.91  E-value=0.1  Score=50.67  Aligned_cols=84  Identities=17%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      -..+.+++|.|+|+|.+|..+|+.|-..| ..|. ...         |+        .. .-+.+.+...+         
T Consensus       157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~-y~~---------r~--------~~-~~~~~~~~~~~---------  207 (336)
T KOG0069|consen  157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVIL-YHS---------RT--------QL-PPEEAYEYYAE---------  207 (336)
T ss_pred             cccccCCEEEEecCcHHHHHHHHhhhhcc-ceee-eec---------cc--------CC-chhhHHHhccc---------
Confidence            46889999999999999999999999966 3333 221         10        00 01111111111         


Q ss_pred             ecccCCcccHHhhcccCcE-EEEcCCChhhHHHHHHHHHH
Q 019513          168 HREALRTSNALEILSQYEI-VVDATDNAPSRYMISDCCVV  206 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~Dl-Vi~~tD~~~~r~~i~~~~~~  206 (340)
                            ..+..+.+.+.|+ ||.|..+..++.++|.....
T Consensus       208 ------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~  241 (336)
T KOG0069|consen  208 ------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIE  241 (336)
T ss_pred             ------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHH
Confidence                  2345667788885 56667888999999976433

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.90  E-value=0.089  Score=50.72  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=28.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|+|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            479999999999999999999995 58888854

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.90  E-value=0.25  Score=49.48  Aligned_cols=91  Identities=15%  Similarity=0.260  Sum_probs=57.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|+|+|+|.+|..+++.|...|. .+.++|.+.                   .+++.+    ++ ...  +..+....+.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~-------------------~~~~~~----~~-~~~--~~~~~gd~~~   54 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE-------------------ERLRRL----QD-RLD--VRTVVGNGSS   54 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH-------------------HHHHHH----Hh-hcC--EEEEEeCCCC
Confidence            79999999999999999999996 577887543                   122222    21 112  2233333332


Q ss_pred             -ccHHhh-cccCcEEEEcCCChhhHHHHHHHHHHc-CCcEE
Q 019513          175 -SNALEI-LSQYEIVVDATDNAPSRYMISDCCVVL-GKPLV  212 (340)
Q Consensus       175 -~~~~~~-l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i  212 (340)
                       ....+. +.++|.||.++++...-..+...++.. +.+.+
T Consensus        55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~i   95 (453)
T PRK09496         55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTT   95 (453)
T ss_pred             HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeE
Confidence             222333 578999999998877766666667665 54443

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.89  E-value=0.26  Score=46.40  Aligned_cols=90  Identities=17%  Similarity=0.155  Sum_probs=55.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           95 SILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +|.|||+|.+|..++..|...|.   .++.++|.+.-                  .|.    +.+....+.+.+      
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~------   54 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVEL------   54 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEE------
Confidence            69999999999999999999983   46777664310                  111    112222222221      


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG  214 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~  214 (340)
                       . .+..+.+.++|+||.|+-....+..+.++..  ..++.+|+.
T Consensus        55 -~-~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~   97 (277)
T PRK06928         55 -A-DNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSI   97 (277)
T ss_pred             -e-CCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence             1 2233456789999999886666666665532  245567764

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.89  E-value=0.22  Score=47.95  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=59.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ..++|+|+|+|++|-....-+-..|..+|.++|-.                   .+|.+.|++    +.-.+........
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~-------------------~~Rle~Ak~----~Ga~~~~~~~~~~  225 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV-------------------ANRLELAKK----FGATVTDPSSHKS  225 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC-------------------HHHHHHHHH----hCCeEEeeccccc
Confidence            56899999999999999999999999999998743                   234444443    1111111111111


Q ss_pred             CCcccHHhhc------ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          172 LRTSNALEIL------SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       172 ~~~~~~~~~l------~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                       ..+...+.+      ..+|+.++|+....+-..--.+.+..|+ ++-++
T Consensus       226 -~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt-~vlvg  273 (354)
T KOG0024|consen  226 -SPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGT-VVLVG  273 (354)
T ss_pred             -cHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCE-EEEec
Confidence             111111211      3489999999976654443445566666 44433

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.88  E-value=0.13  Score=53.37  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      -.+++|+|||+|..|-.+|..|++.|. +++++|...
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~  170 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP  170 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            357899999999999999999999998 599998543

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=94.87  E-value=0.19  Score=46.21  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=33.9

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..|+.++|+|.|.|.+|..+++.|...|+.-+.+.|.+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            56899999999999999999999999998877788764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=94.86  E-value=0.24  Score=48.36  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=60.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      +|.|+|+|..|+.+|..|+..|.       .+++++..+.               ++-   -+...+.+++...+.++-+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~---~~~~~~~in~~~~n~~ylp   62 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIE---GRNLTEIINTTHENVKYLP   62 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccC---CHHHHHHHHhcCCCccccC
Confidence            58999999999999999999883       4566665421               110   0112222322211111100


Q ss_pred             ---ecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513          168 ---HREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG  214 (340)
Q Consensus       168 ---~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~  214 (340)
                         .+..+. ..+..+.++++|+||.++-+...+..+.+...  +.+.++|+.
T Consensus        63 gi~Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~  115 (342)
T TIGR03376        63 GIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC  115 (342)
T ss_pred             CCcCCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence               111111 13456778899999999988888877666542  345677774

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.85  E-value=0.23  Score=46.92  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=29.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|||+|.+|..+|..|+.+|. +++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            479999999999999999999995 688888653

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=94.82  E-value=0.34  Score=38.96  Aligned_cols=86  Identities=21%  Similarity=0.285  Sum_probs=54.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGAGGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +|+|||+|..|...+..+...  ++.-..++|.+.                   .+++.+   .++.+  +.  .+    
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~-------------------~~~~~~---~~~~~--~~--~~----   51 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP-------------------ERAEAF---AEKYG--IP--VY----   51 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH-------------------HHHHHH---HHHTT--SE--EE----
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH-------------------HHHHHH---HHHhc--cc--ch----
Confidence            699999999999999998887  333334555432                   222222   22221  11  11    


Q ss_pred             CcccHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          173 RTSNALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                        .+..++++  +.|+|+.+|.+ ..+..+...+.+.|++++.
T Consensus        52 --~~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~   91 (120)
T PF01408_consen   52 --TDLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLV   91 (120)
T ss_dssp             --SSHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEE
T ss_pred             --hHHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEE
Confidence              22445554  68999988875 5566777778888887664

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.81  E-value=0.2  Score=45.93  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             cccCCcEEEEcC-C-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           90 NLLKSSILVIGA-G-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      .+++++|+|.|+ | |+|..+++.|+..|.. +.++|.+                   ..+.+...+.+++..+...+..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~   73 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIH-------------------ERRLGETADELAAELGLGRVEA   73 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEE
Confidence            355788999997 5 7999999999999975 7776532                   1233444455544333334444


Q ss_pred             ecccCCcc-cHHh-------hcccCcEEEEcCC
Q 019513          168 HREALRTS-NALE-------ILSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~-------~l~~~DlVi~~tD  192 (340)
                      +..+++.. ....       .+...|+||.+..
T Consensus        74 ~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag  106 (262)
T PRK07831         74 VVCDVTSEAQVDALIDAAVERLGRLDVLVNNAG  106 (262)
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            44455432 1211       1235688887765

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.81  E-value=0.15  Score=49.49  Aligned_cols=72  Identities=21%  Similarity=0.317  Sum_probs=47.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ..+|+|+|+||+|.-.+++...+| -+++.+|                   .+..|.+.+++    +--+.-|..   . 
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~----lGAd~~i~~---~-  218 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKK----LGADHVINS---S-  218 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHH----hCCcEEEEc---C-
Confidence            678999999999999999999999 6777765                   45566655543    322222322   2 


Q ss_pred             CcccHHhhcccCcEEEEcCC
Q 019513          173 RTSNALEILSQYEIVVDATD  192 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD  192 (340)
                      +++.....-+.+|+||++..
T Consensus       219 ~~~~~~~~~~~~d~ii~tv~  238 (339)
T COG1064         219 DSDALEAVKEIADAIIDTVG  238 (339)
T ss_pred             CchhhHHhHhhCcEEEECCC
Confidence            22222222233999999987

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.80  E-value=0.32  Score=50.57  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-------CC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-------ST  162 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-------p~  162 (340)
                      -.++.|+|.|+ |++|..+++.|+..|. ++.+++.+.                   .|.+.+.+.+.++.       +.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~  137 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV  137 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence            35567888886 7899999999999996 466554321                   12333333332211       11


Q ss_pred             ceEEEecccCCc-ccHHhhcccCcEEEEcCCC
Q 019513          163 VHIIEHREALRT-SNALEILSQYEIVVDATDN  193 (340)
Q Consensus       163 v~i~~~~~~~~~-~~~~~~l~~~DlVi~~tD~  193 (340)
                      .++..+..++.. +.....+.++|+||.+...
T Consensus       138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~  169 (576)
T PLN03209        138 EKLEIVECDLEKPDQIGPALGNASVVICCIGA  169 (576)
T ss_pred             CceEEEEecCCCHHHHHHHhcCCCEEEEcccc
Confidence            234445555553 3445567889999988643

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=94.78  E-value=0.26  Score=46.27  Aligned_cols=95  Identities=18%  Similarity=0.224  Sum_probs=57.0

Q ss_pred             cEEEEc-CChhHHHHHHHHHH-cCCCcEEEEe-CCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           95 SILVIG-AGGLGSPALLYLAA-CGVGRLGIVD-HDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        95 ~VlVvG-~GglGs~va~~La~-aGvg~i~lvD-~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +|+|+| +|.+|..++..+.. .++.-+.++| .+.-.              +|+.    +.+ +....+. .+..+   
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--------------~~~~----~~~-~~~~~~~-gv~~~---   59 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--------------QGTD----AGE-LAGIGKV-GVPVT---   59 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------------cCCC----HHH-hcCcCcC-Cceee---
Confidence            799999 59999999999985 5776677777 22100              1110    000 1111100 01111   


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                         .+..++...+|+|||+| .+.....+-..|.++|+|+|.+.+
T Consensus        60 ---~d~~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt  100 (266)
T TIGR00036        60 ---DDLEAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT  100 (266)
T ss_pred             ---CCHHHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC
Confidence               12223334589999998 566666777888899999987664

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.78  E-value=0.07  Score=50.87  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |.|||+|.+|+.+|..|+..|..++.|+|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            6799999999999999999886699999976

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.75  E-value=0.18  Score=53.20  Aligned_cols=88  Identities=16%  Similarity=0.266  Sum_probs=62.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ..+|+|+|+|.+|..+++.|...|+ +++++|.|.-                   +++.+    ++.  ..  ..+..+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~----~~~--g~--~v~~GDa  451 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIETL----RKF--GM--KVFYGDA  451 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHH----Hhc--CC--eEEEEeC
Confidence            5799999999999999999999997 4889997751                   23333    222  22  2344444


Q ss_pred             CcccHH--hhcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513          173 RTSNAL--EILSQYEIVVDATDNAPSRYMISDCCVVLG  208 (340)
Q Consensus       173 ~~~~~~--~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~  208 (340)
                      +..+..  .-++++|+||.++|+.+....+...++++.
T Consensus       452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~  489 (621)
T PRK03562        452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF  489 (621)
T ss_pred             CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            433322  235689999999999988888877877763

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.75  E-value=0.052  Score=54.99  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .|.+++|+|+|.|.+|..+|+.|...|. +++++|.|.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            5899999999999999999999999998 588877553

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.74  E-value=0.16  Score=45.88  Aligned_cols=82  Identities=21%  Similarity=0.244  Sum_probs=51.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.+++.+.                   .+...+...+...++.  +..+
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~~~   60 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICG-------------------DDAAATAELVEAAGGK--ARAR   60 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCe--EEEE
Confidence            466789999995 6799999999999996 577766442                   2334444555544433  3444


Q ss_pred             cccCCc-ccHHhhc-------ccCcEEEEcCCC
Q 019513          169 REALRT-SNALEIL-------SQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~-~~~~~~l-------~~~DlVi~~tD~  193 (340)
                      ..++.. +...+++       ..+|+||.+...
T Consensus        61 ~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~   93 (251)
T PRK12826         61 QVDVRDRAALKAAVAAGVEDFGRLDILVANAGI   93 (251)
T ss_pred             ECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            444442 2222222       367888888633

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.71  E-value=0.1  Score=50.00  Aligned_cols=32  Identities=34%  Similarity=0.437  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+|.|||+|-+|+.+|..|+..|.+.+.++|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            47999999999999999999999878999995

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=94.70  E-value=0.16  Score=50.44  Aligned_cols=124  Identities=18%  Similarity=0.226  Sum_probs=78.8

Q ss_pred             CCCCCHHHHhhhhhhccCCCCCHHH------------------HHcccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEE
Q 019513           63 DYGLSPDMIYRYSRHLLLPSFGVEG------------------QSNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGI  122 (340)
Q Consensus        63 ~~~l~~~e~~ry~Rq~~l~~~G~~~------------------q~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~l  122 (340)
                      +.++--++..||.-.+-+  |..+-                  -++|+..+|++.|+|+.|..++..|..+|+.  +|.+
T Consensus       153 p~cf~ie~~lr~~~~IPv--FhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~  230 (432)
T COG0281         153 PRCFAIEERLRYRMNIPV--FHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFV  230 (432)
T ss_pred             chhhHHHHHHhhcCCCCc--ccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEE
Confidence            345666677777655544  64322                  1589999999999999999999999999998  9999


Q ss_pred             EeCCcccccCCccccccCCC-c--cCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChh-hHH
Q 019513          123 VDHDVVELNNMHRQVIHTEP-Y--IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP-SRY  198 (340)
Q Consensus       123 vD~D~Ve~sNL~Rq~l~~~~-d--iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~-~r~  198 (340)
                      +|.--+         ++... |  .++.|.+.+.+......   +             ...+.+.|++|.++..-. +..
T Consensus       231 ~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~---~-------------~~~~~~adv~iG~S~~G~~t~e  285 (432)
T COG0281         231 VDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT---L-------------DLALAGADVLIGVSGVGAFTEE  285 (432)
T ss_pred             EecCCc---------ccCCCcccccchHHHHHHHhhhcccc---c-------------cccccCCCEEEEcCCCCCcCHH
Confidence            996533         22111 2  35556555543322211   0             114567899998887522 344


Q ss_pred             HHHHHHHHcCCcEEEEee
Q 019513          199 MISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       199 ~i~~~~~~~~~p~i~~~~  216 (340)
                      ++...+..   |+|..-+
T Consensus       286 ~V~~Ma~~---PiIfala  300 (432)
T COG0281         286 MVKEMAKH---PIIFALA  300 (432)
T ss_pred             HHHHhccC---CEEeecC
Confidence            45544333   8877543

>PRK08374 homoserine dehydrogenase; Provisional

Probab=94.68  E-value=0.24  Score=48.21  Aligned_cols=108  Identities=20%  Similarity=0.202  Sum_probs=55.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHH--------cCCC--cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAA--------CGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV  163 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~--------aGvg--~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v  163 (340)
                      -+|+|+|+|.+|+.+++.|..        .|+.  -+.+.|.+.         .++.+..+..   ..+.+..++-..-.
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~---~~l~~~~~~~~~~~   70 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDL---REAKEVKENFGKLS   70 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCCh---HHHHHhhhccCchh
Confidence            479999999999999999877        5633  344445321         1122222221   22222222221111


Q ss_pred             eEEEecccCCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          164 HIIEHREALRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       164 ~i~~~~~~~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .+.. +......+..+++  .++|+||+++..... ..+...+.+.|+++|.+.
T Consensus        71 ~~~~-~~~~~~~~~~ell~~~~~DVvVd~t~~~~a-~~~~~~al~~G~~VVtan  122 (336)
T PRK08374         71 NWGN-DYEVYNFSPEEIVEEIDADIVVDVTNDKNA-HEWHLEALKEGKSVVTSN  122 (336)
T ss_pred             hccc-cccccCCCHHHHHhcCCCCEEEECCCcHHH-HHHHHHHHhhCCcEEECC
Confidence            1100 0000011334455  368999999965433 344455667788888654

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.67  E-value=0.16  Score=47.94  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=26.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|+|+|+|++|+.+|..|+..|. .+++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            69999999999999999999984 5888764

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=94.64  E-value=0.087  Score=53.72  Aligned_cols=35  Identities=29%  Similarity=0.435  Sum_probs=31.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|+|+||+|..++..|+..|+ ++.++|.
T Consensus       329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R  363 (477)
T PRK09310        329 PLNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR  363 (477)
T ss_pred             CcCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3577899999999999999999999998 7888763

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.64  E-value=0.2  Score=45.33  Aligned_cols=35  Identities=34%  Similarity=0.615  Sum_probs=30.2

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~   38 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN   38 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            67889999997 8999999999999996 57877743

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.64  E-value=0.21  Score=47.99  Aligned_cols=31  Identities=19%  Similarity=0.386  Sum_probs=27.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|.|+|+|.+|+.++..|+..| ..+++++.+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence            5999999999999999999999 457888754

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.60  E-value=0.11  Score=50.36  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCceE
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHI  165 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGv-g-----~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v~i  165 (340)
                      .||.|||+ |.+|+.+|..|+..|+ +     +|.|+|-..                 .+.|++.-+.-|.... |... 
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~-   65 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLA-   65 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccC-
Confidence            57999998 9999999999999987 4     688887321                 1234444454555544 3221 


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                         ...+. ....+.++++|+||.+.+.+
T Consensus        66 ---~~~i~-~~~~~~~~daDvVVitAG~~   90 (323)
T TIGR01759        66 ---GVVAT-TDPEEAFKDVDAALLVGAFP   90 (323)
T ss_pred             ---CcEEe-cChHHHhCCCCEEEEeCCCC
Confidence               01122 23356678999999887663

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=94.57  E-value=0.2  Score=45.35  Aligned_cols=33  Identities=33%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      |++++|+|.|+ |++|..+++.|+..|. ++.+++
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~   36 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG   36 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            67899999997 6799999999999997 576665

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=94.56  E-value=0.12  Score=49.75  Aligned_cols=32  Identities=34%  Similarity=0.581  Sum_probs=28.9

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      ||.|||+ |.+|+.+|..|+..|+ .+|.|+|-.
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            7999999 9999999999998887 679999854

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.56  E-value=0.62  Score=42.08  Aligned_cols=97  Identities=16%  Similarity=0.227  Sum_probs=61.4

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        96 VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      |+|+|+ |.+|..++..|...|.. +.++=               +.  .    .....+.++..  .+++.. ...-+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~---------------R~--~----~~~~~~~l~~~--g~~vv~-~d~~~~   55 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRALV---------------RD--P----SSDRAQQLQAL--GAEVVE-ADYDDP   55 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEEE---------------SS--S----HHHHHHHHHHT--TTEEEE-S-TT-H
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEEE---------------ec--c----chhhhhhhhcc--cceEee-cccCCH
Confidence            789997 77999999999997754 44421               11  1    22233445543  455542 222245


Q ss_pred             ccHHhhcccCcEEEEcCCCh---h--hHHHHHHHHHHcCCcEEEEeec
Q 019513          175 SNALEILSQYEIVVDATDNA---P--SRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~---~--~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                      +...+.+++.|.|+.++...   .  ....+-++|.+.|++.+--+.+
T Consensus        56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~  103 (233)
T PF05368_consen   56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF  103 (233)
T ss_dssp             HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred             HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence            66778899999999999843   2  2344778999999887754433

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06270 homoserine dehydrogenase; Provisional

Probab=94.55  E-value=0.2  Score=48.79  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc
Q 019513           94 SSILVIGAGGLGSPALLYLAAC  115 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~a  115 (340)
                      -+|.|+|+|.+|..+++.|...
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4799999999999999999765

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=94.53  E-value=0.32  Score=45.53  Aligned_cols=93  Identities=25%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|+|+|.-+-|..++..|...|..-+..+-.+                 .|....       ... +.  ...+...++.
T Consensus         2 ~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~-----------------~~~~~~-------~~~-g~--~~v~~g~l~~   54 (256)
T TIGR00715         2 TVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS-----------------EGKHLY-------PIH-QA--LTVHTGALDP   54 (256)
T ss_pred             eEEEEechHHHHHHHHHHHhCCCeEEEEEccC-----------------Cccccc-------ccc-CC--ceEEECCCCH
Confidence            79999997789999999999985444332211                 111110       000 01  1122333444


Q ss_pred             ccHHhhcc--cCcEEEEcCCChhhH--HHHHHHHHHcCCcEEEE
Q 019513          175 SNALEILS--QYEIVVDATDNAPSR--YMISDCCVVLGKPLVSG  214 (340)
Q Consensus       175 ~~~~~~l~--~~DlVi~~tD~~~~r--~~i~~~~~~~~~p~i~~  214 (340)
                      +...+++.  +.|+|||+|..++..  ..+.++|.+.++|++-.
T Consensus        55 ~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~   98 (256)
T TIGR00715        55 QELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF   98 (256)
T ss_pred             HHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence            44445553  489999999988864  45788999999999863

This enzyme was found to be a monomer by gel filtration.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.53  E-value=0.15  Score=46.11  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++++++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~   38 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN   38 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            367889999996 67999999999999975 8887654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=94.52  E-value=0.15  Score=55.95  Aligned_cols=42  Identities=26%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM  133 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL  133 (340)
                      -.+++|+|||+|..|-.+|.+|++.|. +++++|...++.-|.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~~  422 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLPF  422 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEcccccccccc
Confidence            467899999999999999999999995 599999876554443

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.52  E-value=0.085  Score=51.11  Aligned_cols=91  Identities=19%  Similarity=0.207  Sum_probs=57.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .|.+++|.|||+|.+|+.+|+.|...|+. +..+|.-.                 .+.+.                 ...
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~-----------------~~~~~-----------------~~~  183 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYS-----------------PRERA-----------------GVD  183 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCC-----------------chhhh-----------------ccc
Confidence            68899999999999999999999999976 44455311                 00000                 000


Q ss_pred             ccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHH---cCCcEEEEe
Q 019513          170 EALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVV---LGKPLVSGA  215 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~---~~~p~i~~~  215 (340)
                      ......+..++++.+|+|+..+- +++++.+|+..-..   .|.-+|+++
T Consensus       184 ~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a  233 (324)
T COG0111         184 GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA  233 (324)
T ss_pred             cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence            01112346778888998776654 46678888765433   244456644

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=94.52  E-value=0.062  Score=54.68  Aligned_cols=121  Identities=15%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCc--ccHHHHHHHHHhh-CCCceEEEe-c
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQ--SKVKSAAATCRSI-NSTVHIIEH-R  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~--~Ka~~a~~~L~~l-np~v~i~~~-~  169 (340)
                      ++|.|||+|..|+.+|.+|+..|. +++++|.+.=....+.....    .-|.  .-+...++.+..+ .|++-+... +
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~   76 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA   76 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence            479999999999999999999997 68888865422111111000    0010  0122344444443 345333321 1


Q ss_pred             ccCCc---ccHHhhcccCcEEEEcCCCh-hhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          170 EALRT---SNALEILSQYEIVVDATDNA-PSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       170 ~~~~~---~~~~~~l~~~DlVi~~tD~~-~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      .....   +.....+..-|+|||++... ..-....+.+...|+.++.+.+.|.
T Consensus        77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG  130 (470)
T PTZ00142         77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG  130 (470)
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence            11111   12334456678999998763 3333445677788999998777653

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=94.47  E-value=0.13  Score=52.37  Aligned_cols=121  Identities=16%  Similarity=0.146  Sum_probs=67.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEeccc-C
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L  172 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~-~  172 (340)
                      .|.|||+|..|..+|.+|+..|. ++.++|.+.-....+......   .-+..-+...++....+ .|++-+...+.. .
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~---g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~   76 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAK---GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP   76 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccC---CCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence            48899999999999999999997 588888654322222111000   00001122233333333 355444333321 1


Q ss_pred             Cc---ccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          173 RT---SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       173 ~~---~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ..   +.....+..=|+|||++.. +..-....+.+...++.+|.+.+.|.
T Consensus        77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG  127 (467)
T TIGR00873        77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG  127 (467)
T ss_pred             HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence            11   1223344566899999864 34333345567788999998777653

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.46  E-value=0.29  Score=47.39  Aligned_cols=114  Identities=13%  Similarity=0.049  Sum_probs=65.2

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--CCCceE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHI  165 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--np~v~i  165 (340)
                      ..++.++|+|.|+ |-+|+.+++.|...|. +++.+|...-...+                  .........  ...-.+
T Consensus        11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~------------------~~~~~~~~~~~~~~~~~   71 (348)
T PRK15181         11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQH------------------NLDDVRTSVSEEQWSRF   71 (348)
T ss_pred             ccccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCcchh------------------hhhhhhhccccccCCce
Confidence            4567799999996 6699999999999985 57777753211000                  000000000  001123


Q ss_pred             EEecccCCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          166 IEHREALRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       166 ~~~~~~~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      ..+..++.. +....+++++|+||.+......                 -.-+-++|++.++ .+|..++...+|
T Consensus        72 ~~~~~Di~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg  146 (348)
T PRK15181         72 IFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYG  146 (348)
T ss_pred             EEEEccCCCHHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhC
Confidence            444445543 3445667788888887642110                 0124467888775 688777655554

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.45  E-value=0.086  Score=50.99  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=28.8

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGv-g-----~i~lvD~  125 (340)
                      -.||.|+|+ |.+|+.+|..|+..|+ +     +|.|+|-
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            358999999 9999999999999887 4     6999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=94.44  E-value=0.3  Score=46.77  Aligned_cols=107  Identities=18%  Similarity=0.226  Sum_probs=60.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccC--CccccccCCCcc---Cc-ccHHHHHHHHHhhCCCceEE
Q 019513           95 SILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNN--MHRQVIHTEPYI---GQ-SKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sN--L~Rq~l~~~~di---G~-~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      +|.|||.||-|+.++..|.+.|+.  .+..+|.|.-....  ..+-++..+...   |. ...+..++...+.       
T Consensus         2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k~~ig~~~t~g~Gag~~~~~g~~~a~~~-------   74 (304)
T cd02201           2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEES-------   74 (304)
T ss_pred             eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEEcCCCCCCCCCCCCCHHHHHHHHHHH-------
Confidence            699999999999999999999985  45678887743332  223333322110   10 0111111111110       


Q ss_pred             EecccCCcccHHhhcccCcEEEEc------CCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          167 EHREALRTSNALEILSQYEIVVDA------TDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~------tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                             .+...+.++++|+|+.+      |.+-.+. .+.+++++++++.+...+
T Consensus        75 -------~~~I~~~l~~~d~v~i~aglGGGTGSG~ap-~ia~~a~e~g~~~~~vvt  122 (304)
T cd02201          75 -------REEIKEALEGADMVFITAGMGGGTGTGAAP-VIAKIAKEMGALTVAVVT  122 (304)
T ss_pred             -------HHHHHHHHhCCCEEEEeeccCCCcchhHHH-HHHHHHHHcCCCEEEEEe
Confidence                   01234456778877765      3333333 377888898887666444

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=94.44  E-value=0.049  Score=54.66  Aligned_cols=41  Identities=20%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEE
Q 019513          257 GVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRI  298 (340)
Q Consensus       257 gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~  298 (340)
                      -|+++++|+++|+|+||+++.+..|+.| .++||+.+++..+
T Consensus       384 ~~~~~~~gg~~aqE~iK~~t~q~vp~~n-~~i~dg~~~~s~~  424 (425)
T cd01493         384 HNISAFMGGIAAQEVIKLITKQYVPIDN-TFIFDGIRSKSAT  424 (425)
T ss_pred             chHHHHHhHHHHHHHHHHHhccccccCC-ceEEeccccceec
Confidence            5788999999999999999999999866 8889999887654

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PLN02852 ferredoxin-NADP+ reductase

Probab=94.43  E-value=0.19  Score=51.35  Aligned_cols=97  Identities=18%  Similarity=0.190  Sum_probs=55.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHH--cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--CCCceEEE
Q 019513           92 LKSSILVIGAGGLGSPALLYLAA--CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHIIE  167 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--np~v~i~~  167 (340)
                      ..++|+|||+|..|.++|..|+.  .| .+++|+|.... +-.+.|.....  +  .+........+.++  .+.+++..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p~-pgGlvr~gvaP--~--~~~~k~v~~~~~~~~~~~~v~~~~   98 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLPT-PFGLVRSGVAP--D--HPETKNVTNQFSRVATDDRVSFFG   98 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCCC-CcceEeeccCC--C--cchhHHHHHHHHHHHHHCCeEEEc
Confidence            46789999999999999999997  56 47999997653 34444432211  1  11222222222221  13444322


Q ss_pred             ecccCCc-ccHHhhcccCcEEEEcCCChh
Q 019513          168 HREALRT-SNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       168 ~~~~~~~-~~~~~~l~~~DlVi~~tD~~~  195 (340)
                       +..+.. -...++...||.||.++....
T Consensus        99 -nv~vg~dvtl~~L~~~yDaVIlAtGa~~  126 (491)
T PLN02852         99 -NVTLGRDVSLSELRDLYHVVVLAYGAES  126 (491)
T ss_pred             -CEEECccccHHHHhhhCCEEEEecCCCC
Confidence             111111 133445568999999998753

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=94.42  E-value=0.44  Score=44.91  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=25.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D  126 (340)
                      +..+|.|||+|.+|..++..|...  |+.-..++|.+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~   41 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD   41 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence            446899999999999999999874  44323355543

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.38  E-value=0.15  Score=49.73  Aligned_cols=97  Identities=16%  Similarity=0.197  Sum_probs=56.3

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEE-EEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLG-IVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~-lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +|+|+|+ |.+|.++++.|...-.-++. +++.+.               ..|+.        +.+..|.+... ....+
T Consensus         2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~-~~~~~   57 (346)
T TIGR01850         2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL-VDLNL   57 (346)
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCcccccc-CCcee
Confidence            7999999 77999999999966333444 545331               12221        12222322110 01112


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                      ...+..++.+++|+|+.|+.+...+.++..+ .+.|+.+|+.++
T Consensus        58 ~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~  100 (346)
T TIGR01850        58 EPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA  100 (346)
T ss_pred             ecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence            2112234445799999999987766665554 557899998543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.38  E-value=0.083  Score=50.61  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..+|+|||+|++|+.+|..|+.+| ..++++..+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence            357999999999999999999999 5688887654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.34  E-value=0.29  Score=51.73  Aligned_cols=126  Identities=16%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             CCCCHHHHhhhhhhccCC-CCCHHH-HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCC
Q 019513           64 YGLSPDMIYRYSRHLLLP-SFGVEG-QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE  141 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~-~~G~~~-q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~  141 (340)
                      .+++=..++||--..... .|.... ...-..++|+|||+|..|-.+|..|++.|. +++|+|....-- -+-|.-. ..
T Consensus       279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~G-G~l~~gi-p~  355 (639)
T PRK12809        279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIG-GMLTFGI-PP  355 (639)
T ss_pred             CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCC-CeeeccC-Cc
Confidence            456666777775433210 121111 112257999999999999999999999997 599998553210 0111000 00


Q ss_pred             CccCcccHHHHHHHHHhhCCCceEEEecccCC-cccHHhhcccCcEEEEcCCChh
Q 019513          142 PYIGQSKVKSAAATCRSINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       142 ~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      ..+-+.-.+...+.++++.  +++.... .+. .....++...||.||.++....
T Consensus       356 ~~l~~~~~~~~~~~~~~~G--v~~~~~~-~v~~~~~~~~l~~~~DaV~latGa~~  407 (639)
T PRK12809        356 FKLDKTVLSQRREIFTAMG--IDFHLNC-EIGRDITFSDLTSEYDAVFIGVGTYG  407 (639)
T ss_pred             ccCCHHHHHHHHHHHHHCC--eEEEcCC-ccCCcCCHHHHHhcCCEEEEeCCCCC
Confidence            0111111222233444443  3333221 111 1123344568999999998754

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.33  E-value=0.31  Score=48.58  Aligned_cols=41  Identities=32%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQ  136 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq  136 (340)
                      +|.|||+|-+|..+|..|+..|. +++++|.+.-....++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g   42 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG   42 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence            69999999999999999999996 588899765444444443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=94.30  E-value=0.41  Score=46.17  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=28.0

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      |++++|.|||+|.+|..++++|..+|+. +.+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~   33 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL   33 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence            5789999999999999999999999973 44433

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.24  Score=45.40  Aligned_cols=83  Identities=18%  Similarity=0.268  Sum_probs=55.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.++..++..+
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV   63 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence            477889999986 5799999999999996 47776632                   23455556666654455566666


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ....+       +...|++|.+..
T Consensus        64 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag   95 (260)
T PRK07063         64 PADVTDAASVAAAVAAAEEAFGPLDVLVNNAG   95 (260)
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            6666542 22222       246888888764

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.27  E-value=0.36  Score=45.46  Aligned_cols=31  Identities=26%  Similarity=0.262  Sum_probs=27.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|.|||+|.+|..++..|...|. ++.++|.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            69999999999999999999985 68888864

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.26  E-value=0.29  Score=51.35  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +.+|+|+|.|.+|..+++.|...|+ .++++|.|.-                   +++.    +++.  .  ...+..+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~--g--~~v~~GDa  451 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVNL----MRKY--G--YKVYYGDA  451 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhC--C--CeEEEeeC
Confidence            5789999999999999999999997 5899997741                   2222    2222  1  22333344


Q ss_pred             CcccHHh--hcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513          173 RTSNALE--ILSQYEIVVDATDNAPSRYMISDCCVVLG  208 (340)
Q Consensus       173 ~~~~~~~--~l~~~DlVi~~tD~~~~r~~i~~~~~~~~  208 (340)
                      +..+..+  -++++|+||.++|+......+-..+++.+
T Consensus       452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~  489 (601)
T PRK03659        452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF  489 (601)
T ss_pred             CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence            4333222  24789999999999888877777777753

>PRK07576 short chain dehydrogenase; Provisional

Probab=94.23  E-value=0.16  Score=46.86  Aligned_cols=37  Identities=14%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .++++++|+|.|+ |++|..+++.|+..|.. +.++|.+
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~   42 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS   42 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4678899999997 68999999999999964 7777643

>PRK13018 cell division protein FtsZ; Provisional

Probab=94.22  E-value=0.35  Score=47.79  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=32.3

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~  127 (340)
                      ..+.+|.|||+||.|+.++.+|...|+.  .+..+|.|.
T Consensus        26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~   64 (378)
T PRK13018         26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA   64 (378)
T ss_pred             cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence            4467899999999999999999999976  567888887

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=94.21  E-value=0.43  Score=50.56  Aligned_cols=105  Identities=12%  Similarity=0.095  Sum_probs=60.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      -++++|+|.|+ |-+|+.+++.|...|=-+++.+|...-   +..                       ...+.-.++.+.
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~---~~~-----------------------~~~~~~~~~~~~  366 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD---AIS-----------------------RFLGHPRFHFVE  366 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch---hhh-----------------------hhcCCCceEEEe
Confidence            45678999996 669999999999864235666664320   000                       000111233344


Q ss_pred             ccCCcc-c-HHhhcccCcEEEEcCCCh-----------------hhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513          170 EALRTS-N-ALEILSQYEIVVDATDNA-----------------PSRYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       170 ~~~~~~-~-~~~~l~~~DlVi~~tD~~-----------------~~r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      .+++.. . ..+.++++|+||.+....                 ..-..+-++|.++++.+|+.++...+|
T Consensus       367 gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg  437 (660)
T PRK08125        367 GDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYG  437 (660)
T ss_pred             ccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcC
Confidence            455432 1 234567788888754311                 111224567888888898877765555

>PLN00106 malate dehydrogenase

Probab=94.21  E-value=0.14  Score=49.52  Aligned_cols=36  Identities=28%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~  127 (340)
                      ...||+|+|+ |.+|+.++..|+..|. .+|.|+|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            3468999999 9999999999998887 5799998654

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.20  E-value=0.13  Score=48.05  Aligned_cols=73  Identities=23%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcC--C-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC---CceEEEe
Q 019513           96 ILVIGA-GGLGSPALLYLAACG--V-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVHIIEH  168 (340)
Q Consensus        96 VlVvG~-GglGs~va~~La~aG--v-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp---~v~i~~~  168 (340)
                      |.|||+ |.+|..++..|+..|  . .+|.|+|.+.                   .|++..+..|+....   ..++.. 
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~-   60 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSI-   60 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEE-
Confidence            689999 889999999999998  4 6899998543                   233334444444432   233332 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC
Q 019513          169 REALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                          + .+..+.++++|+||.+...
T Consensus        61 ----~-~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650          61 ----T-DDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             ----C-CchHHHhCCCCEEEECCCC
Confidence                1 2234557899999986644

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.18  E-value=0.33  Score=44.30  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r   42 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR   42 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence            467899999996 7799999999999997 5777664

>PRK13529 malate dehydrogenase; Provisional

Probab=94.18  E-value=0.32  Score=50.18  Aligned_cols=112  Identities=15%  Similarity=0.215  Sum_probs=66.1

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHH----cCC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAA----CGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS  158 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~----aGv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~  158 (340)
                      .+|++.+|+++|+|+.|..+|+.|..    .|+      .+|.++|.+-+=..+  |      .++-..|..-+..    
T Consensus       291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l~~~k~~fa~~----  358 (563)
T PRK13529        291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDLLDFQKPYARK----  358 (563)
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------CcchHHHHHHhhh----
Confidence            57899999999999999999999987    699      599999976431110  0      1122223222221    


Q ss_pred             hCCCceEEEecccCCcccHHhhcccC--cEEEEcCCC--hhhHHHHHHHHHHcCCcEEEEe
Q 019513          159 INSTVHIIEHREALRTSNALEILSQY--EIVVDATDN--APSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       159 lnp~v~i~~~~~~~~~~~~~~~l~~~--DlVi~~tD~--~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .++ .  ......-...++.+.++..  |++|.++..  .-+...|...+.....|+|.+-
T Consensus       359 ~~~-~--~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL  416 (563)
T PRK13529        359 REE-L--ADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPL  416 (563)
T ss_pred             ccc-c--cccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence            111 0  0000000112455666655  888877652  3356667777776777877643

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.17  E-value=0.56  Score=42.97  Aligned_cols=34  Identities=26%  Similarity=0.374  Sum_probs=27.1

Q ss_pred             HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEE
Q 019513           88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGI  122 (340)
Q Consensus        88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~l  122 (340)
                      .+..+.++|+|+|+ |.+|..+++.|+..|.. ++.
T Consensus        12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~   46 (251)
T PLN00141         12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA   46 (251)
T ss_pred             cccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence            34556789999996 77999999999998854 444

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.14  E-value=0.27  Score=54.23  Aligned_cols=95  Identities=13%  Similarity=0.166  Sum_probs=55.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCccc--HHHHHHHHHhhCCCceEEEec
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSK--VKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~K--a~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++|+|||+|..|..+|.+|++.|. +++|+|...    .++=..-+.--+.-.+|  ++.-.+.++++  .+++..-.
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~--Gv~f~~n~  377 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPNQLIDDVVEKIKLL--GGRFVKNF  377 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChHHHHHHHHHHHHhh--cCeEEEeE
Confidence            58999999999999999999999996 589998542    12221111111111222  22233344444  34443211


Q ss_pred             ccCC-cccHHhhcc-cCcEEEEcCCCh
Q 019513          170 EALR-TSNALEILS-QYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~-~~~~~~~l~-~~DlVi~~tD~~  194 (340)
                       .+. .-...++.+ +||.||.++...
T Consensus       378 -~vG~dit~~~l~~~~yDAV~LAtGA~  403 (944)
T PRK12779        378 -VVGKTATLEDLKAAGFWKIFVGTGAG  403 (944)
T ss_pred             -EeccEEeHHHhccccCCEEEEeCCCC
Confidence             111 112334444 699999999874

>PLN03139 formate dehydrogenase; Provisional

Probab=94.14  E-value=0.14  Score=50.70  Aligned_cols=93  Identities=19%  Similarity=0.183  Sum_probs=58.0

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|+. +..+|....                   +.+..    .+.+  +  .. 
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~-------------------~~~~~----~~~g--~--~~-  245 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKM-------------------DPELE----KETG--A--KF-  245 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCc-------------------chhhH----hhcC--c--ee-
Confidence            469999999999999999999999999975 555663211                   00000    0110  1  00 


Q ss_pred             cccCCcccHHhhcccCcEEEEcC-CChhhHHHHHHHHHH---cCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~t-D~~~~r~~i~~~~~~---~~~p~i~~~  215 (340)
                           .++..++++.+|+|+.+. .+..++.+++.....   .+.-+|+.+
T Consensus       246 -----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        246 -----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA  291 (386)
T ss_pred             -----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence                 124567778899877665 456678888754332   234455543

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=94.14  E-value=0.13  Score=52.53  Aligned_cols=121  Identities=14%  Similarity=0.111  Sum_probs=70.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcc---cHHHHHHHHHhh-CCCceEEEec
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQS---KVKSAAATCRSI-NSTVHIIEHR  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~---Ka~~a~~~L~~l-np~v~i~~~~  169 (340)
                      .+|.+||+|-.|+.+|.+|+..|. ++++.|.+.=....+...    ....|..   -+...++....+ .|++-+....
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~   81 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK   81 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence            479999999999999999999996 588887542111111000    0000211   123334444433 2555444332


Q ss_pred             ccCCc----ccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          170 EALRT----SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       170 ~~~~~----~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ..-.-    +.+...+..=|+|||++-. +..-..+.+.+...|+.+|.+.+.|.
T Consensus        82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG  136 (493)
T PLN02350         82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG  136 (493)
T ss_pred             CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence            22110    1123344567899999877 44445567788889999998777654

>PRK09330 cell division protein FtsZ; Validated

Probab=94.13  E-value=0.35  Score=47.95  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=66.7

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc--ccccCCccccccCCCcc---Cc-ccHHHHHHHHHhhCCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV--VELNNMHRQVIHTEPYI---GQ-SKVKSAAATCRSINST  162 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~--Ve~sNL~Rq~l~~~~di---G~-~Ka~~a~~~L~~lnp~  162 (340)
                      ....+|.|||+||-|+.++.+|...|+.  .+..++.|.  .+.+...+-++..+.-.   |- ...+..++...+.   
T Consensus        11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~---   87 (384)
T PRK09330         11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEES---   87 (384)
T ss_pred             ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHH---
Confidence            4467899999999999999999999875  567777776  33344433333322100   10 1112222111110   


Q ss_pred             ceEEEecccCCcccHHhhcccCcEEEEcCC------ChhhHHHHHHHHHHcCCcEEEEee
Q 019513          163 VHIIEHREALRTSNALEILSQYEIVVDATD------NAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD------~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                                 .+...+.++++|+|+.+..      +-.+. .|.+++++++++.+...+
T Consensus        88 -----------~e~I~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaVvt  135 (384)
T PRK09330         88 -----------REEIREALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAVVT  135 (384)
T ss_pred             -----------HHHHHHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEEEe
Confidence                       0223455678998886643      22333 789999999988776554

>TIGR00065 ftsZ cell division protein FtsZ

Probab=94.10  E-value=0.37  Score=47.21  Aligned_cols=122  Identities=16%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCc--EEEEeCCcc--cccCCccccccCCCc---cCc-ccHHHHHHHHHh
Q 019513           87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGR--LGIVDHDVV--ELNNMHRQVIHTEPY---IGQ-SKVKSAAATCRS  158 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~--i~lvD~D~V--e~sNL~Rq~l~~~~d---iG~-~Ka~~a~~~L~~  158 (340)
                      .|+--.+.+|.|||.||-|+.++..|.+.|+..  +..+|.|.-  +.++..+.++..+..   .|. ...+..++...+
T Consensus        11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~aee   90 (349)
T TIGR00065        11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKAAEE   90 (349)
T ss_pred             hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHHHHH
Confidence            344445578999999999999999999999864  455888763  333333333333211   111 011111111111


Q ss_pred             hCCCceEEEecccCCcccHHhhcccCcEEEEcC------CChhhHHHHHHHHHHcCCcEEEEeec--CceeEE
Q 019513          159 INSTVHIIEHREALRTSNALEILSQYEIVVDAT------DNAPSRYMISDCCVVLGKPLVSGAAL--GLEGQL  223 (340)
Q Consensus       159 lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~t------D~~~~r~~i~~~~~~~~~p~i~~~~~--g~~G~i  223 (340)
                      .              .+...+.++++|.|+.+.      .+-. -..|.+++++.+++.+...+.  .++|..
T Consensus        91 ~--------------~d~Ir~~le~~D~vfI~aglGGGTGSG~-apvia~~ake~~~l~vaivt~Pf~~Eg~~  148 (349)
T TIGR00065        91 S--------------RDEIRKLLEGADMVFITAGMGGGTGTGA-APVVAKIAKELGALTVAVVTKPFKFEGLK  148 (349)
T ss_pred             H--------------HHHHHHHHhCCCEEEEEEeccCccchhH-HHHHHHHHHHcCCCEEEEEeCCccccchh
Confidence            0              012334556788777653      2222 337888888888877765443  344543

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.10  E-value=0.39  Score=46.34  Aligned_cols=35  Identities=29%  Similarity=0.233  Sum_probs=28.7

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++++|+|.|+ |.+|+.+++.|+..|. ++.++|.+
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence            56789999996 6699999999999995 56666644

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.09  E-value=0.44  Score=44.79  Aligned_cols=91  Identities=14%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      ..+|.+||+|.+|..++..|...|+   ..+.++|...                  ..+++.    +.... .+++.   
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~~----l~~~~-g~~~~---   56 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQE----LHQKY-GVKGT---   56 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHHH----HHHhc-CceEe---
Confidence            4579999999999999999999983   3344433110                  011222    22111 12211   


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG  214 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~  214 (340)
                           .+..+..+++|+||.|+-+......+..+...  .+..+|+.
T Consensus        57 -----~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~   98 (279)
T PRK07679         57 -----HNKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISL   98 (279)
T ss_pred             -----CCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence                 12234567789999998877777666665432  34556664

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.06  E-value=0.22  Score=50.28  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=32.8

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      +.+++|+|+|+|..|..+++.|.+.| ..+++.|.+...
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence            44899999999999999999999999 668888866543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.06  E-value=0.49  Score=44.57  Aligned_cols=90  Identities=16%  Similarity=0.138  Sum_probs=54.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +.+|.+||+|-+|..++..|...|.   .+|.++|.+                   ..+++    .+.+.. .+++  . 
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~----~l~~~~-g~~~--~-   54 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLK----NASDKY-GITI--T-   54 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHH----HHHHhc-CcEE--e-
Confidence            4579999999999999999999985   246655432                   11222    222211 1221  1 


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG  214 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~  214 (340)
                           .+..+.++++|+||.|+-.......+.++.-  +.+.-+|+.
T Consensus        55 -----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi   96 (272)
T PRK12491         55 -----TNNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTI   96 (272)
T ss_pred             -----CCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEe
Confidence                 1223456789999999986666666666542  233446663

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.05  E-value=0.32  Score=49.40  Aligned_cols=63  Identities=22%  Similarity=0.240  Sum_probs=43.4

Q ss_pred             CCCCCHHHHhhhhhhccCC-CCCHH-HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           63 DYGLSPDMIYRYSRHLLLP-SFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        63 ~~~l~~~e~~ry~Rq~~l~-~~G~~-~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+++=..++||.-..... .|... ....-.+++|+|||+|..|..+|..|++.|.. ++|+|.+
T Consensus       109 ~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~  173 (467)
T TIGR01318       109 FGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH  173 (467)
T ss_pred             CCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            3467777888887443221 11111 01122568999999999999999999999975 8888854

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.04  E-value=0.18  Score=50.55  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++++|+|+|.|++|..+|+.|+..|. ++.+.|.+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~   37 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK   37 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            567899999999999999999999996 57777744

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.02  E-value=0.44  Score=45.46  Aligned_cols=34  Identities=35%  Similarity=0.455  Sum_probs=29.5

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~  196 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP  196 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4789999999999999999999999886777654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.97  E-value=0.07  Score=51.20  Aligned_cols=80  Identities=24%  Similarity=0.310  Sum_probs=49.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc--------ccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE--------LNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve--------~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      ++|.|||+|-.|+-+|..++.+|+ .++++|...-.        ..++.|+.     .-|+.+-+.....+..+.+...+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~~   77 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTDL   77 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCch
Confidence            689999999999999999999664 48888865211        11222222     11444444444444444433321


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCC
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD  192 (340)
                                   .-++++|+||.+.-
T Consensus        78 -------------~~l~~~DlVIEAv~   91 (307)
T COG1250          78 -------------AALKDADLVIEAVV   91 (307)
T ss_pred             -------------hHhccCCEEEEecc
Confidence                         14678999998763

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=93.95  E-value=0.5  Score=44.12  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=24.9

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~  125 (340)
                      +|+|.|+ |.+|..+++.|...|- -++.++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899996 7799999999999873 35777663

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK06949 short chain dehydrogenase; Provisional

Probab=93.94  E-value=0.34  Score=44.07  Aligned_cols=34  Identities=32%  Similarity=0.436  Sum_probs=28.8

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r   41 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR   41 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            67899999996 7799999999999997 4776653

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.92  E-value=0.28  Score=41.49  Aligned_cols=83  Identities=12%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ++|+|.| .+|+|.++++.|+..|-.++.+++.+                 .-..+.+.+...++..+  .++..+..++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~   61 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDL   61 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESET
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--cccccccccc
Confidence            4688898 56799999999999998888887644                 11234555556666444  5566665555


Q ss_pred             Ccc-cH-------HhhcccCcEEEEcCCChh
Q 019513          173 RTS-NA-------LEILSQYEIVVDATDNAP  195 (340)
Q Consensus       173 ~~~-~~-------~~~l~~~DlVi~~tD~~~  195 (340)
                      +.. ..       .+.....|++|.+.....
T Consensus        62 ~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~   92 (167)
T PF00106_consen   62 SDPESIRALIEEVIKRFGPLDILINNAGIFS   92 (167)
T ss_dssp             TSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            532 11       122357889998876544

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.91  E-value=0.36  Score=46.64  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=28.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|+ ++.+++.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            57899999999999999999999998 5777764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.33  Score=45.88  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=28.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R   72 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR   72 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            356788999996 7899999999999996 5777654

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.89  E-value=0.14  Score=49.28  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=29.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 019513           95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~  127 (340)
                      ||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6999999 9999999999999887 5799998643

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=93.85  E-value=0.16  Score=50.16  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            58999999999999999999999999975 555663

>PRK07574 formate dehydrogenase; Provisional

Probab=93.83  E-value=0.22  Score=49.40  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=58.2

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||.|.+|..+|+.|...|+ ++..+|....                   +.+..    ...  .+  .. 
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~-------------------~~~~~----~~~--g~--~~-  238 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL-------------------PEEVE----QEL--GL--TY-  238 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC-------------------chhhH----hhc--Cc--ee-
Confidence            46899999999999999999999999997 4666653210                   00000    011  11  11 


Q ss_pred             cccCCcccHHhhcccCcEEEEcC-CChhhHHHHHHHHHH---cCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~t-D~~~~r~~i~~~~~~---~~~p~i~~~  215 (340)
                           .....++++.+|+|+.+. .+..++.++++....   .+.-+|+.+
T Consensus       239 -----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        239 -----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             -----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence                 123567788899877665 456678888754322   344466544

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.83  E-value=0.43  Score=49.49  Aligned_cols=104  Identities=17%  Similarity=0.262  Sum_probs=65.6

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHH-----cCC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAA-----CGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR  157 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~-----aGv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~  157 (340)
                      ++|++.+|+++|+|+.|..+|+.|+.     .|+      ++|.++|.+-+-..+  |     .+.+-..|..-+..   
T Consensus       317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~---  386 (581)
T PLN03129        317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD---  386 (581)
T ss_pred             CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence            57899999999999999999999988     477      699999976431111  0     00122233332221   


Q ss_pred             hhCCCceEEEecccCCcccHHhhccc--CcEEEEcCC--ChhhHHHHHHHHHHcCCcEEEEe
Q 019513          158 SINSTVHIIEHREALRTSNALEILSQ--YEIVVDATD--NAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       158 ~lnp~v~i~~~~~~~~~~~~~~~l~~--~DlVi~~tD--~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                        .+.           ..+..+.++.  .|++|.++.  ..-+...|...+.....|+|.+-
T Consensus       387 --~~~-----------~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaL  435 (581)
T PLN03129        387 --HEP-----------GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFAL  435 (581)
T ss_pred             --ccc-----------CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence              100           1345556665  788887764  23355667777766777887653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.83  E-value=0.53  Score=47.46  Aligned_cols=61  Identities=21%  Similarity=0.253  Sum_probs=42.1

Q ss_pred             CCCCHHHHhhhhhhccCCCCCHH---HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           64 YGLSPDMIYRYSRHLLLPSFGVE---GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~~~G~~---~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++-..++||--.... ..|..   ........+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus       102 ~~v~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~  165 (449)
T TIGR01316       102 KPVSIGALERFVADWER-QHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL  165 (449)
T ss_pred             CCccHHHHHHHHHhHHH-hcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            46777777777643211 01110   0122356799999999999999999999996 69999964

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06545 prephenate dehydrogenase; Validated

Probab=93.81  E-value=0.18  Score=49.38  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=27.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|..+++.|.+.|. .+.++|.|
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~   32 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD   32 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence            469999999999999999999996 56777754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=93.79  E-value=0.39  Score=49.13  Aligned_cols=96  Identities=15%  Similarity=0.114  Sum_probs=58.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--CCCceEEEe
Q 019513           92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHIIEH  168 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--np~v~i~~~  168 (340)
                      +.++|+|||+|..|.++|..|+ ..|+ +++|+|....-- =+-|..... +   .++.+...+.+...  ++.+++. .
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~GVaP-d---h~~~k~v~~~f~~~~~~~~v~f~-g  110 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYGVAP-D---HIHVKNTYKTFDPVFLSPNYRFF-G  110 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEeCCC-C---CccHHHHHHHHHHHHhhCCeEEE-e
Confidence            4678999999999999999865 5665 599998655432 222322211 1   23444555555432  3555543 2


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCCCh
Q 019513          169 REALRT-SNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD~~  194 (340)
                      +..+.. -...++.+.||.||.++...
T Consensus       111 nv~VG~Dvt~eeL~~~YDAVIlAtGA~  137 (506)
T PTZ00188        111 NVHVGVDLKMEELRNHYNCVIFCCGAS  137 (506)
T ss_pred             eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence            323322 23455667899999999865

>PRK12862 malic enzyme; Reviewed

Probab=93.79  E-value=0.27  Score=52.96  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=35.6

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~  127 (340)
                      ++|++.||+|.|+|+.|..+++.|...|+.  +|.++|..-
T Consensus       189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G  229 (763)
T PRK12862        189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG  229 (763)
T ss_pred             CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence            578999999999999999999999999995  899999654

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.77  E-value=0.38  Score=48.53  Aligned_cols=105  Identities=16%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +-++++|+|.|+ |-+|+.+++.|...|. ++..+|.....                . + +.....+  .++.+++  +
T Consensus       116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~----------------~-~-~~~~~~~--~~~~~~~--i  172 (442)
T PLN02206        116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG----------------R-K-ENVMHHF--SNPNFEL--I  172 (442)
T ss_pred             ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc----------------c-h-hhhhhhc--cCCceEE--E
Confidence            446688999996 6699999999999996 46666643210                0 0 0000000  1222322  2


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC---------hhh--------HHHHHHHHHHcCCcEEEEeecCcee
Q 019513          169 REALRTSNALEILSQYEIVVDATDN---------APS--------RYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~---------~~~--------r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      ..++..    ..+.++|+||.+...         +..        -..+-++|++.++++|..++...+|
T Consensus       173 ~~D~~~----~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg  238 (442)
T PLN02206        173 RHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG  238 (442)
T ss_pred             ECCccC----hhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhC
Confidence            222221    234568999987642         110        0224578888888999887765554

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=93.76  E-value=0.32  Score=48.29  Aligned_cols=79  Identities=14%  Similarity=0.195  Sum_probs=53.5

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCc-
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGR------LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STV-  163 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~------i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v-  163 (340)
                      -.||.|||+ |.+|+.+|..|+..|+-.      |.|+|.|                 +-+.|++..+.-|.... |.. 
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~  106 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLR  106 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcC
Confidence            358999999 999999999999999843      6666544                 44456666666666544 332 


Q ss_pred             eEEEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          164 HIIEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       164 ~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .+.     +.. +..+.++++|+||.+...+
T Consensus       107 ~v~-----i~~-~~y~~~kdaDIVVitAG~p  131 (387)
T TIGR01757       107 EVS-----IGI-DPYEVFEDADWALLIGAKP  131 (387)
T ss_pred             ceE-----Eec-CCHHHhCCCCEEEECCCCC
Confidence            121     111 2245678999999887664

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=93.76  E-value=0.42  Score=45.31  Aligned_cols=90  Identities=20%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|.|++| ||.++.+.|.  +-..+.-.|...++                -.-.+.+.+.+++..|++-|++-..   
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~D----------------itd~~~v~~~i~~~~PDvVIn~AAy---   60 (281)
T COG1091           2 KILITGANGQLGTELRRALP--GEFEVIATDRAELD----------------ITDPDAVLEVIRETRPDVVINAAAY---   60 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC--CCceEEeccCcccc----------------ccChHHHHHHHHhhCCCEEEECccc---
Confidence            499999887 9999999998  43445555443322                2335678888889899887764221   


Q ss_pred             cccHHhhcccCcEEEEcCCChhhH--------HHHHHHHHHcCCcEEEEee
Q 019513          174 TSNALEILSQYEIVVDATDNAPSR--------YMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r--------~~i~~~~~~~~~p~i~~~~  216 (340)
                                 .-|-.|-.+++..        ..|.++|.+.|.++|+.++
T Consensus        61 -----------t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiST  100 (281)
T COG1091          61 -----------TAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHIST  100 (281)
T ss_pred             -----------cccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeec
Confidence                       1111233333333        3466789999999998775

>PLN02688 pyrroline-5-carboxylate reductase

Probab=93.76  E-value=0.45  Score=44.19  Aligned_cols=87  Identities=21%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC---CcEEEE-eCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           95 SILVIGAGGLGSPALLYLAACGV---GRLGIV-DHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv---g~i~lv-D~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +|.+||+|.+|+.++..|...|.   ..|.++ |.+                   ..|++    .+.+.  .+.+.    
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~-------------------~~~~~----~~~~~--g~~~~----   52 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSN-------------------PARRD----VFQSL--GVKTA----   52 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCC-------------------HHHHH----HHHHc--CCEEe----
Confidence            69999999999999999999985   245554 211                   11222    22222  22221    


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG  214 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~  214 (340)
                          .+..+.++++|+||.|+.....+..+.....  ..+..+|+.
T Consensus        53 ----~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~   94 (266)
T PLN02688         53 ----ASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSV   94 (266)
T ss_pred             ----CChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEe
Confidence                1223456789999999976555666655532  234456653

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=93.72  E-value=0.77  Score=42.79  Aligned_cols=92  Identities=20%  Similarity=0.220  Sum_probs=61.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ..+|+|+|--+=|..++..|...|+.-+.-+-.+                 .|.++             ...+..+...+
T Consensus         2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~-----------------~g~~~-------------~~~~~v~~G~l   51 (248)
T PRK08057          2 MPRILLLGGTSEARALARALAAAGVDIVLSLAGR-----------------TGGPA-------------DLPGPVRVGGF   51 (248)
T ss_pred             CceEEEEechHHHHHHHHHHHhCCCeEEEEEccC-----------------CCCcc-------------cCCceEEECCC
Confidence            3579999988889999999999987544333222                 22200             11223334445


Q ss_pred             -CcccHHhhc--ccCcEEEEcCCChhhHH--HHHHHHHHcCCcEEEE
Q 019513          173 -RTSNALEIL--SQYEIVVDATDNAPSRY--MISDCCVVLGKPLVSG  214 (340)
Q Consensus       173 -~~~~~~~~l--~~~DlVi~~tD~~~~r~--~i~~~~~~~~~p~i~~  214 (340)
                       +.+...+++  .+.++|||+|..++...  .+.++|.+.++|++--
T Consensus        52 ~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~   98 (248)
T PRK08057         52 GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRL   98 (248)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence             444555555  36899999999988654  4889999999999863

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.68  E-value=0.38  Score=43.84  Aligned_cols=81  Identities=16%  Similarity=0.257  Sum_probs=50.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++++|.|+ ||+|..+++.|+..|. ++.+++.+.                   .+.+.+.+.+++.+..  +..+
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~--~~~~   60 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQ-------------------AELDQLVAEIRAEGGE--AVAL   60 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCc--EEEE
Confidence            467789999986 5799999999999997 577765421                   2455555566655433  3344


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ....+       +...|+||.+..
T Consensus        61 ~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag   92 (254)
T PRK07478         61 AGDVRDEAYAKALVALAVERFGGLDIAFNNAG   92 (254)
T ss_pred             EcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            4444432 11111       235788887764

>PRK05872 short chain dehydrogenase; Provisional

Probab=93.66  E-value=0.54  Score=44.31  Aligned_cols=35  Identities=34%  Similarity=0.514  Sum_probs=29.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r   41 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL   41 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            467889999996 6799999999999997 5777764

>PRK09186 flagellin modification protein A; Provisional

Probab=93.65  E-value=0.29  Score=44.49  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=27.2

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      +++++|+|.|+ |++|..+++.|+..|.. +.+++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~   35 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD   35 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence            46789999997 67999999999999964 66554

>PRK06125 short chain dehydrogenase; Provisional

Probab=93.64  E-value=0.46  Score=43.50  Aligned_cols=36  Identities=36%  Similarity=0.544  Sum_probs=30.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~   40 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD   40 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            367889999997 6799999999999998 78887643

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.64  E-value=0.26  Score=42.90  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=29.4

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      ..|..++|+|+|.|-+|..+|..|...| -+++++|-|.+
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi   57 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI   57 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence            3577899999999999999999999999 56888887763

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.61  E-value=0.11  Score=46.05  Aligned_cols=87  Identities=18%  Similarity=0.204  Sum_probs=47.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH-HHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA-AATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a-~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|.|+|+|=+|.+.|..||..| -++.-+|.|.-....+++-..+..    .+-.+.+ ++.++.    -++.+     
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D~~~~~v~~l~~g~~p~~----E~~l~~ll~~~~~~----~~l~~-----   66 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVDIDEEKVEALNNGELPIY----EPGLDELLKENVSA----GRLRA-----   66 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT-SEEEEE-S-HHHHHHHHTTSSSS-----CTTHHHHHHHHHHT----TSEEE-----
T ss_pred             CEEEEECCCcchHHHHHHHHhCC-CEEEEEeCChHHHHHHhhcccccc----ccchhhhhcccccc----ccchh-----
Confidence            37999999999999999999999 557888988766666666544332    2222222 222221    11111     


Q ss_pred             CcccHHhhcccCcEEEEcCCChh
Q 019513          173 RTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                       ..+..+.++++|+++.|..++.
T Consensus        67 -t~~~~~ai~~adv~~I~VpTP~   88 (185)
T PF03721_consen   67 -TTDIEEAIKDADVVFICVPTPS   88 (185)
T ss_dssp             -ESEHHHHHHH-SEEEE----EB
T ss_pred             -hhhhhhhhhccceEEEecCCCc
Confidence             1234455788999999987654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.58  E-value=0.44  Score=43.37  Aligned_cols=35  Identities=37%  Similarity=0.525  Sum_probs=29.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r   39 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL   39 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence            366789999997 7799999999999997 4777664

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.57  E-value=0.44  Score=46.40  Aligned_cols=34  Identities=38%  Similarity=0.524  Sum_probs=29.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~  224 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL  224 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence            3578999999999999998888999987877763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.57  E-value=0.56  Score=47.12  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=55.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +..|+|+|.|+.|-.+|+.|...|. +++..|...                   ..  ...+.|++.++.+.+..-  ..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~-------------------~~--~~~~~l~~~~~g~~~~~~--~~   61 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSRE-------------------QP--PGLDTLAREFPDVELRCG--GF   61 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCC-------------------Cc--hhHHHHHhhcCCcEEEeC--CC
Confidence            4679999999999999999999996 588877432                   00  011234443445544321  11


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      .    .+.+.++|+||....-++.... -..+++.++|+++
T Consensus        62 ~----~~~~~~~d~vV~sp~i~~~~p~-~~~a~~~~i~i~~   97 (448)
T PRK03803         62 D----CELLVQASEIIISPGLALDTPA-LRAAAAMGIEVIG   97 (448)
T ss_pred             C----hHHhcCCCEEEECCCCCCCCHH-HHHHHHCCCcEEE
Confidence            1    2335678999877654433332 3345666777665

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=93.57  E-value=0.52  Score=43.65  Aligned_cols=36  Identities=28%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~   43 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN   43 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889999996 7799999999999997 57777643

>PRK06194 hypothetical protein; Provisional

Probab=93.55  E-value=0.39  Score=44.61  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=29.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r   38 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV   38 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788999985 6799999999999996 5777764

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=93.54  E-value=0.59  Score=43.85  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=23.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc-CCCcEEEEe
Q 019513           94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVD  124 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD  124 (340)
                      .||.|+|+|.+|..+++.|... ++.-..+++
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~   33 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIV   33 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEE
Confidence            3799999999999999999875 443334443

>PRK06138 short chain dehydrogenase; Provisional

Probab=93.52  E-value=0.47  Score=42.93  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=28.2

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r   37 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR   37 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence            67889999997 5799999999999995 5776653

>PRK06198 short chain dehydrogenase; Provisional

Probab=93.52  E-value=0.39  Score=43.83  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|..+++.|+..|..++.+++.+
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            477899999996 6799999999999998778887754

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.51  E-value=0.6  Score=47.68  Aligned_cols=89  Identities=24%  Similarity=0.353  Sum_probs=56.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+++|+|+|+|..|..+++.|...|. ++++.|...                   .+   . +.+++.  .+.+.  .. 
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~---~-~~l~~~--g~~~~--~~-   61 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA---L-RPHAER--GVATV--ST-   61 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH---H-HHHHhC--CCEEE--cC-
Confidence            57899999999999999999999995 677777321                   01   1 123332  23322  11 


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                         ....+.++++|+||.+..-+.... +-..+++.|+|+++
T Consensus        62 ---~~~~~~l~~~D~VV~SpGi~~~~p-~~~~a~~~gi~v~~   99 (488)
T PRK03369         62 ---SDAVQQIADYALVVTSPGFRPTAP-VLAAAAAAGVPIWG   99 (488)
T ss_pred             ---cchHhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEee
Confidence               111234567899998877555433 34455677777774

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.51  E-value=0.4  Score=43.26  Aligned_cols=81  Identities=22%  Similarity=0.249  Sum_probs=49.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ |++|..+++.|+..|.. +.+++.+                   ..+.+...+.++....  ++..+
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   61 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGL-------------------AAEARELAAALEAAGG--RAHAI   61 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            366789999996 78999999999999964 5555422                   2233444445544433  34444


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ....+       +.+.|+||.+..
T Consensus        62 ~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   93 (250)
T PRK12939         62 AADLADPASVQRFFDAAAAALGGLDGLVNNAG   93 (250)
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4444432 22222       246788888765

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=93.45  E-value=0.41  Score=48.36  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcE
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRL  120 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i  120 (340)
                      ...|++++|+|||+|..|..-|.+|--+|+..+
T Consensus        31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv   63 (487)
T PRK05225         31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS   63 (487)
T ss_pred             hHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence            478999999999999999999999999998644

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.45  E-value=0.37  Score=47.57  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=28.0

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +...+|+|||. |.+|..+++.|....-.+|+.+|.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            45678999999 999999999999753345777775

>PRK08251 short chain dehydrogenase; Provisional

Probab=93.43  E-value=0.62  Score=42.16  Aligned_cols=79  Identities=16%  Similarity=0.257  Sum_probs=52.9

Q ss_pred             CCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +++|+|.| .|++|..+++.|+..|. ++.+++.+.                   .+.+.+...+.+.+|...+..+..+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D   61 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD   61 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence            56789998 56799999999999995 677776431                   2334455566666777777777666


Q ss_pred             CCccc-HH-------hhcccCcEEEEcC
Q 019513          172 LRTSN-AL-------EILSQYEIVVDAT  191 (340)
Q Consensus       172 ~~~~~-~~-------~~l~~~DlVi~~t  191 (340)
                      ++... ..       +.+...|+||.+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a   89 (248)
T PRK08251         62 VNDHDQVFEVFAEFRDELGGLDRVIVNA   89 (248)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66432 11       1234578888775

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.36  E-value=0.26  Score=49.23  Aligned_cols=89  Identities=17%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||.|.+|..+|+.|...|. ++..+|...             ....                ..+.    
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~-------------~~~~----------------~~~~----  192 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED-------------KLPL----------------GNAR----  192 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc-------------cccc----------------CCce----
Confidence            46999999999999999999999999997 466666310             0000                0000    


Q ss_pred             cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~  215 (340)
                          ......++++.+|+|+.+.- +..++.++++.....   +.-+|+.+
T Consensus       193 ----~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a  239 (409)
T PRK11790        193 ----QVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS  239 (409)
T ss_pred             ----ecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence                01245678888998776654 466888887654332   34456544

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.35  E-value=0.61  Score=47.76  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            479999999999999999999997 68888864

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.34  E-value=0.43  Score=45.09  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=59.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|.|||+|.+|+.++..|+..|. +++++|.+.-....+.        ..|...+....+.++  +.++-+...+....-
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~--------~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~   69 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELL--------AAGAVTAETARQVTE--QADVIFTMVPDSPQV   69 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHH--------HCCCcccCCHHHHHh--cCCEEEEecCCHHHH
Confidence            58999999999999999999995 6888876532111111        112222222222222  234444433321110


Q ss_pred             -------ccHHhhcccCcEEEEcCCChh-hHHHHHHHHHHcCCcEEEEeec
Q 019513          175 -------SNALEILSQYEIVVDATDNAP-SRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       175 -------~~~~~~l~~~DlVi~~tD~~~-~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                             +.....+..-.+||+++...+ ....+.+.+...+..|+++-..
T Consensus        70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~  120 (291)
T TIGR01505        70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS  120 (291)
T ss_pred             HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCC
Confidence                   001112233457777654433 3345666677778888875444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=93.34  E-value=0.49  Score=44.69  Aligned_cols=93  Identities=18%  Similarity=0.184  Sum_probs=52.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ||+|+|+ |-+|+.+...|...|..-+.+ +..                ++.....+.+.+.+.+..|++-|+.-..  +
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~--~   62 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIAT-SRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAAY--T   62 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STT----------------CS-TTSHHHHHHHHHHH--SEEEE-------
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cch----------------hcCCCCHHHHHHHHHHhCCCeEecccee--e
Confidence            7999996 559999999999877543332 322                2222345677777777766654443211  0


Q ss_pred             cccHHhhcccCcEEEEcCCChh--------hHHHHHHHHHHcCCcEEEEeecC
Q 019513          174 TSNALEILSQYEIVVDATDNAP--------SRYMISDCCVVLGKPLVSGAALG  218 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~--------~r~~i~~~~~~~~~p~i~~~~~g  218 (340)
                      .-+   .         |-.++.        .-..|.++|...+.++|+.++..
T Consensus        63 ~~~---~---------ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~  103 (286)
T PF04321_consen   63 NVD---A---------CEKNPEEAYAINVDATKNLAEACKERGARLIHISTDY  103 (286)
T ss_dssp             -HH---H---------HHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGG
T ss_pred             cHH---h---------hhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccE
Confidence            000   0         001122        22346788999999999987754

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=93.27  E-value=0.67  Score=42.27  Aligned_cols=80  Identities=20%  Similarity=0.226  Sum_probs=48.8

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +++|+|.|+ |++|..+++.|+..|. ++.++|.+.                   .+.+...+.+...++..++..+..+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D   61 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINS-------------------EKAANVAQEINAEYGEGMAYGFGAD   61 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHhcCCceeEEEEcc
Confidence            467999987 4699999999999996 677777432                   1233344455544433345555555


Q ss_pred             CCcc-cHH-------hhcccCcEEEEcCC
Q 019513          172 LRTS-NAL-------EILSQYEIVVDATD  192 (340)
Q Consensus       172 ~~~~-~~~-------~~l~~~DlVi~~tD  192 (340)
                      ++.. ...       +.+...|+||.+..
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~id~vv~~ag   90 (259)
T PRK12384         62 ATSEQSVLALSRGVDEIFGRVDLLVYNAG   90 (259)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5532 111       12245788887764

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.27  E-value=0.27  Score=47.06  Aligned_cols=78  Identities=21%  Similarity=0.257  Sum_probs=56.4

Q ss_pred             HcccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      -.|++++|+|||.| -+|.+++.+|...|. .+++++..+                                        
T Consensus       155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t----------------------------------------  193 (301)
T PRK14194        155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS----------------------------------------  193 (301)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC----------------------------------------
Confidence            36899999999997 689999999999995 577764221                                        


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                             .+..+..+.+|+||.++..+.   .+...-.+.|.-+|+.+..
T Consensus       194 -------~~l~e~~~~ADIVIsavg~~~---~v~~~~ik~GaiVIDvgin  233 (301)
T PRK14194        194 -------TDAKALCRQADIVVAAVGRPR---LIDADWLKPGAVVIDVGIN  233 (301)
T ss_pred             -------CCHHHHHhcCCEEEEecCChh---cccHhhccCCcEEEEeccc
Confidence                   134556678999999988764   3333335666777776643

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=93.25  E-value=0.51  Score=43.15  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r   44 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR   44 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            4578899999995 7799999999999997 5777664

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.24  E-value=0.64  Score=48.23  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +.||+|+|+|.+|..+++.|...|. .+.++|.|.                   .|++.+    ++.  +  +.++..+.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~-------------------~~~~~~----~~~--g--~~~i~GD~  468 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR-------------------TRVDEL----RER--G--IRAVLGNA  468 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHH----HHC--C--CeEEEcCC
Confidence            5789999999999999999999996 589999764                   123333    222  1  33344444


Q ss_pred             CcccHHh--hcccCcEEEEcCCChhhH
Q 019513          173 RTSNALE--ILSQYEIVVDATDNAPSR  197 (340)
Q Consensus       173 ~~~~~~~--~l~~~DlVi~~tD~~~~r  197 (340)
                      ++.+..+  -++++|.|+.++++....
T Consensus       469 ~~~~~L~~a~i~~a~~viv~~~~~~~~  495 (558)
T PRK10669        469 ANEEIMQLAHLDCARWLLLTIPNGYEA  495 (558)
T ss_pred             CCHHHHHhcCccccCEEEEEcCChHHH
Confidence            4433322  346899887777665443

>PLN02780 ketoreductase/ oxidoreductase

Probab=93.23  E-value=0.55  Score=45.10  Aligned_cols=62  Identities=26%  Similarity=0.286  Sum_probs=44.3

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .++.|+|.|+ ||+|.++|+.|+..|. ++.+++.+.                   .|.+.+++.+++.++..++..+..
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~  111 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVV  111 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence            4678999996 5799999999999997 588876431                   355666677776666556655554


Q ss_pred             cCC
Q 019513          171 ALR  173 (340)
Q Consensus       171 ~~~  173 (340)
                      +++
T Consensus       112 Dl~  114 (320)
T PLN02780        112 DFS  114 (320)
T ss_pred             ECC
Confidence            444

>cd00704 MDH Malate dehydrogenase

Probab=93.21  E-value=0.13  Score=49.69  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGR------LGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~------i~lvD~D  126 (340)
                      .||+|+|+ |.+|+.++..|+..|+-.      |.|+|.+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~   40 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP   40 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence            37999999 999999999999988754      9999864

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05442 malate dehydrogenase; Provisional

Probab=93.19  E-value=0.23  Score=48.16  Aligned_cols=32  Identities=28%  Similarity=0.494  Sum_probs=28.3

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGv-g-----~i~lvD~  125 (340)
                      .||.|+|+ |.+|+.+|..|+..|+ +     +|.|+|-
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi   43 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI   43 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence            58999998 9999999999998887 4     6999884

>PLN02928 oxidoreductase family protein

Probab=93.18  E-value=0.1  Score=50.98  Aligned_cols=104  Identities=20%  Similarity=0.220  Sum_probs=61.3

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||.|.+|..+|+.|...|. ++..+|.-. .     +..   ....|.+            .+.+.... 
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~-~-----~~~---~~~~~~~------------~~~~~~~~-  211 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW-T-----SEP---EDGLLIP------------NGDVDDLV-  211 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-C-----hhh---hhhhccc------------cccccccc-
Confidence            46999999999999999999999999997 677766420 0     000   0000000            00000000 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHH---cCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVV---LGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~---~~~p~i~~~  215 (340)
                      ..........++++.+|+|+.+.- +..++.+|++....   .+.-+|+.+
T Consensus       212 ~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        212 DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA  262 (347)
T ss_pred             cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence            000123456788899999888764 46678888764433   244466644

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.18  E-value=0.78  Score=44.74  Aligned_cols=38  Identities=21%  Similarity=0.195  Sum_probs=27.9

Q ss_pred             HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          178 LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       178 ~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                      .+++.++|+|++||.....+. ....+.+.|+++|+.+.
T Consensus        73 ~el~~~vDVVIdaT~~~~~~e-~a~~~~~aGk~VI~~~~  110 (341)
T PRK04207         73 EDLLEKADIVVDATPGGVGAK-NKELYEKAGVKAIFQGG  110 (341)
T ss_pred             hHhhccCCEEEECCCchhhHH-HHHHHHHCCCEEEEcCC
Confidence            445578999999998765554 44577778899887554

>PRK06139 short chain dehydrogenase; Provisional

Probab=93.16  E-value=0.42  Score=46.20  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=29.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R   39 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR   39 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            467889999998 6799999999999996 4777664

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=93.14  E-value=0.32  Score=45.73  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=63.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEE---EEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLG---IVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~---lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .||.|||+|.+|..++..|..-+...+.   +.|.+.-..    +.+      .+..++-.--+.|....|++-|++-..
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~----~~~------~~~~~~~~~l~~ll~~~~DlVVE~A~~   72 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP----PAL------AGRVALLDGLPGLLAWRPDLVVEAAGQ   72 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH----HHh------hccCcccCCHHHHhhcCCCEEEECCCH
Confidence            5899999999999999998765433233   233221000    000      111221111233334567776665544


Q ss_pred             cCCcccHHhhcc-cCcEEEEcCCChh---hHHHHHHHHHHcCCcEE
Q 019513          171 ALRTSNALEILS-QYEIVVDATDNAP---SRYMISDCCVVLGKPLV  212 (340)
Q Consensus       171 ~~~~~~~~~~l~-~~DlVi~~tD~~~---~r~~i~~~~~~~~~p~i  212 (340)
                      ..-.+....+++ +.|+|+..+.-+.   .+..+.+.|++.+..+.
T Consensus        73 ~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~  118 (267)
T PRK13301         73 QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIR  118 (267)
T ss_pred             HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEE
Confidence            444455666775 7899988766554   45567788888775543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=93.11  E-value=0.78  Score=46.54  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             CCCCHHHHhhhhhhccCC-CC-CHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           64 YGLSPDMIYRYSRHLLLP-SF-GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~-~~-G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++=..++||.-..... .| .......-..++|+|||+|..|..+|..|++.|. +++++|..
T Consensus       112 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~  175 (471)
T PRK12810        112 GPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA  175 (471)
T ss_pred             CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            456667777876433210 01 1110112245789999999999999999999997 59999864

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.10  E-value=0.61  Score=45.13  Aligned_cols=34  Identities=35%  Similarity=0.510  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3679999999999999999888999887877764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK06181 short chain dehydrogenase; Provisional

Probab=93.09  E-value=0.53  Score=43.08  Aligned_cols=77  Identities=16%  Similarity=0.299  Sum_probs=47.5

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ++|+|.|+ |++|..+++.|+..|. +++++|.+.                   .+.+.+.+.+.....  .+..+..++
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~~~Dl   59 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNE-------------------TRLASLAQELADHGG--EALVVPTDV   59 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--cEEEEEccC
Confidence            57899997 7799999999999996 677776431                   234444555555443  333344444


Q ss_pred             Cc-ccHHhh-------cccCcEEEEcCC
Q 019513          173 RT-SNALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       173 ~~-~~~~~~-------l~~~DlVi~~tD  192 (340)
                      .. +....+       +.+.|+||.+..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~id~vi~~ag   87 (263)
T PRK06181         60 SDAEACERLIEAAVARFGGIDILVNNAG   87 (263)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            43 222222       235788888864

>PRK08339 short chain dehydrogenase; Provisional

Probab=93.09  E-value=0.52  Score=43.55  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |+++.++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~   41 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN   41 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            67788999987 5799999999999996 57777643

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=93.08  E-value=0.4  Score=51.45  Aligned_cols=39  Identities=26%  Similarity=0.320  Sum_probs=35.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~  127 (340)
                      ++|.+.||++.|+|..|..+++.|...|+.  +|.++|..-
T Consensus       181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G  221 (752)
T PRK07232        181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG  221 (752)
T ss_pred             CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence            578999999999999999999999999995  899999654

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=93.06  E-value=0.42  Score=45.20  Aligned_cols=29  Identities=34%  Similarity=0.417  Sum_probs=24.7

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|+|.|+ |-+|+.+++.|...|  +++.+|.
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~   31 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG--NLIALDV   31 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC--CEEEecc
Confidence            6999997 679999999999888  5777774

>PLN02572 UDP-sulfoquinovose synthase

Probab=93.05  E-value=1.4  Score=44.34  Aligned_cols=36  Identities=36%  Similarity=0.488  Sum_probs=30.4

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .++++++|+|.|+ |.+|+.+++.|+..|. ++.++|.
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~   79 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN   79 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence            4677788999996 7799999999999995 5888884

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.05  E-value=0.6  Score=36.76  Aligned_cols=71  Identities=11%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             ccHHHHHHHHHhhCCCceEEEe--cccCCccc--HHhhcccCcEEEEcCCChh--hHHHHHHHHHHcCCcEEEEeecCc
Q 019513          147 SKVKSAAATCRSINSTVHIIEH--REALRTSN--ALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       147 ~Ka~~a~~~L~~lnp~v~i~~~--~~~~~~~~--~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ......++.+++.+  .+...+  +.......  ....+++.|+||..||...  ..+.+.+.|.+.++|++.....|+
T Consensus        10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~   86 (97)
T PF10087_consen   10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV   86 (97)
T ss_pred             ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence            55666777777754  455555  34444433  6778899999999999754  566789999999999998765443

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=93.04  E-value=0.3  Score=47.30  Aligned_cols=91  Identities=5%  Similarity=0.076  Sum_probs=55.6

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|.+++|.|||.|.+|..+|+.|. ..|+ ++...|.-.                    +.+..    ...  .++   
T Consensus       141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~--------------------~~~~~----~~~--~~~---  190 (323)
T PRK15409        141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRH--------------------HKEAE----ERF--NAR---  190 (323)
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCC--------------------chhhH----Hhc--CcE---
Confidence            3699999999999999999999987 5665 344443210                    00000    000  111   


Q ss_pred             ecccCCcccHHhhcccCcEEEEcC-CChhhHHHHHHHHHHc---CCcEEEEe
Q 019513          168 HREALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVVL---GKPLVSGA  215 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~t-D~~~~r~~i~~~~~~~---~~p~i~~~  215 (340)
                            .....++++.+|+|+.+. -++.++.+|++.....   +.-+|+.+
T Consensus       191 ------~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a  236 (323)
T PRK15409        191 ------YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG  236 (323)
T ss_pred             ------ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence                  123567788899877654 5577888887654432   33456543

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=93.04  E-value=1.2  Score=41.80  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|++++|+|.|.|.+|+.+|+.|...|..-+.+-|.
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~   70 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS   70 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999999999999999999999877767774

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.03  E-value=0.13  Score=49.39  Aligned_cols=33  Identities=30%  Similarity=0.494  Sum_probs=29.2

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeCC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVG-RLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D  126 (340)
                      .+|.|+|+ |.+|+.++..|+..|+. ++.++|.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~   35 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP   35 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence            37999998 99999999999999974 79999963

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=93.03  E-value=0.16  Score=50.06  Aligned_cols=43  Identities=23%  Similarity=0.502  Sum_probs=34.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCcc
Q 019513           93 KSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHR  135 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~R  135 (340)
                      ...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-...-.|
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~   73 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGR   73 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCccccc
Confidence            45799999999999999999984 87789999988764433333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK07035 short chain dehydrogenase; Provisional

Probab=92.99  E-value=0.57  Score=42.57  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=29.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r   40 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR   40 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            467889999985 5699999999999996 6888764

>PRK06436 glycerate dehydrogenase; Provisional

Probab=92.98  E-value=0.11  Score=49.85  Aligned_cols=42  Identities=24%  Similarity=0.369  Sum_probs=33.6

Q ss_pred             CCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           83 FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        83 ~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |.......|.+++|.|+|.|.+|.++|+.|...|. ++..+|.
T Consensus       112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r  153 (303)
T PRK06436        112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR  153 (303)
T ss_pred             CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            43333357999999999999999999998888887 5667764

>PRK12861 malic enzyme; Reviewed

Probab=92.98  E-value=0.4  Score=51.44  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=35.7

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~  127 (340)
                      ++|++.||++.|+|+.|..+++.|...|+.  +|.++|..-
T Consensus       185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~G  225 (764)
T PRK12861        185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEG  225 (764)
T ss_pred             CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCC
Confidence            578999999999999999999999999996  899999554

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=92.94  E-value=0.67  Score=43.19  Aligned_cols=83  Identities=14%  Similarity=0.092  Sum_probs=52.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+.+|.|||+|-+|+.++..|...|+   .++.++|.+.-              ..+                   +.. 
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~--------------~~~-------------------~~~-   47 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK--------------NTP-------------------FVY-   47 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh--------------cCC-------------------eEE-
Confidence            34579999999999999999999884   23666554220              000                   011 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVS  213 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~  213 (340)
                          . .+..+.++++|+||.|+.....+..+.++... .+..+|+
T Consensus        48 ----~-~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS   88 (260)
T PTZ00431         48 ----L-QSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLIS   88 (260)
T ss_pred             ----e-CChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEE
Confidence                0 11233456789999998877777777765432 2344555

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=92.90  E-value=0.16  Score=49.36  Aligned_cols=44  Identities=25%  Similarity=0.430  Sum_probs=36.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQ  136 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq  136 (340)
                      ...+|+|||+|-+|..+|.+|++.|. +++++|.+.+...+-.|.
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~~   46 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGRN   46 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhcc
Confidence            46789999999999999999999998 999999888754444333

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=92.89  E-value=0.58  Score=52.06  Aligned_cols=97  Identities=12%  Similarity=0.168  Sum_probs=55.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++++|+|||+|..|..+|.+|++.|. +++|+|....--.-+...+  .....++.-++...+.++++  .+++..-. .
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~gi--p~~rl~~e~~~~~~~~l~~~--Gv~~~~~~-~  502 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQYGI--PSFRLPRDIIDREVQRLVDI--GVKIETNK-V  502 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeeccC--CccCCCHHHHHHHHHHHHHC--CCEEEeCC-c
Confidence            46799999999999999999999996 6999986532111111111  11112222233344455554  35543321 1


Q ss_pred             CCcc-cHHhhc--ccCcEEEEcCCCh
Q 019513          172 LRTS-NALEIL--SQYEIVVDATDNA  194 (340)
Q Consensus       172 ~~~~-~~~~~l--~~~DlVi~~tD~~  194 (340)
                      +..+ ...++.  .+||-||.+|...
T Consensus       503 vg~~~~~~~l~~~~~yDaViIATGa~  528 (1006)
T PRK12775        503 IGKTFTVPQLMNDKGFDAVFLGVGAG  528 (1006)
T ss_pred             cCCccCHHHHhhccCCCEEEEecCCC
Confidence            1111 223333  3699999999873

>PRK14031 glutamate dehydrogenase; Provisional

Probab=92.89  E-value=0.42  Score=48.25  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=33.2

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|.|-+|+.+|+.|...|..-+.+-|.+
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~  261 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD  261 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5899999999999999999999999998877777743

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=92.84  E-value=0.72  Score=43.89  Aligned_cols=121  Identities=18%  Similarity=0.224  Sum_probs=69.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC-
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR-  173 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~-  173 (340)
                      +|.+||+|-+|..++.+|...|. +++++|.+.    +.  ..+.   ..|-..+....+.++  ..++-+...+.... 
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~--~~~~---~~g~~~~~s~~~~~~--~advVi~~v~~~~~v   69 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VA--DELL---SLGAVSVETARQVTE--ASDIIFIMVPDTPQV   69 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hH--HHHH---HcCCeecCCHHHHHh--cCCEEEEeCCChHHH
Confidence            59999999999999999999996 677887543    11  1111   233333333333322  23444433332200 


Q ss_pred             ------cccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEe
Q 019513          174 ------TSNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN  227 (340)
Q Consensus       174 ------~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~  227 (340)
                            +......+..-.+|||++-. +.+-..+.+.+...|..++++-..|.     .|.+.++.
T Consensus        70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~  135 (292)
T PRK15059         70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMV  135 (292)
T ss_pred             HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEE
Confidence                  00011112334578887655 44555688888888999988654432     46665554

>PRK07814 short chain dehydrogenase; Provisional

Probab=92.84  E-value=0.61  Score=42.88  Aligned_cols=35  Identities=34%  Similarity=0.483  Sum_probs=29.6

Q ss_pred             ccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++++|+|.|++ ++|..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~   43 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART   43 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            678899999966 599999999999997 78777653

>PRK13984 putative oxidoreductase; Provisional

Probab=92.83  E-value=0.52  Score=49.32  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +.++|+|||+|..|..+|..|.+.|+ +++|+|.+.
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~  316 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS  316 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            56789999999999999999999997 588887554

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.81  E-value=1.2  Score=44.10  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      -+..+|+|+|+ |.+|+.+++.|...|. ++.+++.
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R   92 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR   92 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence            34568999997 6699999999999995 4666654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.81  E-value=0.56  Score=42.15  Aligned_cols=31  Identities=32%  Similarity=0.492  Sum_probs=26.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRL  120 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i  120 (340)
                      .|.+++|+|+|+ |++|..+++.|+..|...+
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~   33 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVV   33 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            467789999996 7899999999999997533

>PRK06392 homoserine dehydrogenase; Provisional

Probab=92.80  E-value=0.74  Score=44.65  Aligned_cols=20  Identities=30%  Similarity=0.522  Sum_probs=18.9

Q ss_pred             cEEEEcCChhHHHHHHHHHH
Q 019513           95 SILVIGAGGLGSPALLYLAA  114 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~  114 (340)
                      +|+|+|+|.+|+.+++.|..
T Consensus         2 rVaIiGfG~VG~~va~~L~~   21 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKS   21 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHh
Confidence            79999999999999999987

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=92.79  E-value=1.1  Score=40.71  Aligned_cols=91  Identities=23%  Similarity=0.282  Sum_probs=57.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .++.|+|.|-+|+.++..|+.+|. +++|--                  .=+..+.+++++   .+.|.         ++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~-eV~igs------------------~r~~~~~~a~a~---~l~~~---------i~   50 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGH-EVIIGS------------------SRGPKALAAAAA---ALGPL---------IT   50 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCC-eEEEec------------------CCChhHHHHHHH---hhccc---------cc
Confidence            468999999999999999999993 344311                  111223333333   33333         23


Q ss_pred             cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEEEe
Q 019513          174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGA  215 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~~~  215 (340)
                      .....+-.+..|+||.++--......+.++.-.. ++-+|+..
T Consensus        51 ~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t   93 (211)
T COG2085          51 GGSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT   93 (211)
T ss_pred             cCChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecC
Confidence            3334555678999999988766666666666545 47777754

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.79  E-value=0.61  Score=45.68  Aligned_cols=33  Identities=30%  Similarity=0.185  Sum_probs=27.6

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++++|+|.|+ |-+|+.+++.|...|. +++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            4578999997 6699999999999984 5777774

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.75  E-value=0.65  Score=46.49  Aligned_cols=35  Identities=29%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      -.+|.|||+|-+|.++|..|+..| -+++.+|.|.-
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCC-CEEEEEeCCHH
Confidence            367999999999999999999999 46888886553

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=92.73  E-value=0.58  Score=37.86  Aligned_cols=85  Identities=19%  Similarity=0.268  Sum_probs=47.1

Q ss_pred             cCChhHHHHHHHHHHc----CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCcc
Q 019513          100 GAGGLGSPALLYLAAC----GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS  175 (340)
Q Consensus       100 G~GglGs~va~~La~a----Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~  175 (340)
                      |+|.+|+.+++.|...    ++.-..|.|.+..          ... +           ...... ...        ...
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~----------~~~-~-----------~~~~~~-~~~--------~~~   49 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSML----------ISK-D-----------WAASFP-DEA--------FTT   49 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEE----------EET-T-----------HHHHHT-HSC--------EES
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCch----------hhh-h-----------hhhhcc-ccc--------ccC
Confidence            8999999999999976    4555666664410          000 0           111111 111        113


Q ss_pred             cHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          176 NALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       176 ~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                      +..+++.  +.|+||+|+.......++ ..+.+.|+.+|.++.
T Consensus        50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~-~~~L~~G~~VVt~nk   91 (117)
T PF03447_consen   50 DLEELIDDPDIDVVVECTSSEAVAEYY-EKALERGKHVVTANK   91 (117)
T ss_dssp             SHHHHHTHTT-SEEEE-SSCHHHHHHH-HHHHHTTCEEEES-H
T ss_pred             CHHHHhcCcCCCEEEECCCchHHHHHH-HHHHHCCCeEEEECH
Confidence            3455555  799999998775554433 456778999998653

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PLN02214 cinnamoyl-CoA reductase

Probab=92.73  E-value=1.3  Score=42.73  Aligned_cols=105  Identities=11%  Similarity=0.082  Sum_probs=59.6

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++++|+|.|+ |.+|+.+++.|...|. ++..++.+.   ++              .+. .....+....+  .+..+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~--------------~~~-~~~~~~~~~~~--~~~~~~   66 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DD--------------PKN-THLRELEGGKE--RLILCK   66 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hh--------------hhH-HHHHHhhCCCC--cEEEEe
Confidence            46788999998 7799999999999995 455544321   00              000 01111111111  234444


Q ss_pred             ccCCc-ccHHhhcccCcEEEEcCCCh----h--------hHHHHHHHHHHcCC-cEEEEee
Q 019513          170 EALRT-SNALEILSQYEIVVDATDNA----P--------SRYMISDCCVVLGK-PLVSGAA  216 (340)
Q Consensus       170 ~~~~~-~~~~~~l~~~DlVi~~tD~~----~--------~r~~i~~~~~~~~~-p~i~~~~  216 (340)
                      .+++. +...+.++++|+||.+....    .        .-..+-++|.+.++ .+|..++
T Consensus        67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS  127 (342)
T PLN02214         67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS  127 (342)
T ss_pred             cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence            44543 34456678899999886421    1        11234567777775 4776554

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=92.73  E-value=0.28  Score=46.95  Aligned_cols=69  Identities=22%  Similarity=0.318  Sum_probs=47.5

Q ss_pred             EEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC----CceEEEecccC
Q 019513           98 VIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIEHREAL  172 (340)
Q Consensus        98 VvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp----~v~i~~~~~~~  172 (340)
                      |||+|.+|+.+|..|+..|+ .+|.|+|-                   -..|++..+.-|....+    ++++..     
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~-----   56 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS-----   56 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec-----
Confidence            68999999999999999997 57999974                   22345555555555432    233321     


Q ss_pred             CcccHHhhcccCcEEEEcCCC
Q 019513          173 RTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~  193 (340)
                         ...+.++++|+||.+...
T Consensus        57 ---~~~~~~~daDivVitag~   74 (299)
T TIGR01771        57 ---GDYSDCKDADLVVITAGA   74 (299)
T ss_pred             ---CCHHHHCCCCEEEECCCC
Confidence               114567899999987765

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.70  E-value=0.14  Score=45.16  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=26.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +|.|||+|.+|..+|..++++|. +++++|.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            69999999999999999999994 599999755

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=92.69  E-value=0.75  Score=48.73  Aligned_cols=63  Identities=22%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             CCCCHHHHhhhhhhccCC-CCCH-HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           64 YGLSPDMIYRYSRHLLLP-SFGV-EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~-~~G~-~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+++-..++||....... .+.. .....-..++|+|||+|..|..+|..|++.|. +++|+|...
T Consensus       162 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~  226 (652)
T PRK12814        162 EPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE  226 (652)
T ss_pred             CCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            456667778886532110 0110 00112245799999999999999999999996 599998653

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.69  E-value=0.62  Score=47.30  Aligned_cols=36  Identities=19%  Similarity=0.031  Sum_probs=30.8

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +++++|+|+|+|--|..+++.|...|.. +++.|.+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~   41 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCN   41 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCC
Confidence            4678999999999999999999999976 77777543

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=92.68  E-value=0.64  Score=41.96  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=28.0

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |++++|+|.|+ |++|+.+++.|+..|. ++.++|.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r   35 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL   35 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence            56889999995 6699999999999986 4666653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07774 short chain dehydrogenase; Provisional

Probab=92.68  E-value=0.75  Score=41.57  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=29.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~   39 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN   39 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            356789999997 8899999999999995 57777643

>PRK06914 short chain dehydrogenase; Provisional

Probab=92.68  E-value=0.78  Score=42.42  Aligned_cols=34  Identities=29%  Similarity=0.265  Sum_probs=26.8

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4567899985 6799999999999996 46666543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=92.68  E-value=0.36  Score=46.79  Aligned_cols=89  Identities=19%  Similarity=0.275  Sum_probs=55.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..+.+++|.|+|.|.+|..+|+.+.  |+| +|...|...        +          ++.+.      +.+       
T Consensus       142 ~~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~--------~----------~~~~~------~~~-------  188 (324)
T COG1052         142 FDLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSP--------N----------PEAEK------ELG-------  188 (324)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCC--------C----------hHHHh------hcC-------
Confidence            4689999999999999999999999  554 344433221        0          00000      000       


Q ss_pred             ecccCCcccHHhhcccCcEE-EEcCCChhhHHHHHHHHHHcC---CcEEEE
Q 019513          168 HREALRTSNALEILSQYEIV-VDATDNAPSRYMISDCCVVLG---KPLVSG  214 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlV-i~~tD~~~~r~~i~~~~~~~~---~p~i~~  214 (340)
                          ...-...++++.+|+| +.|-.+..++.+||..-.+.=   .-+|+.
T Consensus       189 ----~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt  235 (324)
T COG1052         189 ----ARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT  235 (324)
T ss_pred             ----ceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence                0111156778889965 456677889999997665543   335554

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.66  E-value=0.77  Score=43.19  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=26.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+|.|+ |.+|+.+++.|+..|. ++.++|..
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~   33 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP   33 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence            6899986 7799999999999995 67777754

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.64  E-value=0.15  Score=52.44  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -++|.|||+|..|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~   37 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR   37 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            4679999999999999999999995 47888754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=92.64  E-value=0.76  Score=46.29  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=27.4

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +..+|+|.|+ |-+|+.+++.|...|. ++..+|.+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~  153 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF  153 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4568999996 5599999999999985 57777754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=92.60  E-value=0.44  Score=52.76  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      -.+++|+|||+|..|..+|.+|++.|. +++|+|...
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~  572 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE  572 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence            356899999999999999999999996 699998643

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=92.59  E-value=0.16  Score=49.23  Aligned_cols=35  Identities=37%  Similarity=0.541  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      ...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            4579999999999999999999996 6999998754

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.59  E-value=1.9  Score=41.66  Aligned_cols=32  Identities=25%  Similarity=0.204  Sum_probs=25.5

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .+.+|+|.|+ |.+|+.+++.|+..|. ++.+++
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~   41 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATL   41 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            3568999995 6799999999999986 455544

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=92.59  E-value=0.45  Score=47.78  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=51.5

Q ss_pred             cEEEEcCChhHHHHHH--HHH---HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH----HHHHHhhCCCceE
Q 019513           95 SILVIGAGGLGSPALL--YLA---ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA----AATCRSINSTVHI  165 (340)
Q Consensus        95 ~VlVvG~GglGs~va~--~La---~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a----~~~L~~lnp~v~i  165 (340)
                      +|.|||+|++|...+.  .|+   .....++.|+|.|.                   .+.+..    .+.+....+..++
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~-------------------e~l~~~~~~~~~~~~~~~~~~~I   62 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE-------------------ERLETVEILAKKIVEELGAPLKI   62 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH-------------------HHHHHHHHHHHHHHHhcCCCeEE
Confidence            6999999999987665  454   22225899998553                   112222    2333333333444


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCCChhhHHHHH--HHHHHcCC
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATDNAPSRYMIS--DCCVVLGK  209 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~--~~~~~~~~  209 (340)
                      ...      .+..+.++++|+||.+.-....+....  +...++++
T Consensus        63 ~~t------tD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~  102 (423)
T cd05297          63 EAT------TDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGY  102 (423)
T ss_pred             EEe------CCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCe
Confidence            321      234566789999999876533333333  25555554

linked to 3D####ucture

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.55  E-value=0.51  Score=47.09  Aligned_cols=34  Identities=29%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +.++|+|+|.|+.|..+|+.|...|. +++.+|.+
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~   35 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKS   35 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45789999999999999999999996 58888854

>PLN02253 xanthoxin dehydrogenase

Probab=92.55  E-value=0.81  Score=42.37  Aligned_cols=35  Identities=31%  Similarity=0.502  Sum_probs=28.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~   50 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL   50 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            467788999985 6799999999999995 5777764

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=92.54  E-value=0.8  Score=46.14  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=30.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~  172 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR  172 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence            46789999999999999999999995 68998854

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.53  E-value=0.5  Score=43.85  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=28.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +|+|||+|..|.++|..|.+.|.. ++|+|...
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME   33 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence            699999999999999999999975 99999654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=92.53  E-value=0.85  Score=42.94  Aligned_cols=81  Identities=23%  Similarity=0.320  Sum_probs=60.2

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      ++.++++|-|+ +|+|-++|+.|++-|. ++.||-.+                   +.|-+.+++.|+... .++++.+.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~-------------------~~kL~~la~~l~~~~-~v~v~vi~   62 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARR-------------------EDKLEALAKELEDKT-GVEVEVIP   62 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-------------------HHHHHHHHHHHHHhh-CceEEEEE
Confidence            56789999996 5799999999999995 46665422                   357788888998887 78888888


Q ss_pred             ccCCcccHHhhc--------ccCcEEEEcCC
Q 019513          170 EALRTSNALEIL--------SQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~~~~~~l--------~~~DlVi~~tD  192 (340)
                      .+++..+..+.+        -..|++|++..
T Consensus        63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG   93 (265)
T COG0300          63 ADLSDPEALERLEDELKERGGPIDVLVNNAG   93 (265)
T ss_pred             CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence            888754332221        15888888754

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.53  E-value=0.78  Score=42.27  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=28.7

Q ss_pred             cccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .++++.++|.|+   +|+|.++|+.|++.|. ++.+++
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~   40 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY   40 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence            367789999998   5999999999999996 566665

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.53  E-value=0.16  Score=52.54  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +++++|+|+|+||+|..++..|+..|+ ++.+++.
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            667899999999999999999999999 8998864

>PRK06046 alanine dehydrogenase; Validated

Probab=92.52  E-value=0.63  Score=44.98  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=52.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ...+|.|+|+|..|...+.+|. ..++..+.++|.+                   ..+++.+++.+.+..+ +.+..+. 
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~~~~-~~v~~~~-  186 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT-------------------KSSAEKFVERMSSVVG-CDVTVAE-  186 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-
Confidence            3578999999999999999987 4578889988744                   2456666666654322 3333222 


Q ss_pred             cCCcccHHhhcccCcEEEEcCCC
Q 019513          171 ALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                           +..+.++ .|+|+.||-+
T Consensus       187 -----~~~~~l~-aDiVv~aTps  203 (326)
T PRK06046        187 -----DIEEACD-CDILVTTTPS  203 (326)
T ss_pred             -----CHHHHhh-CCEEEEecCC
Confidence                 3345555 9999999876

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=92.52  E-value=0.17  Score=43.41  Aligned_cols=109  Identities=16%  Similarity=0.103  Sum_probs=55.0

Q ss_pred             cEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|.|+|+|.+|..+++.+.. .++.-+.+.|  ..++..+...+=| ++--|+.+...-     ..+-...+......+.
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d--~~~~~~~a~ll~~-Ds~hg~~~~~v~-----~~~~~l~i~g~~i~~~   73 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAIND--LTDPETLAHLLKY-DSVHGRFPGEVE-----VDEDGLIVNGKKIKVL   73 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeec--CCCHHHHHHHhcc-cCCCCCCCCcEE-----EeCCEEEECCEEEEEE
Confidence            69999999999999998874 4554455554  2344443332222 223455543211     0011111111111111


Q ss_pred             ----cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          174 ----TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       174 ----~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                          +.+..--..+.|+||+||..+.++.....+.. .|.+-|
T Consensus        74 ~~~~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~-~GakkV  115 (149)
T smart00846       74 AERDPANLPWKELGVDIVVECTGKFTTREKASAHLK-AGAKKV  115 (149)
T ss_pred             ecCChHHCcccccCCeEEEeccccccchHHHHHHHH-cCCCEE
Confidence                11111011367999999998887765544433 344433

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.49  E-value=0.2  Score=48.03  Aligned_cols=77  Identities=19%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ...++|+|+|.|-+|.+.|+..+..| ..++|+|.+.-..++|                       ..++ ..+++.  .
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~l-----------------------dd~f-~~rv~~--~  218 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQL-----------------------DDLF-GGRVHT--L  218 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhh-----------------------hHhh-CceeEE--E
Confidence            67899999999999999999999999 5689988543211111                       1111 111222  2


Q ss_pred             cCCcccHHhhcccCcEEEEcCCCh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .-++.++.+.+..+|+||.+.--+
T Consensus       219 ~st~~~iee~v~~aDlvIgaVLIp  242 (371)
T COG0686         219 YSTPSNIEEAVKKADLVIGAVLIP  242 (371)
T ss_pred             EcCHHHHHHHhhhccEEEEEEEec
Confidence            234577888899999999886544

>PRK05867 short chain dehydrogenase; Provisional

Probab=92.48  E-value=0.73  Score=41.99  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=28.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r   41 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR   41 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            367889999997 6799999999999996 4666653

>CHL00194 ycf39 Ycf39; Provisional

Probab=92.48  E-value=1.5  Score=41.74  Aligned_cols=95  Identities=17%  Similarity=0.201  Sum_probs=55.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|.|+ |-+|+.++..|...|. +++.++.+.                   .+.    ..+..  +.++  .+..+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~----~~l~~--~~v~--~v~~Dl~   53 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKA----SFLKE--WGAE--LVYGDLS   53 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHh----hhHhh--cCCE--EEECCCC
Confidence            6999996 6699999999999995 466655321                   011    11111  1333  3333443


Q ss_pred             -cccHHhhcccCcEEEEcCCChh------------hHHHHHHHHHHcCC-cEEEEeec
Q 019513          174 -TSNALEILSQYEIVVDATDNAP------------SRYMISDCCVVLGK-PLVSGAAL  217 (340)
Q Consensus       174 -~~~~~~~l~~~DlVi~~tD~~~------------~r~~i~~~~~~~~~-p~i~~~~~  217 (340)
                       ++...+.++++|+||.+.....            .-..+-++|...++ .+|..++.
T Consensus        54 d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         54 LPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence             3445666788898888754221            11235567777775 46665543

>PLN02740 Alcohol dehydrogenase-like

Probab=92.46  E-value=1.1  Score=44.01  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|+.++..+|.
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~  231 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI  231 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence            3678999999999999999999999888888764

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.42  E-value=0.67  Score=41.99  Aligned_cols=34  Identities=38%  Similarity=0.455  Sum_probs=27.8

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r   36 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL   36 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            46789999995 7799999999999996 5666553

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=92.42  E-value=0.19  Score=47.55  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      .|+|||+|-+|+.+|..|++.|. +++|+|.+.+
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~   33 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDI   33 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSST
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccc
Confidence            48999999999999999999998 8999998865

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12829 short chain dehydrogenase; Provisional

Probab=92.42  E-value=0.7  Score=42.08  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..+++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r   43 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV   43 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence            4578899999996 56999999999999974 777763

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.37  E-value=0.86  Score=41.58  Aligned_cols=36  Identities=33%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|++   |+|..+++.|+..|. ++.+++..
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~   40 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS   40 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence            4677889999985   799999999999996 78887754

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=92.37  E-value=0.82  Score=42.36  Aligned_cols=30  Identities=30%  Similarity=0.406  Sum_probs=24.9

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|+|+|+ |.+|+.+++.|...|. ++++++.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r   31 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR-VVVALTS   31 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence            5899996 8899999999999984 5666654

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK07326 short chain dehydrogenase; Provisional

Probab=92.35  E-value=0.72  Score=41.34  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=27.6

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +.+.+|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r   38 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR   38 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence            45688999986 66999999999999974 776653

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=92.34  E-value=0.78  Score=35.99  Aligned_cols=91  Identities=20%  Similarity=0.269  Sum_probs=53.1

Q ss_pred             cCCcEEEEcCChhHHHHHHH-HHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLY-LAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~-La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +..+|+|+|+|++|..++.. ....|.+-..++|.|.              ..+|+.-.            .  +..+. 
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~i~------------g--ipV~~-   52 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKEIG------------G--IPVYG-   52 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSEET------------T--EEEES-
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcEEC------------C--EEeec-
Confidence            45789999999999988743 4568888889988553              22332110            1  22221 


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                        .-+.+.+.+ +.|+.|.|+....++..+. .+.+.|+..|...
T Consensus        53 --~~~~l~~~~-~i~iaii~VP~~~a~~~~~-~~~~~gIk~i~nf   93 (96)
T PF02629_consen   53 --SMDELEEFI-EIDIAIITVPAEAAQEVAD-ELVEAGIKGIVNF   93 (96)
T ss_dssp             --SHHHHHHHC-TTSEEEEES-HHHHHHHHH-HHHHTT-SEEEEE
T ss_pred             --cHHHhhhhh-CCCEEEEEcCHHHHHHHHH-HHHHcCCCEEEEe
Confidence              112333444 4888888885444444444 4455888776543

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=92.33  E-value=0.82  Score=41.71  Aligned_cols=36  Identities=33%  Similarity=0.485  Sum_probs=29.8

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+|++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r   40 (260)
T PRK12823          4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDR   40 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            3577889999986 6699999999999996 5777764

>PRK13243 glyoxylate reductase; Reviewed

Probab=92.31  E-value=0.18  Score=48.98  Aligned_cols=91  Identities=18%  Similarity=0.173  Sum_probs=57.9

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|...                    +....    ...  .+     
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~--------------------~~~~~----~~~--~~-----  193 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTR--------------------KPEAE----KEL--GA-----  193 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC--------------------ChhhH----HHc--CC-----
Confidence            46899999999999999999999999997 577766421                    00000    010  01     


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHH---cCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATDN-APSRYMISDCCVV---LGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~---~~~p~i~~~  215 (340)
                          ...+..++++.+|+|+.++-. ..++.+|++....   .+.-+|+.+
T Consensus       194 ----~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a  240 (333)
T PRK13243        194 ----EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA  240 (333)
T ss_pred             ----EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence                012345677889988877653 5567777654332   234456544

>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria

Probab=92.30  E-value=0.42  Score=47.40  Aligned_cols=59  Identities=22%  Similarity=0.334  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCccCC----CCCCCCCCCCCCCCHHHHh
Q 019513           14 LGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSN----GSYRPSSAVDYGLSPDMIY   72 (340)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~e~~   72 (340)
                      ..+|+.|++|++.|+.++.+|+++|+..+...+...+..+    ....|+.+..+.|++++..
T Consensus        24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~   86 (514)
T PF11336_consen   24 ADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDAT   86 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHH
Confidence            4788999999999999999999999877654432111111    1112333457889999983

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=92.28  E-value=0.81  Score=41.65  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=30.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~   44 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN   44 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence            367899999996 5699999999999997 68887754

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.28  E-value=0.59  Score=44.12  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=27.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|..++..|++.|. ++.++|.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~   34 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN   34 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            379999999999999999999996 47777754

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=92.23  E-value=0.83  Score=43.74  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=28.0

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +++++|+|.|+ |.+|+++++.|+..|. ++.++|.
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r   38 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIR   38 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEec
Confidence            46788999996 7799999999999996 4666664

>PRK08589 short chain dehydrogenase; Validated

Probab=92.19  E-value=0.73  Score=42.69  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=28.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      +|++++|+|.|+ ||+|.++++.|+..|. ++.+++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~   37 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD   37 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            467889999997 6799999999999996 566665

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=92.19  E-value=2  Score=40.78  Aligned_cols=29  Identities=34%  Similarity=0.497  Sum_probs=24.4

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      +|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~   31 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILD   31 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence            6999995 8899999999999985 466665

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.17  E-value=0.56  Score=45.18  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=28.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+.+ .|..+++++|.
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~  197 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGK  197 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            36799999999999998888876 67777888774

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=92.16  E-value=0.2  Score=49.48  Aligned_cols=33  Identities=36%  Similarity=0.440  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            489999999999999999999995 799999875

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.15  E-value=0.71  Score=43.83  Aligned_cols=83  Identities=23%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++++|.|+ ||+|..+++.|+..|. ++.++|...                  ..+++.+.+.++...  .++..
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~~   66 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS------------------ALDASDVLDEIRAAG--AKAVA   66 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc------------------hhHHHHHHHHHHhcC--CeEEE
Confidence            4577889999986 5699999999999997 466665321                  123445555555543  34444


Q ss_pred             ecccCCcc-cHHhh------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~------l~~~DlVi~~tD  192 (340)
                      +..++... ....+      +...|+||.+..
T Consensus        67 ~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG   98 (306)
T PRK07792         67 VAGDISQRATADELVATAVGLGGLDIVVNNAG   98 (306)
T ss_pred             EeCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            55555432 12111      346788887654

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=92.14  E-value=0.73  Score=47.63  Aligned_cols=39  Identities=23%  Similarity=0.231  Sum_probs=34.8

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHH----HcCC------CcEEEEeCCc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLA----ACGV------GRLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La----~aGv------g~i~lvD~D~  127 (340)
                      ++|++.+|++.|+|+.|..+|+.|+    +.|+      .+|.++|.+-
T Consensus       293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G  341 (559)
T PTZ00317        293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG  341 (559)
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence            5789999999999999999999988    4899      8999999664

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.09  E-value=1  Score=41.99  Aligned_cols=35  Identities=40%  Similarity=0.476  Sum_probs=30.1

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~  153 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP  153 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            36789999999999999999888999987887753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.04  E-value=0.19  Score=50.11  Aligned_cols=45  Identities=27%  Similarity=0.458  Sum_probs=38.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEe
Q 019513          256 LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI  301 (340)
Q Consensus       256 ~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l  301 (340)
                      +-.+.+.+|+++|+|+||+++.+.-|+.| .++||+.+..-.++++
T Consensus       479 lH~VsAfiGGiaaQEvIKLiTkQyvPidN-TFIfnGi~~~SaT~Kl  523 (523)
T KOG2016|consen  479 LHVVSAFIGGIAAQEVIKLITKQYVPIDN-TFIFNGITQESATFKL  523 (523)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhceecccc-eeEecccccccceecC
Confidence            34577899999999999999999999866 8889999987766653

>PRK06523 short chain dehydrogenase; Provisional

Probab=92.02  E-value=0.63  Score=42.48  Aligned_cols=37  Identities=24%  Similarity=0.386  Sum_probs=31.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++++++|+|.|+ |++|..+++.|+..|. ++.+++.+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~   43 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR   43 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence            477899999996 6799999999999997 588887653

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=91.99  E-value=1.4  Score=42.82  Aligned_cols=35  Identities=34%  Similarity=0.521  Sum_probs=32.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ...+|+|+|+||+|-.+..-+..+|.++|.-||-+
T Consensus       185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~  219 (366)
T COG1062         185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDIN  219 (366)
T ss_pred             CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCC
Confidence            46789999999999999999999999999999843

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=91.98  E-value=0.59  Score=45.53  Aligned_cols=91  Identities=12%  Similarity=0.181  Sum_probs=53.3

Q ss_pred             cEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|||+. .+|.++++.|...|...+.|+=             +.+..+.|+.=.         + ....+...+  ++
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~~~~~--~~   55 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKELEVNE--AK   55 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeEEEEe--CC
Confidence            68999965 5899999999987655443321             112223333111         0 112222111  11


Q ss_pred             cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                         . +.+.++|+||.|+.+..++.+.... .+.|..+|+.+
T Consensus        56 ---~-~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s   92 (339)
T TIGR01296        56 ---I-ESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT   92 (339)
T ss_pred             ---h-HHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence               1 2347899999999988777665544 45677888754

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.98  E-value=0.89  Score=40.91  Aligned_cols=36  Identities=31%  Similarity=0.548  Sum_probs=29.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~   40 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART   40 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            456788999985 4799999999999997 78888744

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=91.96  E-value=1.3  Score=41.35  Aligned_cols=92  Identities=23%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH-hhCCCceEEEecccC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR-SINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~-~lnp~v~i~~~~~~~  172 (340)
                      .+|+|+|--+=|..++..|...|.  +.+ .  .           .+  +.        ...+. ...+.+  ..+...+
T Consensus         1 m~ILvlgGTtE~r~la~~L~~~g~--v~~-s--v-----------~t--~~--------g~~~~~~~~~~~--~v~~G~l   52 (249)
T PF02571_consen    1 MKILVLGGTTEGRKLAERLAEAGY--VIV-S--V-----------AT--SY--------GGELLKPELPGL--EVRVGRL   52 (249)
T ss_pred             CEEEEEechHHHHHHHHHHHhcCC--EEE-E--E-----------Eh--hh--------hHhhhccccCCc--eEEECCC
Confidence            479999988889999999999997  221 1  0           00  11        11111 111223  3344555


Q ss_pred             -CcccHHhhc--ccCcEEEEcCCChhhHH--HHHHHHHHcCCcEEE
Q 019513          173 -RTSNALEIL--SQYEIVVDATDNAPSRY--MISDCCVVLGKPLVS  213 (340)
Q Consensus       173 -~~~~~~~~l--~~~DlVi~~tD~~~~r~--~i~~~~~~~~~p~i~  213 (340)
                       +.+...+++  .+.++|||+|..++...  -+.++|.+.|+|++-
T Consensus        53 g~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR   98 (249)
T PF02571_consen   53 GDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLR   98 (249)
T ss_pred             CCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEE
Confidence             555556666  47899999999988654  477899999999985

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK06172 short chain dehydrogenase; Provisional

Probab=91.93  E-value=0.69  Score=42.04  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=28.6

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r   39 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR   39 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            66889999996 5799999999999996 5777764

>PRK07109 short chain dehydrogenase; Provisional

Probab=91.92  E-value=0.8  Score=44.18  Aligned_cols=81  Identities=15%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+.                   .+.+.+.+.+++...  ++..+
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~-------------------~~l~~~~~~l~~~g~--~~~~v   62 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGE-------------------EGLEALAAEIRAAGG--EALAV   62 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHcCC--cEEEE
Confidence            467788999996 6799999999999996 577766321                   234445555554433  34444


Q ss_pred             cccCCccc-HH-------hhcccCcEEEEcCC
Q 019513          169 REALRTSN-AL-------EILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~~-------~~l~~~DlVi~~tD  192 (340)
                      ..++++.. ..       +.+...|++|.+..
T Consensus        63 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg   94 (334)
T PRK07109         63 VADVADAEAVQAAADRAEEELGPIDTWVNNAM   94 (334)
T ss_pred             EecCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            44444321 11       12346788887764

>PRK12831 putative oxidoreductase; Provisional

Probab=91.90  E-value=1.2  Score=45.24  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=41.0

Q ss_pred             CCCCHHHHhhhhhhccCC-CCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           64 YGLSPDMIYRYSRHLLLP-SFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~-~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++=..++||.-..... .|-......-..++|+|||+|..|..+|.+|++.|. +++|+|..
T Consensus       110 ~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~  172 (464)
T PRK12831        110 EPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL  172 (464)
T ss_pred             CCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            355556677775442110 011111122356889999999999999999999996 58888853

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.89  E-value=0.86  Score=41.63  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=28.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~   47 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH   47 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            478899999997 56999999999999974 556553

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=91.88  E-value=1.1  Score=43.09  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=26.4

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~   34 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK   34 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence            47999996 669999999999999766666663

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.84  E-value=0.37  Score=48.55  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .+++++|+|+|+|+.|-.+|.+|...|. .+++.|
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D   39 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGA-EVIAWD   39 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEC
Confidence            3667899999999999999999999996 577777

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=91.82  E-value=0.28  Score=48.95  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~  127 (340)
                      ++|+|||+|..|..+|..|.+.|- .+|+|||...
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~   35 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD   35 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence            379999999999999999999875 4899999765

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=91.78  E-value=1.4  Score=42.26  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=29.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+|++|..++..+...|+..+..+|.
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~  193 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            4679999999999999999999999887776653

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.75  E-value=0.89  Score=45.61  Aligned_cols=93  Identities=17%  Similarity=0.185  Sum_probs=55.4

Q ss_pred             cccC-CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           90 NLLK-SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        90 ~L~~-~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ++++ ++|+|+|.|+.|-..+..|...|- -.+++.|....                   .  ...+.|++   .+++. 
T Consensus         3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~-------------------~--~~~~~l~~---g~~~~-   57 (438)
T PRK04663          3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET-------------------P--PGQEQLPE---DVELH-   57 (438)
T ss_pred             cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC-------------------c--hhHHHhhc---CCEEE-
Confidence            4556 789999999999999999999864 46888774320                   0  01122322   33332 


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                       .....    .+.+.++|+||....-++.... -..+++.|+|+++
T Consensus        58 -~g~~~----~~~~~~~d~vV~SpgI~~~~p~-~~~a~~~gi~i~~   97 (438)
T PRK04663         58 -SGGWN----LEWLLEADLVVTNPGIALATPE-IQQVLAAGIPVVG   97 (438)
T ss_pred             -eCCCC----hHHhccCCEEEECCCCCCCCHH-HHHHHHCCCcEEE
Confidence             11111    2234678999877654443333 3345667777764

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.74  E-value=0.84  Score=40.81  Aligned_cols=35  Identities=40%  Similarity=0.501  Sum_probs=28.9

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +.+++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~   38 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN   38 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            45678999996 67999999999999976 7777654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=91.73  E-value=1.3  Score=40.09  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~   45 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT   45 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence            4678899999985 5599999999999997 77887754

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.71  E-value=1  Score=46.38  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .....+|+|+|+|.+|..++..+.+.|. .+.++|.+
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~  197 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTR  197 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4568999999999999999999999998 68888753

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.70  E-value=1  Score=41.32  Aligned_cols=35  Identities=14%  Similarity=0.114  Sum_probs=28.8

Q ss_pred             cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|+++.|+|.|++   |+|..+|+.|++.|.. +.+++.
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r   41 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQ   41 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecC
Confidence            3678899999985   8999999999999964 666553

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=91.68  E-value=1.1  Score=41.03  Aligned_cols=33  Identities=18%  Similarity=0.484  Sum_probs=27.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIV  123 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lv  123 (340)
                      .|++++|+|.|+ +|+|.++++.|+..|.. +.++
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~   38 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT   38 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence            477889999986 67999999999999975 5554

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.67  E-value=0.55  Score=44.92  Aligned_cols=77  Identities=18%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             cccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+||| .|-+|.++|.+|...|. .+++.+..+-                                        
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~----------------------------------------  193 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR----------------------------------------  193 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC----------------------------------------
Confidence            58999999999 77799999999999995 5666532110                                        


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                             +..+..+.+|+||.|+..+.   .+.....+.|.-+|+.+..
T Consensus       194 -------~l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin  232 (296)
T PRK14188        194 -------DLPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN  232 (296)
T ss_pred             -------CHHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence                   12445678999999998865   3444445566667776643

>PRK09072 short chain dehydrogenase; Provisional

Probab=91.66  E-value=1.3  Score=40.59  Aligned_cols=36  Identities=39%  Similarity=0.620  Sum_probs=29.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~   38 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN   38 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            356788999995 7799999999999996 58887743

>PRK08655 prephenate dehydrogenase; Provisional

Probab=91.66  E-value=0.46  Score=47.92  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=26.8

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+||| +|.+|..++..|...|. +++++|.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~   33 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD   33 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            699997 89999999999999995 67887754

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=91.65  E-value=0.88  Score=43.31  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +.+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   38 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR   38 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            45678999985 7799999999999994 6777764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=91.64  E-value=0.39  Score=48.97  Aligned_cols=88  Identities=18%  Similarity=0.320  Sum_probs=53.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|.|+|+|-+|..+|..|+..|.+ ++..+|.|.-....|+...+.    +..+-.+.+.....  ....       .+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~----~~e~gl~ell~~~~--~~~l-------~~   68 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLP----IYEPGLDEVVKQCR--GKNL-------FF   68 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCc----cCCCCHHHHHHHhh--cCCE-------EE
Confidence            3699999999999999999999865 477788776555555555432    21222222211110  1011       11


Q ss_pred             CcccHHhhcccCcEEEEcCCChh
Q 019513          173 RTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      + .+..+.++++|++|.|+.++.
T Consensus        69 t-~~~~~~i~~advi~I~V~TP~   90 (473)
T PLN02353         69 S-TDVEKHVAEADIVFVSVNTPT   90 (473)
T ss_pred             E-cCHHHHHhcCCEEEEEeCCCC
Confidence            2 223445788999999987654

>PRK12367 short chain dehydrogenase; Provisional

Probab=91.62  E-value=0.31  Score=44.92  Aligned_cols=40  Identities=28%  Similarity=0.287  Sum_probs=34.0

Q ss_pred             HHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           86 EGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -.|.++++++++|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus         7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~   47 (245)
T PRK12367          7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS   47 (245)
T ss_pred             hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4688999999999997 5799999999999996 57777654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=91.59  E-value=0.22  Score=48.03  Aligned_cols=86  Identities=21%  Similarity=0.201  Sum_probs=57.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||.|.+|..+|+.|...|. ++..+|...            .....                        
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~------------~~~~~------------------------  186 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG------------RPARP------------------------  186 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------------Ccccc------------------------
Confidence            46999999999999999999999998887 455555310            00000                        


Q ss_pred             cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~  215 (340)
                          ......++++.+|+|+.+.- +..++.+|+......   +.-+|+.+
T Consensus       187 ----~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a  233 (317)
T PRK06487        187 ----DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA  233 (317)
T ss_pred             ----cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence                00135677888998776654 567888888765443   33456644

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.49  E-value=1  Score=41.83  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=29.0

Q ss_pred             ccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++++.++|.|++   |+|.++|+.|+..|. ++.++|.
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r   40 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQ   40 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEec
Confidence            678899999986   799999999999996 4777664

>PRK07890 short chain dehydrogenase; Provisional

Probab=91.49  E-value=1.1  Score=40.56  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=28.8

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |.+++|+|.|+ |++|..+++.|+.-|. ++.++|.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r   37 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR   37 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence            56789999996 6799999999999997 6777763

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=91.48  E-value=1.5  Score=43.70  Aligned_cols=31  Identities=26%  Similarity=0.499  Sum_probs=26.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+|+|.|+.|-.+|+.|...|. +++..|..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~   31 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLK   31 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCC
Confidence            58999999999999999999997 57777743

>PRK00811 spermidine synthase; Provisional

Probab=91.46  E-value=0.82  Score=43.32  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=25.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +.++|+++|+|. |..+...|...++.++++||-|.
T Consensus        76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~  110 (283)
T PRK00811         76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE  110 (283)
T ss_pred             CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence            467899999985 44444445556899999998664

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=91.46  E-value=0.97  Score=43.71  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=51.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ...+|.|||+|..|..-++.|.. ..+.++.++|                   ....|++..++.+++...  ++...  
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g~--~v~~~--  183 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYEV--PVRAA--  183 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhCC--cEEEe--
Confidence            34789999999999987777654 3456777765                   334567777777775432  22221  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCC
Q 019513          171 ALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                          .+..+.++++|+|+.||.+
T Consensus       184 ----~~~~eav~~aDiVitaT~s  202 (325)
T TIGR02371       184 ----TDPREAVEGCDILVTTTPS  202 (325)
T ss_pred             ----CCHHHHhccCCEEEEecCC
Confidence                3456677899999999865

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=91.44  E-value=1.2  Score=44.38  Aligned_cols=88  Identities=13%  Similarity=0.075  Sum_probs=57.4

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .++.||+|+|.|.+|..+++.|...|. .+.++|.|.++.      .                     ...+..  .+..
T Consensus       238 ~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------~---------------------~~~g~~--vI~G  287 (393)
T PRK10537        238 HRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------R---------------------LPDDAD--LIPG  287 (393)
T ss_pred             ccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------h---------------------ccCCCc--EEEe
Confidence            446889999999999999999999886 688888763210      0                     001111  2222


Q ss_pred             cCCcccHH--hhcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513          171 ALRTSNAL--EILSQYEIVVDATDNAPSRYMISDCCVVLG  208 (340)
Q Consensus       171 ~~~~~~~~--~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~  208 (340)
                      +.+.++..  .-+++++.|+.++++......+-..+++.+
T Consensus       288 D~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~  327 (393)
T PRK10537        288 DSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS  327 (393)
T ss_pred             CCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence            33322211  134678999989988777766666677765

>PLN00016 RNA-binding protein; Provisional

Probab=91.41  E-value=0.88  Score=44.55  Aligned_cols=117  Identities=12%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             HHHHcccCCcEEEE----cC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513           86 EGQSNLLKSSILVI----GA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN  160 (340)
Q Consensus        86 ~~q~~L~~~~VlVv----G~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln  160 (340)
                      ........++|+|+    |+ |-+|+.+++.|...|. ++++++.+.-....+..           ...... ..+..  
T Consensus        45 ~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~-----------~~~~~~-~~l~~--  109 (378)
T PLN00016         45 AAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK-----------EPFSRF-SELSS--  109 (378)
T ss_pred             hhhcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc-----------Cchhhh-hHhhh--
Confidence            33455666889999    86 6699999999999994 67777754311000000           000000 11111  


Q ss_pred             CCceEEEecccCCcccHHhhc--ccCcEEEEcCCC-hhhHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          161 STVHIIEHREALRTSNALEIL--SQYEIVVDATDN-APSRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       161 p~v~i~~~~~~~~~~~~~~~l--~~~DlVi~~tD~-~~~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +.+++  +..++..  ..+.+  .++|+||++... ...-..+-++|.+.++ .+|..++.+.+|
T Consensus       110 ~~v~~--v~~D~~d--~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg  170 (378)
T PLN00016        110 AGVKT--VWGDPAD--VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK  170 (378)
T ss_pred             cCceE--EEecHHH--HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence            12332  2222221  22333  468999988643 2223345667888887 588776655544

>PRK05086 malate dehydrogenase; Provisional

Probab=91.40  E-value=0.65  Score=44.68  Aligned_cols=33  Identities=30%  Similarity=0.514  Sum_probs=26.8

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHH-cCC-CcEEEEeCC
Q 019513           94 SSILVIGA-GGLGSPALLYLAA-CGV-GRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~-aGv-g~i~lvD~D  126 (340)
                      .||+|||+ |++|+.++..|.. .+. ..+.++|.+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~   36 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA   36 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence            47999999 9999999999865 455 468998853

>PRK06940 short chain dehydrogenase; Provisional

Probab=91.40  E-value=0.95  Score=42.16  Aligned_cols=31  Identities=32%  Similarity=0.588  Sum_probs=25.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++.++|.|+||+|..+++.|+ .| .++.++|.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r   32 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADY   32 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeC
Confidence            457888899999999999996 78 46777764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=91.40  E-value=0.26  Score=47.75  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      .|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999996 6999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=91.37  E-value=2  Score=43.52  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=34.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|-|.|-+|..+|+.|...|..-+++-|.+
T Consensus       234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            5889999999999999999999999998888788866

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=91.29  E-value=0.25  Score=46.74  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=27.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..|+|||+|..|+.+|..|++.|+. ++|+|.+.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~   34 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP   34 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence            3699999999999999999999976 88888654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05876 short chain dehydrogenase; Provisional

Probab=91.29  E-value=1.4  Score=41.16  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=28.2

Q ss_pred             ccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +++++|+|.| .||+|..+++.|+..|. ++.++|.
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r   38 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDV   38 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            6778899998 56799999999999997 4777664

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=91.24  E-value=1.1  Score=45.31  Aligned_cols=105  Identities=13%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             cEEEEcCChh-HHHHHHHHHH----cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           95 SILVIGAGGL-GSPALLYLAA----CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        95 ~VlVvG~Ggl-Gs~va~~La~----aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      ||+|||+|+. +-.+...|+.    .++++|.|+|-|.   ..|.+            =...+++..++.++.++|+...
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~Tt   66 (437)
T cd05298           2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYTT   66 (437)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEEC
Confidence            7999999996 4456666663    4578999999664   11111            1223445556666677776543


Q ss_pred             ccCCcccHHhhcccCcEEEEcC--CChhhHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513          170 EALRTSNALEILSQYEIVVDAT--DNAPSRYMISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~t--D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                            +..+.++++|+||.+.  +..+.|..-.++..++|+  +...+.|..|.
T Consensus        67 ------dr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~  113 (437)
T cd05298          67 ------DPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGF  113 (437)
T ss_pred             ------CHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHH
Confidence                  3467789999999775  334566666788899996  44455555553

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=91.18  E-value=0.68  Score=46.46  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             cEEEEcCChhHH-HHHHHHHH----cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           95 SILVIGAGGLGS-PALLYLAA----CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        95 ~VlVvG~GglGs-~va~~La~----aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      ||.|||+|+.-+ .+...|+.    .++++|.|+|-|.  +..|..            =...+.+.+++.++..+|....
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~   67 (419)
T cd05296           2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT   67 (419)
T ss_pred             EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence            799999999744 56666665    5679999999773  211111            1234556666777777765543


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC--hhhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513          170 EALRTSNALEILSQYEIVVDATDN--APSRYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~--~~~r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                            +..+.+.+.|+||.+.--  .+.|..-.+...++|+-  -..+.|..|
T Consensus        68 ------d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG  113 (419)
T cd05296          68 ------DRREALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGG  113 (419)
T ss_pred             ------CHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcch
Confidence                  346678899999987643  33455555566667653  244555555

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.18  E-value=1.3  Score=44.73  Aligned_cols=90  Identities=18%  Similarity=0.156  Sum_probs=54.2

Q ss_pred             ccCCcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~-va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .++++|+|+|+|+.|.. +|+.|...|.. +++.|.+..                   +  .. +.|.+.  .+.+..  
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~~~~-------------------~--~~-~~l~~~--gi~~~~--   57 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDLKES-------------------A--VT-QRLLEL--GAIIFI--   57 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECCCCC-------------------h--HH-HHHHHC--CCEEeC--
Confidence            35578999999999999 79999999965 777764321                   0  11 124443  333321  


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      .. .    .+.+.++|+||....-++....+ ..+++.++|+++
T Consensus        58 ~~-~----~~~~~~~d~vv~spgi~~~~~~~-~~a~~~~i~i~~   95 (461)
T PRK00421         58 GH-D----AENIKDADVVVYSSAIPDDNPEL-VAARELGIPVVR   95 (461)
T ss_pred             CC-C----HHHCCCCCEEEECCCCCCCCHHH-HHHHHCCCcEEe
Confidence            11 1    23356799999776544433322 344566666664

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=91.16  E-value=0.95  Score=45.73  Aligned_cols=77  Identities=14%  Similarity=0.107  Sum_probs=50.3

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHc-------CC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAAC-------GV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-ST  162 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~a-------Gv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~  162 (340)
                      -.+|.|||+ |.+|+.+|..|+..       |+ .+|.++|                   +-+.|++.-+.-|..-. |.
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD-------------------~~~~~a~G~amDL~daa~~~  160 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE-------------------RSKQALEGVAMELEDSLYPL  160 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc-------------------CCcchhHHHHHHHHHhhhhh
Confidence            368999999 99999999999988       44 2466654                   33345555555555543 32


Q ss_pred             c-eEEEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          163 V-HIIEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       163 v-~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      . +|....      +..+.++++|+||.+...+
T Consensus       161 ~~~v~i~~------~~ye~~kdaDiVVitAG~p  187 (444)
T PLN00112        161 LREVSIGI------DPYEVFQDAEWALLIGAKP  187 (444)
T ss_pred             cCceEEec------CCHHHhCcCCEEEECCCCC
Confidence            2 221111      2245678999999887763

>PLN02712 arogenate dehydrogenase

Probab=91.12  E-value=1.1  Score=47.81  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=30.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .++..+|.|||+|.+|..+|+.|...|. +|.++|.+
T Consensus       366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~  401 (667)
T PLN02712        366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRS  401 (667)
T ss_pred             CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECC
Confidence            4577899999999999999999999984 57777753

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=91.11  E-value=0.3  Score=49.11  Aligned_cols=32  Identities=38%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..+|+|||+|-+|+++|..|++.|+. ++|+|.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~   33 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM   33 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence            35799999999999999999999965 888884

>PRK07806 short chain dehydrogenase; Provisional

Probab=91.09  E-value=1.4  Score=39.76  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=27.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      ++++++|+|.|+ |++|..+++.|+..|. ++.+++
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~   37 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY   37 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence            366789999997 7899999999999996 455554

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.07  E-value=1.5  Score=47.19  Aligned_cols=62  Identities=18%  Similarity=0.148  Sum_probs=41.7

Q ss_pred             CCCCHHHHhhhhhhccCCC--CCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           64 YGLSPDMIYRYSRHLLLPS--FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l~~--~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+-..++||-=......  +.......-..++|+|||+|..|..+|.+|++.|. +++|+|..
T Consensus       400 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~  463 (752)
T PRK12778        400 EAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL  463 (752)
T ss_pred             CCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            4577777777653221100  00111123357799999999999999999999996 59999864

>PRK08264 short chain dehydrogenase; Validated

Probab=91.06  E-value=0.37  Score=43.37  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=32.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++++++|+|.|+ |++|..+++.|+..|..++.+++.+.
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            467889999995 77999999999999987888887543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.05  E-value=1  Score=42.69  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=26.8

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+|+|+|+|.+|..+++.|.+.|... .+++.|
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v-~i~g~d   35 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVV-RIIGRD   35 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeE-EEEeec
Confidence            468999999999999999999999653 344443

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=91.02  E-value=0.9  Score=50.43  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=30.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..++|+|||+|..|-.+|.+|++.|. +++|+|...
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            35789999999999999999999996 699998653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.01  E-value=0.72  Score=46.15  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +.+++|+|+|.|+.|-.++..|...|. +++..|.+
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~   38 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR   38 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            457889999999999999999999996 68888854

>PRK06349 homoserine dehydrogenase; Provisional

Probab=91.00  E-value=1.2  Score=44.75  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=18.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHH
Q 019513           93 KSSILVIGAGGLGSPALLYLAA  114 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~  114 (340)
                      .-+|.|+|+|.+|..+++.|..
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~   24 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEE   24 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHH
Confidence            3579999999999999988854

>PRK12744 short chain dehydrogenase; Provisional

Probab=90.96  E-value=1.4  Score=40.26  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=26.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGI  122 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~l  122 (340)
                      .|++++|+|.|+ |++|..+++.|+..|...+.+
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i   38 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI   38 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence            467789999985 569999999999999764433

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.92  E-value=1.1  Score=40.50  Aligned_cols=30  Identities=30%  Similarity=0.364  Sum_probs=24.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcE
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRL  120 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i  120 (340)
                      +.+++|+|.|+ |++|..+++.|+..|...+
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~   32 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA   32 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence            45678999986 5699999999999996533

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=90.82  E-value=1.8  Score=38.42  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             EEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC-
Q 019513           96 ILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR-  173 (340)
Q Consensus        96 VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~-  173 (340)
                      |+|+|+.| +|+++++.|...|..-+.+.....                    .........       .+..+..++. 
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~--------------------~~~~~~~~~-------~~~~~~~dl~~   53 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSN--------------------SESFEEKKL-------NVEFVIGDLTD   53 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCST--------------------GGHHHHHHT-------TEEEEESETTS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccc--------------------ccccccccc-------eEEEEEeeccc
Confidence            78999655 999999999999976443221110                    000000000       2333333444 


Q ss_pred             cccHHhhcccC--cEEEEcCCChh--------h---------HHHHHHHHHHcCC-cEEEEeecCceeE
Q 019513          174 TSNALEILSQY--EIVVDATDNAP--------S---------RYMISDCCVVLGK-PLVSGAALGLEGQ  222 (340)
Q Consensus       174 ~~~~~~~l~~~--DlVi~~tD~~~--------~---------r~~i~~~~~~~~~-p~i~~~~~g~~G~  222 (340)
                      .+...++++..  |.|+.+.....        .         -..+-+.|.+.++ .+|..++.+.+|.
T Consensus        54 ~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~  122 (236)
T PF01370_consen   54 KEQLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGD  122 (236)
T ss_dssp             HHHHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTS
T ss_pred             cccccccccccCceEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34555666655  88888866531        0         0124466777776 7888777655553

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.81  E-value=0.7  Score=43.96  Aligned_cols=77  Identities=22%  Similarity=0.309  Sum_probs=56.8

Q ss_pred             cccCCcEEEEcCChh-HHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGGL-GSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~Ggl-Gs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|||.|.+ |.+++..|...|. ++++.+.                                           
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs-------------------------------------------  190 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHS-------------------------------------------  190 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecC-------------------------------------------
Confidence            579999999999997 9999999998884 4555311                                           


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                          ...+..+.++.+|+||.++..+.   ++.....+.|.-+|+.+..
T Consensus       191 ----~t~~l~~~~~~ADIVV~avG~~~---~i~~~~ik~gavVIDVGin  232 (285)
T PRK14189        191 ----KTRDLAAHTRQADIVVAAVGKRN---VLTADMVKPGATVIDVGMN  232 (285)
T ss_pred             ----CCCCHHHHhhhCCEEEEcCCCcC---ccCHHHcCCCCEEEEcccc
Confidence                01234567788999999988644   4555666677778887754

>PLN00198 anthocyanidin reductase; Provisional

Probab=90.80  E-value=3.6  Score=39.33  Aligned_cols=35  Identities=29%  Similarity=0.244  Sum_probs=27.1

Q ss_pred             ccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++.++|+|.| +|.+|+.+++.|...|. ++.+++.|
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~   42 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD   42 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3467899999 55699999999999996 56555443

>PRK05855 short chain dehydrogenase; Validated

Probab=90.80  E-value=1.1  Score=45.87  Aligned_cols=84  Identities=19%  Similarity=0.225  Sum_probs=52.7

Q ss_pred             HHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           87 GQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      .+..+++.+++|+|+ ||+|..+++.|+..|.. +.+++.+                   ..+.+.+++.+++...  ++
T Consensus       309 ~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~-------------------~~~~~~~~~~~~~~~~--~~  366 (582)
T PRK05855        309 PRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDID-------------------EAAAERTAELIRAAGA--VA  366 (582)
T ss_pred             ccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCC--eE
Confidence            345678899999986 78999999999999975 7776632                   1344455555554433  34


Q ss_pred             EEecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          166 IEHREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+..++++. ...++       +...|+||.+..
T Consensus       367 ~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag  401 (582)
T PRK05855        367 HAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAG  401 (582)
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEECCc
Confidence            4444555532 22222       234688877764

>PRK06720 hypothetical protein; Provisional

Probab=90.79  E-value=1.7  Score=37.81  Aligned_cols=36  Identities=33%  Similarity=0.551  Sum_probs=29.7

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+++.++|.|++ |+|..++..|+..| .++.++|.+
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~   49 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID   49 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence            4678899999976 59999999999999 467777744

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=90.76  E-value=1.9  Score=41.40  Aligned_cols=31  Identities=23%  Similarity=0.189  Sum_probs=25.4

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++|+|.|+ |.+|+.+++.|...|. ++.++|.
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r   32 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR   32 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence            47899986 6699999999999996 5666664

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK12937 short chain dehydrogenase; Provisional

Probab=90.74  E-value=1.2  Score=39.97  Aligned_cols=32  Identities=31%  Similarity=0.439  Sum_probs=26.4

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIV  123 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lv  123 (340)
                      +++++|+|.|+ |++|..+++.|+..|.. +.++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~   35 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN   35 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence            56789999985 77999999999999974 4443

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=90.68  E-value=1.9  Score=44.01  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+.+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~  176 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED  176 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            34799999999999999999999996 589988543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.67  E-value=0.95  Score=43.59  Aligned_cols=98  Identities=22%  Similarity=0.304  Sum_probs=60.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH--hhCCCceEEEec
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR--SINSTVHIIEHR  169 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~--~lnp~v~i~~~~  169 (340)
                      ..++|+|.|+|++|..+++---.+|.++|.=||                   +...|-+.+++.=.  =+||. ...-  
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvD-------------------iN~~Kf~~ak~fGaTe~iNp~-d~~~--  249 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVD-------------------INPDKFEKAKEFGATEFINPK-DLKK--  249 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEe-------------------cCHHHHHHHHhcCcceecChh-hccc--
Confidence            458999999999999999999999999999987                   33334444432210  12332 1000  


Q ss_pred             ccCCcccHHhhc-ccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEE
Q 019513          170 EALRTSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVL-GKPLVS  213 (340)
Q Consensus       170 ~~~~~~~~~~~l-~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~  213 (340)
                       .+. +-+.+.- .++|+-++|+.++.+-..--..|+.- |+-++-
T Consensus       250 -~i~-evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i  293 (375)
T KOG0022|consen  250 -PIQ-EVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI  293 (375)
T ss_pred             -cHH-HHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence             000 0011111 47999999999988766555555553 554443

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=90.65  E-value=1.4  Score=40.03  Aligned_cols=34  Identities=32%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .|.+++++|.|+ |++|..+++.|+..|. ++.++|
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~   40 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIIND   40 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence            367788999986 5699999999999996 566655

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=90.60  E-value=1.1  Score=43.70  Aligned_cols=95  Identities=15%  Similarity=0.148  Sum_probs=52.2

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcE-EEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRL-GIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i-~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+|+|+|+ |.+|.+++..|....--++ .+.|..                ..|+        .+.+..+..... ....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~--------~l~~~~~~~~~~-~~~~   57 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGK--------PLSDVHPHLRGL-VDLV   57 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCc--------chHHhCcccccc-cCce
Confidence            58999998 6789999999987643344 333311                1111        111111211100 0001


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      +.+.... .+.+.|+|+.|+.+.....++ ..+.+.|+++|+.+
T Consensus        58 ~~~~~~~-~~~~vD~Vf~alP~~~~~~~v-~~a~~aG~~VID~S   99 (343)
T PRK00436         58 LEPLDPE-ILAGADVVFLALPHGVSMDLA-PQLLEAGVKVIDLS   99 (343)
T ss_pred             eecCCHH-HhcCCCEEEECCCcHHHHHHH-HHHHhCCCEEEECC
Confidence            1111111 346799999999886554444 44566899999854

>PRK06199 ornithine cyclodeaminase; Validated

Probab=90.55  E-value=1.5  Score=43.43  Aligned_cols=76  Identities=17%  Similarity=0.247  Sum_probs=57.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc-eEEEec
Q 019513           93 KSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV-HIIEHR  169 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v-~i~~~~  169 (340)
                      .++++|+|+|.-+..-+..++..  .+.++.++|.+                   ..|++..++++.+..+.+ ++... 
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~~~~v~~~-  214 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQITNVEVV-  214 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCCCceEEEe-
Confidence            47899999999999999988763  58899987643                   357888888888766544 34442 


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                           ++..+.+.++|+|+.||-+
T Consensus       215 -----~s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        215 -----DSIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             -----CCHHHHHcCCCEEEEccCC
Confidence                 3456778999999998865

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.48  E-value=2.5  Score=41.16  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=29.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~  218 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDI  218 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3678999999999999998888899877877763

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=90.48  E-value=2.4  Score=41.13  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             cCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .+++|+|-|++| +|+++++.|...|-.-.+.|.                  +-+..|-......|....+.  ...+..
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR------------------~~~~~k~~~~L~~l~~a~~~--l~l~~a   64 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVR------------------DPEDEKKTEHLRKLEGAKER--LKLFKA   64 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEc------------------CcchhhhHHHHHhcccCccc--ceEEec
Confidence            568899999988 999999999999976555443                  22222322222233322222  445555


Q ss_pred             cCCc-ccHHhhcccCcEEEEcCCChhh-------HH---------HHHHHHHHcC--CcEEEEeec
Q 019513          171 ALRT-SNALEILSQYEIVVDATDNAPS-------RY---------MISDCCVVLG--KPLVSGAAL  217 (340)
Q Consensus       171 ~~~~-~~~~~~l~~~DlVi~~tD~~~~-------r~---------~i~~~~~~~~--~p~i~~~~~  217 (340)
                      ++.. +...+.++++|.|+.+...+..       +.         -+-++|.+.+  +++|..+..
T Consensus        65 DL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~  130 (327)
T KOG1502|consen   65 DLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSST  130 (327)
T ss_pred             cccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccH
Confidence            6554 4456678999999977654221       11         1447788887  778875543

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=90.46  E-value=0.35  Score=47.18  Aligned_cols=34  Identities=32%  Similarity=0.502  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ...|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~   40 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP   40 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence            4579999999999999999999997 599999764

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=90.44  E-value=0.95  Score=41.60  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAAC--GVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D  126 (340)
                      +|.|||||++|..+++.+-.-  .+..+.+.|.+
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~   35 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD   35 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC
Confidence            689999999999988866432  24445555543

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.43  E-value=1.2  Score=40.83  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             cccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++++++++|.|+   +|+|.++++.|++.|. ++.+.|.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r   41 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGF   41 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecC
Confidence            367889999996   6999999999999996 5777764

>PRK07074 short chain dehydrogenase; Provisional

Probab=90.43  E-value=1.3  Score=40.28  Aligned_cols=32  Identities=38%  Similarity=0.513  Sum_probs=26.8

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r   34 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI   34 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            467999997 6799999999999995 5777764

>PRK08303 short chain dehydrogenase; Provisional

Probab=90.42  E-value=2.3  Score=40.44  Aligned_cols=36  Identities=28%  Similarity=0.334  Sum_probs=30.0

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|+++.|+|.|++ |+|.++++.|+..|. ++.+++.+
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            3678899999974 799999999999996 57777654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.38  E-value=0.37  Score=46.04  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=29.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            369999999999999999999996 689998653

>PLN02827 Alcohol dehydrogenase-like

Probab=90.33  E-value=1.7  Score=42.67  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=29.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+|++|..++..+...|+..+..+|.
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~  226 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI  226 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            4689999999999999999888999877777763

>PRK06184 hypothetical protein; Provisional

Probab=90.33  E-value=0.36  Score=49.18  Aligned_cols=34  Identities=26%  Similarity=0.520  Sum_probs=30.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ....|+|||+|..|..+|..|++.|+. ++|+|..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~   35 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA   35 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            356799999999999999999999995 8888854

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=90.32  E-value=1.4  Score=40.20  Aligned_cols=34  Identities=24%  Similarity=0.450  Sum_probs=27.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      +|.+++|+|.|+ |++|..+++.|+..|.. +.++|
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~   42 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD   42 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence            467899999985 56999999999999964 55555

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.31  E-value=1.6  Score=39.95  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             HcccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEe
Q 019513           89 SNLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        89 ~~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD  124 (340)
                      .+|++++|+|.|++   |+|..+|+.|+..|. ++.+.+
T Consensus         2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~   39 (256)
T PRK12859          2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY   39 (256)
T ss_pred             CCcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence            36889999999995   799999999999997 466554

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=90.30  E-value=2.1  Score=41.04  Aligned_cols=30  Identities=30%  Similarity=0.333  Sum_probs=24.6

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      +|+|.|+ |.+|+.+++.|...|...+..+|
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~   32 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD   32 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence            6899986 77999999999999876555555

>PRK14030 glutamate dehydrogenase; Provisional

Probab=90.30  E-value=2.5  Score=42.75  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=32.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++|+|-|.|-+|+.+|+.|...|..-+.+-|.
T Consensus       225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~  260 (445)
T PRK14030        225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGP  260 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            488999999999999999999999999887776553

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=90.28  E-value=1.4  Score=42.77  Aligned_cols=90  Identities=17%  Similarity=0.211  Sum_probs=53.5

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcCCCc--EEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           94 SSILVIGAGG-LGSPALLYLAACGVGR--LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aGvg~--i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .+|+|+|+.| +|.++++.|...|...  +..+-               +..+.|+.=.         ++ ..++...  
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~---------------s~~~~g~~l~---------~~-g~~i~v~--   54 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLA---------------SARSAGKELS---------FK-GKELKVE--   54 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEE---------------ccccCCCeee---------eC-CceeEEe--
Confidence            4799999766 8999999999876543  33321               1122332210         11 1222221  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .+..    ..++++|+||.|+.+..++.+..++ .+.|..+|+.+
T Consensus        55 d~~~----~~~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS   94 (334)
T PRK14874         55 DLTT----FDFSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS   94 (334)
T ss_pred             eCCH----HHHcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence            1111    1246899999999988777766654 45677888644

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=90.27  E-value=0.36  Score=51.15  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            589999999999999999999997 599999874

>TIGR01746 Thioester-redct thioester reductase domain

Probab=90.25  E-value=2.7  Score=39.93  Aligned_cols=30  Identities=27%  Similarity=0.277  Sum_probs=24.0

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEe
Q 019513           95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVD  124 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD  124 (340)
                      +|+|.|+ |.+|+.+++.|...|- .++..+.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~   32 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV   32 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence            5899997 7799999999999984 3566654

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=90.25  E-value=0.72  Score=42.09  Aligned_cols=37  Identities=30%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++.+++|+|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus         3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~   40 (257)
T PRK07067          3 RLQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP   40 (257)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence            366789999996 7799999999999996 577776543

>PRK06128 oxidoreductase; Provisional

Probab=90.20  E-value=1.5  Score=41.24  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=28.6

Q ss_pred             HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 019513           88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIV  123 (340)
Q Consensus        88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lv  123 (340)
                      ..+|++++|+|.|+ |++|..+++.|++.|.. +.++
T Consensus        50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~   85 (300)
T PRK06128         50 FGRLQGRKALITGADSGIGRATAIAFAREGAD-IALN   85 (300)
T ss_pred             ccccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEE
Confidence            34688899999986 67999999999999974 5544

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=90.20  E-value=0.38  Score=47.35  Aligned_cols=32  Identities=28%  Similarity=0.630  Sum_probs=29.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            69999999999999999999995 699999874

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=90.16  E-value=1.4  Score=46.83  Aligned_cols=34  Identities=32%  Similarity=0.491  Sum_probs=28.6

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r  446 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL  446 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            56788999986 6799999999999996 6777764

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.15  E-value=0.41  Score=51.28  Aligned_cols=33  Identities=27%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|||+|..|+.||..++.+|. .++|+|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence            579999999999999999999996 699999653

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=90.12  E-value=0.35  Score=47.63  Aligned_cols=33  Identities=30%  Similarity=0.544  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            579999999999999999999997 589998764

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=90.11  E-value=0.36  Score=47.27  Aligned_cols=34  Identities=24%  Similarity=0.535  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ...|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence            35799999999999999999999986 99999754

>PRK15076 alpha-galactosidase; Provisional

Probab=90.10  E-value=0.8  Score=46.12  Aligned_cols=106  Identities=19%  Similarity=0.204  Sum_probs=59.0

Q ss_pred             CcEEEEcCChhHHHHHH--HHH-HcCC--CcEEEEeCCcccccCCccccccCCCccCccc-HHH-HHHHHHhhCCCceEE
Q 019513           94 SSILVIGAGGLGSPALL--YLA-ACGV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSK-VKS-AAATCRSINSTVHII  166 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~--~La-~aGv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~K-a~~-a~~~L~~lnp~v~i~  166 (340)
                      .+|.|||+|++|...+.  .++ ..+.  .+|.|+|-|.                 .+.+ +.. +.+.+....+..+|.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~-----------------er~~~~~~l~~~~~~~~~~~~~i~   64 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP-----------------ERLEESEIVARKLAESLGASAKIT   64 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH-----------------HHHHHHHHHHHHHHHhcCCCeEEE
Confidence            47999999999876655  554 2223  3899998543                 0111 112 333344444445554


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCCh--hhHH-HHHHHHHHcCCcEEEEeecCceeE
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDNA--PSRY-MISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~--~~r~-~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                      ..      .+..+.++++|+||.+....  ..+. .=.+...++|+----+.+.|..|.
T Consensus        65 ~t------tD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~  117 (431)
T PRK15076         65 AT------TDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGI  117 (431)
T ss_pred             EE------CCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccch
Confidence            32      22345678999999887764  2222 233566777764111244444443

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=90.07  E-value=1.6  Score=41.03  Aligned_cols=31  Identities=32%  Similarity=0.444  Sum_probs=26.4

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        96 VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |+|.|+ |-+|+++++.|...|...+.++|..
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence            788885 6699999999999998778888753

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=90.03  E-value=0.91  Score=43.22  Aligned_cols=125  Identities=20%  Similarity=0.215  Sum_probs=68.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC-
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL-  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~-  172 (340)
                      .+|.+||+|..|.++|.+|..+| -.++++|.+.--...+-+       ..|-.-+...++...+.  ++-|....... 
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r~~~ka~~~~~-------~~Ga~~a~s~~eaa~~a--DvVitmv~~~~~   70 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNRTPEKAAELLA-------AAGATVAASPAEAAAEA--DVVITMLPDDAA   70 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeCChhhhhHHHH-------HcCCcccCCHHHHHHhC--CEEEEecCCHHH
Confidence            47999999999999999999999 457777654311000000       11221122222222221  22222211110 


Q ss_pred             ------CcccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEeC
Q 019513          173 ------RTSNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYNY  228 (340)
Q Consensus       173 ------~~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~~  228 (340)
                            -++...+-+++=.+|||++-. +..-..+.+.....|..++++-+.|.     .|.+++..-
T Consensus        71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvG  138 (286)
T COG2084          71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVG  138 (286)
T ss_pred             HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeC
Confidence                  011122223445677777654 55566788888999999988655543     467766543

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=90.00  E-value=1.3  Score=42.02  Aligned_cols=123  Identities=19%  Similarity=0.185  Sum_probs=65.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .+|.|||+|-+|..++..|++.|. +++++|.+.-....+..        .|...+....+.++.  .++-+...+....
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~--------~g~~~~~s~~~~~~~--aDvVi~~vp~~~~   70 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVD--------KGATPAASPAQAAAG--AEFVITMLPNGDL   70 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH--------cCCcccCCHHHHHhc--CCEEEEecCCHHH
Confidence            379999999999999999999995 68888865322111111        122222222222221  1333333222110


Q ss_pred             -c------ccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEe
Q 019513          174 -T------SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN  227 (340)
Q Consensus       174 -~------~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~  227 (340)
                       .      ......+..-.+||+++-. +..-..+.+.....++.++++-..|.     .|.+.++.
T Consensus        71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~  137 (296)
T PRK15461         71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLA  137 (296)
T ss_pred             HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEE
Confidence             0      0111123333466666544 44455566777778888887655443     35555543

>PRK05717 oxidoreductase; Validated

Probab=89.99  E-value=1.5  Score=40.05  Aligned_cols=36  Identities=31%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~   43 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD   43 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence            356788999996 6799999999999995 67877643

>PRK06185 hypothetical protein; Provisional

Probab=89.99  E-value=0.43  Score=46.88  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+..|+|||+|.+|..+|..|++.|+ +++|+|.+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            35679999999999999999999997 589999753

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=89.97  E-value=0.94  Score=46.00  Aligned_cols=100  Identities=17%  Similarity=0.128  Sum_probs=58.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCC-CccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE-PYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~-~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .....+|+|||+|+-|-.+|..|+++|+. +++++...-   .-.+-.+... -.+.+.=++...+.|.+.+  +++..-
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~-Vtv~e~~~~---~GGll~yGIP~~kl~k~i~d~~i~~l~~~G--v~~~~~  193 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHD-VTVFERVAL---DGGLLLYGIPDFKLPKDILDRRLELLERSG--VEFKLN  193 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCe-EEEeCCcCC---CceeEEecCchhhccchHHHHHHHHHHHcC--eEEEEc
Confidence            34558999999999999999999999965 666553211   1111111100 0112222334445555555  555432


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      ...=.+-...++++.||.|+.|+....
T Consensus       194 ~~vG~~it~~~L~~e~Dav~l~~G~~~  220 (457)
T COG0493         194 VRVGRDITLEELLKEYDAVFLATGAGK  220 (457)
T ss_pred             ceECCcCCHHHHHHhhCEEEEeccccC
Confidence            221113445677788999999987654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=89.93  E-value=1.7  Score=34.11  Aligned_cols=78  Identities=14%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++.+|+-+|||. |......+....-.+++-||.+.                   .-.+.+.+.+.+....-++..+...
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d   60 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGD   60 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESC
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECc
Confidence            468999999985 44433333333445688888643                   2245566666454445555555555


Q ss_pred             CCcccHHhhcccCcEEEEcC
Q 019513          172 LRTSNALEILSQYEIVVDAT  191 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~t  191 (340)
                      +  ....+...+||+|+...
T Consensus        61 ~--~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen   61 A--EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             C--HGGTTTSSCEEEEEECS
T ss_pred             c--ccCcccCCCCCEEEECC
Confidence            5  22244556799999765

...

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=89.92  E-value=0.47  Score=45.88  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      .|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~   35 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA   35 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            59999999999999999999995 69999988763

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=89.92  E-value=2.5  Score=41.03  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=29.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~  219 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDI  219 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            3678999999999999999999999877887764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR02028 ChlP geranylgeranyl reductase

Probab=89.90  E-value=0.39  Score=47.55  Aligned_cols=31  Identities=26%  Similarity=0.456  Sum_probs=28.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+|||+|..|+.+|..|++.|+. +.|+|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence            699999999999999999999975 8888854

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07454 short chain dehydrogenase; Provisional

Probab=89.87  E-value=1.9  Score=38.73  Aligned_cols=32  Identities=31%  Similarity=0.529  Sum_probs=26.9

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r   38 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR   38 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            467899986 7799999999999997 6777764

>PRK08628 short chain dehydrogenase; Provisional

Probab=89.83  E-value=1.7  Score=39.53  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=28.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r   39 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR   39 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence            477889999995 56999999999999975 555543

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=89.83  E-value=2.6  Score=38.06  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=27.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHH--HcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLA--ACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La--~aGvg~i~lvD~D  126 (340)
                      ..+|+|+|+|.+|..++.++.  ..|+.-+.++|.|
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            458999999999999998743  4677777888865

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=89.82  E-value=2.6  Score=39.67  Aligned_cols=90  Identities=21%  Similarity=0.216  Sum_probs=58.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .+|.+||+|..|..++.-|...|.   .+|.+.|.+                      .+... .+.+.++.. +     
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~----------------------~e~~~-~l~~~~g~~-~-----   52 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS----------------------EEKRA-ALAAEYGVV-T-----   52 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC----------------------HHHHH-HHHHHcCCc-c-----
Confidence            479999999999999999999994   466665432                      12222 344443322 1     


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHH-HHcCCcEEEEe
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCC-VVLGKPLVSGA  215 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~-~~~~~p~i~~~  215 (340)
                         ..+..+.....|+||.|.-.......++++- ...++.+||..
T Consensus        53 ---~~~~~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISia   95 (266)
T COG0345          53 ---TTDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIA   95 (266)
T ss_pred             ---cCcHHHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEe
Confidence               2334566778999999988755555555554 23456677743

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=89.80  E-value=0.45  Score=46.31  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      ..|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            469999999999999999999997 6999996654

>PRK07236 hypothetical protein; Provisional

Probab=89.80  E-value=0.47  Score=46.45  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=31.3

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +...+|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            4567899999999999999999999985 88888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		7e-47
1zud_1	251	Structure Of This-Thif Protein Complex Length = 251		5e-37
1zfn_A	253	Structural Analysis Of Escherichia Coli Thif Length		5e-37
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		2e-15
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		2e-15
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		3e-15
3h5a_A	358	Crystal Structure Of E. Coli Mccb Length = 358		1e-10
3h5n_B	353	Crystal Structure Of E. Coli Mccb + Atp Length = 35		1e-10
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		3e-10
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		4e-10
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		8e-10
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		9e-10
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		1e-09
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-09
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-09
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-09
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		2e-09
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-09
3guc_A	292	Human Ubiquitin-Activating Enzyme 5 In Complex With		3e-07
4gsk_A	615	Crystal Structure Of An Atg7-Atg10 Crosslinked Comp		4e-06
4gsl_A	615	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		4e-06
3t7e_A	344	Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E		5e-06
3vh3_A	340	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		5e-06
3vh2_A	616	Crystal Structure Of Saccharomyces Cerevisiae Atg7		5e-06
3vh1_A	598	Crystal Structure Of Saccharomyces Cerevisiae Atg7		5e-06
3rui_A	340	Crystal Structure Of Atg7c-Atg8 Complex Length = 34		5e-06
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		1e-04

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score =  184 bits (466), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 154/252 (61%), Gaps = 10/252 (3%)
Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           LS   + RY+R ++L  F  +GQ  L  S +L++G GGLG  A  YLA+ GVG L ++D 
Sbjct: 4   LSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 63
Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D V L+N+ RQ +H++  +GQ KV+SA      IN  + I      L  +    ++++++
Sbjct: 64  DTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHD 123
Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRC---LFPTP 241
           +V+D TDN   R  ++  C     PLVSGAA+ +EGQ+TV+ Y +G PCYRC   LF   
Sbjct: 124 LVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGEN 183
Query: 242 PPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301
             T     C ++GV+  + G+IG LQA+EAIK+ +  G+P SG+++++DA++ + R +K+
Sbjct: 184 ALT-----CVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKL 238
Query: 302 RGRSSQCEACGE 313
             R+  CE CG+
Sbjct: 239 M-RNPGCEVCGQ 249

>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251

Iteration: 1
 Score =  151 bits (382), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 7/244 (2%)
Query: 71  IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
             RYSR +LL    ++GQ  LL S +L+IG GGLG+PA LYLA  GVG L + D D V L
Sbjct: 6   FMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL 65
Query: 131 NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDA 190
           +N+ RQ++ T   I + K + +      +N  + +   ++ L      + +++ ++V+D 
Sbjct: 66  SNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDC 125
Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN--YNGGPCYRCLFPTPPPTTACQ 248
           TDN  +R  I+  CV L  PL++ +A+G  GQL V    +  G CYRCL+P        +
Sbjct: 126 TDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPE--R 182
Query: 249 RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 308
            C  +GV+G V G++G LQALEAIK+ S +  P +G + LFD  S++ R + +R R+S C
Sbjct: 183 NCRTAGVVGPVVGVMGTLQALEAIKLLSGIETP-AGELRLFDGKSSQWRSLALR-RASGC 240
Query: 309 EACG 312
             CG
Sbjct: 241 PVCG 244

>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253

Iteration: 1
 Score =  151 bits (382), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 7/244 (2%)
Query: 71  IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
             RYSR +LL    ++GQ  LL S +L+IG GGLG+PA LYLA  GVG L + D D V L
Sbjct: 8   FMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL 67
Query: 131 NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDA 190
           +N+ RQ++ T   I + K + +      +N  + +   ++ L      + +++ ++V+D 
Sbjct: 68  SNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDC 127
Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN--YNGGPCYRCLFPTPPPTTACQ 248
           TDN  +R  I+  CV L  PL++ +A+G  GQL V    +  G CYRCL+P        +
Sbjct: 128 TDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPE--R 184
Query: 249 RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 308
            C  +GV+G V G++G LQALEAIK+ S +  P +G + LFD  S++ R + +R R+S C
Sbjct: 185 NCRTAGVVGPVVGVMGTLQALEAIKLLSGIETP-AGELRLFDGKSSQWRSLALR-RASGC 242
Query: 309 EACG 312
             CG
Sbjct: 243 PVCG 246

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 96  ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT 155
           +LV+GAGG+G   L  L   G   + ++D D ++++N++RQ +  + ++G+SK + A  +
Sbjct: 20  VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 79
Query: 156 CRSINSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214
                   +I+ + +++   +  +E   Q+ +V++A DN  +R  ++  C+    PL+  
Sbjct: 80  VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 139
Query: 215 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
              G  GQ+T        CY C    P PT
Sbjct: 140 GTAGYLGQVTTIKKGVTECYEC---HPKPT 166

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 96  ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT 155
           +LV+GAGG+G   L  L   G   + ++D D ++++N++RQ +  + ++G+SK + A  +
Sbjct: 22  VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 81
Query: 156 CRSINSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214
                   +I+ + +++   +  +E   Q+ +V++A DN  +R  ++  C+    PL+  
Sbjct: 82  VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 141
Query: 215 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
              G  GQ+T        CY C    P PT
Sbjct: 142 GTAGYLGQVTTIKKGVTECYEC---HPKPT 168

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 96  ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT 155
           +LV+GAGG+G   L  L   G   + ++D D ++++N++RQ +  + ++G+SK + A  +
Sbjct: 40  VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 99
Query: 156 CRSINSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214
                   +I+ + +++   +  +E   Q+ +V++A DN  +R  ++  C+    PL+  
Sbjct: 100 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 159
Query: 215 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
              G  GQ+T        CY C    P PT
Sbjct: 160 GTAGYLGQVTTIKKGVTECYEC---HPKPT 186

>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb Length = 358

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 59/278 (21%)
Query: 73  RYSRHLL-LPSFG---VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128
           RYSR+ L   S+G   V  Q  L  + ++++G GG+G+   + LA  G+G + ++D+D +
Sbjct: 91  RYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI 150
Query: 129 ELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVV 188
           E  N+ RQV+ +E  +G++K +         NS + + E    +     L  + + +I V
Sbjct: 151 ENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 210
Query: 189 DATDNAPSRY-MISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 247
            + D+  +    ++  CV   +P ++    G    + V+    GP Y       P  T C
Sbjct: 211 VSADHPFNLINWVNKYCVRANQPYINA---GYVNDIAVF----GPLY------VPGKTGC 257
Query: 248 QRC----AD---------------------SGVLGVVPGIIGCLQALEAIKVASAVGEPL 282
             C    AD                           V  +   L A + IK      EPL
Sbjct: 258 YECQKVVADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPL 317
Query: 283 SGRMLLFDALSARIRI----VKIR----GRSSQCEACG 312
           S        L+ RI I    +KI     GRS  C  CG
Sbjct: 318 S--------LNKRIGIWSDEIKIHSQNMGRSPVCSVCG 347

>pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp Length = 353

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 59/278 (21%)
Query: 73  RYSRHLL-LPSFG---VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128
           RYSR+ L   S+G   V  Q  L  + ++++G GG+G+   + LA  G+G + ++D+D +
Sbjct: 94  RYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI 153
Query: 129 ELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVV 188
           E  N+ RQV+ +E  +G++K +         NS + + E    +     L  + + +I V
Sbjct: 154 ENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 213
Query: 189 DATDNAPSRY-MISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 247
            + D+  +    ++  CV   +P ++    G    + V+    GP Y       P  T C
Sbjct: 214 VSADHPFNLINWVNKYCVRANQPYINA---GYVNDIAVF----GPLY------VPGKTGC 260
Query: 248 QRC----AD---------------------SGVLGVVPGIIGCLQALEAIKVASAVGEPL 282
             C    AD                           V  +   L A + IK      EPL
Sbjct: 261 YECQKVVADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPL 320
Query: 283 SGRMLLFDALSARIRI----VKIR----GRSSQCEACG 312
           S        L+ RI I    +KI     GRS  C  CG
Sbjct: 321 S--------LNKRIGIWSDEIKIHSQNMGRSPVCSVCG 350

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 24/197 (12%)
Query: 40  DTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVI 99
           D+  S P + T+S  + +P              RY   + +  FG E Q  +   S  ++
Sbjct: 376 DSLESLPSSVTISEETCKPRGC-----------RYDGQIAV--FGSEFQEKIASLSTFLV 422
Query: 100 GAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
           GAG +G   L   A  GV     G + + D D +E +N++RQ +     +G+ K + A+ 
Sbjct: 423 GAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECAST 482
Query: 155 TCRSINSTV--HIIEHREALRTSN----ALEILSQYEIVVDATDNAPSRYMISDCCVVLG 208
               +N ++   I  ++E +   +      E   +  +V +A DN  +R  +   CV   
Sbjct: 483 AVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFE 542
Query: 209 KPLVSGAALGLEGQLTV 225
           KPL+    LG +G   V
Sbjct: 543 KPLLESGTLGTKGNTQV 559

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLG-----SPALLYLAACGVGRLGIVDHDV 127
           RY   + +  FG++ Q  +  S + ++G+G +G     + ALL L +   G + + D+D 
Sbjct: 407 RYDNQIAV--FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDS 464
Query: 128 VELNNMHRQVIHTEPYIGQSKVKSAA-ATCR-------SINSTVHII--EHREALRTSNA 177
           +E +N++RQ +     +G++K + AA A C         IN+ +  +  E  E    S  
Sbjct: 465 IEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDS-- 522
Query: 178 LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV 225
                  + V +A DN  +R  +   CV   KPL+    LG +G   V
Sbjct: 523 --FWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQV 568

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 71  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 130
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
                    +++ H   ++  N      Q+ I+V   D+  +R  I+   + L       
Sbjct: 131 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 189
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
                  PL+ G   G +G   V       C  C     PP      C
Sbjct: 190 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 237

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 52  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 111
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
                    +++ H   ++  N      Q+ I+V   D+  +R  I+   + L       
Sbjct: 112 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 170
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
                  PL+ G   G +G   V       C  C     PP      C
Sbjct: 171 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 218

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
                    +++ H   ++  N      Q+ I+V   D+  +R  I+   + L       
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
                  PL+ G   G +G   V       C  C     PP      C
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 208

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 413 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 472
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
                    +++ H   ++  N      Q+ I+V   D+  +R  I+   + L       
Sbjct: 473 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 531
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
                  PL+ G   G +G   V       C  C     PP      C
Sbjct: 532 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 579

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
                    +++ H   ++  N      Q+ I+V   D+  +R  I+   + L       
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 243
                  PL+ G   G +G   V       C  C     PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPP 201

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
                    +++ H   ++  N      Q+ I+V   D+  +R  I+   + L       
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 243
                  PL+ G   G +G   V       C  C     PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPP 201

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 39  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 98
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
                    +++ H   ++  N      Q+ I+V   D+  +R  I+   + L       
Sbjct: 99  FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 157
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 243
                  PL+ G   G +G   V       C  C     PP
Sbjct: 158 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 198

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 95  SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
            +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ K + AA 
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
                    +++ H   ++  N      Q+ I+V   D+  +R  I+   + L       
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 243
                  PL+ G   G +G   V       C  C     PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 201

>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp Length = 292

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 112 LAACGVGRLGIVDHDVVELNNMHRQVIHTEPY-IGQSKVKSAAATCRSIN---------- 160
           L  CG+G+L + D+D VEL NM+R  +  +P+  G SKV++A  T R+IN          
Sbjct: 55  LTRCGIGKLLLFDYDKVELANMNR--LFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY 112
Query: 161 --STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV-SGAAL 217
             +TV   +H     ++  LE     ++V+   DN  +R  I+  C  LG+  + SG + 
Sbjct: 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE 172
Query: 218 -GLEGQLTVYNYNGGPCYRCLFPTPPPTTACQ----------RCADS--GVLGVVPGII 263
             + G + +       C+ C    PP   A             CA S    +GVV GI+
Sbjct: 173 NAVSGHIQLIIPGESACFAC---APPLVVAANIDEKTLKREGVCAASLPTTMGVVAGIL 228

>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex Length = 615

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 67  SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
           S D+  +  +  +LP   ++   N   + +L++GAG LG      L A GV ++  VD+ 
Sbjct: 303 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 359
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
            V  +N  RQ ++     G+ K + AAA+ + I           ++ +I H+     +  
Sbjct: 360 TVSYSNPVRQALYNFEDAGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 419
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
            +      ++ +++I+    D+  SR++ S    +  K +++ AALG +  L + + N  
Sbjct: 420 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 478
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 284
                   CY C     P  +   R  D       PG+     +L    + S +    SG
Sbjct: 479 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 538

>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 615

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 67  SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
           S D+  +  +  +LP   ++   N   + +L++GAG LG      L A GV ++  VD+ 
Sbjct: 303 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 359
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
            V  +N  RQ ++     G+ K + AAA+ + I           ++ +I H+     +  
Sbjct: 360 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 419
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
            +      ++ +++I+    D+  SR++ S    +  K +++ AALG +  L + + N  
Sbjct: 420 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 478
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 284
                   CY C     P  +   R  D       PG+     +L    + S +    SG
Sbjct: 479 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 538

>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2 Architecture And Mechanism In The Autophagy Pathway Length = 344

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 67  SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
           S D+  +  +  +LP   ++   N   + +L++GAG LG      L A GV ++  VD+ 
Sbjct: 15  SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 71
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
            V  +N  RQ ++     G+ K + AAA+ + I           ++ +I H+     +  
Sbjct: 72  TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 131
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
            +      ++ +++I+    D+  SR++ S    +  K +++ AALG +  L + + N  
Sbjct: 132 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 190
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGI 262
                   CY C     P  +   R  D       PG+
Sbjct: 191 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGV 228

>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 67  SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
           S D+  +  +  +LP   ++   N   + +L++GAG LG      L A GV ++  VD+ 
Sbjct: 11  SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
            V  +N  RQ ++     G+ K + AAA+ + I           ++ +I H+     +  
Sbjct: 68  TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 127
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
            +      ++ +++I+    D+  SR++ S    +  K +++ AALG +  L + + N  
Sbjct: 128 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 186
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGI 262
                   CY C     P  +   R  D       PG+
Sbjct: 187 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGV 224

>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613) Length = 616

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 67  SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
           S D+  +  +  +LP   ++   N   + +L++GAG LG      L A GV ++  VD+ 
Sbjct: 304 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
            V  +N  RQ ++     G+ K + AAA+ + I           ++ +I H+     +  
Sbjct: 361 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 420
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
            +      ++ +++I+    D+  SR++ S    +  K +++ AALG +  L + + N  
Sbjct: 421 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 479
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 284
                   CY C     P  +   R  D       PG+     +L    + S +    SG
Sbjct: 480 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 539

>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595) Length = 598

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 67  SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
           S D+  +  +  +LP   ++   N   + +L++GAG LG      L A GV ++  VD+ 
Sbjct: 304 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
            V  +N  RQ ++     G+ K + AAA+ + I           ++ +I H+     +  
Sbjct: 361 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 420
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
            +      ++ +++I+    D+  SR++ S    +  K +++ AALG +  L + + N  
Sbjct: 421 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 479
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 284
                   CY C     P  +   R  D       PG+     +L    + S +    SG
Sbjct: 480 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 539

>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 26/218 (11%)
Query: 67  SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
           S D+  +  +  +LP   ++   N   + +L++GAG LG      L A GV ++  VD+ 
Sbjct: 11  SVDLNLKLXKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCR-------------SINSTVHIIEHREALR 173
            V  +N  RQ ++     G+ K + AAA+ +             SI    H + + EA  
Sbjct: 68  TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLXDATGVKLSIPXIGHKLVNEEAQH 127
Query: 174 T--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
                   ++ +++I+    D+  SR++ S    +  K +++ AALG +  L   + N  
Sbjct: 128 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVXRHGNRD 186
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGI 262
                   CY C     P  +   R  D       PG+
Sbjct: 187 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQXSTVTRPGV 224

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 65  GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD 124
           G+S +   +Y R + L  +G+E Q  L  S +L++G  GLG+     L   GV  L ++D
Sbjct: 10  GISEEEAAQYDRQIRL--WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67
Query: 125 HDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI 165
           H+ V   +   Q +     +G+++ +++    +++N  V +
Sbjct: 68  HEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDV 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	1e-143
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	1e-138
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	1e-125
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	1e-110
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-103
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	3e-99
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	2e-62
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	1e-60
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	1e-57
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-35
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	4e-30
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	7e-34
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	5e-04

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score =  404 bits (1041), Expect = e-143
 Identities = 96/249 (38%), Positives = 152/249 (61%), Gaps = 4/249 (1%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           LS   + RY+R ++L  F  +GQ  L  S +L++G GGLG  A  YLA+ GVG L ++D 
Sbjct: 4   LSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 63

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D V L+N+ RQ +H++  +GQ KV+SA      IN  + I      L  +    ++++++
Sbjct: 64  DTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHD 123

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRCLFPTPPPT 244
           +V+D TDN   R  ++  C     PLVSGAA+ +EGQ+TV+ Y +G PCYRCL       
Sbjct: 124 LVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGE- 182

Query: 245 TACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR 304
                C ++GV+  + G+IG LQA+EAIK+ +  G+P SG+++++DA++ + R +K+  R
Sbjct: 183 -NALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLM-R 240

Query: 305 SSQCEACGE 313
           +  CE CG+
Sbjct: 241 NPGCEVCGQ 249

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score =  391 bits (1006), Expect = e-138
 Identities = 93/254 (36%), Positives = 144/254 (56%), Gaps = 5/254 (1%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           ++     RYSR +LL    ++GQ  LL S +L+IG GGLG+PA LYLA  GVG L + D 
Sbjct: 1   MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD 60

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D V L+N+ RQ++ T   I + K + +      +N  + +   ++ L      + +++ +
Sbjct: 61  DDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARAD 120

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRCLFPTPPPT 244
           +V+D TDN  +R  I+  CV L  PL++ +A+G  GQL V        CYRCL+P     
Sbjct: 121 VVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQE- 179

Query: 245 TACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR 304
              + C  +GV+G V G++G LQALEAIK+ S +  P +G + LFD  S++ R + +R R
Sbjct: 180 -PERNCRTAGVVGPVVGVMGTLQALEAIKLLSGIETP-AGELRLFDGKSSQWRSLALR-R 236

Query: 305 SSQCEACGENSTFT 318
           +S C  CG ++   
Sbjct: 237 ASGCPVCGGSNADP 250

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score =  322 bits (828), Expect = e-110
 Identities = 58/295 (19%), Positives = 107/295 (36%), Gaps = 38/295 (12%)

Query: 66  LSPDMIYRYSRHLLLPSF--------GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV 117
           +     + +    L+P           V     +   ++ ++G GG+GS     L  CG+
Sbjct: 1   MGSSHHHHHHSSGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGI 60

Query: 118 GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT--- 174
           G+L + D+D VEL NM+R         G SKV++A  T R+IN  V    H   + T   
Sbjct: 61  GKLLLFDYDKVELANMNRL-FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVEN 119

Query: 175 ---------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL--GLEGQL 223
                    +  LE     ++V+   DN  +R  I+  C  LG+  +        + G +
Sbjct: 120 FQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHI 179

Query: 224 TVYNYNGGPCYRCLFPTPPPT----TACQR-CADSGVLGVVPGIIGCLQALEAIKVASAV 278
            +       C+ C  P            +R    +  L    G++  +     +K     
Sbjct: 180 QLIIPGESACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNF 239

Query: 279 GEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQS 333
           G       L ++A+      + ++  + QC+             +  +Y+K   +
Sbjct: 240 GTV--SFYLGYNAMQDFFPTMSMK-PNPQCDDRNCRK-------QQEEYKKKVAA 284

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score =  305 bits (782), Expect = e-103
 Identities = 56/279 (20%), Positives = 101/279 (36%), Gaps = 35/279 (12%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
            S D+  +  +  +LP   ++    +  + +L++GAG LG      L A GV ++  VD+
Sbjct: 10  QSVDLNLKLMKWRILPDLNLD---IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN 66

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII---------------EHRE 170
             V  +N  RQ ++     G+ K + AAA+ + I   +                  E  +
Sbjct: 67  GTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQ 126

Query: 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN- 229
                    ++ +++I+    D+  SR++ S    +  K ++  AALG +  L + + N 
Sbjct: 127 HKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNR 185

Query: 230 ------GGPCYRCLFPTPPP--TTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEP 281
                    CY C     P    T       S V      ++    A+E +         
Sbjct: 186 DEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMSTVTRPGVAMMASSLAVELMTSLLQTKYS 245

Query: 282 LSGRMLLFD------ALSARIRIVKIRG-RSSQCEACGE 313
            S   +L D             I+K+       C AC  
Sbjct: 246 GSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSP 284

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score =  304 bits (779), Expect = 3e-99
 Identities = 55/279 (19%), Positives = 100/279 (35%), Gaps = 35/279 (12%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
            S D+  +  +  +LP   ++    +  + +L++GAG LG      L A GV ++  VD+
Sbjct: 303 QSVDLNLKLMKWRILPDLNLD---IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN 359

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII---------------EHRE 170
             V  +N  RQ ++     G+ K + AAA+ + I   +                  E  +
Sbjct: 360 GTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQ 419

Query: 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN- 229
                    ++ +++I+    D+  SR++ S    +  K ++  AALG +  L + + N 
Sbjct: 420 HKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNR 478

Query: 230 ------GGPCYRCLFPTPPP--TTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEP 281
                    CY C     P    T         V      ++    A+E +         
Sbjct: 479 DEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYS 538

Query: 282 LSGRMLLFD------ALSARIRIVKIRG-RSSQCEACGE 313
            S   +L D             I+K+       C AC  
Sbjct: 539 GSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSP 577

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score =  208 bits (531), Expect = 2e-62
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 2/168 (1%)

Query: 79  LLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVI 138
           L      E    +    +LV+GAGG+G   L  L   G   + ++D D ++++N++RQ +
Sbjct: 3   LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFL 62

Query: 139 HTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS-NALEILSQYEIVVDATDNAPSR 197
             + ++G+SK + A  +        +I+ + +++      +E   Q+ +V++A DN  +R
Sbjct: 63  FQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAAR 122

Query: 198 YMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 245
             ++  C+    PL+     G  GQ+T        CY C  P P   T
Sbjct: 123 NHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYEC-HPKPTQRT 169

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score =  199 bits (508), Expect = 1e-60
 Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 19/214 (8%)

Query: 69  DMIYRYSRHLLLPSF---GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
                 S     P F       Q  L    +LVIGAGGLG   L  LA  G  ++ ++D 
Sbjct: 13  KKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM 72

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D ++++N++RQ +     IG+ K + AA          +++ H   ++  N      Q+ 
Sbjct: 73  DTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFND-TFYRQFH 131

Query: 186 IVVDATDNAPSRYMISDCCVVLGK------------PLVSGAALGLEGQLTVYNYNGGPC 233
           I+V   D+  +R  I+   + L              PL+ G   G +G   V       C
Sbjct: 132 IIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTAC 191

Query: 234 YRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQ 267
             C     PP      C  + +  +      C++
Sbjct: 192 IECTLELYPPQVNFPMCTIASMPRL---PEHCIE 222

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  189 bits (481), Expect = 1e-57
 Identities = 33/210 (15%), Positives = 72/210 (34%), Gaps = 5/210 (2%)

Query: 58  PSSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV 117
                  G+S +   +Y R + L  +G+E Q  L  S +L++G  GLG+     L   GV
Sbjct: 3   EKEEAGGGISEEEAAQYDRQIRL--WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGV 60

Query: 118 GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNA 177
             L ++DH+ V   +   Q +     +G+++ +++    +++N  V +    E +     
Sbjct: 61  KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDI-EKKP 119

Query: 178 LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY--NYNGGPCYR 235
               +Q++ V     +      +   C        +G   G  G        +       
Sbjct: 120 ESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKT 179

Query: 236 CLFPTPPPTTACQRCADSGVLGVVPGIIGC 265
            +               + +      ++  
Sbjct: 180 KVAKVSQGVEDGPDTKRAKLDSSETTMVKK 209

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  136 bits (343), Expect = 1e-35
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 8/202 (3%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
            YSR L +   G E    +  S++L++G  GLG      +   GV  + + D + V+L +
Sbjct: 9   LYSRQLYV--LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLAD 66

Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVV-DAT 191
           +  Q   TE  IGQ +     A    +N+ V +      L + + +  LSQ+++VV   T
Sbjct: 67  LSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPV----NVLDSLDDVTQLSQFQVVVATDT 122

Query: 192 DNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA 251
            +   +  I++ C   G   +S    GL G   V   +           P          
Sbjct: 123 VSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEEPRTGMVSD-IE 181

Query: 252 DSGVLGVVPGIIGCLQALEAIK 273
             G + ++      L+    ++
Sbjct: 182 PDGTVTMLDDNRHGLEDGNFVR 203

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  120 bits (301), Expect = 4e-30
 Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 11/176 (6%)

Query: 83  FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQV 137
           FG++ Q  +  S + ++G+G +G   L   A  G+     G + + D+D +E +N++RQ 
Sbjct: 415 FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQF 474

Query: 138 IHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALE------ILSQYEIVVDAT 191
           +     +G++K + AA    ++N  +    + +  +     E           + V +A 
Sbjct: 475 LFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNAL 534

Query: 192 DNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 247
           DN  +R  +   CV   KPL+    LG +G   V        Y      P  +   
Sbjct: 535 DNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPL 590

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  129 bits (326), Expect = 7e-34
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 5/174 (2%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
           +Y R L L  +G  GQ  L  + + +I A   G+  L  L   G+G   I+D + V   +
Sbjct: 14  KYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 71

Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT--SNALEILSQYEIVVDA 190
                      IG+++ ++A    + +NS V      E+      N      ++ +VV  
Sbjct: 72  AGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVAT 131

Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
                +   ++D       PL+     GL G + +      P            
Sbjct: 132 QLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRII-IKEHPVIESHPDNALED 184

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 13/175 (7%)

Query: 88  QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQS 147
           Q  L    +LVIGAGGLG   L  LA  G  ++ ++D D ++++N++RQ +     IG+ 
Sbjct: 406 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 465

Query: 148 KVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL 207
           K + AA          +++ H   ++  N      Q+ I+V   D+  +R  I+   + L
Sbjct: 466 KAEVAAEFLNDRVPNCNVVPHFNKIQDFN-DTFYRQFHIIVCGLDSIIARRWINGMLISL 524

Query: 208 ------------GKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
                         PL+ G   G +G   V       C  C     PP      C
Sbjct: 525 LNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 54/368 (14%), Positives = 109/368 (29%), Gaps = 106/368 (28%)

Query: 1   METNGGSTDVARVLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYR-PS 59
           + +      V + + E+      + +  + +S ++ + R     QP   T      R   
Sbjct: 71  LLSKQEEM-VQKFVEEVL-----RINYKFLMSPIKTEQR-----QPSMMTRMYIEQRDRL 119

Query: 60  SAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLK----SSILVIGAGGLGSPALLYLAAC 115
              +   +   + R   +L L       +  LL+     ++L+ G  G G   +  L  C
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVA-LDVC 171

Query: 116 GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS 175
                    + V    +     I    ++      S       +   ++ I+     R+ 
Sbjct: 172 ---L----SYKVQCKMDFK---IF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 176 NALEILSQYEIVVDATDNAPSRYMIS----DCCVVLGKPLVSGAALGLEGQLTVYN---- 227
           ++    S  ++ + +      R + S    +C +VL                 V N    
Sbjct: 219 HS----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---------------VQNAKAW 259

Query: 228 --YNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGR 285
             +N   C + L      TT   R     V   +        +L+   +     E  S  
Sbjct: 260 NAFNLS-C-KILL-----TT---R--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-- 305

Query: 286 MLLFDALSARIRIVKIRGRSSQCEACGEN----STF---------TQDHFRNFDYEKFTQ 332
             L        R   +       E    N    S           T D++++ + +K   
Sbjct: 306 --LL-LKYLDCRPQDLPR-----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--- 354

Query: 333 SPLSTILE 340
             L+TI+E
Sbjct: 355 --LTTIIE 360

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 89  SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT 140
           SN ++ +I V+GAG +G      L       + + DHD+  L  ++R  + T
Sbjct: 1   SNAMRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVAT 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	100.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	100.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.17
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.96
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.88
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.83
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.78
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.74
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.69
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.67
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.64
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.56
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.48
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.46
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.42
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.41
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.36
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.35
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.33
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.3
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.29
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.24
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.2
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.12
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.06
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.04
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.04
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.97
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.92
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.85
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.81
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.8
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.79
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.78
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.75
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.72
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.7
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.69
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.68
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.67
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.64
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.61
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.6
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.6
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.58
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.58
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.55
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.54
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.53
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.48
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.48
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.47
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.43
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.43
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.42
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.4
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.37
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.36
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.36
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	96.36
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.34
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.34
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.33
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.32
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.31
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.31
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.28
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.28
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.28
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.26
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.25
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.24
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.24
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.24
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.22
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.22
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.21
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.21
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.2
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.19
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.19
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.17
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.14
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.14
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.14
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.13
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.12
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.12
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.11
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.1
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.08
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.07
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.06
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.05
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.05
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.03
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.97
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.96
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.95
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.95
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.93
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.93
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.91
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.91
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	95.91
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.9
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.89
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.89
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.88
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.87
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.87
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.84
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.83
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.83
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.81
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.81
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.81
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.8
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.75
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.73
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.73
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.72
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.71
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.71
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.71
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.7
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.7
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.69
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.69
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.67
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.67
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.66
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.66
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.61
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.61
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.6
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.6
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.58
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	95.58
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.58
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.53
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.53
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.53
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.53
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.52
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.51
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.51
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.5
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.5
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.49
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.49
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.49
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.48
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.48
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.47
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.47
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.46
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.46
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.45
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.45
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.42
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.41
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.38
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.37
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.37
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.36
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.36
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.34
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.34
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.34
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.34
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.31
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.31
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.31
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.3
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.26
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.26
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.26
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.25
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.23
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	95.19
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.19
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.15
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.14
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.12
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.12
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	95.09
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.09
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.09
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.08
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.08
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.08
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.04
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.03
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.03
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.02
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	95.01
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.01
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.99
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.99
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.99
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.99
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	94.98
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	94.97
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	94.97
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.95
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	94.95
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.94
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	94.93
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.92
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	94.9
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.9
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.9
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	94.86
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.85
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	94.84
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	94.83
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.81
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	94.81
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	94.81
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.8
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.8
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	94.79
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	94.77
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	94.77
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	94.76
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.74
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.72
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.72
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.71
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.69
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	94.69
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.68
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	94.68
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	94.67
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	94.67
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.67
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.65
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.63
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	94.56
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	94.56
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	94.56
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.54
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.53
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.53
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.51
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.48
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.44
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.43
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.41
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	94.41
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	94.38
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.37
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.37
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	94.35
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.34
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.33
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.33
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	94.33
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	94.33
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.32
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.31
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.3
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.3
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.3
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.29
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	94.29
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.25
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.24
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	94.23
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	94.23
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.22
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	94.21
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.2
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	94.2
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.19
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	94.19
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	94.19
1lnq_A	336	MTHK channels, potassium channel related protein;	94.18
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.17
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.17
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	94.16
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.14
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.09
4hb9_A	412	Similarities with probable monooxygenase; flavin,	94.09
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	94.08
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.08
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	94.07
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.05
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.05
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	94.04
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.03
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	94.01
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	94.0
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	93.99
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	93.98
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.97
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	93.97
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.95
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	93.93
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	93.92
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	93.9
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	93.9
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.89
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.86
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.83
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.81
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	93.81
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.79
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.79
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.78
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	93.76
4f6c_A	427	AUSA reductase domain protein; thioester reductase	93.76
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.73
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.71
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	93.69
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	93.68
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	93.68
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	93.66
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.66
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.65
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.62
3rih_A	293	Short chain dehydrogenase or reductase; structural	93.6
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.58
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.57
1spx_A	278	Short-chain reductase family member (5L265); paral	93.56
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.55
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	93.55
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.55
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	93.54
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	93.52
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.51
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	93.51
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	93.51
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	93.51
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.5
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.5
3imf_A	257	Short chain dehydrogenase; structural genomics, in	93.5
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.5
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.48
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.45
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.45
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	93.44
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	93.44
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.44
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	93.44
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.43
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	93.42
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.41
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.41
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	93.4
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	93.4
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	93.39
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.38
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	93.38
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	93.37
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	93.37
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.36
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	93.35
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.35
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.34
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.34
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.33
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.33
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	93.32
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	93.32
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.32
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	93.31
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.28
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.27
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	93.26
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	93.25
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.23
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.21
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	93.2
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.19
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	93.19
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	93.18
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.17
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	93.13
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.13
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	93.12
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.11
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	93.11
1xq1_A	266	Putative tropinone reducatse; structural genomics,	93.11
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.09
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.08
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.08
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.07
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	93.06
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	93.05
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	93.04
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.04
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.03
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	93.03
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.01
3cxt_A	291	Dehydrogenase with different specificities; rossma	93.0
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	92.99
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	92.99
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.98
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.97
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.97
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	92.95
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.95
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.94
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	92.93
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	92.91
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.9
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	92.89
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.87
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	92.87
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	92.87
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	92.84
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.8
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	92.8
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	92.78
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	92.78
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	92.74
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.74
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	92.73
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	92.72
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.72
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	92.7
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	92.7
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	92.7
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	92.67
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	92.66
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	92.65
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	92.65
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	92.62
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	92.62
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	92.59
2cul_A	232	Glucose-inhibited division protein A-related PROT	92.59
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	92.57
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	92.57
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	92.55
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	92.53
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	92.53
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.52
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	92.51
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	92.5
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	92.5
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	92.49
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.48
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	92.45
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	92.44
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	92.43
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	92.41
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	92.4
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	92.4
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	92.39
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	92.38
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	92.38
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.37
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	92.37
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	92.36
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	92.36
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	92.35
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.35
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	92.33
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	92.32
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	92.31
1ydw_A	362	AX110P-like protein; structural genomics, protein	92.31
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	92.31
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	92.31
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.29
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.29
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.28
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.27
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.27
1xkq_A	280	Short-chain reductase family member (5D234); parra	92.27
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	92.24
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	92.24
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	92.24
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	92.24
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	92.23
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	92.22
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	92.19
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	92.17
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	92.16
2duw_A	145	Putative COA-binding protein; ligand binding prote	92.15
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	92.12
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	92.11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	92.08
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	92.07
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.06
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.04
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	92.03

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=3.1e-57  Score=419.64  Aligned_cols=246  Identities=38%  Similarity=0.692  Sum_probs=225.3

Q ss_pred             CCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccC
Q 019513           66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG  145 (340)
Q Consensus        66 l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG  145 (340)
                      ||++|.+||+||++++.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||++|+++|||
T Consensus         1 l~~~e~~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG   80 (251)
T 1zud_1            1 MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDID   80 (251)
T ss_dssp             CCHHHHHHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTT
T ss_pred             CCHHHHHHhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEE
Q 019513          146 QSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV  225 (340)
Q Consensus       146 ~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v  225 (340)
                      ++|+++++++|+++||+++++.+...++.++..++++++|+||+|+|++.+|++|+++|++.++|||++++.|+.|++.+
T Consensus        81 ~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~~  160 (251)
T 1zud_1           81 RPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMV  160 (251)
T ss_dssp             SBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEBTEEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccccceEEEE
Confidence            99999999999999999999999998988888889999999999999999999999999999999999999999999999


Q ss_pred             EeCCC-CCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCC
Q 019513          226 YNYNG-GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR  304 (340)
Q Consensus       226 ~~~~~-~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~  304 (340)
                      +.|+. ++||+|+|+..++.  ...|...|+++|+++++|+++|.|+||+|+|.+++. ++++.||+.++.++.+++. +
T Consensus       161 ~~p~~~~~c~~cl~~~~~~~--~~~~~~~g~~~p~~~~~g~~~A~e~lk~l~g~~~~~-~~~~~~d~~~~~~~~~~~~-~  236 (251)
T 1zud_1          161 LTPPWEQGCYRCLWPDNQEP--ERNCRTAGVVGPVVGVMGTLQALEAIKLLSGIETPA-GELRLFDGKSSQWRSLALR-R  236 (251)
T ss_dssp             ECTTCTTCCHHHHCC-------------CCBCHHHHHHHHHHHHHHHHHHHHTCCCCC-SEEEEEETTTTEEEEEECC-C
T ss_pred             EccCCCCCcEEEeCCCCCCC--CCccccCCchHHHHHHHHHHHHHHHHHHHhCCCCcC-CcEEEEECCCCEEEEEecC-C
Confidence            88876 79999999865443  247888999999999999999999999999998875 8999999999999999998 8


Q ss_pred             CCCCCccCCCC
Q 019513          305 SSQCEACGENS  315 (340)
Q Consensus       305 ~~~C~~Cg~~~  315 (340)
                      +|+||+||..+
T Consensus       237 ~p~C~~C~~~~  247 (251)
T 1zud_1          237 ASGCPVCGGSN  247 (251)
T ss_dssp             CTTCTTTCC--
T ss_pred             CcCCCccCCCC
Confidence            99999999764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=2.7e-57  Score=427.33  Aligned_cols=240  Identities=23%  Similarity=0.409  Sum_probs=190.4

Q ss_pred             hhhhhhccCCCCCH-HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513           72 YRYSRHLLLPSFGV-EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK  150 (340)
Q Consensus        72 ~ry~Rq~~l~~~G~-~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~  150 (340)
                      ..|+|||.|++||. ++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||+ |.++|+|++|++
T Consensus        14 ~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~   92 (292)
T 3h8v_A           14 LVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQ   92 (292)
T ss_dssp             ------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHHH
T ss_pred             CCchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHH
Confidence            58999999999998 9999999999999999999999999999999999999999999999999986 578899999999


Q ss_pred             HHHHHHHhhCCCceEEEecccCCc-ccHHhhc-----------ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecC
Q 019513          151 SAAATCRSINSTVHIIEHREALRT-SNALEIL-----------SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALG  218 (340)
Q Consensus       151 ~a~~~L~~lnp~v~i~~~~~~~~~-~~~~~~l-----------~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g  218 (340)
                      +++++|+++||+++|+++...+++ ++..+++           +++|+||||+||+++|++||++|+++++|||++++.+
T Consensus        93 aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~  172 (292)
T 3h8v_A           93 AAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE  172 (292)
T ss_dssp             HHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECT
T ss_pred             HHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeec
Confidence            999999999999999999999986 5555554           6899999999999999999999999999999998875


Q ss_pred             --ceeEEEEEeCCCCCceeecCCCCCCCc-ccccccCCCc----cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEc
Q 019513          219 --LEGQLTVYNYNGGPCYRCLFPTPPPTT-ACQRCADSGV----LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDA  291 (340)
Q Consensus       219 --~~G~i~v~~~~~~pC~~C~~~~~~~~~-~~~~c~~~g~----~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~  291 (340)
                        +.|++.++.|+.+|||+|+||..++.. ....|...|+    ++|+++++|+|+|.||||+|+|.+++  ++++.||+
T Consensus       173 ~~~~Gqv~~~~pg~t~Cy~Cl~p~~~~~~~~~~~~~~~gvc~~~l~~~~g~vgslqA~EalK~L~g~g~~--~~ll~~D~  250 (292)
T 3h8v_A          173 NAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTV--SFYLGYNA  250 (292)
T ss_dssp             TSSEEEEEEECTTTSCCTTSSSCCCCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC--CSEEEEET
T ss_pred             ceeEEEEEEECCCCCCCHhhcCCccccccccccchhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCC--CeEEEEEC
Confidence              899999999999999999998765432 2346777666    89999999999999999999999986  78999999


Q ss_pred             CCCcEEEEEecCCCCCCC--ccCCCC
Q 019513          292 LSARIRIVKIRGRSSQCE--ACGENS  315 (340)
Q Consensus       292 ~~~~~~~~~l~~~~~~C~--~Cg~~~  315 (340)
                      .+++|++++++ |+|+||  +||++.
T Consensus       251 ~~~~~~~~~~~-~~p~C~~~~Cg~~~  275 (292)
T 3h8v_A          251 MQDFFPTMSMK-PNPQCDDRNCRKQQ  275 (292)
T ss_dssp             TTTBCCEECCC-CCTTCSCHHHHHHH
T ss_pred             CCCcEEEEecC-CCcCcCccccCCch
Confidence            99999999998 999999  999743

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=100.00  E-value=3.8e-56  Score=411.85  Aligned_cols=246  Identities=39%  Similarity=0.733  Sum_probs=228.4

Q ss_pred             CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513           65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI  144 (340)
Q Consensus        65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di  144 (340)
                      .|+++|++||+||+++++||.++|++|++++|+|||+||+|++++++|+++|+++|+|+|.|.|+++||+||++|+++||
T Consensus         3 ~l~~~e~~ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~di   82 (249)
T 1jw9_B            3 ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATV   82 (249)
T ss_dssp             CCCHHHHHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGT
T ss_pred             CCCHHHHHHhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513          145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT  224 (340)
Q Consensus       145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~  224 (340)
                      |++|+++++++|+++||++++..+...+++++..++++++|+||+|+|++++++.++++|++.++|+|+++..|+.|++.
T Consensus        83 G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~g~v~  162 (249)
T 1jw9_B           83 GQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQIT  162 (249)
T ss_dssp             TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEE
T ss_pred             CcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeeccceEEEE
Confidence            99999999999999999999999998888777788899999999999999999999999999999999999999999999


Q ss_pred             EEeCCC-CCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecC
Q 019513          225 VYNYNG-GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG  303 (340)
Q Consensus       225 v~~~~~-~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~  303 (340)
                      ++.|+. +|||+|+|+..++.  ..+|...|+++|+++++|+++|.|+||+|+|.++++.++++.||+.++.|+.+++. 
T Consensus       163 ~~~p~~~~~c~~c~~~~~~~~--~~~c~~~g~~~~~~~~~g~~~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~-  239 (249)
T 1jw9_B          163 VFTYQDGEPCYRCLSRLFGEN--ALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLM-  239 (249)
T ss_dssp             EECCCTTCCCTHHHHTTCCC---------CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEEEEEECC-
T ss_pred             EEeCCCCCCceEEECCCCCcc--cccccccCCcchHHHHHHHHHHHHHHHHHhCCCCCccCeEEEEECCCCEEEEEecC-
Confidence            998876 79999999875432  34698999999999999999999999999999998889999999999999999998 


Q ss_pred             CCCCCCccCC
Q 019513          304 RSSQCEACGE  313 (340)
Q Consensus       304 ~~~~C~~Cg~  313 (340)
                      |+|+||+||+
T Consensus       240 ~~~~C~~C~~  249 (249)
T 1jw9_B          240 RNPGCEVCGQ  249 (249)
T ss_dssp             CCTTCTTTC-
T ss_pred             CCcCCCCcCc
Confidence            8999999984

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=100.00  E-value=1.8e-49  Score=380.09  Aligned_cols=228  Identities=20%  Similarity=0.262  Sum_probs=203.3

Q ss_pred             CCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC
Q 019513           83 FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST  162 (340)
Q Consensus        83 ~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~  162 (340)
                      |+..++++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+.+|+|++|+++++++|+++||+
T Consensus        24 l~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~  103 (340)
T 3rui_A           24 LPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL  103 (340)
T ss_dssp             CTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCC
Confidence            44445679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEecccC---------------CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEe
Q 019513          163 VHIIEHREAL---------------RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN  227 (340)
Q Consensus       163 v~i~~~~~~~---------------~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~  227 (340)
                      ++++++...+               +.++..++++++|+||+|+|++++|+++|++|+.+++|+|+++ .|+.|++.+++
T Consensus       104 v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~G~~G~l~v~~  182 (340)
T 3rui_A          104 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMRH  182 (340)
T ss_dssp             CEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-ECSSEEEEEEC
T ss_pred             CEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-ecceEEEEEee
Confidence            9999988654               3345678899999999999999999999999999999999975 99999998875


Q ss_pred             -------CCCCCceeecCCCCCCCccc-----ccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCC-----CCeE-EEE
Q 019513          228 -------YNGGPCYRCLFPTPPPTTAC-----QRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPL-----SGRM-LLF  289 (340)
Q Consensus       228 -------~~~~pC~~C~~~~~~~~~~~-----~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~-----~~~~-~~f  289 (340)
                             ++.+|||+|.++..|.....     +.|.   +++|+++++|+++|+|+||+|++.+.+.     .|++ +.|
T Consensus       183 g~~~~~~~~~~~Cy~C~~~~~p~~~~~~~t~~~~c~---v~~p~vg~igs~qA~E~lk~l~~~~~~~~~~~~~G~l~~~~  259 (340)
T 3rui_A          183 GNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMST---VTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQI  259 (340)
T ss_dssp             CCCCSSCCCCBCCGGGGSSSCCCCCTTTCCCGGGGG---CSCHHHHHHHHHHHHHHHHHHTSCCCTTSSEETTEECCSEE
T ss_pred             cccccCCCCCCCeeeeCCCCCCcccccccccCCCcc---eecchHHHHHHHHHHHHHHHHhCCCCCccccCccCcccEEE
Confidence                   35789999999876543221     3455   9999999999999999999999998664     4775 899


Q ss_pred             EcCCCcEEEEEecC-CCCCCCccCCC
Q 019513          290 DALSARIRIVKIRG-RSSQCEACGEN  314 (340)
Q Consensus       290 d~~~~~~~~~~l~~-~~~~C~~Cg~~  314 (340)
                      |++.+.|+++++++ ++|.|++||+.
T Consensus       260 d~~~~~f~~~~l~~~~~~~C~~C~~~  285 (340)
T 3rui_A          260 RGFLHNFSILKLETPAYEHCPACSPK  285 (340)
T ss_dssp             EEETTTTEEEEECCBCCTTCTTTCHH
T ss_pred             ecCcCCceEEEecCCCCCCCCCCCHH
Confidence            99999999999985 68999999983

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=100.00  E-value=1.1e-47  Score=389.53  Aligned_cols=245  Identities=22%  Similarity=0.268  Sum_probs=213.8

Q ss_pred             CCHHHHhhhhhhccC-----CCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccC
Q 019513           66 LSPDMIYRYSRHLLL-----PSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT  140 (340)
Q Consensus        66 l~~~e~~ry~Rq~~l-----~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~  140 (340)
                      |.+.+..++++.+.+     +-|+..++++|++++|+|||+||+||++|++|+++|||+|+|||+|.|+.+||+||++|+
T Consensus       294 ~dp~~la~~~~~Lnlklm~wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~  373 (615)
T 4gsl_A          294 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN  373 (615)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCC
T ss_pred             CCHHHHHhhhhhhhhHHHHHhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCC
Confidence            677788888887722     114555667999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCcccHHHHHHHHHhhCCCceEEEecccC---------------CcccHHhhcccCcEEEEcCCChhhHHHHHHHHH
Q 019513          141 EPYIGQSKVKSAAATCRSINSTVHIIEHREAL---------------RTSNALEILSQYEIVVDATDNAPSRYMISDCCV  205 (340)
Q Consensus       141 ~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~---------------~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~  205 (340)
                      .+|||++|+++++++|+++||+++++++...+               +.++..++++++|+||+|+|++++|++++++|+
T Consensus       374 ~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~  453 (615)
T 4gsl_A          374 FEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSN  453 (615)
T ss_dssp             GGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHH
T ss_pred             hhhcChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999988544               335667888999999999999999999999999


Q ss_pred             HcCCcEEEEeecCceeEEEEEe-------CCCCCceeecCCCCCCCcc-----cccccCCCccccHHHHHHHHHHHHHHH
Q 019513          206 VLGKPLVSGAALGLEGQLTVYN-------YNGGPCYRCLFPTPPPTTA-----CQRCADSGVLGVVPGIIGCLQALEAIK  273 (340)
Q Consensus       206 ~~~~p~i~~~~~g~~G~i~v~~-------~~~~pC~~C~~~~~~~~~~-----~~~c~~~g~~gpv~~i~g~l~A~eaik  273 (340)
                      .+++|+|+++ .|+.|++.+++       ++.+|||+|+++..|....     .+.|.   +++|++|++|+++|+|+||
T Consensus       454 ~~~~PlI~aa-lG~~Gql~v~~g~~~~~~~~~~~CY~Cl~~~~P~~~~~~rtl~~~C~---Vl~P~vgiigs~qA~EaLk  529 (615)
T 4gsl_A          454 IENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCT---VTRPGVAMMASSLAVELMT  529 (615)
T ss_dssp             HTTCEEEEEE-ECSSEEEEEECCC------CCCCCTTTSCSSCTTSCTTTTTTTCTTC---CCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCeEEEEE-ccceeEEEEeecccccCCCCCCCceeeCCCCCCcccccccccccCcc---eecchHHHHHHHHHHHHHH
Confidence            9999999975 99999998864       3578999999886654321     13465   9999999999999999999


Q ss_pred             HHhcCCCCC-----CCeE-EEEEcCCCcEEEEEecC-CCCCCCccCCC
Q 019513          274 VASAVGEPL-----SGRM-LLFDALSARIRIVKIRG-RSSQCEACGEN  314 (340)
Q Consensus       274 ~l~g~~~~~-----~~~~-~~fd~~~~~~~~~~l~~-~~~~C~~Cg~~  314 (340)
                      +|+|.+.+.     .|++ +.||++.+.|++++++. ++|.|++||+.
T Consensus       530 ~Ll~~g~~~~~~~~~G~l~~~~dg~~~~f~~~~l~~~~~p~C~~C~~~  577 (615)
T 4gsl_A          530 SLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPK  577 (615)
T ss_dssp             HHHSCCCTTSSEETTEECCSEEEEETTTTEEEEECCCCCTTCTTTCHH
T ss_pred             HHhCCCCcccCcCcCCCCcEEEeccCCcceEEeccCCCCCCCCCCCHH
Confidence            999998653     4675 88999999999999985 58999999983

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=1.6e-47  Score=379.07  Aligned_cols=229  Identities=25%  Similarity=0.430  Sum_probs=202.0

Q ss_pred             CHHHHH-cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC
Q 019513           84 GVEGQS-NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST  162 (340)
Q Consensus        84 G~~~q~-~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~  162 (340)
                      |.+.++ .|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++|||++|+++++++|+++||+
T Consensus        30 g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~  109 (434)
T 1tt5_B           30 STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN  109 (434)
T ss_dssp             CSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC
Confidence            455554 5699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc------------CCcEEEEeecCceeEEEEEeCCC
Q 019513          163 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL------------GKPLVSGAALGLEGQLTVYNYNG  230 (340)
Q Consensus       163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~------------~~p~i~~~~~g~~G~i~v~~~~~  230 (340)
                      ++|+++...++..+ .++++++|+||+|+|++++|++||++|+..            ++|+|++++.|+.|++.++.|+.
T Consensus       110 v~v~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~~  188 (434)
T 1tt5_B          110 CNVVPHFNKIQDFN-DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGM  188 (434)
T ss_dssp             CCCEEEESCGGGBC-HHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEEETTEEEEEEECTTT
T ss_pred             CEEEEEecccchhh-HHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEeccccceeEEEEECCCC
Confidence            99999998888766 588899999999999999999999999884            99999999999999999999999


Q ss_pred             CCceeecCCCCCCCccccccc----------------------------------------------------CCCc---
Q 019513          231 GPCYRCLFPTPPPTTACQRCA----------------------------------------------------DSGV---  255 (340)
Q Consensus       231 ~pC~~C~~~~~~~~~~~~~c~----------------------------------------------------~~g~---  255 (340)
                      +|||+|.++..|+....+.|.                                                    ..|+   
T Consensus       189 t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~~~~~~~~~~~~d~d~~~~~~~v~~~a~~~~~~~gi~~~  268 (434)
T 1tt5_B          189 TACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGV  268 (434)
T ss_dssp             SCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTCTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHcCCCcc
Confidence            999999987655444333331                                                    1232   


Q ss_pred             ---------------cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc-EEEEEecCCCCCCCccCCCC
Q 019513          256 ---------------LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACGENS  315 (340)
Q Consensus       256 ---------------~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~-~~~~~l~~~~~~C~~Cg~~~  315 (340)
                                     ++|+++++|+++|+|++|+++|.++++.+ ++.||+..+. ++++++. |+|+||+||..+
T Consensus       269 ~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l~~-~l~~d~~~~~~~~~~~~~-~~~~C~vC~~~~  342 (434)
T 1tt5_B          269 TYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNN-YLVFNDVDGLYTYTFEAE-RKENCPACSQLP  342 (434)
T ss_dssp             CHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCCCS-EEEEECSBSCEEEEECCC-CCTTCTTTCSSC
T ss_pred             CHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCcccCc-eEEEEcCCCceeEEEecc-CCCCCCccCCCC
Confidence                           35788999999999999999999998876 6789999877 5677776 899999999855

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=100.00  E-value=4.9e-47  Score=384.69  Aligned_cols=246  Identities=22%  Similarity=0.268  Sum_probs=212.2

Q ss_pred             CCCHHHHhhhhhhccCC-----CCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCcccccc
Q 019513           65 GLSPDMIYRYSRHLLLP-----SFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIH  139 (340)
Q Consensus        65 ~l~~~e~~ry~Rq~~l~-----~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~  139 (340)
                      .|++.+..+|+||+.+.     -++..+|++|++++|+|||+||+||++|++|+++|||+|+|||+|.|+.+||+||++|
T Consensus       294 ~l~~~~la~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~  373 (598)
T 3vh1_A          294 LLDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALY  373 (598)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTC
T ss_pred             ccCHHHHHHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCccccccccccccc
Confidence            38899999999988751     1344568999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCcccHHHHHHHHHhhCCCceEEEecccC---------------CcccHHhhcccCcEEEEcCCChhhHHHHHHHH
Q 019513          140 TEPYIGQSKVKSAAATCRSINSTVHIIEHREAL---------------RTSNALEILSQYEIVVDATDNAPSRYMISDCC  204 (340)
Q Consensus       140 ~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~---------------~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~  204 (340)
                      +.+|||++||++++++|+++||+++|+++...+               +.++..++++++|+||+|+|++++|++++++|
T Consensus       374 ~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c  453 (598)
T 3vh1_A          374 NFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLS  453 (598)
T ss_dssp             CSTTCSSBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHH
T ss_pred             chhhcCcHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence            999999999999999999999999999998764               23556788899999999999999999999999


Q ss_pred             HHcCCcEEEEeecCceeEEEEEeC-------CCCCceeecCCCCCCCccc-----ccccCCCccccHHHHHHHHHHHHHH
Q 019513          205 VVLGKPLVSGAALGLEGQLTVYNY-------NGGPCYRCLFPTPPPTTAC-----QRCADSGVLGVVPGIIGCLQALEAI  272 (340)
Q Consensus       205 ~~~~~p~i~~~~~g~~G~i~v~~~-------~~~pC~~C~~~~~~~~~~~-----~~c~~~g~~gpv~~i~g~l~A~eai  272 (340)
                      +.+++|+|++ +.|+.|++.++.+       +.+|||+|+++..|.....     +.|   ++++|+++++|+++|.|+|
T Consensus       454 ~~~~~plI~a-a~G~~Gqv~v~~g~~p~~~~~~~~Cy~Cl~~~~p~~~~~~~tld~~C---~Vl~p~vgvigslqA~Eal  529 (598)
T 3vh1_A          454 NIENKTVINA-ALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMC---TVTRPGVAMMASSLAVELM  529 (598)
T ss_dssp             HHTTCEEEEE-EECSSEEEEEEEC--------CBCCTTTSCSSCSSSCTTTTTTTBSC---CCSCTHHHHHHHHHHHHHH
T ss_pred             HhcCCCEEEE-EECCccEEEEEccCCCccCCCCCCceeecCccCCCccccccccCCCC---CccCcHHHHHHHHHHHHHH
Confidence            9999999996 6899999988752       3579999998776543211     234   5899999999999999999


Q ss_pred             HHHhcCCC-----CCCCeE-EEEEcCCCcEEEEEecC-CCCCCCccCCC
Q 019513          273 KVASAVGE-----PLSGRM-LLFDALSARIRIVKIRG-RSSQCEACGEN  314 (340)
Q Consensus       273 k~l~g~~~-----~~~~~~-~~fd~~~~~~~~~~l~~-~~~~C~~Cg~~  314 (340)
                      |+|+|.++     +..|.+ ..+++....|+.++++. |+|+|++||..
T Consensus       530 k~Llg~~~ap~~~~~~g~l~~~l~g~l~~f~~~~l~~~r~~~C~~Cg~~  578 (598)
T 3vh1_A          530 TSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPK  578 (598)
T ss_dssp             HHHHSCCCSSSSEETTEECCSEEEEETTTTEEEEECCBCCTTCTTTSHH
T ss_pred             HHHhCCCcccccccccccccceeecccccceeEeccCCCCCCCCCCchH
Confidence            99999987     444544 46788777888888763 88999999964

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=5.7e-45  Score=351.93  Aligned_cols=233  Identities=18%  Similarity=0.280  Sum_probs=203.9

Q ss_pred             CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513           65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI  144 (340)
Q Consensus        65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di  144 (340)
                      .||.++.+||+||+++  ||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||+|+.++||
T Consensus        10 ~l~~~~~~rY~Rq~~l--~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~di   87 (346)
T 1y8q_A           10 GISEEEAAQYDRQIRL--WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSV   87 (346)
T ss_dssp             CCCHHHHHHHHHHHHH--HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCT
T ss_pred             cCCHHHHHHHHHHHHh--hCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccC
Confidence            6999999999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513          145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT  224 (340)
Q Consensus       145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~  224 (340)
                      |++|+++++++|+++||+++|.++...+++ +..++++++|+||+|+|+..+|+.|+++|+++++|||++++.|+.|+++
T Consensus        88 G~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v~  166 (346)
T 1y8q_A           88 GRNRAEASLERAQNLNPMVDVKVDTEDIEK-KPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTF  166 (346)
T ss_dssp             TSBHHHHHHHHHHHTCTTSEEEEECSCGGG-CCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEEE
T ss_pred             cCCHHHHHHHHHHhHCCCeEEEEEecccCc-chHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccEEEEE
Confidence            999999999999999999999999988765 4577889999999999999999999999999999999999999999998


Q ss_pred             EEeCCCCCceeecCC-----------------------------------------------------------------
Q 019513          225 VYNYNGGPCYRCLFP-----------------------------------------------------------------  239 (340)
Q Consensus       225 v~~~~~~pC~~C~~~-----------------------------------------------------------------  239 (340)
                      +..+ ..+|+.|...                                                                 
T Consensus       167 ~d~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~a  245 (346)
T 1y8q_A          167 ANLG-EHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQV  245 (346)
T ss_dssp             EECS-EEEEEEECC-----------------------CCCEEEEEEECCCHHHHTSCCSCSHHHHHHHTTSCTHHHHHHH
T ss_pred             EecC-CCCEEEcCCCCcCCCcccccCCCCCcccccCCceEEEeceeeccCHHHHhcCCchhhhhhhhcccccHHHHHHHH
Confidence            7542 3444444211                                                                 


Q ss_pred             ---------CCCCCccc------------ccc----------------cCCCccccHHHHHHHHHHHHHHHHHhcCCCCC
Q 019513          240 ---------TPPPTTAC------------QRC----------------ADSGVLGVVPGIIGCLQALEAIKVASAVGEPL  282 (340)
Q Consensus       240 ---------~~~~~~~~------------~~c----------------~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~  282 (340)
                               ..|.+...            ..+                .-.|.++|+++++|+++|+|+||+++|...|+
T Consensus       246 l~~f~~~~~~~P~~~~~~~d~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~AiiGGi~aQEviK~it~k~~Pl  325 (346)
T 1y8q_A          246 LLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPH  325 (346)
T ss_dssp             HHHHHHHSSSCCCGGGHHHHHHHHHHHHHHHHHTTTCCGGGSCGGGGGSSCSBCHHHHHHHHHHHHHHHHHHHHTBSCCC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHhcCCccHHHHHHHHHHHHHHHHHhcCCCccc
Confidence                     11100000            000                01577899999999999999999999999999


Q ss_pred             CCeEEEEEcCCCcEEEEEec
Q 019513          283 SGRMLLFDALSARIRIVKIR  302 (340)
Q Consensus       283 ~~~~~~fd~~~~~~~~~~l~  302 (340)
                      .| +++||+.+..+..+++.
T Consensus       326 ~n-~~~fD~~~~~~~~~~l~  344 (346)
T 1y8q_A          326 NN-FFFFDGMKGNGIVECLG  344 (346)
T ss_dssp             CS-EEEEETTTTEEEEECCC
T ss_pred             cc-EEEEEccccceeEEecC
Confidence            77 99999999999888875

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=1.6e-44  Score=383.21  Aligned_cols=230  Identities=25%  Similarity=0.422  Sum_probs=206.2

Q ss_pred             CCHHHHHcc-cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC
Q 019513           83 FGVEGQSNL-LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS  161 (340)
Q Consensus        83 ~G~~~q~~L-~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp  161 (340)
                      +|.++|+++ ++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+.+|||++|+++++++|+++||
T Consensus       400 ~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np  479 (805)
T 2nvu_B          400 PSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP  479 (805)
T ss_dssp             CCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHCC
Confidence            699999987 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc------------CCcEEEEeecCceeEEEEEeCC
Q 019513          162 TVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL------------GKPLVSGAALGLEGQLTVYNYN  229 (340)
Q Consensus       162 ~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~------------~~p~i~~~~~g~~G~i~v~~~~  229 (340)
                      +++|+++...+++.+ .++++++|+||+|+|++++|++||++|+..            ++|+|++++.|+.|++.++.|+
T Consensus       480 ~~~v~~~~~~~~~~~-~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~G~~~~~~p~  558 (805)
T 2nvu_B          480 NCNVVPHFNKIQDFN-DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPG  558 (805)
T ss_dssp             TCEEEEEESCGGGSC-HHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEECTT
T ss_pred             CCEEEEEeccccccH-HHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCceeEEEECCC
Confidence            999999999988766 588899999999999999999999999884            9999999999999999999999


Q ss_pred             CCCceeecCCCCCCCccccccc----------------------------------------------------CCCc--
Q 019513          230 GGPCYRCLFPTPPPTTACQRCA----------------------------------------------------DSGV--  255 (340)
Q Consensus       230 ~~pC~~C~~~~~~~~~~~~~c~----------------------------------------------------~~g~--  255 (340)
                      .++||+|.++..|+....+.|.                                                    ..|+  
T Consensus       559 ~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~gi~~  638 (805)
T 2nvu_B          559 MTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG  638 (805)
T ss_dssp             TSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHHCTTSTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhcccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999987555443333221                                                    2233  


Q ss_pred             ----------------cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc-EEEEEecCCCCCCCccCCCC
Q 019513          256 ----------------LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACGENS  315 (340)
Q Consensus       256 ----------------~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~-~~~~~l~~~~~~C~~Cg~~~  315 (340)
                                      ++|+++++|+++|+|+||+++|.++++.+ ++.||+..+. ++++++. |+|+|++||..+
T Consensus       639 ~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~C~~C~~~~  713 (805)
T 2nvu_B          639 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNN-YLVFNDVDGLYTYTFEAE-RKENCPACSQLP  713 (805)
T ss_dssp             CCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCS-EEEEECSBSCEEEEECCC-CCTTCTTTSCCC
T ss_pred             cCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCc-eEEecCCCCcccccccCC-CCCCCCeeCcee
Confidence                            36788999999999999999999998877 6789999877 5677776 899999999855

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=1e-43  Score=359.95  Aligned_cols=207  Identities=20%  Similarity=0.214  Sum_probs=189.6

Q ss_pred             HHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccH
Q 019513           70 MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKV  149 (340)
Q Consensus        70 e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka  149 (340)
                      +.+||+||+++  ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||+|++++|||++||
T Consensus        11 ~~~rY~Rqi~l--~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka   88 (531)
T 1tt5_A           11 KEQKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRA   88 (531)
T ss_dssp             HHHHTHHHHHH--HHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHH
T ss_pred             HHHHhhHHHHh--cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHH
Confidence            45899999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEecccCCc--ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEe
Q 019513          150 KSAAATCRSINSTVHIIEHREALRT--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN  227 (340)
Q Consensus       150 ~~a~~~L~~lnp~v~i~~~~~~~~~--~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~  227 (340)
                      ++++++|+++||+++|.++...++.  ++..+++++||+||+|+|+..+|+.|+++|+.+++|+|++++.|+.|+++++.
T Consensus        89 ~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~~~  168 (531)
T 1tt5_A           89 EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIII  168 (531)
T ss_dssp             HHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCCeEEEEEEc
Confidence            9999999999999999999887764  45567889999999999999999999999999999999999999999999876


Q ss_pred             CC----------CCCceeecCCCCCCCccccccc----CCCccccHHHHHHHHHHHHHHHHHhcC
Q 019513          228 YN----------GGPCYRCLFPTPPPTTACQRCA----DSGVLGVVPGIIGCLQALEAIKVASAV  278 (340)
Q Consensus       228 ~~----------~~pC~~C~~~~~~~~~~~~~c~----~~g~~gpv~~i~g~l~A~eaik~l~g~  278 (340)
                      |+          .++||+|++|.|+.+..+.+|.    +.|+++++|++++.++|+|++|.+++.
T Consensus       169 p~~~~~d~~~~~~~~~lr~~~p~P~~~~~~~~~~~~~~~~~~~~~~p~vv~~~~ale~~k~~~~g  233 (531)
T 1tt5_A          169 KEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNG  233 (531)
T ss_dssp             SCEEESCCCCSSCCCCCCSSSCCHHHHHHHHTCC-------CGGGSCHHHHHHHHHHHHTTTTCC
T ss_pred             CCceeccCCCCCCCCcccccCCCCCchhhhhccCcccccCCCcCCchHHHHHHHHHHHHHHhcCC
Confidence            52          4789999999988777777774    579999999999999999999988743

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=2.1e-38  Score=324.73  Aligned_cols=198  Identities=21%  Similarity=0.337  Sum_probs=178.2

Q ss_pred             hccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHH
Q 019513           77 HLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATC  156 (340)
Q Consensus        77 q~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L  156 (340)
                      |+++  ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+.+|||++|+++++++|
T Consensus         3 qi~l--~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L   80 (640)
T 1y8q_B            3 LSRG--LPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESV   80 (640)
T ss_dssp             ---C--CCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHH
T ss_pred             hhhh--cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHH
Confidence            6677  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCceEEEecccCCccc-HHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCcee
Q 019513          157 RSINSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYR  235 (340)
Q Consensus       157 ~~lnp~v~i~~~~~~~~~~~-~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~  235 (340)
                      +++||+++|.++...+++.+ ..++++++|+||+|+|++.+|++|+++|+.+++|+|++++.|+.|++.++.|+.++||+
T Consensus        81 ~~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p~~t~Cy~  160 (640)
T 1y8q_B           81 LQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYE  160 (640)
T ss_dssp             HTTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTSCCTT
T ss_pred             HHHCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecccceEEEECCCCCCCcc
Confidence            99999999999999887654 45788999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCC
Q 019513          236 CLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGE  280 (340)
Q Consensus       236 C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~  280 (340)
                      |.+  .|++...+.|.-.+...+....+.  .|.++++.+.|...
T Consensus       161 C~~--~p~~~~~p~Cti~~~p~~~~hci~--~a~~~f~~lf~~~~  201 (640)
T 1y8q_B          161 CHP--KPTQRTFPGATIRNTPSEPIHCIV--WAKYLFNQLFGEED  201 (640)
T ss_dssp             SSC--CCCCCCCCTTTTTSCCCSHHHHHH--HHHHHHHHHHSCCC
T ss_pred             cCC--CCCCcccceeeecCCCCchHHHHH--HHHHHHHHHhCCcc
Confidence            975  334556788988887766555554  67899999998753

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=333.87  Aligned_cols=177  Identities=24%  Similarity=0.439  Sum_probs=166.0

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCccccccCCCccC
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIG  145 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~Rq~l~~~~diG  145 (340)
                      .+||+||+++  ||.++|++|++++|+|||+||+||+++++|+++||     |+|+|+|.|.|+.|||+||++|+.+|||
T Consensus       405 ~~Ry~rq~~l--~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG  482 (1015)
T 3cmm_A          405 NSRYDNQIAV--FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVG  482 (1015)
T ss_dssp             SSTTHHHHHH--HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTT
T ss_pred             hhhhhhHHHh--cCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCC
Confidence            4799999999  99999999999999999999999999999999999     9999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhhCCCc--eEEEecccCCcccH----HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          146 QSKVKSAAATCRSINSTV--HIIEHREALRTSNA----LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       146 ~~Ka~~a~~~L~~lnp~v--~i~~~~~~~~~~~~----~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ++|+++|+++++++||++  +|+++...+++++.    .++++++|+||+|+|++++|++++++|+.+++|||++++.|+
T Consensus       483 ~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~  562 (1015)
T 3cmm_A          483 KNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGT  562 (1015)
T ss_dssp             SBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CHHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCCcc
Confidence            999999999999999999  99999999987664    577899999999999999999999999999999999999999


Q ss_pred             eeEEEEEeCCCCCceeecCCCCCCCccccccc
Q 019513          220 EGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA  251 (340)
Q Consensus       220 ~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~  251 (340)
                      .|++.++.|+.++||+|. +. |+....+.|.
T Consensus       563 ~G~v~v~~p~~t~cy~c~-~d-p~~~~~P~Ct  592 (1015)
T 3cmm_A          563 KGNTQVIIPRLTESYSSS-RD-PPEKSIPLCT  592 (1015)
T ss_dssp             EEEEEEECTTTBCCGGGS-CC-CCCCCCCHHH
T ss_pred             ccceEEEeCCCCCccCCC-CC-CCCCCCCccc
Confidence            999999999999999998 33 3445566775

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-35  Score=313.41  Aligned_cols=163  Identities=26%  Similarity=0.361  Sum_probs=154.2

Q ss_pred             HHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccH
Q 019513           70 MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKV  149 (340)
Q Consensus        70 e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka  149 (340)
                      +.+||+||+++  ||.++|++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|||++||
T Consensus         6 d~~rY~Rqi~l--~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka   83 (1015)
T 3cmm_A            6 DESLYSRQLYV--LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRG   83 (1015)
T ss_dssp             CHHHHHHHHHH--SCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHH
T ss_pred             hhHhccchHhh--cCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHH
Confidence            34699999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513          150 KSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY  228 (340)
Q Consensus       150 ~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~  228 (340)
                      ++++++|+++||+++|.++...+++    +++++||+||+|+| +..+|+.|+++|+.+++|+|++++.|+.|++++   
T Consensus        84 ~a~~~~L~~lNP~v~v~~~~~~l~~----~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~---  156 (1015)
T 3cmm_A           84 DVTRAKLAELNAYVPVNVLDSLDDV----TQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFV---  156 (1015)
T ss_dssp             HHHHHHHTTSCTTSCEEECCCCCCS----TTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEE---
T ss_pred             HHHHHHHHHHCCCCeEEEecCCCCH----HHHhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEe---
Confidence            9999999999999999999988864    47889999999999 999999999999999999999999999999876   


Q ss_pred             CCCCceeecCCCC
Q 019513          229 NGGPCYRCLFPTP  241 (340)
Q Consensus       229 ~~~pC~~C~~~~~  241 (340)
                      ..++||+|+++.+
T Consensus       157 d~~~~~~c~~~~~  169 (1015)
T 3cmm_A          157 DLGDEFTVLDPTG  169 (1015)
T ss_dssp             ECCSCEEESBSSC
T ss_pred             cCCCceEEeeCCC
Confidence            3478999998764

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.17  E-value=3.9e-06  Score=78.21  Aligned_cols=80  Identities=24%  Similarity=0.364  Sum_probs=65.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||+|..++..|+..|+++|+|++.+                   ..|++.+++.+...+|.+.+..+.
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~i~~~~  184 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVD  184 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS-------------------HHHHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEcC
Confidence            4778999999999999999999999999999998754                   247888999998887777766544


Q ss_pred             ccCCcccHHhhcccCcEEEEcCC
Q 019513          170 EALRTSNALEILSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD  192 (340)
                          .++..+.+.++|+||+||-
T Consensus       185 ----~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          185 ----ARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             ----STTHHHHHHHSSEEEECSS
T ss_pred             ----HHHHHHHHhcCCEEEECCC
Confidence                2344566788999999985

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.96  E-value=6.1e-05  Score=59.08  Aligned_cols=94  Identities=17%  Similarity=0.216  Sum_probs=65.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ..+|+|+|+|++|..++..|...|..++.++|.+.                   .|.+.+    .  .+.+.+.  ...+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~-------------------~~~~~~----~--~~~~~~~--~~d~   57 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL-------------------AALAVL----N--RMGVATK--QVDA   57 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH-------------------HHHHHH----H--TTTCEEE--ECCT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH-------------------HHHHHH----H--hCCCcEE--EecC
Confidence            46899999999999999999999977788887532                   122222    1  2334432  2333


Q ss_pred             C-cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          173 R-TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       173 ~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      . .+...+.++++|+||.|+.. .....+.+.|.+.+++++..
T Consensus        58 ~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           58 KDEAGLAKALGGFDAVISAAPF-FLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             TCHHHHHHHTTTCSEEEECSCG-GGHHHHHHHHHHTTCEEECC
T ss_pred             CCHHHHHHHHcCCCEEEECCCc-hhhHHHHHHHHHhCCCEEEe
Confidence            3 24456677899999999953 44456777889999988863

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.88  E-value=2.8e-05  Score=69.98  Aligned_cols=93  Identities=16%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|++++|+|||+|.+|...++.|..+|. ++++|+++.-                     ..+.+...+  ..++  ..
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~---------------------~~l~~l~~~--~~i~--~i   80 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVS---------------------AEINEWEAK--GQLR--VK   80 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCC---------------------HHHHHHHHT--TSCE--EE
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCC---------------------HHHHHHHHc--CCcE--EE
Confidence            46899999999999999999999999995 7999986421                     012211111  2333  33


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                      ...+.+    +.+.++|+||.|||+......|...|. .++|+-
T Consensus        81 ~~~~~~----~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~VN  119 (223)
T 3dfz_A           81 RKKVGE----EDLLNVFFIVVATNDQAVNKFVKQHIK-NDQLVN  119 (223)
T ss_dssp             CSCCCG----GGSSSCSEEEECCCCTHHHHHHHHHSC-TTCEEE
T ss_pred             ECCCCH----hHhCCCCEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence            333432    346789999999999999888999888 888743

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.83  E-value=0.00024  Score=57.53  Aligned_cols=95  Identities=19%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++.++|+|+|+|.+|..+++.|...|. ++.++|.+.-....                       +.+.  ...+  +.
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~-----------------------~~~~--~~~~--~~   54 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNA-----------------------YASY--ATHA--VI   54 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHT-----------------------TTTT--CSEE--EE
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-----------------------HHHh--CCEE--EE
Confidence            4567889999999999999999999996 58888865311111                       1111  1111  11


Q ss_pred             ccCC-cccHHhh-cccCcEEEEcCCCh-hhHHHHHHHHHHcCCcEE
Q 019513          170 EALR-TSNALEI-LSQYEIVVDATDNA-PSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       170 ~~~~-~~~~~~~-l~~~DlVi~~tD~~-~~r~~i~~~~~~~~~p~i  212 (340)
                      ...+ .+...+. +.++|+||.++.+. .....+...++..+.+.+
T Consensus        55 ~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~i  100 (144)
T 2hmt_A           55 ANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNI  100 (144)
T ss_dssp             CCTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEE
T ss_pred             eCCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHHcCCCeE
Confidence            1222 1222222 57899999999875 555566777777765543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.78  E-value=7.7e-05  Score=70.48  Aligned_cols=84  Identities=14%  Similarity=0.187  Sum_probs=61.9

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||+|..++..|+..|+.+|+|++.+.                --..|++.+++.+....+ +.+....
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~----------------~~~~~a~~la~~~~~~~~-~~~~~~~  213 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD----------------DFYANAEKTVEKINSKTD-CKAQLFD  213 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------TTHHHHHHHHHHHHHHSS-CEEEEEE
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC----------------chHHHHHHHHHHhhhhcC-CceEEec
Confidence            46789999999999999999999999999999987531                002478888888877654 4444332


Q ss_pred             ccCCc-ccHHhhcccCcEEEEcCC
Q 019513          170 EALRT-SNALEILSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~-~~~~~~l~~~DlVi~~tD  192 (340)
                        +.. +...+.+.++|+||.||.
T Consensus       214 --~~~~~~l~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          214 --IEDHEQLRKEIAESVIFTNATG  235 (315)
T ss_dssp             --TTCHHHHHHHHHTCSEEEECSS
T ss_pred             --cchHHHHHhhhcCCCEEEECcc
Confidence              221 234456778999999985

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.74  E-value=0.00037  Score=58.21  Aligned_cols=99  Identities=15%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +++.+.+|+|+|+|.+|..++..|...|. +++++|.+.-....+...                        ....+  +
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~------------------------~g~~~--~   67 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSE------------------------FSGFT--V   67 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTT------------------------CCSEE--E
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhc------------------------CCCcE--E
Confidence            45677899999999999999999999996 799998764222111100                        01111  1


Q ss_pred             cccCC-cccHHhh-cccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEEE
Q 019513          169 REALR-TSNALEI-LSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSG  214 (340)
Q Consensus       169 ~~~~~-~~~~~~~-l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~~  214 (340)
                      ..... .+...+. +.++|+||.|+.+......+...++. .+...+.+
T Consensus        68 ~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           68 VGDAAEFETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             ESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             EecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            11111 1111122 56799999999998877777777776 55544433

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.69  E-value=0.00051  Score=56.10  Aligned_cols=95  Identities=14%  Similarity=0.057  Sum_probs=63.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +..+|+|+|+|.+|..+++.|...|. +++++|.|.                   .+++.    +.+.  ...  .+...
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~-------------------~~~~~----~~~~--~~~--~~~gd   56 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK-------------------EKIEL----LEDE--GFD--AVIAD   56 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHH----HHHT--TCE--EEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH-------------------HHHHH----HHHC--CCc--EEECC
Confidence            45789999999999999999999996 688888642                   12222    2222  222  23333


Q ss_pred             CCcccHH-h-hcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          172 LRTSNAL-E-ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       172 ~~~~~~~-~-~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      .+..... + .+.++|+||.++++......+...++..+.+.|.+
T Consensus        57 ~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           57 PTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             TTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEE
T ss_pred             CCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEE
Confidence            3332222 2 24689999999998888777777887776554433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.64  E-value=0.00017  Score=69.12  Aligned_cols=93  Identities=14%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++.||+|+|+|.+|+.++++|+..  ..++++|.+.                   .+       +.++.+.+..  ...+
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~~-------------------~~-------~~~~~~~~~~--~~~d   64 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNN-------------------EN-------LEKVKEFATP--LKVD   64 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCH-------------------HH-------HHHHTTTSEE--EECC
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcCH-------------------HH-------HHHHhccCCc--EEEe
Confidence            345799999999999999999764  4677766321                   12       2233333332  2223


Q ss_pred             CC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          172 LR-TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       172 ~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      ++ .+...++++++|+||.|+... ....+.+.|.+.|+.+++.+
T Consensus        65 ~~d~~~l~~~~~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           65 ASNFDKLVEVMKEFELVIGALPGF-LGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCGG-GHHHHHHHHHHHTCEEEECC
T ss_pred             cCCHHHHHHHHhCCCEEEEecCCc-ccchHHHHHHhcCcceEeee
Confidence            33 345667789999999998754 45678899999999999854

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.56  E-value=0.00026  Score=66.78  Aligned_cols=85  Identities=14%  Similarity=0.146  Sum_probs=60.2

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||.|..++..|+..|+.+|+|++.+.                -...|++.+++.+....+ ..+..+.
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~----------------~~~~~a~~la~~~~~~~~-~~v~~~~  207 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD----------------DFFEKAVAFAKRVNENTD-CVVTVTD  207 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------THHHHHHHHHHHHHHHSS-CEEEEEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC----------------chHHHHHHHHHHhhhccC-cceEEec
Confidence            36789999999999999999999999999999987431                002467788887776543 3333332


Q ss_pred             ccCCc-ccHHhhcccCcEEEEcCCC
Q 019513          170 EALRT-SNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~-~~~~~~l~~~DlVi~~tD~  193 (340)
                      .  .. +...+.+.++|+||.||..
T Consensus       208 ~--~~l~~~~~~l~~~DiIINaTp~  230 (312)
T 3t4e_A          208 L--ADQHAFTEALASADILTNGTKV  230 (312)
T ss_dssp             T--TCHHHHHHHHHHCSEEEECSST
T ss_pred             h--HhhhhhHhhccCceEEEECCcC
Confidence            1  11 0123456789999999864

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.48  E-value=0.00069  Score=65.95  Aligned_cols=100  Identities=19%  Similarity=0.298  Sum_probs=71.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcC-C-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGAGGLGSPALLYLAACG-V-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aG-v-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++|+|+|+|++|..++..|+..| + .++.++|.+.                   .|++.+++.+....+ ..+.....+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~-------------------~~~~~la~~l~~~~~-~~~~~~~~D   61 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTL-------------------SKCQEIAQSIKAKGY-GEIDITTVD   61 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCH-------------------HHHHHHHHHHHHTTC-CCCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCH-------------------HHHHHHHHHhhhhcC-CceEEEEec
Confidence            47999999999999999999988 3 6899887542                   466677776665431 123333344


Q ss_pred             CC-cccHHhhccc--CcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          172 LR-TSNALEILSQ--YEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       172 ~~-~~~~~~~l~~--~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      ++ .+...+++++  .|+||.|+... ....+.+.|.+.++.+++.
T Consensus        62 ~~d~~~l~~~l~~~~~DvVin~ag~~-~~~~v~~a~l~~g~~vvD~  106 (405)
T 4ina_A           62 ADSIEELVALINEVKPQIVLNIALPY-QDLTIMEACLRTGVPYLDT  106 (405)
T ss_dssp             TTCHHHHHHHHHHHCCSEEEECSCGG-GHHHHHHHHHHHTCCEEES
T ss_pred             CCCHHHHHHHHHhhCCCEEEECCCcc-cChHHHHHHHHhCCCEEEe
Confidence            44 3455666766  89999998753 3556778899999999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.46  E-value=0.0015  Score=54.12  Aligned_cols=92  Identities=12%  Similarity=0.146  Sum_probs=61.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+.+|+|+|+|.+|..+++.|...|. .++++|.|.-                  .+++.+.+.   ....+.+  +...
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~------------------~~~~~~~~~---~~~~~~~--i~gd   57 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE------------------DDIKQLEQR---LGDNADV--IPGD   57 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH------------------HHHHHHHHH---HCTTCEE--EESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCh------------------HHHHHHHHh---hcCCCeE--EEcC
Confidence            46789999999999999999999995 6888886420                  112222211   1223333  2333


Q ss_pred             CCc-ccHHh-hcccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513          172 LRT-SNALE-ILSQYEIVVDATDNAPSRYMISDCCVVL  207 (340)
Q Consensus       172 ~~~-~~~~~-~l~~~DlVi~~tD~~~~r~~i~~~~~~~  207 (340)
                      .+. +...+ -+.++|+||.++++......+...++..
T Consensus        58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~   95 (153)
T 1id1_A           58 SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHH
Confidence            332 22233 3688999999999988777777778776

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.42  E-value=0.0011  Score=58.70  Aligned_cols=102  Identities=15%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             HHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc-
Q 019513           86 EGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV-  163 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v-  163 (340)
                      ..+..|++++|+|.|+ |++|..+++.|+..|. ++.+++.+.                   .+.+.+    ..  +.+ 
T Consensus        14 ~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~-------------------~~~~~~----~~--~~~~   67 (236)
T 3e8x_A           14 RENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE-------------------EQGPEL----RE--RGAS   67 (236)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGHHHH----HH--TTCS
T ss_pred             ccccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh-------------------HHHHHH----Hh--CCCc
Confidence            4456788999999998 8899999999999995 677776432                   122221    21  133 


Q ss_pred             eEEEecccCCcccHHhhcccCcEEEEcCCChh-------------hHHHHHHHHHHcCC-cEEEEee
Q 019513          164 HIIEHREALRTSNALEILSQYEIVVDATDNAP-------------SRYMISDCCVVLGK-PLVSGAA  216 (340)
Q Consensus       164 ~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~-------------~r~~i~~~~~~~~~-p~i~~~~  216 (340)
                      +  .+..+++ +...+.+.+.|+||.+.....             .-..+.++|.+.+. .+|..+.
T Consensus        68 ~--~~~~Dl~-~~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  131 (236)
T 3e8x_A           68 D--IVVANLE-EDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS  131 (236)
T ss_dssp             E--EEECCTT-SCCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             e--EEEcccH-HHHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence            3  3344444 556677889999999876421             12335566766664 3555554

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.41  E-value=0.00027  Score=65.43  Aligned_cols=112  Identities=21%  Similarity=0.265  Sum_probs=67.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCcc--ccccCCCccCcccHHHHHHHHHhh-CC----
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--QVIHTEPYIGQSKVKSAAATCRSI-NS----  161 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~R--q~l~~~~diG~~Ka~~a~~~L~~l-np----  161 (340)
                      ..|++++|+|||+|.+|...+..|...|. ++++||.+.-+.  +..  +-+..  +-+. ++.  ....+++ ++    
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~--l~~~~~~l~~--~~~~-~~~--~~~~~~~~~~~~~~   80 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKS--IIPKFGKFIQ--NKDQ-PDY--REDAKRFINPNWDP   80 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTT--HHHHHCGGGC----------------CEEECTTCCT
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcc--hhHHHHHHHh--cccc-ccc--cchhhccccccccc
Confidence            35789999999999999999999999994 699999765211  100  00000  0000 000  0000000 00    


Q ss_pred             -CceE-EEecccCCcccHHhhcc------cCcEEEEcCCChhhHHHHHHHHHHc---CCcEE
Q 019513          162 -TVHI-IEHREALRTSNALEILS------QYEIVVDATDNAPSRYMISDCCVVL---GKPLV  212 (340)
Q Consensus       162 -~v~i-~~~~~~~~~~~~~~~l~------~~DlVi~~tD~~~~r~~i~~~~~~~---~~p~i  212 (340)
                       .-.+ ..+...+.+    +.+.      ++|+||.|+++......|...|++.   ++|+-
T Consensus        81 ~~g~i~~~i~~~~~~----~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VN  138 (274)
T 1kyq_A           81 TKNEIYEYIRSDFKD----EYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVN  138 (274)
T ss_dssp             TSCCCSEEECSSCCG----GGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             ccCCeeEEEcCCCCH----HHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEE
Confidence             1122 333333332    2344      8999999999998888899999998   88763

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.36  E-value=0.00038  Score=64.33  Aligned_cols=142  Identities=23%  Similarity=0.254  Sum_probs=81.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||+|..++..|+..|+.+|++++.+.                   .|++.+++.+..  ..+.+..+.
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~-------------------~~a~~la~~~~~--~~~~~~~~~  175 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM-------------------AKALALRNELDH--SRLRISRYE  175 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH-------------------HHHHHHHHHHCC--TTEEEECSG
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHhcc--CCeeEeeHH
Confidence            35788999999999999999999999999999986431                   366666666544  122222111


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCCCCCCCccccc
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQR  249 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~  249 (340)
                            +...  .++|+||.||.....          -..|.+....+          ....-+++..|. |.+......
T Consensus       176 ------~l~~--~~~DivInaTp~gm~----------~~~~~i~~~~l----------~~~~~V~DlvY~-P~~T~ll~~  226 (272)
T 3pwz_A          176 ------ALEG--QSFDIVVNATSASLT----------ADLPPLPADVL----------GEAALAYELAYG-KGLTPFLRL  226 (272)
T ss_dssp             ------GGTT--CCCSEEEECSSGGGG----------TCCCCCCGGGG----------TTCSEEEESSCS-CCSCHHHHH
T ss_pred             ------Hhcc--cCCCEEEECCCCCCC----------CCCCCCCHHHh----------CcCCEEEEeecC-CCCCHHHHH
Confidence                  1111  679999999864321          11122211111          122335565553 222211112


Q ss_pred             ccCCCccccHHHH-HHHHHHHHHHHHHhcCCCC
Q 019513          250 CADSGVLGVVPGI-IGCLQALEAIKVASAVGEP  281 (340)
Q Consensus       250 c~~~g~~gpv~~i-~g~l~A~eaik~l~g~~~~  281 (340)
                      ....|..-.+.|+ +-..||.++.++.+|...+
T Consensus       227 A~~~G~~~~~~Gl~ML~~Qa~~~f~lwtg~~~~  259 (272)
T 3pwz_A          227 AREQGQARLADGVGMLVEQAAEAFAWWRGVRPD  259 (272)
T ss_dssp             HHHHSCCEEECTHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHCCCCEEECCHHHHHHHHHHHHHHHhCCCCC
Confidence            2233322123332 4567889999999998655

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.35  E-value=0.0027  Score=50.99  Aligned_cols=89  Identities=15%  Similarity=0.128  Sum_probs=56.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .+|+|+|+|.+|..++..|...|. +++++|.+.                   .+++    .+.+.. .+.+  +.....
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~-------------------~~~~----~~~~~~-~~~~--~~~d~~   57 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICK----KASAEI-DALV--INGDCT   57 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHH----HHHHHC-SSEE--EESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHH----HHHHhc-CcEE--EEcCCC
Confidence            579999999999999999999994 688888532                   1122    222211 2222  222222


Q ss_pred             c-ccHH-hhcccCcEEEEcCCChhhHHHHHHHHHHcCC
Q 019513          174 T-SNAL-EILSQYEIVVDATDNAPSRYMISDCCVVLGK  209 (340)
Q Consensus       174 ~-~~~~-~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~  209 (340)
                      . +... ..+.++|+||.|+.+......+...+...+.
T Consensus        58 ~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~   95 (140)
T 1lss_A           58 KIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGI   95 (140)
T ss_dssp             SHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHHcCC
Confidence            1 1112 2257899999999887666666667766653

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.33  E-value=0.00052  Score=63.71  Aligned_cols=76  Identities=20%  Similarity=0.331  Sum_probs=55.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||.|..++..|+..|+.+|++++.+.                   .|++.+++.+.... .+.+....
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~-------------------~~a~~la~~~~~~~-~~~~~~~~  182 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF-------------------AKAEQLAELVAAYG-EVKAQAFE  182 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH-------------------HHHHHHHHHHGGGS-CEEEEEGG
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH-------------------HHHHHHHHHhhccC-CeeEeeHH
Confidence            36789999999999999999999999999999987432                   46777777766542 23322211


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                               ++..++|+||.||...
T Consensus       183 ---------~l~~~aDiIInaTp~g  198 (281)
T 3o8q_A          183 ---------QLKQSYDVIINSTSAS  198 (281)
T ss_dssp             ---------GCCSCEEEEEECSCCC
T ss_pred             ---------HhcCCCCEEEEcCcCC
Confidence                     1126799999998653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.30  E-value=0.001  Score=65.89  Aligned_cols=93  Identities=15%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|++++|+|||.|.+|...++.|...|. +++++|.+.-+                     .+. .+.+ ...+  ..+
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~---------------------~~~-~l~~-~~~i--~~~   61 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP---------------------QFT-VWAN-EGML--TLV   61 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH---------------------HHH-HHHT-TTSC--EEE
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH---------------------HHH-HHHh-cCCE--EEE
Confidence            35789999999999999999999999994 79999974211                     111 1111 1123  333


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL  211 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~  211 (340)
                      ...+.+    +.+.++|+||.++|++.....+...|++.++|+
T Consensus        62 ~~~~~~----~~l~~~~lVi~at~~~~~n~~i~~~a~~~~i~v  100 (457)
T 1pjq_A           62 EGPFDE----TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFC  100 (457)
T ss_dssp             ESSCCG----GGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred             ECCCCc----cccCCccEEEEcCCCHHHHHHHHHHHHHcCCEE
Confidence            333333    335689999999999988888999999999986

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.29  E-value=0.00028  Score=65.87  Aligned_cols=78  Identities=24%  Similarity=0.341  Sum_probs=54.5

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+|++|..++..|+..|+.+++++|.+.                   .|++.+++.+....+  .+.   
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~-------------------~ka~~la~~~~~~~~--~~~---  193 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV-------------------EKAERLVREGDERRS--AYF---  193 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH-------------------HHHHHHHHHSCSSSC--CEE---
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHhhhccC--cee---
Confidence            46789999999999999999999999999999987432                   345555444322110  111   


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                         ..++..+.+.++|+||.|+...
T Consensus       194 ---~~~~~~~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          194 ---SLAEAETRLAEYDIIINTTSVG  215 (297)
T ss_dssp             ---CHHHHHHTGGGCSEEEECSCTT
T ss_pred             ---eHHHHHhhhccCCEEEECCCCC
Confidence               1123455678899999998754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.24  E-value=0.0049  Score=52.50  Aligned_cols=91  Identities=16%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+.+.+|+|+|+|.+|..+++.|... |. +++++|.|.                   .|++.    +++.  .+.+.  
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~-------------------~~~~~----~~~~--g~~~~--   87 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE-------------------EAAQQ----HRSE--GRNVI--   87 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH-------------------HHHHH----HHHT--TCCEE--
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH-------------------HHHHH----HHHC--CCCEE--
Confidence            35678999999999999999999999 96 588888643                   12222    2332  22221  


Q ss_pred             cccCCc-ccHHhh--cccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513          169 REALRT-SNALEI--LSQYEIVVDATDNAPSRYMISDCCVVLG  208 (340)
Q Consensus       169 ~~~~~~-~~~~~~--l~~~DlVi~~tD~~~~r~~i~~~~~~~~  208 (340)
                      ....+. +...+.  +.++|+||.++.+...-..+-..++..+
T Consensus        88 ~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~  130 (183)
T 3c85_A           88 SGDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRN  130 (183)
T ss_dssp             ECCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             EcCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHC
Confidence            122222 222333  6789999999998776655556666655

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.12  E-value=0.0044  Score=50.70  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=56.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ..+|+|+|+|.+|..+++.|...|. .++++|.|.                   .+++    .+++.  .+.+  +....
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~----~~~~~--g~~~--i~gd~   58 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR-------------------TRVD----ELRER--GVRA--VLGNA   58 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHH----HHHHT--TCEE--EESCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHH----HHHHc--CCCE--EECCC
Confidence            4589999999999999999999996 688988653                   1222    22332  3332  33333


Q ss_pred             CcccHHh--hcccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513          173 RTSNALE--ILSQYEIVVDATDNAPSRYMISDCCVVL  207 (340)
Q Consensus       173 ~~~~~~~--~l~~~DlVi~~tD~~~~r~~i~~~~~~~  207 (340)
                      +......  -+.++|+||.++++...-..+...+++.
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~   95 (140)
T 3fwz_A           59 ANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAK   95 (140)
T ss_dssp             TSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHH
Confidence            3322222  2578999999999877655555555554

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.06  E-value=0.0023  Score=56.27  Aligned_cols=92  Identities=12%  Similarity=0.057  Sum_probs=60.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|+|+|+|.+|..+++.|...|. .++++|.|.                   .+++.+    .+. ..+.  .+....+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~~l----~~~-~~~~--~i~gd~~~   54 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDR-------------------ELCEEF----AKK-LKAT--IIHGDGSH   54 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHHH----HHH-SSSE--EEESCTTS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHHHH----HHH-cCCe--EEEcCCCC
Confidence            69999999999999999999996 688888643                   122222    221 1232  23333333


Q ss_pred             c-cHHh-hcccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEE
Q 019513          175 S-NALE-ILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVS  213 (340)
Q Consensus       175 ~-~~~~-~l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~  213 (340)
                      . ...+ -+.++|+||.++++......+...++. ++.+.+.
T Consensus        55 ~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii   96 (218)
T 3l4b_C           55 KEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVV   96 (218)
T ss_dssp             HHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEE
T ss_pred             HHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEE
Confidence            2 2222 267899999999998887777777776 4554443

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.04  E-value=0.0026  Score=59.45  Aligned_cols=35  Identities=20%  Similarity=0.118  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ...+|.|||+|.+|..++..|+..|...++++|.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            34689999999999999999999998789999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.04  E-value=0.00038  Score=57.39  Aligned_cols=72  Identities=15%  Similarity=0.280  Sum_probs=51.5

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+++|+|+|+|++|..++..|...|+. ++++|.+.                   .|++.+++.+.     ..+..    
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~-------------------~~~~~~a~~~~-----~~~~~----   70 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNI-------------------DHVRAFAEKYE-----YEYVL----   70 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCH-------------------HHHHHHHHHHT-----CEEEE----
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCH-------------------HHHHHHHHHhC-----CceEe----
Confidence            388999999999999999999999987 99987532                   23444433332     22211    


Q ss_pred             CCcccHHhhcccCcEEEEcCCCh
Q 019513          172 LRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                        .++..+.+.++|+||.|+...
T Consensus        71 --~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           71 --INDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             --CSCHHHHHHTCSEEEECSCCS
T ss_pred             --ecCHHHHhcCCCEEEEeCCCC
Confidence              133456678899999999865

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.97  E-value=0.0014  Score=60.70  Aligned_cols=38  Identities=21%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+++++|+|+|+||.|..++..|+..|+.++++++.+.
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            47889999999999999999999999999999998764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.92  E-value=0.0022  Score=58.55  Aligned_cols=35  Identities=26%  Similarity=0.509  Sum_probs=32.4

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++ +|+|+|+|+.|..++..|+..|+.+|+++|.+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            567 99999999999999999999999999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.85  E-value=0.0029  Score=58.08  Aligned_cols=36  Identities=28%  Similarity=0.466  Sum_probs=32.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|+|+|++|..++..|...|+ +++++|.+
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            4678999999999999999999999998 89988743

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.81  E-value=0.0035  Score=59.25  Aligned_cols=77  Identities=10%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC----CCceEE
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN----STVHII  166 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln----p~v~i~  166 (340)
                      ++..+|.|+|+|.+|+.++..|+..|.+++.|+|-+.                   .|++..+..|...+    ...++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~v~   65 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE-------------------GTPQGKGLDIAESSPVDGFDAKFT   65 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc-------------------hhHHHHHHHHhchhhhcCCCCEEE
Confidence            5677999999999999999999999987899988532                   23443344444432    234444


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCC
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      ...      + .+.++++|+||.+...
T Consensus        66 ~t~------d-~~a~~~aDiVIiaag~   85 (324)
T 3gvi_A           66 GAN------D-YAAIEGADVVIVTAGV   85 (324)
T ss_dssp             EES------S-GGGGTTCSEEEECCSC
T ss_pred             EeC------C-HHHHCCCCEEEEccCc
Confidence            322      1 2457899999998754

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.80  E-value=0.0044  Score=61.42  Aligned_cols=102  Identities=14%  Similarity=0.223  Sum_probs=68.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHc-CC--CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           92 LKSSILVIGAGGLGSPALLYLAAC-GV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~a-Gv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      -..+|+|||+|++|+.++..|++. ++  ..|+++|.+..                ++ +   +.+.+     .+++  .
T Consensus        12 ~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~----------------~~-~---~~~~~-----g~~~--~   64 (480)
T 2ph5_A           12 FKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT----------------KV-D---VAQQY-----GVSF--K   64 (480)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC----------------SC-C---HHHHH-----TCEE--E
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh----------------hh-h---HHhhc-----CCce--e
Confidence            357899999999999999999985 45  58999986542                21 1   11111     2333  3


Q ss_pred             cccCCcccH----HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513          169 REALRTSNA----LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       169 ~~~~~~~~~----~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      ...++.+|.    ..++++.|+||+++... .-..|-++|.+.|+.+|+....-+++
T Consensus        65 ~~~Vdadnv~~~l~aLl~~~DvVIN~s~~~-~~l~Im~acleaGv~YlDTa~E~~~p  120 (480)
T 2ph5_A           65 LQQITPQNYLEVIGSTLEENDFLIDVSIGI-SSLALIILCNQKGALYINAATEPWKE  120 (480)
T ss_dssp             ECCCCTTTHHHHTGGGCCTTCEEEECCSSS-CHHHHHHHHHHHTCEEEESSCCCCCC
T ss_pred             EEeccchhHHHHHHHHhcCCCEEEECCccc-cCHHHHHHHHHcCCCEEECCCCcccc
Confidence            334444433    34566679999877543 44568889999999999977543343

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.0061  Score=60.47  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .++.++|+|+|+|++|..++..|+..|--+++++|.+
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~   56 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT   56 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4566789999999999999999999843478988754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.78  E-value=0.014  Score=49.56  Aligned_cols=98  Identities=14%  Similarity=0.103  Sum_probs=60.6

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +++|+|.|+ |++|..+++.|+..| -++.+++.+.-....+                         ..+.++  .+..+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~-------------------------~~~~~~--~~~~D   54 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSE-------------------------GPRPAH--VVVGD   54 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCSS-------------------------SCCCSE--EEESC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcccc-------------------------cCCceE--EEEec
Confidence            368999998 889999999999999 5788887653211000                         012333  33334


Q ss_pred             CCc-ccHHhhcccCcEEEEcCCChh----------hHHHHHHHHHHcCC-cEEEEeecC
Q 019513          172 LRT-SNALEILSQYEIVVDATDNAP----------SRYMISDCCVVLGK-PLVSGAALG  218 (340)
Q Consensus       172 ~~~-~~~~~~l~~~DlVi~~tD~~~----------~r~~i~~~~~~~~~-p~i~~~~~g  218 (340)
                      ++. +...+.++++|+||.+.....          .-..+-+++.+.+. .+|..+..+
T Consensus        55 ~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~  113 (206)
T 1hdo_A           55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF  113 (206)
T ss_dssp             TTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred             CCCHHHHHHHHcCCCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeee
Confidence            443 445566788999998876432          12335566666665 466655543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.75  E-value=0.0018  Score=60.13  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++++|+|+|+||.|..++..|...|+++|+|++.+
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            678999999999999999999999999999998754

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.72  E-value=0.0046  Score=56.19  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=24.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeC
Q 019513           95 SILVIGA-GGLGSPALLYLAAC-GVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~  125 (340)
                      ||+|+|+ |.+|..+++.+... |..-+.++|.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            6999997 99999999998865 7654556664

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.70  E-value=0.003  Score=61.36  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=53.3

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.+++|+|+|+|++|..+++.|...|+.+++++|.+.                   .|++.+++.+   .  ..  .+  
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~-------------------~ra~~la~~~---g--~~--~~--  216 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY-------------------ERAVELARDL---G--GE--AV--  216 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH-------------------HHHHHHHHHH---T--CE--EC--
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHc---C--Cc--ee--
Confidence            6889999999999999999999999998999987431                   2443333333   2  12  11  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                        ..++..+.+.++|+||+||....
T Consensus       217 --~~~~l~~~l~~aDvVi~at~~~~  239 (404)
T 1gpj_A          217 --RFDELVDHLARSDVVVSATAAPH  239 (404)
T ss_dssp             --CGGGHHHHHHTCSEEEECCSSSS
T ss_pred             --cHHhHHHHhcCCCEEEEccCCCC
Confidence              11345566788999999987543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.69  E-value=0.0038  Score=57.50  Aligned_cols=79  Identities=16%  Similarity=0.219  Sum_probs=55.6

Q ss_pred             ccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++++|+|+| +||+|..++..|+..|.. +.++|.+.                   .|++.+++.+... +.+.+..  
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~-------------------~~~~~l~~~~~~~-~~~~~~~--  173 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKL-------------------DKAQAAADSVNKR-FKVNVTA--  173 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSH-------------------HHHHHHHHHHHHH-HTCCCEE--
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCH-------------------HHHHHHHHHHHhc-CCcEEEE--
Confidence            6788999999 999999999999999976 88887431                   3566666666543 2233222  


Q ss_pred             ccCCc-ccHHhhcccCcEEEEcCC
Q 019513          170 EALRT-SNALEILSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~-~~~~~~l~~~DlVi~~tD  192 (340)
                      ..++. +...+.++.+|+||.++.
T Consensus       174 ~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          174 AETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             EECCSHHHHHHHTTTCSEEEECCC
T ss_pred             ecCCCHHHHHHHHHhCCEEEECCC
Confidence            22332 344566788999999985

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.68  E-value=0.0042  Score=54.58  Aligned_cols=36  Identities=14%  Similarity=0.225  Sum_probs=28.7

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+...+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4667789999999999999999999995 68888754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.67  E-value=0.015  Score=54.09  Aligned_cols=113  Identities=13%  Similarity=0.057  Sum_probs=69.3

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC---ce
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST---VH  164 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~---v~  164 (340)
                      ..++.++|+|.|+ |.+|+.+++.|...|. ++.++|...-                   +.......+....+.   -.
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~   80 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFST-------------------GHQYNLDEVKTLVSTEQWSR   80 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS-------------------CCHHHHHHHHHTSCHHHHTT
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCC-------------------CchhhhhhhhhccccccCCc
Confidence            4567889999996 6799999999999994 5777664321                   111122233332210   23


Q ss_pred             EEEecccCCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          165 IIEHREALRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       165 i~~~~~~~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +..+..+++. +...+.++++|+||.+......                 -..+-++|.+.++ .+|..++.+.+|
T Consensus        81 ~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg  156 (351)
T 3ruf_A           81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYG  156 (351)
T ss_dssp             EEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGT
T ss_pred             eEEEEccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcC
Confidence            4444455553 4456778899999999864210                 1125567777775 678777665544

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.64  E-value=0.013  Score=52.53  Aligned_cols=108  Identities=24%  Similarity=0.262  Sum_probs=61.0

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..+...+|.|||+|.+|+.+|..|+..|. +++++|.+.-.  .+.+.   .....+....+    .+.+..+...    
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~--~~~~~---~~~~~~~~~~~----~~~~~~~~~~----   80 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA--TLARA---EPDAMGAPPFS----QWLPEHPHVH----   80 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH--HHTCC----------CCHH----HHGGGSTTCE----
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh--hhhhh---hhhhhcchhhh----HHHhhcCcee----
Confidence            46788999999999999999999999995 68888765311  00000   00011111111    1111112221    


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHH-H-HHcCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDC-C-VVLGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~-~-~~~~~p~i~~~  215 (340)
                           ..+..+.++++|+||.|+-.......+.+. . ...+..+|+.+
T Consensus        81 -----~~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s  124 (245)
T 3dtt_A           81 -----LAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIA  124 (245)
T ss_dssp             -----EEEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECC
T ss_pred             -----ccCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECC
Confidence                 133456678899999999887766655544 1 22566677755

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.61  E-value=0.0053  Score=55.51  Aligned_cols=93  Identities=13%  Similarity=0.145  Sum_probs=59.2

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +...+|.|||+|.+|+.++..|+..|...+.++|.+.                   .+++.+.+.+   .  +.+  .  
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~-------------------~~~~~~~~~~---g--~~~--~--   59 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE-------------------ESARELAQKV---E--AEY--T--   59 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH-------------------HHHHHHHHHT---T--CEE--E--
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH-------------------HHHHHHHHHc---C--Cce--e--
Confidence            3456899999999999999999999976577776432                   1233222221   1  221  1  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEEe
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSGA  215 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~~  215 (340)
                          .+..+.++++|+||.|+-....+..+.++...  .+..+|+.+
T Consensus        60 ----~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           60 ----TDLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             ----SCGGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             ----CCHHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence                12334567899999999877655555554322  355677643

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.0098  Score=55.70  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+|.|||+|.+|..++..|+..|.-+++++|.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~   57 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLR   57 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999995578888754

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.60  E-value=0.012  Score=51.16  Aligned_cols=97  Identities=20%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ++|+|.|+ |.+|+.+++.|...| -++.+++.+.-....+                          .+  .+..+..++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~--------------------------~~--~~~~~~~Dl   55 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKIE--------------------------NE--HLKVKKADV   55 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCCC--------------------------CT--TEEEECCCT
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchhc--------------------------cC--ceEEEEecC
Confidence            58999996 679999999999999 5788887653221111                          12  234444455


Q ss_pred             C-cccHHhhcccCcEEEEcCCCh-----------hhHHHHHHHHHHcCC-cEEEEeecCc
Q 019513          173 R-TSNALEILSQYEIVVDATDNA-----------PSRYMISDCCVVLGK-PLVSGAALGL  219 (340)
Q Consensus       173 ~-~~~~~~~l~~~DlVi~~tD~~-----------~~r~~i~~~~~~~~~-p~i~~~~~g~  219 (340)
                      + .+...+.++++|+||.+....           ..-..+-++|.+.++ .+|..++.+.
T Consensus        56 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~  115 (227)
T 3dhn_A           56 SSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGS  115 (227)
T ss_dssp             TCHHHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhh
Confidence            4 344566778899999887543           122335567777775 5777665543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.58  E-value=0.0029  Score=58.29  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++|+|+|+||.|..++..|+..| .+|++++.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence            789999999999999999999999 999998643

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.58  E-value=0.0062  Score=57.47  Aligned_cols=78  Identities=13%  Similarity=0.190  Sum_probs=53.6

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh----CCCceEE
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI----NSTVHII  166 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l----np~v~i~  166 (340)
                      ++..+|.|+|+|.+|+.++..|+..|++++.|+|-+.                   .|++..+..|...    ...+++.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~-------------------~~~~g~a~dL~~~~~~~~~~~~v~   63 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ-------------------GMPNGKALDLLQTCPIEGVDFKVR   63 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCCcEEE
Confidence            4567999999999999999999999987899988542                   2344344444443    2244454


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      ....       .+.++++|+||.+...+
T Consensus        64 ~t~d-------~~a~~~aDvVIi~ag~p   84 (321)
T 3p7m_A           64 GTND-------YKDLENSDVVIVTAGVP   84 (321)
T ss_dssp             EESC-------GGGGTTCSEEEECCSCC
T ss_pred             EcCC-------HHHHCCCCEEEEcCCcC
Confidence            3221       24578999999886543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.55  E-value=0.0082  Score=55.86  Aligned_cols=102  Identities=15%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             HHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCce
Q 019513           86 EGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVH  164 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~  164 (340)
                      ..+..++.++|+|.|+ |.+|+.+++.|+..|. ++.++|...-.                               +.++
T Consensus        12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-------------------------------~~~~   59 (347)
T 4id9_A           12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPSG-------------------------------TGGE   59 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCCS-------------------------------SCCS
T ss_pred             CcccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCC-------------------------------CCcc
Confidence            4567788899999998 7799999999999995 57776643211                               1222


Q ss_pred             EEEecccCCc-ccHHhhcccCcEEEEcCCChh---------------hHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          165 IIEHREALRT-SNALEILSQYEIVVDATDNAP---------------SRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       165 i~~~~~~~~~-~~~~~~l~~~DlVi~~tD~~~---------------~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +  +..+++. +...+.+.++|+||.+.....               .-..+-++|.+.++ .+|..++.+.+|
T Consensus        60 ~--~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg  131 (347)
T 4id9_A           60 E--VVGSLEDGQALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYP  131 (347)
T ss_dssp             E--EESCTTCHHHHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTT
T ss_pred             E--EecCcCCHHHHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhC
Confidence            2  2223332 334556678888887754311               11235567777776 677777655544

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.54  E-value=0.014  Score=52.79  Aligned_cols=98  Identities=17%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +.++|+|.|+|.+|+.+++.|...|. ++++++.+.-   +                          +.+.+++.  ..+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~---~--------------------------~~~~~~~~--~~D   49 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQ---P--------------------------MPAGVQTL--IAD   49 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTS---C--------------------------CCTTCCEE--ECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc---c--------------------------cccCCceE--Ecc
Confidence            45789999999999999999999996 5777764321   1                          01333332  333


Q ss_pred             CC-cccHHhhccc-CcEEEEcCCC------------hhhHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          172 LR-TSNALEILSQ-YEIVVDATDN------------APSRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       172 ~~-~~~~~~~l~~-~DlVi~~tD~------------~~~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      ++ .+...+.+++ +|+||.+...            ...-..+-++|.+.++ .+|..++.+.+|
T Consensus        50 l~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg  114 (286)
T 3gpi_A           50 VTRPDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYG  114 (286)
T ss_dssp             TTCGGGCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCC
T ss_pred             CCChHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEc
Confidence            33 2333445555 9999987531            2223345567776664 577777665554

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.53  E-value=0.0035  Score=58.40  Aligned_cols=110  Identities=15%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ++..+|+|.|+ |.+|+.+++.|...|.. ++..+|...... +.                    ..+..+...-.+..+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~-~~--------------------~~l~~~~~~~~~~~~   80 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG-NL--------------------NNVKSIQDHPNYYFV   80 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC-CG--------------------GGGTTTTTCTTEEEE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc-ch--------------------hhhhhhccCCCeEEE
Confidence            45578999998 77999999999999942 344455322110 00                    011112222234445


Q ss_pred             cccCCc-ccHHhhccc--CcEEEEcCCChhh-----------------HHHHHHHHHHcCCc-EEEEeecCcee
Q 019513          169 REALRT-SNALEILSQ--YEIVVDATDNAPS-----------------RYMISDCCVVLGKP-LVSGAALGLEG  221 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~--~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~p-~i~~~~~g~~G  221 (340)
                      ..+++. +...+.+++  +|+||.+......                 -..+-++|.+.+++ +|..++.+.+|
T Consensus        81 ~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~  154 (346)
T 4egb_A           81 KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYG  154 (346)
T ss_dssp             ECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGC
T ss_pred             EcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhC
Confidence            555553 344556665  8999988653211                 12355778888776 88777665554

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.48  E-value=0.02  Score=54.44  Aligned_cols=88  Identities=11%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|...-.             ..+                 ..  . 
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~-------------~~~-----------------~~--~-  212 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS-------------GVD-----------------WI--A-  212 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT-------------TSC-----------------CE--E-
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc-------------ccC-----------------ce--e-
Confidence            47899999999999999999999999997 57776643210             000                 00  0 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHH---HcCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCV---VLGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~---~~~~p~i~~~  215 (340)
                           ..+..++++.+|+|+.++- +..++.++++...   +.+.-+|+.+
T Consensus       213 -----~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~a  258 (340)
T 4dgs_A          213 -----HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVA  258 (340)
T ss_dssp             -----CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECS
T ss_pred             -----cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECC
Confidence                 1245677889999998875 4566777754322   2345577654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.48  E-value=0.0058  Score=55.92  Aligned_cols=77  Identities=22%  Similarity=0.289  Sum_probs=51.5

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||+|..++..|+..| .+++++|.+.                   .|++.+++.+....   .+...+
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R~~-------------------~~~~~la~~~~~~~---~~~~~~  172 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNRTV-------------------SRAEELAKLFAHTG---SIQALS  172 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSH-------------------HHHHHHHHHTGGGS---SEEECC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEECCH-------------------HHHHHHHHHhhccC---CeeEec
Confidence            367889999999999999999999999 7899876432                   34555555443321   122211


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                        +  +...+  ..+|+||.++....
T Consensus       173 --~--~~~~~--~~~DivVn~t~~~~  192 (271)
T 1nyt_A          173 --M--DELEG--HEFDLIINATSSGI  192 (271)
T ss_dssp             --S--GGGTT--CCCSEEEECCSCGG
T ss_pred             --H--HHhcc--CCCCEEEECCCCCC
Confidence              1  11111  57999999988644

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.47  E-value=0.019  Score=52.63  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .++|+|.|+ |.+|+.+++.|...|. ++.+++.+. .                  +..     +.    .+++  +..+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~------------------~~~-----~~----~~~~--~~~D   50 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSI-G------------------NKA-----IN----DYEY--RVSD   50 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC-C--------------------------------CCEE--EECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCC-C------------------ccc-----CC----ceEE--EEcc
Confidence            368999995 7799999999999995 677776541 0                  000     00    3333  3334


Q ss_pred             CCcccHHhhcccCcEEEEcCCChh-------------hHHHHHHHHHHcCCc-EEEEeecCcee
Q 019513          172 LRTSNALEILSQYEIVVDATDNAP-------------SRYMISDCCVVLGKP-LVSGAALGLEG  221 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~-------------~r~~i~~~~~~~~~p-~i~~~~~g~~G  221 (340)
                      ++.+...+.++++|+||.+.....             .-..+-++|.+.+++ +|..++.+.+|
T Consensus        51 l~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg  114 (311)
T 3m2p_A           51 YTLEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYS  114 (311)
T ss_dssp             CCHHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred             ccHHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhC
Confidence            444556667789999998865321             113456778888876 88777655554

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.43  E-value=0.01  Score=52.60  Aligned_cols=88  Identities=9%  Similarity=0.034  Sum_probs=60.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ..+|+|+|+|.+|..+++.|...|.  ++++|.|.                   .+++    .+.   +.+.+  +....
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~-------------------~~~~----~~~---~~~~~--i~gd~   58 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRKK----VLR---SGANF--VHGDP   58 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGG-------------------GHHH----HHH---TTCEE--EESCT
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe--EEEEECCH-------------------HHHH----HHh---cCCeE--EEcCC
Confidence            4689999999999999999999987  88887542                   1121    222   23333  33334


Q ss_pred             Cccc-HHhh-cccCcEEEEcCCChhhHHHHHHHHHHcCCc
Q 019513          173 RTSN-ALEI-LSQYEIVVDATDNAPSRYMISDCCVVLGKP  210 (340)
Q Consensus       173 ~~~~-~~~~-l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p  210 (340)
                      +... ..+. +.++|+||.++++......+...+++.+..
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~   98 (234)
T 2aef_A           59 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES   98 (234)
T ss_dssp             TCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred             CCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHHCCC
Confidence            4322 2223 688999999999887777777888887653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.43  E-value=0.009  Score=56.52  Aligned_cols=77  Identities=19%  Similarity=0.266  Sum_probs=54.9

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC---CceEE
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVHII  166 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp---~v~i~  166 (340)
                      -...+|.|+|+|.+|+.++..|+..|+ ++|.|+|.+                   ..|++..+..|....|   .+++.
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~~i~   67 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLEDALPFTSPKKIY   67 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC-------------------hHHHHHHHhhHhhhhhhcCCcEEE
Confidence            345789999999999999999999997 689998742                   3456666666665543   33332


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .       . ..+.++++|+||.+...+
T Consensus        68 ~-------~-~~~a~~~aDiVvi~ag~~   87 (326)
T 3vku_A           68 S-------A-EYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             E-------C-CGGGGTTCSEEEECCCCC
T ss_pred             E-------C-cHHHhcCCCEEEECCCCC
Confidence            1       1 134578999999887654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.42  E-value=0.0064  Score=55.71  Aligned_cols=75  Identities=24%  Similarity=0.339  Sum_probs=51.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||+|..++..|+..| .+++++|.+.                   .|++.+++.+.... .  +...+
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~~-------------------~~a~~l~~~~~~~~-~--~~~~~  172 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTF-------------------SKTKELAERFQPYG-N--IQAVS  172 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSH-------------------HHHHHHHHHHGGGS-C--EEEEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCH-------------------HHHHHHHHHccccC-C--eEEee
Confidence            357889999999999999999999999 8999987432                   35666666654321 2  22211


Q ss_pred             ccCCcccHHhhc-ccCcEEEEcCCCh
Q 019513          170 EALRTSNALEIL-SQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l-~~~DlVi~~tD~~  194 (340)
                        +     .++. ..+|+||.|+...
T Consensus       173 --~-----~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          173 --M-----DSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             --G-----GGCCCSCCSEEEECCCC-
T ss_pred             --H-----HHhccCCCCEEEECCCCC
Confidence              1     1111 3799999998754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.40  E-value=0.026  Score=53.02  Aligned_cols=103  Identities=14%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +++++|+|.|+ |++|+.+++.|+.. |..++.+++.+.                   .|...+.+.+.    ...+..+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~-------------------~~~~~~~~~~~----~~~v~~~   75 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE-------------------LKQSEMAMEFN----DPRMRFF   75 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH-------------------HHHHHHHHHHC----CTTEEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh-------------------hhHHHHHHHhc----CCCEEEE
Confidence            56789999995 77999999999999 987888887542                   23333333332    2345555


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEee
Q 019513          169 REALRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAA  216 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~  216 (340)
                      ..++.. +...+.++++|+||.+......                 -..+.++|...++ .+|..++
T Consensus        76 ~~Dl~d~~~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS  142 (344)
T 2gn4_A           76 IGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST  142 (344)
T ss_dssp             ECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ECCCCCHHHHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence            556654 4456677899999998753211                 1235567777775 4666554

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.37  E-value=0.0071  Score=57.78  Aligned_cols=79  Identities=14%  Similarity=0.261  Sum_probs=53.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .++.++|+|+|+|++|..++..|...|. +++++|.+.                   .|.+.+++....   .+.+..  
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~-------------------~r~~~~~~~~~~---~~~~~~--  218 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINV-------------------ERLSYLETLFGS---RVELLY--  218 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHGG---GSEEEE--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH-------------------HHHHHHHHhhCc---eeEeee--
Confidence            4778999999999999999999999998 899987532                   234444333221   121111  


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                        ...++..+.+.++|+||+|+..+.
T Consensus       219 --~~~~~~~~~~~~~DvVI~~~~~~~  242 (361)
T 1pjc_A          219 --SNSAEIETAVAEADLLIGAVLVPG  242 (361)
T ss_dssp             --CCHHHHHHHHHTCSEEEECCCCTT
T ss_pred             --CCHHHHHHHHcCCCEEEECCCcCC
Confidence              122344556678999999997644

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.36  E-value=0.015  Score=54.67  Aligned_cols=110  Identities=14%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             HHHHcccCCcEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc
Q 019513           86 EGQSNLLKSSILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV  163 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v  163 (340)
                      .+...++.++|+|.|+ |.+|+.+++.|... |. ++.++|...-....+                       . ..+. 
T Consensus        17 ~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~-----------------------~-~~~~-   70 (372)
T 3slg_A           17 QGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDL-----------------------V-KHER-   70 (372)
T ss_dssp             ------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGG-----------------------G-GSTT-
T ss_pred             cCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhh-----------------------c-cCCC-
Confidence            3455677889999995 77999999999998 64 677777532110000                       0 0123 


Q ss_pred             eEEEecccCC--cccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCCcEEEEeecCceeE
Q 019513          164 HIIEHREALR--TSNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       164 ~i~~~~~~~~--~~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                       ++.+..+++  .+...+.++++|+||.+......                 -..+-++|.+.+..+|..++.+.+|.
T Consensus        71 -v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~  147 (372)
T 3slg_A           71 -MHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGM  147 (372)
T ss_dssp             -EEEEECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBS
T ss_pred             -eEEEeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCC
Confidence             344445554  34455677889999987653211                 02355677777788888887666553

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.36  E-value=0.0073  Score=58.34  Aligned_cols=98  Identities=15%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCC-c--cCcccHHHHHHHHHhhCCCceEE
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEP-Y--IGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~-d--iG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      +|++.+|+|+|+|..|..+++.|...|+++|+++|.+-+         ++... +  +-..|...+.    +.++.    
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gl---------i~~~R~~~~L~~~k~~~A~----~~~~~----  251 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI---------LNENDPETCLNEYHLEIAR----ITNPE----  251 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE---------CCTTSGGGCSSHHHHHHHH----TSCTT----
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCc---------ccCCCcccccCHHHHHHHH----hhhcc----
Confidence            689999999999999999999999999999999997521         11110 1  2222222222    22221    


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCChh--hHHHHHHHHHHcCCcEEE
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~~p~i~  213 (340)
                           ....++.+.++++|++|.++. +.  ++..+...   ...|+|.
T Consensus       252 -----~~~~~L~eav~~ADVlIG~Sa-p~l~t~emVk~M---a~~pIIf  291 (388)
T 1vl6_A          252 -----RLSGDLETALEGADFFIGVSR-GNILKPEWIKKM---SRKPVIF  291 (388)
T ss_dssp             -----CCCSCHHHHHTTCSEEEECSC-SSCSCHHHHTTS---CSSCEEE
T ss_pred             -----CchhhHHHHHccCCEEEEeCC-CCccCHHHHHhc---CCCCEEE
Confidence                 123567888899999999887 32  34444432   2356664

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=96.36  E-value=0.0029  Score=63.78  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             CCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEE
Q 019513          252 DSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK  300 (340)
Q Consensus       252 ~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~  300 (340)
                      ..+.+.|+++++|+++|+|+||++++...|+.| +++||+.+.....++
T Consensus       483 ~~~el~pvaA~~GGi~AQEviK~iT~q~~Pi~n-~~~fDg~~~~~~~~~  530 (531)
T 1tt5_A          483 GAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNN-TYIYSGMSQTSATFQ  530 (531)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTCSBCCCS-CEEEETTTTEEEECC
T ss_pred             cCCCcCHHHHHHHHHHHHHHHHHHcCCCccccc-eEEEecCCceeEEEe
Confidence            356789999999999999999999999999876 888999998765543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.34  E-value=0.019  Score=53.22  Aligned_cols=107  Identities=14%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      +.+++.+|+|.|+ |++|+.+++.|+..| -++.++|.+.-....+     .  ..+                +.  +..
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-----~--~~l----------------~~--v~~   69 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREV-----L--PPV----------------AG--LSV   69 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCGGG-----S--CSC----------------TT--EEE
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccchhh-----h--hcc----------------CC--ceE
Confidence            4566788999997 779999999999999 4688777532111000     0  000                12  333


Q ss_pred             ecccCCc-ccHHhhcc--cCcEEEEcCCChh--------------hHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          168 HREALRT-SNALEILS--QYEIVVDATDNAP--------------SRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       168 ~~~~~~~-~~~~~~l~--~~DlVi~~tD~~~--------------~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +..+++. +...+.++  ++|+||.+.....              .-..+.++|.+.++ .+|+.++...+|
T Consensus        70 ~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~  141 (330)
T 2pzm_A           70 IEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYG  141 (330)
T ss_dssp             EECCTTCHHHHHHHHHHHCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGC
T ss_pred             EEeeCCCHHHHHHHHhhcCCCEEEECCccCCCccccChhHHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhC
Confidence            3444443 33445556  7888888764321              11235566766665 677766654444

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.34  E-value=0.01  Score=54.54  Aligned_cols=35  Identities=20%  Similarity=0.462  Sum_probs=31.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++|+|+|+||.|..++..|...|+.+|+|++.+
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            46789999999999999999999999999998643

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.33  E-value=0.027  Score=48.89  Aligned_cols=93  Identities=9%  Similarity=0.142  Sum_probs=60.4

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|.| .|++|..+++.|+..| -++.+++.+.-....+                           +.  ++.+..+++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~---------------------------~~--~~~~~~D~~   51 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVPQY---------------------------NN--VKAVHFDVD   51 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSCCC---------------------------TT--EEEEECCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchhhc---------------------------CC--ceEEEeccc
Confidence            699999 5779999999999999 4688877543111000                           23  334444444


Q ss_pred             c--ccHHhhcccCcEEEEcCCChh---------hHHHHHHHHHHcCC-cEEEEeec
Q 019513          174 T--SNALEILSQYEIVVDATDNAP---------SRYMISDCCVVLGK-PLVSGAAL  217 (340)
Q Consensus       174 ~--~~~~~~l~~~DlVi~~tD~~~---------~r~~i~~~~~~~~~-p~i~~~~~  217 (340)
                      .  +...+.++++|+||.+.....         .-..+-++|.+.+. .+|..++.
T Consensus        52 d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  107 (219)
T 3dqp_A           52 WTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTI  107 (219)
T ss_dssp             SCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            3  455667789999999876432         23446667777775 46665543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.32  E-value=0.013  Score=53.09  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++ +|+|||+|++|..++..|...|+ +++++|.+
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~  148 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRT  148 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4677 99999999999999999999998 89988743

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.31  E-value=0.016  Score=54.11  Aligned_cols=74  Identities=19%  Similarity=0.260  Sum_probs=50.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh----hCCCceEEEecc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS----INSTVHIIEHRE  170 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~----lnp~v~i~~~~~  170 (340)
                      ||.|+|+|.+|+.++..|+..|+++|.|+|-+.                   .|++..+..|..    .+..+++.....
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~d   61 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP-------------------GKPQGEALDLAHAAAELGVDIRISGSNS   61 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCCEEEESC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh-------------------hhHHHHHHHHHHhhhhcCCCeEEEECCC
Confidence            699999999999999999999996699998541                   233333333333    344555654321


Q ss_pred             cCCcccHHhhcccCcEEEEcCCCh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                             .+.++++|+||.+...+
T Consensus        62 -------~~a~~~aD~Vi~~ag~~   78 (308)
T 2d4a_B           62 -------YEDMRGSDIVLVTAGIG   78 (308)
T ss_dssp             -------GGGGTTCSEEEECCSCC
T ss_pred             -------HHHhCCCCEEEEeCCCC
Confidence                   13478999999886543

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.31  E-value=0.012  Score=55.34  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=32.3

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++..+|.|+|+|.+|+.+|..|+..|.+++.|+|.+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            456789999999999999999999998889999864

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.28  E-value=0.003  Score=59.47  Aligned_cols=52  Identities=21%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             hhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           74 YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        74 y~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |.++..-..|.......|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       120 ~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~  171 (315)
T 3pp8_A          120 YQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRS  171 (315)
T ss_dssp             HHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             HHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            34433333354333467899999999999999999999999997 57777743

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.28  E-value=0.0028  Score=59.03  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=32.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  154 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRS  154 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCc-EEEEEecc
Confidence            56889999999999999999999999997 57777753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.26  E-value=0.01  Score=56.77  Aligned_cols=119  Identities=20%  Similarity=0.262  Sum_probs=70.6

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEec
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~  169 (340)
                      ++..+|.|||+|.+|..+|.+|+..|. .++++|.+.-....+...        |-.-+....+.+... .|++-+...+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~a~~~DvVi~~vp   90 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE--------GIAGARSIEEFCAKLVKPRVVWLMVP   90 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT--------TCBCCSSHHHHHHHSCSSCEEEECSC
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC--------CCEEeCCHHHHHhcCCCCCEEEEeCC
Confidence            456789999999999999999999994 688888664222222111        111122333334432 3455555544


Q ss_pred             ccCCcc---cHHhhcccCcEEEEcCCChh-hHHHHHHHHHHcCCcEEEEeecC
Q 019513          170 EALRTS---NALEILSQYEIVVDATDNAP-SRYMISDCCVVLGKPLVSGAALG  218 (340)
Q Consensus       170 ~~~~~~---~~~~~l~~~DlVi~~tD~~~-~r~~i~~~~~~~~~p~i~~~~~g  218 (340)
                      .....+   .....++.-++|||++-..+ .-..+.+.+...++.++.+.+.|
T Consensus        91 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           91 AAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             GGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence            431111   12233455679998876643 34456666777888888876554

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.25  E-value=0.013  Score=54.88  Aligned_cols=78  Identities=22%  Similarity=0.326  Sum_probs=52.2

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC----CCce
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN----STVH  164 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln----p~v~  164 (340)
                      +.+..+|.|||+|.+|..++..|+..|. .+|.|+|-+.                   .|++..+..|....    ..++
T Consensus         3 ~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~   63 (317)
T 3d0o_A            3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT-------------------EKVRGDVMDLKHATPYSPTTVR   63 (317)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH-------------------HHHHHHHHHHHHHGGGSSSCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh-------------------hHhhhhhhhHHhhhhhcCCCeE
Confidence            3456799999999999999999999886 6799988532                   23333333333322    3445


Q ss_pred             EEEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          165 IIEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       165 i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      +..     .   ..+.++++|+||.+...+
T Consensus        64 v~~-----~---~~~a~~~aDvVvi~ag~~   85 (317)
T 3d0o_A           64 VKA-----G---EYSDCHDADLVVICAGAA   85 (317)
T ss_dssp             EEE-----C---CGGGGTTCSEEEECCCCC
T ss_pred             EEe-----C---CHHHhCCCCEEEECCCCC
Confidence            543     1   134478999999887654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.24  E-value=0.0049  Score=58.24  Aligned_cols=51  Identities=18%  Similarity=0.223  Sum_probs=38.7

Q ss_pred             hhhccCCCCCHH-HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           75 SRHLLLPSFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        75 ~Rq~~l~~~G~~-~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|+..-..|... ....|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       118 ~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          118 LNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             HHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             HHHHhcCCcccCCCCccccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            444443345433 2457999999999999999999999999997 57777753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.24  E-value=0.015  Score=54.07  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      ..+|+|||+|.+|+.++..|+..|. ++++++|.+
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4589999999999999999999995 479998864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.24  E-value=0.012  Score=54.78  Aligned_cols=38  Identities=13%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ...+..+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            34445789999999999999999999996 788888654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.22  E-value=0.014  Score=54.31  Aligned_cols=75  Identities=23%  Similarity=0.308  Sum_probs=50.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC----CCceEEEe
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN----STVHIIEH  168 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln----p~v~i~~~  168 (340)
                      .+|+|||+|.+|+.++..|+..|+ .++.++|.+.                   .|++..+..+...+    ..+.+.. 
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~-   61 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE-------------------AKVKADQIDFQDAMANLEAHGNIVI-   61 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHGGGSSSCCEEEE-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH-------------------HHHHHHHHHHHhhhhhcCCCeEEEe-
Confidence            479999999999999999999996 6799987542                   24444444443322    1223221 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                            .+. +.++++|+||.|+..+.
T Consensus        62 ------~d~-~~~~~aDvViiav~~~~   81 (309)
T 1hyh_A           62 ------NDW-AALADADVVISTLGNIK   81 (309)
T ss_dssp             ------SCG-GGGTTCSEEEECCSCGG
T ss_pred             ------CCH-HHhCCCCEEEEecCCcc
Confidence                  112 45688999999998755

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.22  E-value=0.017  Score=53.00  Aligned_cols=90  Identities=19%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCC--CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +..+|.|||+|.+|+.++..|+..|.  .++.++|.+.                   .|++.+++.   .  .+.+    
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~-------------------~~~~~l~~~---~--gi~~----   53 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL-------------------DKLDFFKEK---C--GVHT----   53 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS-------------------HHHHHHHHT---T--CCEE----
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH-------------------HHHHHHHHH---c--CCEE----
Confidence            35689999999999999999999996  2788877432                   123333221   1  1221    


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH---cCCcEEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV---LGKPLVS  213 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~---~~~p~i~  213 (340)
                          ..+..+.++++|+||.|+.....+..+.++...   .+..+|+
T Consensus        54 ----~~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~l~~~~iiiS   96 (280)
T 3tri_A           54 ----TQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVIS   96 (280)
T ss_dssp             ----ESCHHHHHSSCSEEEECSCGGGHHHHHHHHHHHHHTTTCEEEE
T ss_pred             ----eCChHHHHhcCCeEEEEeCHHHHHHHHHHHHhhccCCCeEEEE
Confidence                123456678899999999655555556555432   2335565

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.21  E-value=0.01  Score=56.07  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=53.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC----ceEEE
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST----VHIIE  167 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~----v~i~~  167 (340)
                      ..+|.|+|+|.+|+.++..|+..|. +++.|+|.+                   ..|++..+..|....|.    +++. 
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~v~i~-   64 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN-------------------KEKAMGDVMDLNHGKAFAPQPVKTS-   64 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGSSSCCEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc-------------------hHHHHHHHHHHHhccccccCCeEEE-
Confidence            4689999999999999999999997 589998743                   34666655556655443    3332 


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                       .     .+ .+.++++|+||.+...+
T Consensus        65 -~-----~~-~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A           65 -Y-----GT-YEDCKDADIVCICAGAN   84 (326)
T ss_dssp             -E-----EC-GGGGTTCSEEEECCSCC
T ss_pred             -e-----Cc-HHHhCCCCEEEEecccC
Confidence             1     11 24578999999987653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.21  E-value=0.012  Score=54.10  Aligned_cols=32  Identities=28%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++|.|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            689999999999999999999997 68888754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.20  E-value=0.033  Score=51.21  Aligned_cols=108  Identities=15%  Similarity=0.040  Sum_probs=64.4

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe-
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH-  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~-  168 (340)
                      +++++|+|.|+ |++|+.+++.|+..|. ++.++|.+.                   .+.+.+.+.+....+ ..+..+ 
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~~   67 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA-------------------SKLANLQKRWDAKYP-GRFETAV   67 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHST-TTEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc-------------------ccHHHHHHHhhccCC-CceEEEE
Confidence            56788999997 7899999999999995 576665321                   133334444443332 123333 


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCCCh------hh--------HHHHHHHHHH-cC-CcEEEEeecCc
Q 019513          169 REALRT-SNALEILSQYEIVVDATDNA------PS--------RYMISDCCVV-LG-KPLVSGAALGL  219 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD~~------~~--------r~~i~~~~~~-~~-~p~i~~~~~g~  219 (340)
                      ..+++. +...++++++|+||.+....      ..        -..+-++|.. .+ ..+|..++...
T Consensus        68 ~~D~~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~  135 (342)
T 1y1p_A           68 VEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVS  135 (342)
T ss_dssp             CSCTTSTTTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGG
T ss_pred             ecCCcChHHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHH
Confidence            344443 34456677899999986432      11        1224455653 33 45777665543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.19  E-value=0.02  Score=53.39  Aligned_cols=74  Identities=20%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh----hCCCceEEEec
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS----INSTVHIIEHR  169 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~----lnp~v~i~~~~  169 (340)
                      ||.|||+|.+|+.+|..|+..|. ++|.|+|-                   -..|++.-+.-|..    ++.+.++....
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~G~a~DL~h~~~~~~~~~~i~~~~   62 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI-------------------AEDLAVGEAMDLAHAAAGIDKYPKIVGGA   62 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS-------------------SHHHHHHHHHHHHHHHGGGTCCCEEEEES
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCCcchhhhhhhhcccccCCCCCeEecCC
Confidence            69999999999999999998875 88999873                   22345544545554    33334443322


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                             ..+.++++|+||.+..-+
T Consensus        63 -------d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A           63 -------DYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             -------CGGGGTTCSEEEECCCCC
T ss_pred             -------CHHHhCCCCEEEEecCCC
Confidence                   123478899999887654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.19  E-value=0.007  Score=57.25  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|+.+|..|+..|...+.|+|.|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998459999854

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.17  E-value=0.0054  Score=56.61  Aligned_cols=76  Identities=21%  Similarity=0.213  Sum_probs=51.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC--C-CceEE
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN--S-TVHII  166 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln--p-~v~i~  166 (340)
                      .+++++|+|+|+||+|..++..|+..|  +++++|.+.                   .|++.+++.+....  . .+.+.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~~~~~~d  183 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTV-------------------EKAEALAKEIAEKLNKKFGEEVK  183 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSH-------------------HHHHHHHHHHHHHHTCCHHHHEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCH-------------------HHHHHHHHHHhhhcccccceeEE
Confidence            467899999999999999999999999  899876431                   35555655554321  0 01222


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCC
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      ..+  +     .+.+.++|+||.++..
T Consensus       184 ~~~--~-----~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          184 FSG--L-----DVDLDGVDIIINATPI  203 (287)
T ss_dssp             EEC--T-----TCCCTTCCEEEECSCT
T ss_pred             Eee--H-----HHhhCCCCEEEECCCC
Confidence            211  1     2345789999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.14  E-value=0.016  Score=54.63  Aligned_cols=34  Identities=32%  Similarity=0.481  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+|.|+|+|.+|+.+|..|+..|...+.|+|.|
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3689999999999999999999998559999864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.14  E-value=0.034  Score=51.84  Aligned_cols=104  Identities=16%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +..++|+|.|+ |.+|+.+++.|...| .++.+++.+.               .-...|...+ +.+..  +.+++  +.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~---------------~~~~~~~~~~-~~l~~--~~v~~--~~   66 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPG---------------PRSPSKAKIF-KALED--KGAII--VY   66 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSS---------------CCCHHHHHHH-HHHHH--TTCEE--EE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCC---------------CCChhHHHHH-HHHHh--CCcEE--EE
Confidence            34578999998 779999999999999 5677766432               0011122221 12222  34444  34


Q ss_pred             ccCC-cccHHhhcc--cCcEEEEcCCC--hhhHHHHHHHHHHcC-CcEEEEe
Q 019513          170 EALR-TSNALEILS--QYEIVVDATDN--APSRYMISDCCVVLG-KPLVSGA  215 (340)
Q Consensus       170 ~~~~-~~~~~~~l~--~~DlVi~~tD~--~~~r~~i~~~~~~~~-~p~i~~~  215 (340)
                      .+++ .+...+.++  ++|+||.+...  ......+-++|.+.+ ++.+..+
T Consensus        67 ~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S  118 (346)
T 3i6i_A           67 GLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPS  118 (346)
T ss_dssp             CCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred             eecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence            4444 355667778  99999998874  334455667888888 7655433

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.14  E-value=0.064  Score=52.18  Aligned_cols=89  Identities=15%  Similarity=0.256  Sum_probs=62.0

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +.+|+|+|+|.+|..+++.|...|+ .+++||.|.-                   +++.    +++..  +.  .+..+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~-------------------~v~~----~~~~g--~~--vi~GDa   55 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPD-------------------HIET----LRKFG--MK--VFYGDA   55 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHH-------------------HHHH----HHHTT--CC--CEESCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------HHHH----HHhCC--Ce--EEEcCC
Confidence            4589999999999999999999996 5889997641                   2222    22222  22  233333


Q ss_pred             Cccc-HHhh-cccCcEEEEcCCChhhHHHHHHHHHHcCC
Q 019513          173 RTSN-ALEI-LSQYEIVVDATDNAPSRYMISDCCVVLGK  209 (340)
Q Consensus       173 ~~~~-~~~~-l~~~DlVi~~tD~~~~r~~i~~~~~~~~~  209 (340)
                      +... .... +.++|+||.++++......+...++..+.
T Consensus        56 t~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p   94 (413)
T 3l9w_A           56 TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFP   94 (413)
T ss_dssp             TCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCC
Confidence            3322 2222 57899999999998888888888888764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.13  E-value=0.02  Score=49.62  Aligned_cols=94  Identities=21%  Similarity=0.187  Sum_probs=56.7

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|+| +|.+|+.++..|+..|. ++.++|.+.                   .|++.+.+.+....+...+.       
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~-------   54 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE-------------------EKAEAKAAEYRRIAGDASIT-------   54 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH-------------------HHHHHHHHHHHHHHSSCCEE-------
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHhccccccCCCC-------
Confidence            699999 99999999999999995 688877432                   12233322221110101111       


Q ss_pred             cccHHhhcccCcEEEEcCCChhhHHHHHHHHH-HcCCcEEEEe
Q 019513          174 TSNALEILSQYEIVVDATDNAPSRYMISDCCV-VLGKPLVSGA  215 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~-~~~~p~i~~~  215 (340)
                      ..+..+.++++|+||.|+.....+..+.+... ..+..+++..
T Consensus        55 ~~~~~~~~~~~D~Vi~~~~~~~~~~~~~~l~~~~~~~~vi~~~   97 (212)
T 1jay_A           55 GMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPL   97 (212)
T ss_dssp             EEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTTSEEEECC
T ss_pred             hhhHHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCEEEEcC
Confidence            12344567789999999986555555544322 1366677654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.031  Score=51.32  Aligned_cols=88  Identities=16%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             HHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC
Q 019513           86 EGQSNLLKSSILVIGA-GGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST  162 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~  162 (340)
                      .....|++++|+|.|+ ||+|..+++.|+..|.+  ++.++|.+                   ..+.+.+++.+...++.
T Consensus        26 ~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-------------------~~~~~~~~~~l~~~~~~   86 (287)
T 3rku_A           26 KAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-------------------LEKLEELKKTIDQEFPN   86 (287)
T ss_dssp             HHHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-------------------HHHHHHHHHHHHHHCTT
T ss_pred             cchhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-------------------HHHHHHHHHHHHhhCCC
Confidence            3446788999999986 57999999999999875  77777643                   23567778888888888


Q ss_pred             ceEEEecccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          163 VHIIEHREALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       163 v~i~~~~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      .++..+..+++.. ....++       ...|+||.+..
T Consensus        87 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG  124 (287)
T 3rku_A           87 AKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAG  124 (287)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECCC
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            8888888777753 333333       36899998765

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.12  E-value=0.038  Score=51.49  Aligned_cols=113  Identities=12%  Similarity=0.029  Sum_probs=66.8

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~  168 (340)
                      ++.++|+|.|+ |.+|+.+++.|+..|. ++.++|...-.               ...+.+.+.+.+... .+.  +..+
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---------------~~~~~~~~~~~~~~~~~~~--~~~~   86 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG---------------HQRNLDEVRSLVSEKQWSN--FKFI   86 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC---------------CHHHHHHHHHHSCHHHHTT--EEEE
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCcc---------------chhhHHHHhhhcccccCCc--eEEE
Confidence            56678999998 7799999999999994 67777643200               001122222211111 123  4444


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          169 REALRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      ..+++. +...+.++++|+||.+......                 -..+-++|.+.++ .+|..++.+.+|
T Consensus        87 ~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~  158 (352)
T 1sb8_A           87 QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYG  158 (352)
T ss_dssp             ECCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGT
T ss_pred             ECCCCCHHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcC
Confidence            555553 3456677899999998763210                 1234567777775 477766654443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.11  E-value=0.017  Score=54.93  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHII  166 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~  166 (340)
                      -+.+.||.|||+ |.+|+.+|..|+..|. .+|.|+|-+                   +.|++..+.-|... .|...+.
T Consensus         5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~-------------------~~k~~g~a~DL~~~~~~~~~i~   65 (343)
T 3fi9_A            5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF-------------------AVGLEGVAEEIRHCGFEGLNLT   65 (343)
T ss_dssp             CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC-------------------HHHHHHHHHHHHHHCCTTCCCE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhHHHHHHhhhhCcCCCCceE
Confidence            456789999998 9999999999999997 589998843                   23555544445543 2222222


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .      ..+..+.++++|+||.+...+
T Consensus        66 ~------t~d~~~al~dADvVvitaG~p   87 (343)
T 3fi9_A           66 F------TSDIKEALTDAKYIVSSGGAP   87 (343)
T ss_dssp             E------ESCHHHHHTTEEEEEECCC--
T ss_pred             E------cCCHHHHhCCCCEEEEccCCC
Confidence            1      123445678999999887654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.10  E-value=0.027  Score=51.52  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=28.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|+|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            479999999999999999999995 68888753

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.08  E-value=0.034  Score=49.02  Aligned_cols=101  Identities=10%  Similarity=0.091  Sum_probs=62.5

Q ss_pred             CCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .++|+|.| .|++|..+++.|+..|--++.+++.+.-....+                         ..+  .+..+..+
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~-------------------------~~~--~~~~~~~D   75 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP-------------------------YPT--NSQIIMGD   75 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS-------------------------CCT--TEEEEECC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc-------------------------ccC--CcEEEEec
Confidence            35799999 578999999999999944677777543211100                         001  23444555


Q ss_pred             CCc-ccHHhhcccCcEEEEcCCChhhHH---HHHHHHHHcCCc-EEEEeecCce
Q 019513          172 LRT-SNALEILSQYEIVVDATDNAPSRY---MISDCCVVLGKP-LVSGAALGLE  220 (340)
Q Consensus       172 ~~~-~~~~~~l~~~DlVi~~tD~~~~r~---~i~~~~~~~~~p-~i~~~~~g~~  220 (340)
                      ++. +...+.++++|+||.+........   .+-+.+.+.+.. +|+.+..+.+
T Consensus        76 l~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~~~  129 (236)
T 3qvo_A           76 VLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIY  129 (236)
T ss_dssp             TTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCCC-
T ss_pred             CCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEEecceec
Confidence            553 455677889999998776533222   245566676654 7766655443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.07  E-value=0.019  Score=51.12  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=27.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|.|||+|.+|..++++|...|+.-..++|.+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            69999999999999999998887544788765

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.06  E-value=0.0079  Score=59.47  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=63.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .||+|+|+|-+|..+|+.|...| ..+++||.|.-                   ++    +.+.+.. ++  .++....+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~-~~v~vId~d~~-------------------~~----~~~~~~~-~~--~~i~Gd~~   56 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGEN-NDITIVDKDGD-------------------RL----RELQDKY-DL--RVVNGHAS   56 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTT-EEEEEEESCHH-------------------HH----HHHHHHS-SC--EEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHH-------------------HH----HHHHHhc-Cc--EEEEEcCC
Confidence            47999999999999999999888 46999997641                   12    2222211 22  33334444


Q ss_pred             ccc-HH-hhcccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEE
Q 019513          174 TSN-AL-EILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVS  213 (340)
Q Consensus       174 ~~~-~~-~~l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~  213 (340)
                      ..+ .. .-++++|++|.+|++.+.-..+...|+.. +.+-+-
T Consensus        57 ~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~i   99 (461)
T 4g65_A           57 HPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRI   99 (461)
T ss_dssp             CHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred             CHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcCCccce
Confidence            322 22 23578999999999998888888888774 665543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.05  E-value=0.028  Score=52.67  Aligned_cols=32  Identities=31%  Similarity=0.337  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|+|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            589999999999999999999995 58888865

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.05  E-value=0.028  Score=52.84  Aligned_cols=74  Identities=14%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh----hCCCceEEEec
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS----INSTVHIIEHR  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~----lnp~v~i~~~~  169 (340)
                      .+|.|||+|.+|+.++..|+..|...+.|+|-|.                   .|++..+..+..    .....++....
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~-------------------~~l~~~~~~l~~~~~~~~~~~~i~~t~   65 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK-------------------NMPHGKALDTSHTNVMAYSNCKVSGSN   65 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTHHHHHTCCCCEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH-------------------HHHHHHHHHHHhhhhhcCCCcEEEECC
Confidence            5899999999999999999999984599988542                   233333333332    23334444321


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                            +. +.++++|+||.+...
T Consensus        66 ------d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A           66 ------TY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             ------CG-GGGTTCSEEEECCSC
T ss_pred             ------CH-HHhCCCCEEEEeCCC
Confidence                  12 457899999999743

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.03  E-value=0.021  Score=53.46  Aligned_cols=74  Identities=22%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC----CceEEE
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIE  167 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp----~v~i~~  167 (340)
                      ..+|.|||+|.+|+.++..|+..|. ++|.++|-+.                   .|++..+..|....+    .+++..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~-------------------~~~~~~~~dl~~~~~~~~~~~~i~~   66 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE-------------------SKAIGDAMDFNHGKVFAPKPVDIWH   66 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc-------------------chHHHHHhhHHHHhhhcCCCeEEEc
Confidence            3689999999999999999999884 6799998532                   234443444444433    444442


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCC
Q 019513          168 HREALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                           .   ..+.++++|+||.+...
T Consensus        67 -----~---~~~al~~aDvViia~~~   84 (316)
T 1ldn_A           67 -----G---DYDDCRDADLVVICAGA   84 (316)
T ss_dssp             -----C---CGGGTTTCSEEEECCSC
T ss_pred             -----C---cHHHhCCCCEEEEcCCC
Confidence                 1   12347899999998543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.97  E-value=0.036  Score=47.93  Aligned_cols=94  Identities=20%  Similarity=0.064  Sum_probs=57.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|.|+ |++|+.+++.|+..|. ++.+++.+.-                   +..    .+  ..+.+++  +..+++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------------~~~----~~--~~~~~~~--~~~D~~   53 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQ-------------------KAA----DR--LGATVAT--LVKEPL   53 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHH-------------------HHH----HH--TCTTSEE--EECCGG
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEeccc-------------------ccc----cc--cCCCceE--Eecccc
Confidence            5999998 7899999999999995 6777654320                   111    11  1234443  344454


Q ss_pred             cccHHhhcccCcEEEEcCCCh----------hhHHHHHHHHHHcCCcEEEEeec
Q 019513          174 TSNALEILSQYEIVVDATDNA----------PSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~----------~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                      .... +.+.++|+||.+....          ..-..+-+++.+.+..+|..++.
T Consensus        54 d~~~-~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           54 VLTE-ADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             GCCH-HHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             cccH-hhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            4333 6778999999988542          11122445566666666665543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.96  E-value=0.026  Score=52.19  Aligned_cols=32  Identities=34%  Similarity=0.626  Sum_probs=28.7

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.||| +|.+|+.++..|+..|. ++.++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            5799999 99999999999999996 68888754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.95  E-value=0.013  Score=52.41  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV---GRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D  126 (340)
                      .+|.|||+|.+|..++..|+..|.   .++.++|.+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            579999999999999999999996   378887643

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.95  E-value=0.033  Score=50.75  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=58.5

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|+|.|+ |.+|+.+++.|+..|. ++.++|...-....    .                     ..+.++  .+..++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~----~---------------------~~~~~~--~~~~Dl   52 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDNLSSGRRE----F---------------------VNPSAE--LHVRDL   52 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSCCGG----G---------------------SCTTSE--EECCCT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCCchh----h---------------------cCCCce--EEECcc
Confidence            37999998 7799999999999995 57777643211000    0                     022333  333344


Q ss_pred             CcccHHhhcccCcEEEEcCCCh---------h--------hHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          173 RTSNALEILSQYEIVVDATDNA---------P--------SRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~---------~--------~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      ......+.++. |+||.+....         .        .-..+.++|.+.++ .+|+.++...+|
T Consensus        53 ~d~~~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg  118 (312)
T 3ko8_A           53 KDYSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYG  118 (312)
T ss_dssp             TSTTTTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGC
T ss_pred             ccHHHHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhC
Confidence            43324455566 9999886521         1        11235566777775 577777655544

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.93  E-value=0.057  Score=46.80  Aligned_cols=100  Identities=10%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             CcEEEEcC-ChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGA-GGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++|+|.|+ |++|..+++.|+ ..|. ++.+++.+.-+                  |.+    .+....+.  +..+..+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~------------------~~~----~~~~~~~~--~~~~~~D   60 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT------------------RIP----PEIIDHER--VTVIEGS   60 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH------------------HSC----HHHHTSTT--EEEEECC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc------------------cch----hhccCCCc--eEEEECC
Confidence            45999995 889999999999 8996 67777643210                  111    11122333  3444555


Q ss_pred             CCc-ccHHhhcccCcEEEEcCCChhh-HHHHHHHHHHcCC-cEEEEeecC
Q 019513          172 LRT-SNALEILSQYEIVVDATDNAPS-RYMISDCCVVLGK-PLVSGAALG  218 (340)
Q Consensus       172 ~~~-~~~~~~l~~~DlVi~~tD~~~~-r~~i~~~~~~~~~-p~i~~~~~g  218 (340)
                      ++. +...+.++++|+||.+...... -..+-+.+.+.+. .+|+.+..+
T Consensus        61 ~~d~~~~~~~~~~~d~vv~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           61 FQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             TTCHHHHHHHHTTCSEEEESCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             CCCHHHHHHHHcCCCEEEEcCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            553 4556677899999998864221 2234455666664 466655443

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.93  E-value=0.0094  Score=56.33  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=38.7

Q ss_pred             hhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           74 YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        74 y~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |.+++.-..|.......|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       121 ~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  172 (324)
T 3hg7_A          121 YREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRS  172 (324)
T ss_dssp             HHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             HHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            44444333454333457999999999999999999999999997 57777653

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.91  E-value=0.022  Score=53.25  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+|.|||+|.+|+.+|..|+..|...+.++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            3589999999999999999999998669999865

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.91  E-value=0.012  Score=54.77  Aligned_cols=73  Identities=21%  Similarity=0.286  Sum_probs=47.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC---CCceEEEecc
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN---STVHIIEHRE  170 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln---p~v~i~~~~~  170 (340)
                      ||.|||+|.+|+.++..|+..|. +++.++|.+.                   .|++..+..+....   +..++..   
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~i~~---   59 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE-------------------DRAQAEAEDIAHAAPVSHGTRVWH---   59 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH-------------------HHHHHHHHHHTTSCCTTSCCEEEE---
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH-------------------HHHHHHHHhhhhhhhhcCCeEEEE---
Confidence            79999999999999999999985 5799998652                   12332233333322   2334432   


Q ss_pred             cCCcccHHhhcccCcEEEEcCCCh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                          .+ .+.++++|+||.++..+
T Consensus        60 ----~~-~~a~~~aDvVIi~~~~~   78 (304)
T 2v6b_A           60 ----GG-HSELADAQVVILTAGAN   78 (304)
T ss_dssp             ----EC-GGGGTTCSEEEECC---
T ss_pred             ----CC-HHHhCCCCEEEEcCCCC
Confidence                11 23478999999998544

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=95.91  E-value=0.028  Score=51.48  Aligned_cols=98  Identities=19%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCccc-ccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVE-LNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve-~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++|+|.|+ |++|+.+++.|...|  .+.+++...-. ...+                          .+.  +..+..+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~~~~~~~~~--------------------------~~~--~~~~~~D   51 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNLSSGNEEFV--------------------------NEA--ARLVKAD   51 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEECCCSSCCGGGS--------------------------CTT--EEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEEcCCCCChhhc--------------------------CCC--cEEEECc
Confidence            47999996 779999999999998  45554421110 0000                          112  3344445


Q ss_pred             CCcccHHhhcccCcEEEEcCCCh---------h--------hHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          172 LRTSNALEILSQYEIVVDATDNA---------P--------SRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~---------~--------~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      ++.+...+.++++|+||.+....         .        .-..+-++|.+.+. .+|+.++...+|
T Consensus        52 l~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg  119 (313)
T 3ehe_A           52 LAADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYG  119 (313)
T ss_dssp             TTTSCCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGC
T ss_pred             CChHHHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhC
Confidence            55455667778899999876421         1        11124456777665 678877665554

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.90  E-value=0.051  Score=47.63  Aligned_cols=76  Identities=11%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +++++|+|.|+ |++|..+++.|+..|.. ++.++|.+.-.   +.           ..+           .+.+  ..+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~---~~-----------~~~-----------~~~~--~~~   68 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT---FD-----------EEA-----------YKNV--NQE   68 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC---CC-----------SGG-----------GGGC--EEE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC---cc-----------ccc-----------cCCc--eEE
Confidence            56788999995 78999999999999963 78888754311   10           000           0122  333


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCCC
Q 019513          169 REALRT-SNALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD~  193 (340)
                      ..+++. +...+.+++.|+||.+...
T Consensus        69 ~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           69 VVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             ECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             ecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            344443 4455677889999998765

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.89  E-value=0.057  Score=51.01  Aligned_cols=107  Identities=15%  Similarity=0.167  Sum_probs=63.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .++.++|+|.|+ |.+|+.+++.|...|..++.++|...-..    ...      +   +          ..+  .++.+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----~~~------l---~----------~~~--~v~~~   83 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE----KIN------V---P----------DHP--AVRFS   83 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCC----GGG------S---C----------CCT--TEEEE
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCc----hhh------c---c----------CCC--ceEEE
Confidence            466789999996 77999999999999955677776432110    000      0   0          012  24444


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHc-CC-cEEEEeecCcee
Q 019513          169 REALRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVL-GK-PLVSGAALGLEG  221 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~-~~-p~i~~~~~g~~G  221 (340)
                      ..+++. +...+.++++|+||.+......                 -..+.++|.+. ++ .+|..++...+|
T Consensus        84 ~~Dl~d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg  156 (377)
T 2q1s_A           84 ETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIA  156 (377)
T ss_dssp             CSCTTCHHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC----
T ss_pred             ECCCCCHHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcC
Confidence            455553 3455677899999998764311                 12244667666 54 677777655544

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.88  E-value=0.027  Score=52.94  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=51.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC---CCceEEEec
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN---STVHIIEHR  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln---p~v~i~~~~  169 (340)
                      .||.|+|+|.+|..++..|+..|. .+|.|+|-+                   ..|++..+..|....   ..+++..  
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~v~~--   64 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV-------------------KDRTKGDALDLEDAQAFTAPKKIYS--   64 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHGGGGGSCCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC-------------------chHHHHHHHHHHHHHHhcCCeEEEE--
Confidence            589999999999999999998884 578888742                   235555555555443   3444443  


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                         .   ..+.++++|+||.+...+
T Consensus        65 ---~---~~~a~~~aDvVii~ag~~   83 (318)
T 1ez4_A           65 ---G---EYSDCKDADLVVITAGAP   83 (318)
T ss_dssp             ---C---CGGGGTTCSEEEECCCC-
T ss_pred             ---C---CHHHhCCCCEEEECCCCC
Confidence               1   134478999999887654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.87  E-value=0.052  Score=46.62  Aligned_cols=93  Identities=22%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|.|+ |++|+.+++.|+..| -++.+++.+.                   .|       +..+.+.+++  +..+++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~-------------------~~-------~~~~~~~~~~--~~~D~~   52 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNA-------------------GK-------ITQTHKDINI--LQKDIF   52 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCS-------------------HH-------HHHHCSSSEE--EECCGG
T ss_pred             eEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCc-------------------hh-------hhhccCCCeE--Eecccc
Confidence            6999996 789999999999999 4677776431                   11       1122244544  334444


Q ss_pred             cccHHhhcccCcEEEEcCCChh--------hHHHHHHHHHHcC-CcEEEEeec
Q 019513          174 TSNALEILSQYEIVVDATDNAP--------SRYMISDCCVVLG-KPLVSGAAL  217 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~--------~r~~i~~~~~~~~-~p~i~~~~~  217 (340)
                      .... +.+.++|+||.+.....        .-..+-+++.+.+ ..+|..+..
T Consensus        53 d~~~-~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           53 DLTL-SDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             GCCH-HHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             Chhh-hhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            4333 67789999999876532        1123555666664 446655443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.87  E-value=0.019  Score=53.04  Aligned_cols=36  Identities=19%  Similarity=0.386  Sum_probs=32.5

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|.+++|+|+|+|.+|..+++.|...|. ++.++|..
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~  187 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE  187 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            5788999999999999999999999998 78888753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.84  E-value=0.028  Score=53.94  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=32.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+++|+|+|+|++|..+++.+...|. +++++|.+
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~  200 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDIN  200 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            5889999999999999999999999998 78888853

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.83  E-value=0.042  Score=51.25  Aligned_cols=75  Identities=21%  Similarity=0.233  Sum_probs=49.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh----hCCCceEEEec
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS----INSTVHIIEHR  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~----lnp~v~i~~~~  169 (340)
                      .+|.|||+|.+|..++..|+..|.-.+.|+|-+.                   .|++..+..|.+    .....++....
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~   63 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE-------------------GVPQGKALDLYEASPIEGFDVRVTGTN   63 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc-------------------cHHHHHHHhHHHhHhhcCCCeEEEECC
Confidence            5899999999999999999999973499988542                   123222223332    23344454322


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                            +. +.++++|+||.+...+
T Consensus        64 ------d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A           64 ------NY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             ------CG-GGGTTCSEEEECCCC-
T ss_pred             ------CH-HHHCCCCEEEEcCCCC
Confidence                  12 3478999999997543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.83  E-value=0.013  Score=55.47  Aligned_cols=80  Identities=16%  Similarity=0.290  Sum_probs=54.8

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC---Cce
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVH  164 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp---~v~  164 (340)
                      ......+|.|+|+|.+|+.++..|+..|. .++.|+|-+                   ..|++..+.-|....+   ...
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~   75 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI-------------------EDKLKGEMMDLQHGSLFLKTPK   75 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCSCCE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC-------------------hHHHHHHHHhhhhhhhccCCCe
Confidence            45567899999999999999999999997 479998742                   3467776666765432   222


Q ss_pred             EEEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          165 IIEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       165 i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      +....      + .+.++++|+||.+...+
T Consensus        76 i~~~~------d-~~~~~~aDiVvi~aG~~   98 (331)
T 4aj2_A           76 IVSSK------D-YSVTANSKLVIITAGAR   98 (331)
T ss_dssp             EEECS------S-GGGGTTEEEEEECCSCC
T ss_pred             EEEcC------C-HHHhCCCCEEEEccCCC
Confidence            32211      1 23478999999886543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.81  E-value=0.04  Score=51.46  Aligned_cols=39  Identities=28%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ...+++++|+|.|+ |.+|+.+++.|+..|..++.++|..
T Consensus        41 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           41 GSGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            34567789999998 7799999999999996678888754

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.81  E-value=0.029  Score=52.17  Aligned_cols=74  Identities=19%  Similarity=0.164  Sum_probs=49.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC----CCceEEEec
Q 019513           95 SILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN----STVHIIEHR  169 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln----p~v~i~~~~  169 (340)
                      +|.|+|+|.+|+.++..|+..|.. ++.|+|.+.                   .|++..+..+...+    ...++....
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~   62 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE-------------------DLAVGEAMDLAHAAAGIDKYPKIVGGA   62 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH-------------------HHHHHHHHHHHHHHHTTTCCCEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh-------------------HHHHHHHHHHHhhhhhcCCCCEEEEeC
Confidence            699999999999999999999864 899988542                   23332223333332    234454322


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                            + .+.++++|+||.+...+
T Consensus        63 ------d-~~a~~~aDiVViaag~~   80 (294)
T 1oju_A           63 ------D-YSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             ------C-GGGGTTCSEEEECCCCC
T ss_pred             ------C-HHHhCCCCEEEECCCCC
Confidence                  1 45678999999987654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.81  E-value=0.032  Score=50.95  Aligned_cols=87  Identities=11%  Similarity=0.158  Sum_probs=55.8

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|.|||+ |.+|+.++..|+..|. +++++|.+.                   .+++.+    .+.  .+.+       
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~-------------------~~~~~~----~~~--g~~~-------   58 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAP-------------------EGRDRL----QGM--GIPL-------   58 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSH-------------------HHHHHH----HHT--TCCC-------
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCH-------------------HHHHHH----Hhc--CCCc-------
Confidence            47999999 9999999999999996 677776431                   122222    221  1211       


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEEe
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSGA  215 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~~  215 (340)
                      .  +..+.++++|+||.|+-....+..+.++...  .+..+|+.+
T Consensus        59 ~--~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv~~s  101 (286)
T 3c24_A           59 T--DGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILD  101 (286)
T ss_dssp             C--CSSGGGGTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEESC
T ss_pred             C--CHHHHhcCCCEEEEcCCchHHHHHHHHHHHhCCCCCEEEECC
Confidence            1  1234567899999998876666666655432  345566643

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.80  E-value=0.028  Score=50.43  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D  126 (340)
                      ..+|.|||+|.+|+.++..|+..|.   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            3589999999999999999999995   579998865

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.75  E-value=0.083  Score=49.32  Aligned_cols=91  Identities=11%  Similarity=0.088  Sum_probs=55.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ..+|.|||+|.+|..++..|...|.. ++.++|.+.                   .+.+.    +.+..-...+      
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~-------------------~~~~~----a~~~G~~~~~------   83 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISK----AVDLGIIDEG------   83 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHH----HHHTTSCSEE------
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH-------------------HHHHH----HHHCCCcchh------
Confidence            36899999999999999999999974 788877542                   11222    1222110010      


Q ss_pred             CCcccHHh-hcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEE
Q 019513          172 LRTSNALE-ILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG  214 (340)
Q Consensus       172 ~~~~~~~~-~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~  214 (340)
                        ..+..+ .++++|+||.|+-.......+.++...  .+..+++.
T Consensus        84 --~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~  127 (314)
T 3ggo_A           84 --TTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQ  127 (314)
T ss_dssp             --ESCTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEEC
T ss_pred             --cCCHHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEEC
Confidence              012234 567889999888766555555555433  34445553

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.73  E-value=0.034  Score=52.95  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      ...++|+|||+|+.|...+..|.. .++.++.++|.+                   ..|++.+++.+... +.+.+..+ 
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~-------------------~~~a~~la~~~~~~-~g~~~~~~-  185 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD-------------------PLATAKLIANLKEY-SGLTIRRA-  185 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHTTC-TTCEEEEC-
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC-------------------HHHHHHHHHHHHhc-cCceEEEe-
Confidence            356789999999999999998754 578899998743                   23566666665432 24444332 


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                           .+..+.+.++|+|+.||-+.
T Consensus       186 -----~~~~eav~~aDiVi~aTps~  205 (350)
T 1x7d_A          186 -----SSVAEAVKGVDIITTVTADK  205 (350)
T ss_dssp             -----SSHHHHHTTCSEEEECCCCS
T ss_pred             -----CCHHHHHhcCCEEEEeccCC
Confidence                 23456778899999999874

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.73  E-value=0.039  Score=50.52  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   36 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLM   36 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            579999999999999999999996 68888754

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.72  E-value=0.036  Score=52.46  Aligned_cols=76  Identities=16%  Similarity=0.228  Sum_probs=50.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC---CCceEEE
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN---STVHIIE  167 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln---p~v~i~~  167 (340)
                      ...+|.|+|+|.+|+.+|..|+..|+ +++.|+|-+                   ..|++..+..|....   +...+..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~   80 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM-------------------EDKLKGEMMDLEHGSLFLHTAKIVS   80 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC-------------------HHHHHHHHHHHHHHGGGSCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC-------------------HHHHHHHHHHhhhhhhcccCCeEEE
Confidence            45789999999999999999999997 689998742                   234444444444432   2333332


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCC
Q 019513          168 HREALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      ..      +. +.++++|+||.+...
T Consensus        81 t~------d~-~~~~daDiVIitaG~   99 (330)
T 3ldh_A           81 GK------DY-SVSAGSKLVVITAGA   99 (330)
T ss_dssp             ES------SS-CSCSSCSEEEECCSC
T ss_pred             cC------CH-HHhCCCCEEEEeCCC
Confidence            21      11 227899999987654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.71  E-value=0.031  Score=52.71  Aligned_cols=76  Identities=21%  Similarity=0.278  Sum_probs=52.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC---CCceEEE
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN---STVHIIE  167 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln---p~v~i~~  167 (340)
                      +..||.|+|+|.+|..++..|+..|. .+|.|+|-+                   ..|++..+..|....   ..+++..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~i~~   68 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLSNALPFTSPKKIYS   68 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC-------------------chHhHHHHHHHHHHHHhcCCeEEEE
Confidence            34689999999999999999998884 578888742                   235555444454432   3444443


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                           .   ..+.++++|+||.+...+
T Consensus        69 -----~---~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A           69 -----A---EYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             -----C---CGGGGGGCSEEEECCCCC
T ss_pred             -----C---CHHHhCCCCEEEEcCCCC
Confidence                 1   134478999999887654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.71  E-value=0.095  Score=47.46  Aligned_cols=89  Identities=11%  Similarity=0.138  Sum_probs=54.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|.|||+|.+|..++..|+..|.. ++.++|.+.                   .+.+.    +.+..-...+       
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~-------------------~~~~~----~~~~g~~~~~-------   51 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISK----AVDLGIIDEG-------   51 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHH----HHHTTSCSEE-------
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH-------------------HHHHH----HHHCCCcccc-------
Confidence            4799999999999999999999963 677776432                   12222    2222110000       


Q ss_pred             CcccHHhhcc-cCcEEEEcCCChhhHHHHHHHHHH--cCCcEEE
Q 019513          173 RTSNALEILS-QYEIVVDATDNAPSRYMISDCCVV--LGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l~-~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~  213 (340)
                       ..+..+.+. ++|+||.|+-.......+.++...  .+..+++
T Consensus        52 -~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           52 -TTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             -ESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -cCCHHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             012234567 899999998876666666655432  3444554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.71  E-value=0.052  Score=50.71  Aligned_cols=34  Identities=29%  Similarity=0.298  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D  126 (340)
                      ..+|.|||+|.+|+.++..|+.+|+   ..++++|.+
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            3579999999999999999999995   578887743

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.70  E-value=0.033  Score=51.68  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +...+|.|||+|.+|..++.+|+..|. +++++|.+.
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            345789999999999999999999996 588887553

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.70  E-value=0.081  Score=49.50  Aligned_cols=117  Identities=10%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHH--cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAA--CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~--aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      .+++++|+|.|+ |++|+.+++.|+.  .|. ++.++|...-.. ......   ...++...         .+ +...+.
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~-~~~~~~---~~~~~~~~---------~~-~~~~~~   71 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNT-LFSNNR---PSSLGHFK---------NL-IGFKGE   71 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC-----------CCCCCCGG---------GG-TTCCSE
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCccc-cccccc---hhhhhhhh---------hc-cccCce
Confidence            456789999975 7799999999999  775 577776532100 000000   00111110         01 111234


Q ss_pred             EecccCCc-ccHHhh-cccCcEEEEcCCChh-------h--------HHHHHHHHHHcCCcEEEEeecCcee
Q 019513          167 EHREALRT-SNALEI-LSQYEIVVDATDNAP-------S--------RYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       167 ~~~~~~~~-~~~~~~-l~~~DlVi~~tD~~~-------~--------r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      .+..+++. +....+ ..++|+||.+.....       .        -..+.++|.+.+.++|+.++.+.+|
T Consensus        72 ~~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg  143 (362)
T 3sxp_A           72 VIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYG  143 (362)
T ss_dssp             EEECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGC
T ss_pred             EEECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhC
Confidence            44445553 333444 578999998875322       1        1235577788888898887765555

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.69  E-value=0.037  Score=49.49  Aligned_cols=84  Identities=18%  Similarity=0.189  Sum_probs=57.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC-ceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST-VHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~-v~i~~  167 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.++. .++..
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARS-------------------KQNLEKVHDEIMRSNKHVQEPIV   63 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSCCCEE
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhccccCcceE
Confidence            467788999986 6799999999999997 67777643                   23566777777777655 45556


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD~  193 (340)
                      +..+++.. ....+       +...|++|.+...
T Consensus        64 ~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAM   97 (250)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             EeccCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            66666642 22222       2468999987653

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.69  E-value=0.025  Score=51.64  Aligned_cols=31  Identities=32%  Similarity=0.376  Sum_probs=27.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|.|||+|.+|+.++..|+..|. ++.++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~   32 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVF   32 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            69999999999999999999996 68888754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.67  E-value=0.017  Score=55.29  Aligned_cols=78  Identities=14%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .++.++|+|+|+|++|..+++.|...|. +++++|.+.                   .|.+.+.+.   +...+.+..  
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~-------------------~~~~~~~~~---~g~~~~~~~--  217 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNH-------------------KRLQYLDDV---FGGRVITLT--  217 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHH---TTTSEEEEE--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH-------------------HHHHHHHHh---cCceEEEec--
Confidence            5889999999999999999999999998 788887432                   122222211   221211111  


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                        ...++..+.+.++|+||+|+...
T Consensus       218 --~~~~~l~~~~~~~DvVi~~~g~~  240 (369)
T 2eez_A          218 --ATEANIKKSVQHADLLIGAVLVP  240 (369)
T ss_dssp             --CCHHHHHHHHHHCSEEEECCC--
T ss_pred             --CCHHHHHHHHhCCCEEEECCCCC
Confidence              12234556678899999998765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.67  E-value=0.024  Score=51.86  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            479999999999999999999995 688888654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.66  E-value=0.02  Score=53.70  Aligned_cols=74  Identities=19%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC---CCceEEEecc
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN---STVHIIEHRE  170 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln---p~v~i~~~~~  170 (340)
                      +|.|||+|.+|+.++..|+..|. +++.++|.+.                   .|++..+..+....   +...+..   
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~i~~---   59 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK-------------------KRAEGDALDLIHGTPFTRRANIYA---   59 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHGGGSCCCEEEE---
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCcEEEe---
Confidence            79999999999999999999985 4788887542                   23333333333222   2333332   


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                        +  + .+.++++|+||.|+..+.
T Consensus        60 --~--d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A           60 --G--D-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             --C--C-GGGGTTCSEEEECCCCCC
T ss_pred             --C--C-HHHhCCCCEEEEccCCCC
Confidence              1  1 234688999999987533

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.66  E-value=0.019  Score=53.83  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      ..||.|||+|.+|.+++..|+..|. ++|.|+|-|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3689999999999999999999885 679999854

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.61  E-value=0.029  Score=52.72  Aligned_cols=74  Identities=16%  Similarity=0.177  Sum_probs=50.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh----CCCceEEEec
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI----NSTVHIIEHR  169 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l----np~v~i~~~~  169 (340)
                      +|.|+|+|.+|+.++..|+..|+ .++.|+|-+.                   .|++..+..|...    ...+++....
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~-------------------~k~~g~a~DL~~~~~~~~~~~~v~~~~   62 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD-------------------GMPQGKALDMRESSPIHGFDTRVTGTN   62 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch-------------------HHHHHHHHHHhccccccCCCcEEEECC
Confidence            69999999999999999999997 5899988532                   2344433444432    2245554321


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                             ..+.++++|+||.+...+
T Consensus        63 -------~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X           63 -------DYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             -------SSGGGTTCSEEEECCCC-
T ss_pred             -------CHHHhCCCCEEEECCCCC
Confidence                   134578899999887654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.61  E-value=0.065  Score=53.16  Aligned_cols=125  Identities=10%  Similarity=0.080  Sum_probs=63.5

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEE
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHII  166 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~  166 (340)
                      ...+..++|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+....  .  +-|-.-+....+.+..+ .+++-+.
T Consensus        10 ~~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~~~~~~~l~~~~--~--~~gi~~~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           10 HHHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRSREKTEEVIAEN--P--GKKLVPYYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             -----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSHHHHHHHHHHS--T--TSCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             ccccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHhhC--C--CCCeEEeCCHHHHHhCCCCCCEEEE
Confidence            345778899999999999999999999996 5888886532111111110  0  00111111223333332 2444444


Q ss_pred             Eeccc-CCccc---HHhhcccCcEEEEcCCChhh-HHHHHHHHHHcCCcEEEEeec
Q 019513          167 EHREA-LRTSN---ALEILSQYEIVVDATDNAPS-RYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       167 ~~~~~-~~~~~---~~~~l~~~DlVi~~tD~~~~-r~~i~~~~~~~~~p~i~~~~~  217 (340)
                      ..+.. ...+-   ....+++-++||+++-.... -..+.+.+...++.++.+...
T Consensus        85 ~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~  140 (480)
T 2zyd_A           85 MVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVS  140 (480)
T ss_dssp             CSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccc
Confidence            44331 11111   22233445688877665432 223455555567777765443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.60  E-value=0.022  Score=53.39  Aligned_cols=97  Identities=16%  Similarity=0.094  Sum_probs=55.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh-hCCCceEEEeccc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS-INSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~-lnp~v~i~~~~~~  171 (340)
                      ..+|.|||+|.+|+.++..|+++|. .++++|.+.                   .|++.+.+.-.. ..|....   ...
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~~-------------------~~~~~l~~~g~~~~~~~~~~---~~~   70 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGE-EVILWARRK-------------------EIVDLINVSHTSPYVEESKI---TVR   70 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH-------------------HHHHHHHHHSCBTTBTTCCC---CSE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH-------------------HHHHHHHHhCCcccCCCCee---eEE
Confidence            4689999999999999999999994 678776432                   123332221000 0011110   001


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .. .+..+ +.++|+||.|+-+...+..+..... .+.++|+..
T Consensus        71 ~~-~~~~~-~~~aDvVil~vk~~~~~~v~~~l~~-~~~~vv~~~  111 (335)
T 1z82_A           71 AT-NDLEE-IKKEDILVIAIPVQYIREHLLRLPV-KPSMVLNLS  111 (335)
T ss_dssp             EE-SCGGG-CCTTEEEEECSCGGGHHHHHTTCSS-CCSEEEECC
T ss_pred             Ee-CCHHH-hcCCCEEEEECCHHHHHHHHHHhCc-CCCEEEEEe
Confidence            11 12234 6778999988876555555543322 456677644

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.60  E-value=0.075  Score=52.40  Aligned_cols=96  Identities=11%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ..++|+|+|.|-+|..+|+.|-. + .++.+++.|.                   .|++.+++.|    |++.|  ...+
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~d~-------------------~r~~~la~~l----~~~~V--i~GD  286 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIERNL-------------------QRAEKLSEEL----ENTIV--FCGD  286 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTT-T-SEEEEEESCH-------------------HHHHHHHHHC----TTSEE--EESC
T ss_pred             cccEEEEEcchHHHHHHHHHhhh-c-CceEEEecCH-------------------HHHHHHHHHC----CCceE--Eecc
Confidence            35789999999999999999854 3 5788887653                   3555555544    45443  3333


Q ss_pred             CCccc--HHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          172 LRTSN--ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       172 ~~~~~--~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      .+..+  ..+-+.++|++|.+|++-+.-.+..-+|+++|.+-+-+
T Consensus       287 ~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          287 AADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             TTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             ccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccc
Confidence            33322  23346889999999999999999999999999886543

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.58  E-value=0.044  Score=50.47  Aligned_cols=109  Identities=12%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |++++|+|.|+ |++|+.+++.|+..|. ++.++|.+.-              ..   ..    ..+..+.....+..+.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~--------------~~---~~----~~~~~~~~~~~~~~~~   58 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSG--------------EF---AS----WRLKELGIENDVKIIH   58 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCS--------------TT---TT----HHHHHTTCTTTEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCc--------------cc---cc----ccHhhccccCceeEEE
Confidence            35678999997 7899999999999994 6777764321              00   00    1223332222345555


Q ss_pred             ccCCc-ccHHhhccc--CcEEEEcCCChh---------h--------HHHHHHHHHHcC--CcEEEEeecCcee
Q 019513          170 EALRT-SNALEILSQ--YEIVVDATDNAP---------S--------RYMISDCCVVLG--KPLVSGAALGLEG  221 (340)
Q Consensus       170 ~~~~~-~~~~~~l~~--~DlVi~~tD~~~---------~--------r~~i~~~~~~~~--~p~i~~~~~g~~G  221 (340)
                      .+++. +...+.++.  .|+||.+.....         .        -..+.++|.+.+  ..+|+.++...+|
T Consensus        59 ~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg  132 (345)
T 2z1m_A           59 MDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFG  132 (345)
T ss_dssp             CCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGC
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcC
Confidence            55553 334445554  599998865321         0        122446666666  4688777654444

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=95.58  E-value=0.07  Score=52.51  Aligned_cols=125  Identities=12%  Similarity=0.057  Sum_probs=66.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHc---CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAAC---GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~a---Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      .++.++|+|.|+ |++|+++++.|+..   | .++.+++...-....+.|..    ..+...........-....+  .+
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~--~v  142 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRLE----KTFDSGDPELLRHFKELAAD--RL  142 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHHH----GGGCSSCHHHHHHHHHHHTT--TE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHHH----HHHHhcchhhhhhhhhhccC--ce
Confidence            356789999996 66999999999998   4 46777764321110000000    00000001111111111122  34


Q ss_pred             EEecccCC-------cccHHhhcccCcEEEEcCCCh-------------hhHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          166 IEHREALR-------TSNALEILSQYEIVVDATDNA-------------PSRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       166 ~~~~~~~~-------~~~~~~~l~~~DlVi~~tD~~-------------~~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      ..+..+++       .+...+++++.|+||.+....             ..-..+-++|.+.++ .+|..++.+.+|
T Consensus       143 ~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~  219 (478)
T 4dqv_A          143 EVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGA  219 (478)
T ss_dssp             EEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGT
T ss_pred             EEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcC
Confidence            44444553       334556678899999886531             112235567777764 788877655443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.58  E-value=0.043  Score=48.14  Aligned_cols=33  Identities=12%  Similarity=0.325  Sum_probs=28.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+|+|||+|.+|..++..|+..|. ++.++|.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3579999999999999999999996 68887753

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.53  E-value=0.04  Score=49.70  Aligned_cols=83  Identities=18%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+....+...+..+
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   66 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRR-------------------EENVNETIKEIRAQYPDAILQPV   66 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEEE
Confidence            467788999986 6799999999999996 57776643                   23566777788888888777777


Q ss_pred             cccCCccc-HHhh---cccCcEEEEcCC
Q 019513          169 REALRTSN-ALEI---LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~~~~---l~~~DlVi~~tD  192 (340)
                      ..+++... ..++   +...|++|.+..
T Consensus        67 ~~D~~~~~~~~~~~~~~g~id~lv~nAg   94 (267)
T 3t4x_A           67 VADLGTEQGCQDVIEKYPKVDILINNLG   94 (267)
T ss_dssp             ECCTTSHHHHHHHHHHCCCCSEEEECCC
T ss_pred             ecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            77776432 2233   347899998865

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.53  E-value=0.053  Score=48.24  Aligned_cols=81  Identities=21%  Similarity=0.340  Sum_probs=54.4

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |++++|+|.|+ ||+|.++++.|+..|...+.++|.+.               +    +  ...+.+.+..+...+..+.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~---------------~----~--~~~~~l~~~~~~~~~~~~~   61 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE---------------N----P--TALAELKAINPKVNITFHT   61 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC---------------C----H--HHHHHHHHHCTTSEEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc---------------h----H--HHHHHHHHhCCCceEEEEE
Confidence            56788999985 67999999999999987688876432               0    0  1233455555555666666


Q ss_pred             ccCCcc--cHHhhc-------ccCcEEEEcCC
Q 019513          170 EALRTS--NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~--~~~~~l-------~~~DlVi~~tD  192 (340)
                      .+++..  ...+++       .+.|+||.+..
T Consensus        62 ~D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   93 (254)
T 1sby_A           62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EecCCChHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            666643  233333       37899998764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.53  E-value=0.12  Score=46.78  Aligned_cols=106  Identities=13%  Similarity=0.177  Sum_probs=63.2

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCc-ccHHHHHHHHHhhCCCceEEEecc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQ-SKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~-~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .++|+|.|+ |.+|+.+++.|+..| .++.+++.+.-.           .  -.. .|++.+ +.+.  .+.+++  +..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~-----------~--~~~~~~~~~~-~~l~--~~~v~~--v~~   62 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTIT-----------A--ANPETKEELI-DNYQ--SLGVIL--LEG   62 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCC-----------S--SCHHHHHHHH-HHHH--HTTCEE--EEC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcc-----------c--CChHHHHHHH-HHHH--hCCCEE--EEe
Confidence            467999997 789999999999999 457766543200           0  000 122222 1222  234544  334


Q ss_pred             cCC-cccHHhhcccCcEEEEcCCCh--hhHHHHHHHHHHcC-CcEEEEeec
Q 019513          171 ALR-TSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLG-KPLVSGAAL  217 (340)
Q Consensus       171 ~~~-~~~~~~~l~~~DlVi~~tD~~--~~r~~i~~~~~~~~-~p~i~~~~~  217 (340)
                      +++ .+.....++++|+||.+....  .....+-++|.+.+ ++.+-.+..
T Consensus        63 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~  113 (307)
T 2gas_A           63 DINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEF  113 (307)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEECSCC
T ss_pred             CCCCHHHHHHHHhCCCEEEECCcccccccHHHHHHHHHhcCCceEEeeccc
Confidence            444 345667788999999987653  33345667788877 554433333

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.53  E-value=0.036  Score=50.68  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            579999999999999999999995 688888654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.52  E-value=0.05  Score=48.08  Aligned_cols=84  Identities=20%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCceEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHII  166 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v~i~  166 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+++.. +.+.+.
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~   69 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRT-------------------EASLAEVSDQIKSAGQPQPLII   69 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTSCCCEEE
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecC-------------------HHHHHHHHHHHHhcCCCCceEE
Confidence            3578889999986 6799999999999996 57777643                   235566666676665 455555


Q ss_pred             EecccCCc-ccHHh-------hcccCcEEEEcCC
Q 019513          167 EHREALRT-SNALE-------ILSQYEIVVDATD  192 (340)
Q Consensus       167 ~~~~~~~~-~~~~~-------~l~~~DlVi~~tD  192 (340)
                      ..+...+. +....       .+...|+||.+..
T Consensus        70 ~~d~d~~~~~~~~~~~~~~~~~~g~id~lv~nAg  103 (247)
T 3i1j_A           70 ALNLENATAQQYRELAARVEHEFGRLDGLLHNAS  103 (247)
T ss_dssp             ECCTTTCCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EeccccCCHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            55543343 22222       2247899998765

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.51  E-value=0.082  Score=48.72  Aligned_cols=107  Identities=21%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEecc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~  170 (340)
                      +++|+|.|+ |++|+.+++.|+..|. ++.++|.+.-                   +.....+.+... .+.+  ..+..
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~--~~~~~   62 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVN-------------------SKREAIARIEKITGKTP--AFHET   62 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSS-------------------SCTHHHHHHHHHHSCCC--EEECC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCc-------------------chHHHHHHHHhhcCCCc--eEEEe
Confidence            468999985 7799999999999995 4666653321                   111222333332 3333  34444


Q ss_pred             cCCc-ccHHhhcc--cCcEEEEcCCChh-----------------hHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          171 ALRT-SNALEILS--QYEIVVDATDNAP-----------------SRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       171 ~~~~-~~~~~~l~--~~DlVi~~tD~~~-----------------~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +++. +...+.++  +.|+||.+.....                 .-..+-+++.+.+. .+|+.++...+|
T Consensus        63 Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g  134 (341)
T 3enk_A           63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYG  134 (341)
T ss_dssp             CTTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBC
T ss_pred             ecCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEec
Confidence            5543 44455565  7899998875321                 11124456777664 577766654444

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.51  E-value=0.021  Score=54.42  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=59.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH--hhCCCceEEEecc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR--SINSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~--~lnp~v~i~~~~~  170 (340)
                      ..+|.|||+|.+|+.+|..|+..|. .++++|.+.-                   +++.+.+.-.  ..-|.+.+   +.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~-------------------~~~~i~~~~~~~~~l~g~~l---~~   85 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESD-------------------HVDEMQAEGVNNRYLPNYPF---PE   85 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHH-------------------HHHHHHHHSSBTTTBTTCCC---CT
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHH-------------------HHHHHHHcCCCcccCCCCcc---CC
Confidence            3689999999999999999999994 5888876431                   1222211100  00122211   11


Q ss_pred             cCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEE
Q 019513          171 ALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG  214 (340)
Q Consensus       171 ~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~  214 (340)
                      .+. ..+..+.++++|+||.|+-....+..+.+....  .+.++|+.
T Consensus        86 ~i~~t~d~~ea~~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A           86 TLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             TEEEESCHHHHHTTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             CeEEECCHHHHHhcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            111 123455678899999998776666666655433  24556664

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.50  E-value=0.029  Score=52.61  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=28.3

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..+|+|||+|.+|+.++..|+++|. .++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4689999999999999999999995 6888764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.50  E-value=0.023  Score=52.77  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=28.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|+|+|+|++|+.++..|+++|. .++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence            579999999999999999999995 68888754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.49  E-value=0.12  Score=46.93  Aligned_cols=100  Identities=18%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEecc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~  170 (340)
                      .++|+|.|+ |.+|+.+++.|...| .++.+++.+.-..    +         ...|++    .+..+ .+.+++  +..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~----~---------~~~~~~----~~~~l~~~~v~~--v~~   63 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTAS----S---------NSEKAQ----LLESFKASGANI--VHG   63 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTT----T---------THHHHH----HHHHHHTTTCEE--ECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccc----c---------CHHHHH----HHHHHHhCCCEE--EEe
Confidence            367999997 789999999999999 4566665432000    0         011222    22222 234544  444


Q ss_pred             cCC-cccHHhhcccCcEEEEcCCChh--hHHHHHHHHHHcC-CcEE
Q 019513          171 ALR-TSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLG-KPLV  212 (340)
Q Consensus       171 ~~~-~~~~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~-~p~i  212 (340)
                      +++ .+...+.++++|+||.+.....  ....+-++|.+.+ ++.+
T Consensus        64 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~  109 (308)
T 1qyc_A           64 SIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRF  109 (308)
T ss_dssp             CTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEE
T ss_pred             ccCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHhcCCCceE
Confidence            444 3456677889999999987532  2344667788877 6544

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.49  E-value=0.07  Score=48.19  Aligned_cols=83  Identities=24%  Similarity=0.370  Sum_probs=56.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+++......+..+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   88 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTV-------------------GNIEELAAECKSAGYPGTLIPY   88 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCSSEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHHHHHHHHHhcCCCceEEEE
Confidence            477889999985 6799999999999996 577766431                   2445556666665544556666


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ....++       .+.|+||.+..
T Consensus        89 ~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           89 RCDLSNEEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             EecCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            6666642 222333       37899998765

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.49  E-value=0.1  Score=46.93  Aligned_cols=97  Identities=13%  Similarity=0.024  Sum_probs=59.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ..+|+|.|+|.+|+.+++.|...|. +++.++.+.                   .+...    +..  +.  ++.+..++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~----~~~--~~--~~~~~~D~   56 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP-------------------DQMEA----IRA--SG--AEPLLWPG   56 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG-------------------GGHHH----HHH--TT--EEEEESSS
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhhhh----Hhh--CC--CeEEEecc
Confidence            3689999999999999999999985 566665321                   12222    111  23  33444444


Q ss_pred             CcccHHhhcccCcEEEEcCCChh----hHHHHHHHHHH--cC-CcEEEEeecCcee
Q 019513          173 RTSNALEILSQYEIVVDATDNAP----SRYMISDCCVV--LG-KPLVSGAALGLEG  221 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~----~r~~i~~~~~~--~~-~p~i~~~~~g~~G  221 (340)
                      +.-   + +.++|+||.+.....    ....+-+++.+  .+ ..+|..++.+.+|
T Consensus        57 ~d~---~-~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg  108 (286)
T 3ius_A           57 EEP---S-LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYG  108 (286)
T ss_dssp             SCC---C-CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGC
T ss_pred             ccc---c-cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecC
Confidence            431   2 788999999885432    12335556666  44 4577777665554

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.48  E-value=0.047  Score=49.69  Aligned_cols=37  Identities=32%  Similarity=0.421  Sum_probs=28.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .++.++|+|.|+ |.+|+.+++.|...|. ++.++|...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            356789999998 7799999999999995 677776543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.48  E-value=0.029  Score=50.89  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=26.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|+.++..|+. |. +++++|.+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~   32 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRT   32 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCC
Confidence            379999999999999999999 86 58887743

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.47  E-value=0.029  Score=50.36  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=27.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|..++..|...| ..+.++|.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEECCC
Confidence            47999999999999999999998 467887753

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.47  E-value=0.037  Score=51.22  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            579999999999999999999996 588888653

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.46  E-value=0.026  Score=52.66  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=25.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIV  123 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lv  123 (340)
                      ...+|+|||+|.+|+.++..|+.+|. .++++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            45679999999999999999999995 56665

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.46  E-value=0.069  Score=49.20  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=59.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|.|+ |.+|+.+++.|+..| .++.++|.+.-...++                       ..  +.+  +.+..+++
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~l-----------------------~~--~~~--~~~~~Dl~   66 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQRL-----------------------AY--LEP--ECRVAEML   66 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGGGG-----------------------GG--GCC--EEEECCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhhhh-----------------------cc--CCe--EEEEecCC
Confidence            7999996 779999999999999 4688877542111100                       00  123  33344444


Q ss_pred             c-ccHHhhcccCcEEEEcCCChh---------------hHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          174 T-SNALEILSQYEIVVDATDNAP---------------SRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       174 ~-~~~~~~l~~~DlVi~~tD~~~---------------~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      . +...+.++++|+||.+.....               .-..+-++|.+.++ .+|..++.+.+|
T Consensus        67 d~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~  131 (342)
T 2x4g_A           67 DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMP  131 (342)
T ss_dssp             CHHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSC
T ss_pred             CHHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhC
Confidence            3 445567788999998865321               11235567777774 678777655544

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.45  E-value=0.064  Score=48.17  Aligned_cols=83  Identities=16%  Similarity=0.296  Sum_probs=56.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+..++..+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   69 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS-------------------EGLEASKAAVLETAPDAEVLTT   69 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhcCCceEEEE
Confidence            467888999985 5799999999999996 577766431                   2445556666666555566666


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ....++       ...|+||.+..
T Consensus        70 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  101 (267)
T 1iy8_A           70 VADVSDEAQVEAYVTATTERFGRIDGFFNNAG  101 (267)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6666642 233333       36899998764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.45  E-value=0.045  Score=49.46  Aligned_cols=32  Identities=28%  Similarity=0.220  Sum_probs=28.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            69999999999999999999996 789988654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.42  E-value=0.092  Score=47.45  Aligned_cols=87  Identities=14%  Similarity=-0.028  Sum_probs=53.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|.|||+|.+|+.++..|...|. ++.++|.+.                   .+++.    +.+..-...+        .
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~-------------------~~~~~----~~~~g~~~~~--------~   49 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------STCEK----AVERQLVDEA--------G   49 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHH----HHHTTSCSEE--------E
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHH----HHhCCCCccc--------c
Confidence            69999999999999999999997 688876432                   12222    2222110011        1


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEE
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG  214 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~  214 (340)
                      .+..+. .++|+||.|+-....+..+.++...  .+..+++.
T Consensus        50 ~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv~~   90 (279)
T 2f1k_A           50 QDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDV   90 (279)
T ss_dssp             SCGGGG-TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             CCHHHh-CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence            122344 6789999998766555556555432  24556664

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.41  E-value=0.15  Score=46.41  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=61.4

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEecc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~  170 (340)
                      .++|+|.|+ |.+|+.+++.|...| .++.+++.+.-              .....|++.    +..+ .+.+++  +..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~--------------~~~~~~~~~----~~~~~~~~~~~--~~~   62 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEV--------------VSNIDKVQM----LLYFKQLGAKL--IEA   62 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCC--------------SSCHHHHHH----HHHHHTTTCEE--ECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCc--------------ccchhHHHH----HHHHHhCCeEE--EeC
Confidence            367999996 789999999999999 45777654320              000112222    2222 334443  444


Q ss_pred             cCC-cccHHhhcccCcEEEEcCCCh------hhHHHHHHHHHHcC-CcEE
Q 019513          171 ALR-TSNALEILSQYEIVVDATDNA------PSRYMISDCCVVLG-KPLV  212 (340)
Q Consensus       171 ~~~-~~~~~~~l~~~DlVi~~tD~~------~~r~~i~~~~~~~~-~p~i  212 (340)
                      +++ ++...+.++++|+||.+....      .....+-++|.+.+ +..+
T Consensus        63 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~  112 (313)
T 1qyd_A           63 SLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRF  112 (313)
T ss_dssp             CSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEE
T ss_pred             CCCCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceE
Confidence            444 345667788999999987643      33445667888887 5533

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.38  E-value=0.14  Score=47.46  Aligned_cols=107  Identities=14%  Similarity=0.121  Sum_probs=60.1

Q ss_pred             HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      ...++.++|+|.|+ |.+|+.+++.|...|. ++.++|...-..   .+.                   +..+.....+.
T Consensus        22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---~~~-------------------~~~~~~~~~~~   78 (343)
T 2b69_A           22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFFTGR---KRN-------------------VEHWIGHENFE   78 (343)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCC---GGG-------------------TGGGTTCTTEE
T ss_pred             ccccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCCccc---hhh-------------------hhhhccCCceE
Confidence            34466789999998 7799999999999994 677776432100   000                   00010111233


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCCcEEEEeecCcee
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      .+..++...    .+.++|+||.+......                 -..+-++|.+.++.+|..++.+.+|
T Consensus        79 ~~~~D~~~~----~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g  146 (343)
T 2b69_A           79 LINHDVVEP----LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG  146 (343)
T ss_dssp             EEECCTTSC----CCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGB
T ss_pred             EEeCccCCh----hhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhC
Confidence            333333322    25678999988653211                 1124467777777888877765554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.37  E-value=0.042  Score=50.20  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=28.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|..++..|+..|. ++.++|.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            479999999999999999999996 58888754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.37  E-value=0.015  Score=49.71  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~   34 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS   34 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            469999999999999999999998 59999954

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.36  E-value=0.059  Score=49.94  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|.|||+|.+|+.++..|+..|. +++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            69999999999999999999995 6888875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.36  E-value=0.072  Score=49.57  Aligned_cols=32  Identities=34%  Similarity=0.462  Sum_probs=28.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      +|.|||+|.+|+.++..|+..|. .++.++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            79999999999999999999764 469999864

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.34  E-value=0.029  Score=51.58  Aligned_cols=96  Identities=19%  Similarity=0.271  Sum_probs=58.3

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCccc--ccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           93 KSSILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHDVVE--LNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D~Ve--~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .-||+|+|+ |.+|..+++.+.. .|+.-..++|.+.-.  -.++...       .|..+            ..+.+  +
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~-------~g~~~------------~~v~~--~   63 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGEL-------AGAGK------------TGVTV--Q   63 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCS-------SSSSC------------CSCCE--E
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHH-------cCCCc------------CCcee--c
Confidence            358999999 9999999998874 454333466643210  0111100       11111            01111  1


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                            ++..+.+.++|+|||++. +..-..+-.+|.++|+|+|.+.+
T Consensus        64 ------~dl~~~l~~~DvVIDft~-p~~~~~~~~~a~~~G~~vVigTt  104 (273)
T 1dih_A           64 ------SSLDAVKDDFDVFIDFTR-PEGTLNHLAFCRQHGKGMVIGTT  104 (273)
T ss_dssp             ------SCSTTTTTSCSEEEECSC-HHHHHHHHHHHHHTTCEEEECCC
T ss_pred             ------CCHHHHhcCCCEEEEcCC-hHHHHHHHHHHHhCCCCEEEECC
Confidence                  222345568999999994 66667788899999999987654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.34  E-value=0.13  Score=48.62  Aligned_cols=102  Identities=16%  Similarity=0.071  Sum_probs=62.2

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.++|+|.|+ |.+|+.+++.|+..|. ++.++|.+.-...           .   .           ..+.++  .+..
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-----------~---~-----------~~~~v~--~~~~   79 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHM-----------T---E-----------DMFCDE--FHLV   79 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSS-----------C---G-----------GGTCSE--EEEC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCccch-----------h---h-----------ccCCce--EEEC
Confidence            3468999998 7799999999999994 6887775421100           0   0           012333  3333


Q ss_pred             cCCc-ccHHhhcccCcEEEEcCCChh----------h--------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          171 ALRT-SNALEILSQYEIVVDATDNAP----------S--------RYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       171 ~~~~-~~~~~~l~~~DlVi~~tD~~~----------~--------r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +++. +...+.++++|+||.+.....          .        -..+.++|.+.++ .+|..++.+.+|
T Consensus        80 Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~  150 (379)
T 2c5a_A           80 DLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYP  150 (379)
T ss_dssp             CTTSHHHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSC
T ss_pred             CCCCHHHHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeC
Confidence            4443 345566788999998865321          0        1134566777776 677766655444

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.34  E-value=0.016  Score=54.14  Aligned_cols=33  Identities=36%  Similarity=0.443  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+|+|+|+|++|+.++..|+++|. .++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            589999999999999999999994 788887653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.34  E-value=0.029  Score=55.19  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=30.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +.++|+|+|+|++|..++..|+..|. +++++|.+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCH
Confidence            45789999999999999999999995 599988653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.31  E-value=0.073  Score=47.23  Aligned_cols=83  Identities=16%  Similarity=0.183  Sum_probs=56.3

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..+++++|+|.|+ ||+|..+++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+  ++..
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~   62 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADIN-------------------AEAAEAVAKQIVADGG--TAIS   62 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--EEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCC-------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            3577889999986 67999999999999964 7777643                   2355666666666544  4445


Q ss_pred             ecccCCcc-cHHhhc-------ccCcEEEEcCCC
Q 019513          168 HREALRTS-NALEIL-------SQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~-~~~~~l-------~~~DlVi~~tD~  193 (340)
                      +..+++.. ....++       .+.|+||.+..-
T Consensus        63 ~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           63 VAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            55556542 222332       378999988653

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.31  E-value=0.094  Score=49.44  Aligned_cols=34  Identities=35%  Similarity=0.499  Sum_probs=30.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  212 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDI  212 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4678999999999999999999999988888774

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.31  E-value=0.078  Score=47.69  Aligned_cols=83  Identities=16%  Similarity=0.254  Sum_probs=59.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+..++..+
T Consensus         5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   64 (265)
T 3lf2_A            5 DLSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARD-------------------GERLRAAESALRQRFPGARLFAS   64 (265)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEEE
Confidence            467889999985 6799999999999996 47777643                   23566677777776776667777


Q ss_pred             cccCCccc-HHh-------hcccCcEEEEcCC
Q 019513          169 REALRTSN-ALE-------ILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~~~-------~l~~~DlVi~~tD  192 (340)
                      ..+++... ...       .+...|++|.+..
T Consensus        65 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg   96 (265)
T 3lf2_A           65 VCDVLDALQVRAFAEACERTLGCASILVNNAG   96 (265)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCSCSEEEECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            76766432 222       2346899998765

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.30  E-value=0.065  Score=50.27  Aligned_cols=74  Identities=19%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ..++|+|||+|+.|...+.+|... ++.++.++|.+                   ..|++.+++.+....  +.+. +  
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-------------------~~~a~~la~~~~~~~--~~~~-~--  179 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR-------------------EKAAKKFVSYCEDRG--ISAS-V--  179 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHHHTT--CCEE-E--
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhcC--ceEE-E--
Confidence            467899999999999999999874 68899998743                   246777777766532  2222 1  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCCh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                          ++..+.+ ++|+|+.||-+.
T Consensus       180 ----~~~~e~v-~aDvVi~aTp~~  198 (322)
T 1omo_A          180 ----QPAEEAS-RCDVLVTTTPSR  198 (322)
T ss_dssp             ----CCHHHHT-SSSEEEECCCCS
T ss_pred             ----CCHHHHh-CCCEEEEeeCCC
Confidence                2345667 899999999763

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.26  E-value=0.12  Score=51.02  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+|.|||+|.+|+.++.+|+..|. ++.++|.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            3579999999999999999999997 58888754

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.26  E-value=0.025  Score=49.83  Aligned_cols=87  Identities=17%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEE-EeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGI-VDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~l-vD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|.|||+|.+|..++..|+..|. ++++ +|.+                   ..|++.+++.+   .  +.+.      
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~-------------------~~~~~~l~~~~---g--~~~~------   72 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQI-PAIIANSRG-------------------PASLSSVTDRF---G--ASVK------   72 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTC-------------------GGGGHHHHHHH---T--TTEE------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCC-------------------HHHHHHHHHHh---C--CCcc------
Confidence            589999999999999999999996 4555 4432                   22444443332   1  1111      


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                       ..+ .+.+.++|+||.|+.....+..+.++....++.+|+
T Consensus        73 -~~~-~~~~~~aDvVilavp~~~~~~v~~~l~~~~~~ivi~  111 (220)
T 4huj_A           73 -AVE-LKDALQADVVILAVPYDSIADIVTQVSDWGGQIVVD  111 (220)
T ss_dssp             -ECC-HHHHTTSSEEEEESCGGGHHHHHTTCSCCTTCEEEE
T ss_pred             -cCh-HHHHhcCCEEEEeCChHHHHHHHHHhhccCCCEEEE
Confidence             111 234678999999987544444443322112444554

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.26  E-value=0.051  Score=48.85  Aligned_cols=97  Identities=16%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             cCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.++|+|.| .|++|+.+++.|+..|. ++.++|.+.....                            .  ..+..+..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~----------------------------~--~~~~~~~~   50 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA----------------------------G--PNEECVQC   50 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC----------------------------C--TTEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc----------------------------C--CCCEEEEc
Confidence            346799999 57799999999999984 6777775432111                            1  12344444


Q ss_pred             cCCc-ccHHhhcccCcEEEEcCCC-----hhh--------HHHHHHHHHHcCC-cEEEEeecCc
Q 019513          171 ALRT-SNALEILSQYEIVVDATDN-----APS--------RYMISDCCVVLGK-PLVSGAALGL  219 (340)
Q Consensus       171 ~~~~-~~~~~~l~~~DlVi~~tD~-----~~~--------r~~i~~~~~~~~~-p~i~~~~~g~  219 (340)
                      +++. +...+++++.|+||.+...     +..        -..+.++|.+.+. .+|+.++...
T Consensus        51 Dl~d~~~~~~~~~~~D~vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~  114 (267)
T 3rft_A           51 DLADANAVNAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHT  114 (267)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             CCCCHHHHHHHHcCCCEEEECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHH
Confidence            5543 4455667788999987532     111        1235567777764 5777665433

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.25  E-value=0.053  Score=47.93  Aligned_cols=81  Identities=14%  Similarity=0.290  Sum_probs=53.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+....+.+  ..+
T Consensus         8 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~--~~~   65 (255)
T 1fmc_A            8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINA-------------------DAANHVVDEIQQLGGQA--FAC   65 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCCE--EEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHHhCCce--EEE
Confidence            477889999986 6799999999999996 577776421                   23444555666555443  344


Q ss_pred             cccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++. +...+.+       .+.|+||.+..
T Consensus        66 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag   97 (255)
T 1fmc_A           66 RCDITSEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            445553 2233333       37899998764

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.23  E-value=0.046  Score=51.09  Aligned_cols=74  Identities=24%  Similarity=0.243  Sum_probs=51.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC---CCceEEEec
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN---STVHIIEHR  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln---p~v~i~~~~  169 (340)
                      .||.|+|+|.+|..++..|+..|. ++|.|+|-+                   ..|++..+..|....   ..+++..  
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~k~~g~a~dl~~~~~~~~~~~v~~--   59 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLD-------------------RKLAQAHAEDILHATPFAHPVWVWA--   59 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHTTGGGSCCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhHhhcCCeEEEE--
Confidence            379999999999999999998874 679998743                   235555455555432   3445543  


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                         .  . .+.++++|+||.+...+
T Consensus        60 ---~--~-~~a~~~aD~Vii~ag~~   78 (310)
T 2xxj_A           60 ---G--S-YGDLEGARAVVLAAGVA   78 (310)
T ss_dssp             ---C--C-GGGGTTEEEEEECCCCC
T ss_pred             ---C--C-HHHhCCCCEEEECCCCC
Confidence               1  1 33478999999887654

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=95.19  E-value=0.15  Score=47.00  Aligned_cols=106  Identities=12%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ++|+|.|+ |++|+.+++.|+..|. ++.++|...       |           .......+.+.. .+.+  ..+..++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~-----------~~~~~~~~~l~~-~~~~--~~~~~Dl   59 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLS-------R-----------KGATDNLHWLSS-LGNF--EFVHGDI   59 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC-------S-----------TTHHHHHHHHHT-TCCC--EEEECCT
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeCCC-------c-----------cCchhhhhhhcc-CCce--EEEEcCC
Confidence            47999995 7799999999999994 577776421       0           011112223332 1223  3344455


Q ss_pred             Cc-ccHHhhccc--CcEEEEcCCChhh-----------------HHHHHHHHHHcCCc--EEEEeecCcee
Q 019513          173 RT-SNALEILSQ--YEIVVDATDNAPS-----------------RYMISDCCVVLGKP--LVSGAALGLEG  221 (340)
Q Consensus       173 ~~-~~~~~~l~~--~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~p--~i~~~~~g~~G  221 (340)
                      +. +...+.+++  +|+||.+......                 -..+-++|...++.  +|..++...+|
T Consensus        60 ~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g  130 (347)
T 1orr_A           60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYG  130 (347)
T ss_dssp             TCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGT
T ss_pred             CCHHHHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhC
Confidence            43 344556666  9999998764211                 12245677777754  88777665444

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.19  E-value=0.025  Score=52.82  Aligned_cols=74  Identities=14%  Similarity=0.131  Sum_probs=50.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +....+|.|||+|..|..++.+|... |+.++.++|.+.                   .|++.+++.+   ...+  .. 
T Consensus       132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~-------------------~~~~~l~~~~---~~~~--~~-  186 (312)
T 2i99_A          132 PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTK-------------------ENAEKFADTV---QGEV--RV-  186 (312)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSH-------------------HHHHHHHHHS---SSCC--EE-
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCH-------------------HHHHHHHHHh---hCCe--EE-
Confidence            34567899999999999999999987 888899987432                   2333333322   1111  11 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC
Q 019513          169 REALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                           ..+..+.++++|+|+.|+-.
T Consensus       187 -----~~~~~e~v~~aDiVi~atp~  206 (312)
T 2i99_A          187 -----CSSVQEAVAGADVIITVTLA  206 (312)
T ss_dssp             -----CSSHHHHHTTCSEEEECCCC
T ss_pred             -----eCCHHHHHhcCCEEEEEeCC
Confidence                 12345667889999988864

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.15  E-value=0.13  Score=47.46  Aligned_cols=105  Identities=10%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccc-cCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVEL-NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~-sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      .++.++|+|.|+ |++|+.+++.|+..| .++.++|.+.-.. .++.                       .+ +.  +..
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~l~-----------------------~~-~~--~~~   70 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRREHLK-----------------------DH-PN--LTF   70 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGSC-----------------------CC-TT--EEE
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccchhhHh-----------------------hc-CC--ceE
Confidence            355678999985 779999999999999 5678777542110 0000                       00 12  333


Q ss_pred             ecccCCc-ccHHhhccc--CcEEEEcCCChh--------------hHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          168 HREALRT-SNALEILSQ--YEIVVDATDNAP--------------SRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       168 ~~~~~~~-~~~~~~l~~--~DlVi~~tD~~~--------------~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +..+++. +...+.+++  +|+||.+.....              .-..+.++|...++ .+|..++.+.+|
T Consensus        71 ~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g  142 (333)
T 2q1w_A           71 VEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYG  142 (333)
T ss_dssp             EECCTTCHHHHHHHHHHHCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGC
T ss_pred             EEEeCCCHHHHHHHHhccCCcEEEECceecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhC
Confidence            3344443 334455555  888888764321              11235567777775 677766655444

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.14  E-value=0.04  Score=49.65  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=25.6

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|+|.|+ |.+|+.+++.|...|. ++++++.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            7999996 7799999999999984 6777765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.12  E-value=0.042  Score=50.70  Aligned_cols=34  Identities=18%  Similarity=0.171  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            4689999999999999999999996 688887653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.12  E-value=0.19  Score=45.21  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=60.3

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +|+|.|+ |.+|+.+++.|...+-.++.+++.+.-....+                         ..+.+++  +..+++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------------------------~~~~v~~--~~~D~~   54 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------------------------WRGKVSV--RQLDYF   54 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------------------------GBTTBEE--EECCTT
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------------------------hhCCCEE--EEcCCC
Confidence            6999996 77999999999988335677776543111000                         0123433  344444


Q ss_pred             -cccHHhhcccCcEEEEcCCChh-------hHHHHHHHHHHcCC-cEEEEeecC
Q 019513          174 -TSNALEILSQYEIVVDATDNAP-------SRYMISDCCVVLGK-PLVSGAALG  218 (340)
Q Consensus       174 -~~~~~~~l~~~DlVi~~tD~~~-------~r~~i~~~~~~~~~-p~i~~~~~g  218 (340)
                       ++...+.++++|+||.+.....       .-..+-++|.+.++ .+|..++.+
T Consensus        55 d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           55 NQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence             3456677889999999876421       12345667788875 477666543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=95.09  E-value=0.053  Score=51.00  Aligned_cols=31  Identities=23%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|+|.|+ |.+|+.+++.|...|.-++..+|.
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~   33 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHR   33 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence            6999995 679999999999998645666554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.09  E-value=0.022  Score=53.50  Aligned_cols=104  Identities=8%  Similarity=0.038  Sum_probs=58.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH--hhCCCceE
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR--SINSTVHI  165 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~--~lnp~v~i  165 (340)
                      .+|.|||+|.+|+.++..|+..|.      .+++++|.+.-              ..++.+++.+.+.-.  ...|...+
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~   74 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED--------------IGGKKLTEIINTQHENVKYLPGHKL   74 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB--------------SSSSBHHHHHHHHSCCTTTSTTCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh--------------hhhhHHHHHHHhcCcccccCCcccC
Confidence            479999999999999999999983      46888876431              011223333332100  00011100


Q ss_pred             EEecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEE
Q 019513          166 IEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG  214 (340)
Q Consensus       166 ~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~  214 (340)
                         ...+. ..+..+.++++|+||.|+-....+..+.++...  .+..+|+.
T Consensus        75 ---~~~~~~~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~  123 (354)
T 1x0v_A           75 ---PPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL  123 (354)
T ss_dssp             ---CTTEEEESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEEC
T ss_pred             ---ccCeEEEcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence               00011 122345567899999998765555555554322  24456654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.09  E-value=0.017  Score=55.14  Aligned_cols=93  Identities=10%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH--hhCCCceE
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR--SINSTVHI  165 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~--~lnp~v~i  165 (340)
                      .+|.|||+|.+|+.++..|+.+|.      ..++++|.+.-              ..++.+++.+.+.-.  ..-|...+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~   87 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF--------------VNGERMVDIINNKHENTKYLKGVPL   87 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC-----------------CCHHHHHHHHCBCTTTSTTCBC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh--------------hhhHHHHHHHHhcCcccccCCcccC
Confidence            379999999999999999999982      46888875421              012234444332110  00111110


Q ss_pred             EEecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHH
Q 019513          166 IEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDC  203 (340)
Q Consensus       166 ~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~  203 (340)
                         ...+. ..+..+.+.++|+||.|+-....+..+.+.
T Consensus        88 ---~~~i~~~~~~~ea~~~aDvVilav~~~~~~~vl~~i  123 (375)
T 1yj8_A           88 ---PHNIVAHSDLASVINDADLLIFIVPCQYLESVLASI  123 (375)
T ss_dssp             ---CTTEEEESSTHHHHTTCSEEEECCCHHHHHHHHHHH
T ss_pred             ---cCCeEEECCHHHHHcCCCEEEEcCCHHHHHHHHHHH
Confidence               00011 112335567899999998865555555554

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.08  E-value=0.023  Score=52.30  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|+|||+|++|+.++..|+++|. .++++|.+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            589999999999999999999995 78999865

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.08  E-value=0.28  Score=42.66  Aligned_cols=35  Identities=20%  Similarity=0.063  Sum_probs=27.4

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcC-CCcEEEEeCC
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACG-VGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aG-vg~i~lvD~D  126 (340)
                      +.++|+|.|+ |++|..+++.|+..| --++.+++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            4578999995 779999999999995 2467776643

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.08  E-value=0.084  Score=48.64  Aligned_cols=90  Identities=12%  Similarity=0.140  Sum_probs=50.7

Q ss_pred             ccCCcEEEEcCChhHHH-HHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           91 LLKSSILVIGAGGLGSP-ALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~-va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ++..+|.|||+|.+|.. .+..|.. .|+.-+.++|.+.                   .|++.+++..   +  +.    
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~-------------------~~~~~~a~~~---~--~~----   55 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNK-------------------VKREKICSDY---R--IM----   55 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCH-------------------HHHHHHHHHH---T--CC----
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCH-------------------HHHHHHHHHc---C--CC----
Confidence            34578999999999996 8888876 4544444666432                   2333333222   1  10    


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                         . ..+..+++++.|+|+.|+.+.. ...+...+.+.|++++.
T Consensus        56 ---~-~~~~~~ll~~~D~V~i~tp~~~-h~~~~~~al~~gk~vl~   95 (308)
T 3uuw_A           56 ---P-FDSIESLAKKCDCIFLHSSTET-HYEIIKILLNLGVHVYV   95 (308)
T ss_dssp             ---B-CSCHHHHHTTCSEEEECCCGGG-HHHHHHHHHHTTCEEEE
T ss_pred             ---C-cCCHHHHHhcCCEEEEeCCcHh-HHHHHHHHHHCCCcEEE
Confidence               0 1234455557777777776533 33333445566666553

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.04  E-value=0.036  Score=51.71  Aligned_cols=37  Identities=22%  Similarity=0.385  Sum_probs=31.2

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +.+..+|.|||+|.+|..++..|+..|. +++++|.+.
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   64 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTP   64 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCH
Confidence            3456799999999999999999999996 688888654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.03  E-value=0.26  Score=45.05  Aligned_cols=95  Identities=19%  Similarity=0.216  Sum_probs=59.8

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ++|+|.|+ |.+|+.+++.|...|. ++.+++.+.               .   .|.+.+. .+..  +.+++  +..++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~---------------~---~~~~~~~-~l~~--~~v~~--v~~Dl   67 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN---------------S---SKTTLLD-EFQS--LGAII--VKGEL   67 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT---------------C---SCHHHHH-HHHH--TTCEE--EECCT
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC---------------C---chhhHHH-Hhhc--CCCEE--EEecC
Confidence            57999996 7899999999999994 577665431               0   1222221 1222  34444  33444


Q ss_pred             C-cccHHhhcccCcEEEEcCCChh--hHHHHHHHHHHcC-CcEE
Q 019513          173 R-TSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLG-KPLV  212 (340)
Q Consensus       173 ~-~~~~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~-~p~i  212 (340)
                      + .+.....++++|+||.+.....  ....+-++|.+.+ ++.+
T Consensus        68 ~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~  111 (318)
T 2r6j_A           68 DEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRF  111 (318)
T ss_dssp             TCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEE
T ss_pred             CCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHhcCCCCEE
Confidence            4 3456677889999999886432  2344566777776 6544

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.03  E-value=0.12  Score=46.40  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHc--CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           94 SSILVIGA-GGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ++|+|.|+ |.+|+.+++.|...  | -++.+++.+.                   .+...    +..  +.++  .+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~-------------------~~~~~----l~~--~~~~--~~~~   52 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNV-------------------EKAST----LAD--QGVE--VRHG   52 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCT-------------------TTTHH----HHH--TTCE--EEEC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCH-------------------HHHhH----Hhh--cCCe--EEEe
Confidence            36999997 78999999999998  7 4677776431                   11111    111  2333  3334


Q ss_pred             cCCc-ccHHhhcccCcEEEEcCCC-------hhhHHHHHHHHHHcCC-cEEEEeecC
Q 019513          171 ALRT-SNALEILSQYEIVVDATDN-------APSRYMISDCCVVLGK-PLVSGAALG  218 (340)
Q Consensus       171 ~~~~-~~~~~~l~~~DlVi~~tD~-------~~~r~~i~~~~~~~~~-p~i~~~~~g  218 (340)
                      +++. +...+.++++|+||.+...       ...-..+-++|.+.++ .+|..++.+
T Consensus        53 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           53 DYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             ccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            4443 4456677889999988753       2222345567777776 577766543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.02  E-value=0.072  Score=50.19  Aligned_cols=92  Identities=15%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|+..+|.|||+|.+|..++..|...|+ ++.++|.+.                   .++   .+...+.  .+.+  .
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~-------------------~~~---~~~a~~~--G~~~--~   64 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSG-------------------SAT---VAKAEAH--GLKV--A   64 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT-------------------CHH---HHHHHHT--TCEE--E
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECCh-------------------HHH---HHHHHHC--CCEE--c
Confidence            35778899999999999999999999996 577766432                   011   1111222  1221  1


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHH-HHHHH--cCCcEEEE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMIS-DCCVV--LGKPLVSG  214 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~-~~~~~--~~~p~i~~  214 (340)
                             +..+.++++|+||.|+-....+..+. +....  .+..+++.
T Consensus        65 -------~~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           65 -------DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             -------CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEES
T ss_pred             -------cHHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEc
Confidence                   23456678999999988766666666 44322  24556643

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=95.01  E-value=0.075  Score=48.24  Aligned_cols=83  Identities=16%  Similarity=0.225  Sum_probs=54.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+                   ..|.+.+.+.|.+.++ ..+..+
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~-~~~~~~   67 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRD-------------------VTKGHEAVEKLKNSNH-ENVVFH   67 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTC-CSEEEE
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC-CceEEE
Confidence            467788999986 6799999999999996 67777643                   2355566666766543 245556


Q ss_pred             cccCCcc-c-HHh-------hcccCcEEEEcCCC
Q 019513          169 REALRTS-N-ALE-------ILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~-~-~~~-------~l~~~DlVi~~tD~  193 (340)
                      ..+++.. . ...       .+...|+||.+...
T Consensus        68 ~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           68 QLDVTDPIATMSSLADFIKTHFGKLDILVNNAGV  101 (311)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             EccCCCcHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            6566543 2 222       23479999988764

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.01  E-value=0.017  Score=55.07  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             hhhhccCCCCCHHHH----HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccH
Q 019513           74 YSRHLLLPSFGVEGQ----SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKV  149 (340)
Q Consensus        74 y~Rq~~l~~~G~~~q----~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka  149 (340)
                      |++++.-..|.....    ..|.+++|.|||+|.+|..+|+.|...|.. +..+|....                   +.
T Consensus       141 ~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~-V~~~dr~~~-------------------~~  200 (351)
T 3jtm_A          141 GYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDRLQM-------------------AP  200 (351)
T ss_dssp             HHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCE-EEEECSSCC-------------------CH
T ss_pred             HHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCE-EEEeCCCcc-------------------CH
Confidence            344443344654332    358999999999999999999999999975 666653210                   11


Q ss_pred             HHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHH---cCCcEEEEe
Q 019513          150 KSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVV---LGKPLVSGA  215 (340)
Q Consensus       150 ~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~---~~~p~i~~~  215 (340)
                      +.+    .+..  +.  .      .++..++++.+|+|+.++- +..++.+|+.....   .+.-+|+.+
T Consensus       201 ~~~----~~~g--~~--~------~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  256 (351)
T 3jtm_A          201 ELE----KETG--AK--F------VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA  256 (351)
T ss_dssp             HHH----HHHC--CE--E------CSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred             HHH----HhCC--Ce--E------cCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence            111    1111  11  1      1345678889999988875 34566665443222   344466654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.99  E-value=0.062  Score=48.13  Aligned_cols=82  Identities=15%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             cccCCcEEEEcC-C-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           90 NLLKSSILVIGA-G-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      .|++++|+|.|+ | |+|..+++.|+..|.. +.++|.+.                   .+.+.+.+.+++.. ..++..
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~   77 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHE-------------------RRLGETRDQLADLG-LGRVEA   77 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCH-------------------HHHHHHHHHHHTTC-SSCEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCH-------------------HHHHHHHHHHHhcC-CCceEE
Confidence            367889999998 7 7999999999999964 77776432                   34555566665543 345666


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +...|+||.+..
T Consensus        78 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            66666642 22222       246799998865

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.99  E-value=0.14  Score=50.98  Aligned_cols=123  Identities=11%  Similarity=0.105  Sum_probs=65.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~  170 (340)
                      ...+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..... .  ..|-.-+....+.+..+ .+++-+...+.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~--~~gi~~~~s~~e~v~~l~~aDvVil~Vp~   84 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQSKVDHFLANEA-K--GKSIIGATSIEDFISKLKRPRKVMLLVKA   84 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSHHHHHHHHTTT-T--TSSEECCSSHHHHHHTSCSSCEEEECCCS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHcccc-c--CCCeEEeCCHHHHHhcCCCCCEEEEEcCC
Confidence            35689999999999999999999996 68888865422111111000 0  01111111233333332 24554544443


Q ss_pred             c-CCcc---cHHhhcccCcEEEEcCCChhh-HHHHHHHHHHcCCcEEEEeecC
Q 019513          171 A-LRTS---NALEILSQYEIVVDATDNAPS-RYMISDCCVVLGKPLVSGAALG  218 (340)
Q Consensus       171 ~-~~~~---~~~~~l~~~DlVi~~tD~~~~-r~~i~~~~~~~~~p~i~~~~~g  218 (340)
                      . ...+   .....++.-++||+++-..+. -..+.+.+...++.++.+...|
T Consensus        85 ~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsg  137 (497)
T 2p4q_A           85 GAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSG  137 (497)
T ss_dssp             SHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCccc
Confidence            2 1111   122334455788887655432 2334555556677777655443

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.99  E-value=0.056  Score=51.15  Aligned_cols=85  Identities=20%  Similarity=0.295  Sum_probs=54.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcC---------CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCce
Q 019513           94 SSILVIGAGGLGSPALLYLAACG---------VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVH  164 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aG---------vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~  164 (340)
                      -+|.|+|+|.+|+.+++.|....         +.-..+.|.+.-..           ..++.                ..
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-----------~~~~~----------------~~   56 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-----------RAIPQ----------------EL   56 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-----------CSSCG----------------GG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-----------hccCc----------------cc
Confidence            47999999999999999998753         33345666542110           01100                00


Q ss_pred             EEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          165 IIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       165 i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      +  +      .+..+++ +.|+|++|+.+....+.+...|.+.|+.+|.+
T Consensus        57 ~--~------~d~~~ll-~iDvVve~t~~~~~a~~~~~~AL~aGKhVVta   97 (332)
T 2ejw_A           57 L--R------AEPFDLL-EADLVVEAMGGVEAPLRLVLPALEAGIPLITA   97 (332)
T ss_dssp             E--E------SSCCCCT-TCSEEEECCCCSHHHHHHHHHHHHTTCCEEEC
T ss_pred             c--c------CCHHHHh-CCCEEEECCCCcHHHHHHHHHHHHcCCeEEEC
Confidence            0  0      1222344 78999999988765555666788899998884

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.99  E-value=0.079  Score=51.92  Aligned_cols=95  Identities=16%  Similarity=0.236  Sum_probs=60.1

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|.|+.|..+|+.|...| -++++.|.....                   .....+.|++.  .+++..-.
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G-~~V~~~D~~~~~-------------------~~~~~~~L~~~--gi~~~~g~   63 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLG-AIVTVNDGKPFD-------------------ENPTAQSLLEE--GIKVVCGS   63 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTT-CEEEEEESSCGG-------------------GCHHHHHHHHT--TCEEEESC
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEeCCccc-------------------CChHHHHHHhC--CCEEEECC
Confidence            367899999999999999999999999 568888864310                   01223456554  34443211


Q ss_pred             ccCCcccHHhhccc-CcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          170 EALRTSNALEILSQ-YEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       170 ~~~~~~~~~~~l~~-~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                        . +   .+++.+ +|+||.+..-++....+ ..+++.|+|+++
T Consensus        64 --~-~---~~~~~~~~d~vv~spgi~~~~p~~-~~a~~~gi~v~~  101 (451)
T 3lk7_A           64 --H-P---LELLDEDFCYMIKNPGIPYNNPMV-KKALEKQIPVLT  101 (451)
T ss_dssp             --C-C---GGGGGSCEEEEEECTTSCTTSHHH-HHHHHTTCCEEC
T ss_pred             --C-h---HHhhcCCCCEEEECCcCCCCChhH-HHHHHCCCcEEe
Confidence              1 1   234456 89999876654443333 345666777664

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=94.98  E-value=0.07  Score=48.60  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=28.0

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D  126 (340)
                      ..+|.|||+|.+|+.++..|+..|.+ ++.++|.+
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            45899999999999999999999743 57777643

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=94.97  E-value=0.057  Score=51.74  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=32.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|+|+|.+|..+|+.|...|. ++.+.|.|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~  205 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVN  205 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4788999999999999999999999998 47788754

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=94.97  E-value=0.079  Score=48.66  Aligned_cols=96  Identities=18%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             CCcEEEEc-CChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           93 KSSILVIG-AGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG-~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .-||+|+| +|.+|..+++.+... ++.-+.++|...-.  ..       -.|+|..    +     .+.+.+.      
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~--~~-------G~d~gel----~-----g~~~gv~------   62 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP--QL-------GQDAGAF----L-----GKQTGVA------   62 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT--TT-------TSBTTTT----T-----TCCCSCB------
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc--cc-------cccHHHH----h-----CCCCCce------
Confidence            35799999 799999999998865 33333344533100  00       1123220    0     1111221      


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                       + ..+..+++.++|+|||+|. +..-...-..|.++|+|+|.+.
T Consensus        63 -v-~~dl~~ll~~~DVVIDfT~-p~a~~~~~~~al~~G~~vVigT  104 (272)
T 4f3y_A           63 -L-TDDIERVCAEADYLIDFTL-PEGTLVHLDAALRHDVKLVIGT  104 (272)
T ss_dssp             -C-BCCHHHHHHHCSEEEECSC-HHHHHHHHHHHHHHTCEEEECC
T ss_pred             -e-cCCHHHHhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEEEEC
Confidence             1 2345666778999999985 5555667778999999999754

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.95  E-value=0.27  Score=44.91  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=63.1

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .++|+|.|+ |.+|+.+++.|+..| .++.+++.+.-+           .  --..|.+.+. .+.  .+.+++.  ..+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~-----------~--~~~~~~~~l~-~~~--~~~v~~v--~~D   64 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTP-----------D--STPSSVQLRE-EFR--SMGVTII--EGE   64 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCT-----------T--CCHHHHHHHH-HHH--HTTCEEE--ECC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCccc-----------c--cChHHHHHHH-Hhh--cCCcEEE--Eec
Confidence            357999996 889999999999999 467776643100           0  0001222221 122  2345443  334


Q ss_pred             CC-cccHHhhcccCcEEEEcCCCh--hhHHHHHHHHHHcC-CcEEEEeecC
Q 019513          172 LR-TSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLG-KPLVSGAALG  218 (340)
Q Consensus       172 ~~-~~~~~~~l~~~DlVi~~tD~~--~~r~~i~~~~~~~~-~p~i~~~~~g  218 (340)
                      ++ .+.....++++|+||.+....  ..-..+-++|.+.+ ++.+-.+..|
T Consensus        65 ~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g  115 (321)
T 3c1o_A           65 MEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFG  115 (321)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCS
T ss_pred             CCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHHhCCccEEeccccc
Confidence            44 345667788999999988753  23344666777777 5443334333

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=94.95  E-value=0.047  Score=51.39  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=54.6

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|.+++|+|||.|. +|..+|++|...|. +++++|.+.+........       ++..             .+ ....+
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~-------la~~-------------~~-~~t~~  231 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGES-------LKLN-------------KH-HVEDL  231 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCC-------SSCC-------------CC-EEEEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHH-------Hhhh-------------cc-ccccc
Confidence            57899999999997 59999999999994 699988765433222222       1100             00 00000


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      . ..++.+..+.+..+|+||.++..+.
T Consensus       232 ~-~t~~~~L~e~l~~ADIVIsAtg~p~  257 (320)
T 1edz_A          232 G-EYSEDLLKKCSLDSDVVITGVPSEN  257 (320)
T ss_dssp             E-ECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             c-cccHhHHHHHhccCCEEEECCCCCc
Confidence            0 0112567788899999999998743

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.94  E-value=0.16  Score=46.91  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE--Eecc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII--EHRE  170 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~--~~~~  170 (340)
                      +.||.+||+|-.|.++|.+|+.+|. +++++|.+.-....+.        ..|-.-+...+    +.-....+.  ..+.
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~--------~~G~~~~~s~~----e~~~~~dvvi~~l~~   71 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTASKAEPLT--------KLGATVVENAI----DAITPGGIVFSVLAD   71 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC-------CTTT--------TTTCEECSSGG----GGCCTTCEEEECCSS
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH--------HcCCeEeCCHH----HHHhcCCceeeeccc
Confidence            3589999999999999999999996 4777774432211111        12322222222    222222222  2211


Q ss_pred             cC-----CcccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          171 AL-----RTSNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       171 ~~-----~~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ..     ........+..-++|||++-. +.+-..+.+.+.+.|+.++++...|.
T Consensus        72 ~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg  126 (297)
T 4gbj_A           72 DAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFAR  126 (297)
T ss_dssp             HHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECC
T ss_pred             hhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCC
Confidence            10     001123344566788887655 55566788888999999998777653

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=94.93  E-value=0.049  Score=52.71  Aligned_cols=100  Identities=14%  Similarity=0.097  Sum_probs=60.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh------C
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG-------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI------N  160 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg-------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l------n  160 (340)
                      .||.|+|+|+.|+.+|..|+..|-+       .++|.-.|.               ++-..+   ..+.++..      -
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~---------------e~~~~~---~~e~in~~~~N~~YL   96 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEE---------------EINGEK---LTEIINTRHQNVKYL   96 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCC---------------BSSSCB---HHHHHTTTCCBTTTB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcch---------------HhhhHH---HHHHHHhcCcCcccC
Confidence            3899999999999999999998732       366654332               110000   11111111      1


Q ss_pred             CCceEEEecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513          161 STVHIIEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG  214 (340)
Q Consensus       161 p~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~  214 (340)
                      |++++   +..+. ..+..+.++++|+||.++-+...|..+.+...  ..+.++|++
T Consensus        97 pgv~L---p~~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~  150 (391)
T 4fgw_A           97 PGITL---PDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISC  150 (391)
T ss_dssp             TTCCC---CSSEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEEC
T ss_pred             CCCcC---CCCcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEe
Confidence            22221   11111 23456778999999999999888888887643  345677764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.92  E-value=0.056  Score=50.83  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  199 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGS  199 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            4678999999999999999999999988988874

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=94.90  E-value=0.15  Score=47.06  Aligned_cols=113  Identities=16%  Similarity=0.204  Sum_probs=63.4

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEecc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~  170 (340)
                      +++|+|.|+ |++|+.+++.|+..|. ++.++|...-..    |.       ..  +.....+.+.++ .+.++  .+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----r~-------~~--~~~~~~~~l~~~~~~~~~--~~~~   65 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAF----RG-------GG--SLPESLRRVQELTGRSVE--FEEM   65 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSC----BC-------SS--SSBHHHHHHHHHHTCCCE--EEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCccc----cc-------cc--ccHHHHHHHHhccCCceE--EEEC
Confidence            368999985 7899999999999994 577776432110    00       00  001112233332 33343  3444


Q ss_pred             cCCc-ccHHhhcc--cCcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          171 ALRT-SNALEILS--QYEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       171 ~~~~-~~~~~~l~--~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +++. +...+.++  ++|+||.+......                 -..+-++|.+.++ .+|..++...+|
T Consensus        66 D~~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g  137 (348)
T 1ek6_A           66 DILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYG  137 (348)
T ss_dssp             CTTCHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGC
T ss_pred             CCCCHHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhC
Confidence            5553 33455566  78999998753210                 1124456777665 577766655444

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.90  E-value=0.016  Score=54.86  Aligned_cols=31  Identities=16%  Similarity=0.323  Sum_probs=27.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|.|||+|.+|+.++..|+.+|. .++++|.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            79999999999999999999984 57777654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.90  E-value=0.097  Score=48.64  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=58.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..|.+.+.+.+....+...+..+
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   64 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIR-------------------QDSIDKALATLEAEGSGPEVMGV   64 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCeEEEE
Confidence            467789999986 6799999999999996 47776643                   23566677777776665566666


Q ss_pred             cccCCccc-HHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTSN-ALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++... ...++       ...|+||.+..
T Consensus        65 ~~Dl~~~~~v~~~~~~~~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           65 QLDVASREGFKMAADEVEARFGPVSILCNNAG   96 (319)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            66666532 22222       35799998765

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=94.86  E-value=0.13  Score=47.47  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCC------CcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGV------GRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGv------g~i~lvD~D  126 (340)
                      +++.+|+|.|+ |++|+.+++.|+..|.      .++.++|.+
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~   54 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF   54 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESS
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEcc
Confidence            45668999995 7799999999999983      467777754

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.85  E-value=0.055  Score=48.54  Aligned_cols=83  Identities=18%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..+++++|+|.|+ ||+|..+++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+  ++..
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~   82 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARD-------------------VEKLRAVEREIVAAGG--EAES   82 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--EEEE
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHHhCC--ceeE
Confidence            3477889999985 67999999999999964 7777643                   2355666666766554  4455


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD~  193 (340)
                      +..+++.. ....+       +...|+||.+...
T Consensus        83 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A           83 HACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             EEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            55555542 22222       2468999988654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=94.84  E-value=0.19  Score=46.93  Aligned_cols=87  Identities=17%  Similarity=0.195  Sum_probs=52.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|.|||+|.+|...+..|... |+.-+.++|.+.                   .+++.++   .+..  +.  .+    
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~-------------------~~~~~~a---~~~g--~~--~~----   54 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFI-------------------EGAQRLA---EANG--AE--AV----   54 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSH-------------------HHHHHHH---HTTT--CE--EE----
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCH-------------------HHHHHHH---HHcC--Cc--ee----
Confidence            4799999999999999999886 443334555332                   2222222   2222  22  11    


Q ss_pred             CcccHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          173 RTSNALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                        .+..++++  +.|+|+.|+.+ .....+...|.+.|++++.
T Consensus        55 --~~~~~~l~~~~~D~V~i~tp~-~~h~~~~~~al~~gk~v~~   94 (344)
T 3euw_A           55 --ASPDEVFARDDIDGIVIGSPT-STHVDLITRAVERGIPALC   94 (344)
T ss_dssp             --SSHHHHTTCSCCCEEEECSCG-GGHHHHHHHHHHTTCCEEE
T ss_pred             --CCHHHHhcCCCCCEEEEeCCc-hhhHHHHHHHHHcCCcEEE
Confidence              23455665  78899988865 3344445556677777664

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=94.83  E-value=0.18  Score=44.13  Aligned_cols=88  Identities=22%  Similarity=0.241  Sum_probs=58.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ..++|+|+|+|+.|..++..|...|..-+.++|+|.-.. .     +.                      .+.+...   
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~~~-~-----~~----------------------g~~Vlg~---   59 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPTRR-A-----VL----------------------GVPVVGD---   59 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC----C-----BT----------------------TBCEEES---
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCcccC-c-----CC----------------------CeeEECC---
Confidence            446899999999999999999999988899999764211 0     11                      1112111   


Q ss_pred             CCcccHHhhccc-CcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          172 LRTSNALEILSQ-YEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       172 ~~~~~~~~~l~~-~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                        .+...++.+. .+.++.+..+...|..+.+.+...+..+.
T Consensus        60 --~~~~~~~~~~~~~~v~iAIg~~~~R~~i~~~l~~~g~~~~   99 (220)
T 4ea9_A           60 --DLALPMLREQGLSRLFVAIGDNRLRQKLGRKARDHGFSLV   99 (220)
T ss_dssp             --GGGHHHHHHTTCCEEEECCCCHHHHHHHHHHHHHTTCEEC
T ss_pred             --HHHHHHhhcccccEEEEecCCHHHHHHHHHHHHhcCCCcC
Confidence              1122233322 34566688888889999999888876543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.81  E-value=0.17  Score=49.63  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+|.|||+|.+|..+|..|+..|. +++++|.|.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence            489999999999999999999995 688998764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=94.81  E-value=0.12  Score=46.39  Aligned_cols=29  Identities=21%  Similarity=0.170  Sum_probs=25.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      +|.|||+|.+|+.++..|+..|. +++++|
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~   30 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL   30 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeC
Confidence            69999999999999999999996 566644

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=94.81  E-value=0.067  Score=48.25  Aligned_cols=35  Identities=26%  Similarity=0.206  Sum_probs=27.0

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -..++|+|.|+ |.+|+.+++.|...| -++.++|.+
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   45 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ   45 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc
Confidence            34578999986 669999999999998 467777653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.80  E-value=0.13  Score=45.61  Aligned_cols=81  Identities=19%  Similarity=0.237  Sum_probs=52.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                   .+.+.+.+.++...+.  +..+
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~~~   67 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDE-------------------AMATKAVEDLRMEGHD--VSSV   67 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCC--EEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCc--eEEE
Confidence            467889999986 6799999999999996 677776432                   2344455556554443  4444


Q ss_pred             cccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++. +...+++       .+.|+||.+..
T Consensus        68 ~~D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag   99 (260)
T 3awd_A           68 VMDVTNTESVQNAVRSVHEQEGRVDILVACAG   99 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            555553 2223333       36899998764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.80  E-value=0.13  Score=45.88  Aligned_cols=82  Identities=23%  Similarity=0.279  Sum_probs=52.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+....+..++..+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   64 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNR-------------------EKLEAAASRIASLVSGAQVDIVA   64 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEEE
Confidence            56788999986 5799999999999996 577776432                   23444555555443333455555


Q ss_pred             ccCCcc-cHHhhcc------cCcEEEEcCC
Q 019513          170 EALRTS-NALEILS------QYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~-~~~~~l~------~~DlVi~~tD  192 (340)
                      .+++.. ....+++      +.|+||.+..
T Consensus        65 ~D~~~~~~v~~~~~~~~~~~gid~lv~~Ag   94 (260)
T 2z1n_A           65 GDIREPGDIDRLFEKARDLGGADILVYSTG   94 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            566542 2233332      3899888765

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=94.79  E-value=0.037  Score=52.39  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|.+
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~  196 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRS  196 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            36889999999999999999999999996 57777753

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=94.77  E-value=0.1  Score=48.34  Aligned_cols=96  Identities=10%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIG-AGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG-~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      -||+|+| +|.+|..+++.+... ++.=+.++|...-   +      ..-.|+|..         ..+.+ ..+     .
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~---~------~~G~d~gel---------~G~~~-~gv-----~   77 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS---S------FVDKDASIL---------IGSDF-LGV-----R   77 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC---T------TTTSBGGGG---------TTCSC-CSC-----B
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---c------ccccchHHh---------hccCc-CCc-----e
Confidence            4799999 899999999998754 4444445554310   0      001133310         00100 111     1


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      + ..+..+++.++|+|||+|. +..-...-.+|.++|+|+|.+.
T Consensus        78 v-~~dl~~ll~~aDVvIDFT~-p~a~~~~~~~~l~~Gv~vViGT  119 (288)
T 3ijp_A           78 I-TDDPESAFSNTEGILDFSQ-PQASVLYANYAAQKSLIHIIGT  119 (288)
T ss_dssp             C-BSCHHHHTTSCSEEEECSC-HHHHHHHHHHHHHHTCEEEECC
T ss_pred             e-eCCHHHHhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEEEEC
Confidence            1 1345667788999999985 5555666778999999999764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=94.77  E-value=0.025  Score=55.55  Aligned_cols=35  Identities=26%  Similarity=0.497  Sum_probs=33.4

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCC--CcEEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGV--GRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGv--g~i~lvD  124 (340)
                      .|++++|+|+|+|+.|..++..|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            5788999999999999999999999999  8999998

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=94.76  E-value=0.22  Score=45.73  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +|+|.|+ |.+|+.+++.|... |. ++.++|.+.-.   +..  +.                   ..+  .+..+..++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~---~~~--~~-------------------~~~--~~~~~~~D~   54 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA---ISR--FL-------------------NHP--HFHFVEGDI   54 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG---GGG--GT-------------------TCT--TEEEEECCT
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcch---HHH--hh-------------------cCC--CeEEEeccc
Confidence            6999997 77999999999998 64 67777653211   000  00                   012  234444455


Q ss_pred             Cc-c-cHHhhcccCcEEEEcCCChh-----------------hHHHHHHHHHHcCCcEEEEeecCcee
Q 019513          173 RT-S-NALEILSQYEIVVDATDNAP-----------------SRYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       173 ~~-~-~~~~~l~~~DlVi~~tD~~~-----------------~r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      +. . ...+.++++|+||.+.....                 .-..+-++|.+.+..+|..++.+.+|
T Consensus        55 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g  122 (345)
T 2bll_A           55 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  122 (345)
T ss_dssp             TTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             cCcHHHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcC
Confidence            53 2 34556778999998754211                 01134466777777888877765554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.74  E-value=0.07  Score=49.95  Aligned_cols=73  Identities=22%  Similarity=0.153  Sum_probs=53.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ..++|+|||+|..|...+++|.. .++.+|.++|.+                     |++.+++.+.+.. .+.+...  
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------------------~a~~la~~l~~~~-g~~~~~~--  175 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------------------ASPEILERIGRRC-GVPARMA--  175 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------------------CCHHHHHHHHHHH-TSCEEEC--
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------------------HHHHHHHHHHHhc-CCeEEEe--
Confidence            45789999999999999999987 478899997632                     5666666666432 2333322  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCC
Q 019513          171 ALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                           +..+.+.++|+|+.||-.
T Consensus       176 -----~~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          176 -----APADIAAQADIVVTATRS  193 (313)
T ss_dssp             -----CHHHHHHHCSEEEECCCC
T ss_pred             -----CHHHHHhhCCEEEEccCC
Confidence                 345667889999999876

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.72  E-value=0.063  Score=53.41  Aligned_cols=122  Identities=12%  Similarity=0.157  Sum_probs=69.3

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEeccc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~  171 (340)
                      ..+|.|||+|.+|..+|.+|+..|. ++.++|.+.-....+......   .....-+....+.+..+ .+++-+...+..
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~---g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~   79 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAK---GTKVVGAQSLKEMVSKLKKPRRIILLVKAG   79 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTT---TSSCEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcccC---CCceeccCCHHHHHhhccCCCEEEEecCCh
Confidence            3579999999999999999999996 688888654221111111000   00000012233333332 345544444332


Q ss_pred             -CCc---ccHHhhcccCcEEEEcCCChh-hHHHHHHHHHHcCCcEEEEeecC
Q 019513          172 -LRT---SNALEILSQYEIVVDATDNAP-SRYMISDCCVVLGKPLVSGAALG  218 (340)
Q Consensus       172 -~~~---~~~~~~l~~~DlVi~~tD~~~-~r~~i~~~~~~~~~p~i~~~~~g  218 (340)
                       ...   +.....++.-++|||++-..+ .-..+.+.+...++.++.+...|
T Consensus        80 ~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           80 QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence             111   122334566789999887654 33345566677889898876654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.72  E-value=0.03  Score=54.19  Aligned_cols=104  Identities=18%  Similarity=0.239  Sum_probs=63.2

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+|...||+|+|+|..|..+++.|..+|+++|+++|.+-+-..+  |     ..++-..|..-+.+    .++..     
T Consensus       184 ~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~--R-----~~~L~~~k~~fa~~----~~~~~-----  247 (398)
T 2a9f_A          184 KSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQ--E-----AAQLAPHHLDIAKV----TNREF-----  247 (398)
T ss_dssp             CCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTT--C-----CCSCCC---CHHHH----HSCTT-----
T ss_pred             CCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCC--c-----cccchHHHHHHhhc----cCccc-----
Confidence            37889999999999999999999999999999999987421000  0     01122333333332    22211     


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                          ...++.+.+++.|++|.++.. .-++..+...+   ..|+|..-
T Consensus       248 ----~~~~L~eav~~ADV~IG~Sapgl~T~EmVk~Ma---~~pIIfal  288 (398)
T 2a9f_A          248 ----KSGTLEDALEGADIFIGVSAPGVLKAEWISKMA---ARPVIFAM  288 (398)
T ss_dssp             ----CCCSCSHHHHTTCSEEECCSTTCCCHHHHHTSC---SSCEEEEC
T ss_pred             ----chhhHHHHhccCCEEEecCCCCCCCHHHHHhhC---CCCEEEEC
Confidence                123455667778999988651 11344444433   45777643

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.71  E-value=0.14  Score=46.08  Aligned_cols=82  Identities=11%  Similarity=0.098  Sum_probs=54.5

Q ss_pred             cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      .|+++.++|-|++   |+|..+|+.|++.|. ++.+.|.+                   ..+.+.+++.+.+.+. .++.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~-------------------~~~~~~~~~~~~~~~~-~~~~   61 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRK-------------------ERSRKELEKLLEQLNQ-PEAH   61 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESS-------------------GGGHHHHHHHHGGGTC-SSCE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC-CcEE
Confidence            5889999999974   799999999999996 58887743                   2244556666666653 2334


Q ss_pred             EecccCCcc-c-------HHhhcccCcEEEEcCC
Q 019513          167 EHREALRTS-N-------ALEILSQYEIVVDATD  192 (340)
Q Consensus       167 ~~~~~~~~~-~-------~~~~l~~~DlVi~~tD  192 (340)
                      .+..+++.. .       ..+.+...|++|.+..
T Consensus        62 ~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnnAg   95 (256)
T 4fs3_A           62 LYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIA   95 (256)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHhCCCCEEEeccc
Confidence            444455532 1       2233457888887643

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.69  E-value=0.19  Score=45.57  Aligned_cols=87  Identities=17%  Similarity=0.198  Sum_probs=57.2

Q ss_pred             CHHHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC
Q 019513           84 GVEGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST  162 (340)
Q Consensus        84 G~~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~  162 (340)
                      .......|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+......
T Consensus        24 ~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~   83 (275)
T 4imr_A           24 RLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVK-------------------PGSTAAVQQRIIASGGT   83 (275)
T ss_dssp             SHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------TTTTHHHHHHHHHTTCC
T ss_pred             cccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC-------------------HHHHHHHHHHHHhcCCe
Confidence            345566789999999986 6799999999999997 57777643                   12445566666665444


Q ss_pred             ceEEEecccCCcc-cHHhhc------ccCcEEEEcCC
Q 019513          163 VHIIEHREALRTS-NALEIL------SQYEIVVDATD  192 (340)
Q Consensus       163 v~i~~~~~~~~~~-~~~~~l------~~~DlVi~~tD  192 (340)
                        +..+..+++.. ....++      ...|++|.+..
T Consensus        84 --~~~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg  118 (275)
T 4imr_A           84 --AQELAGDLSEAGAGTDLIERAEAIAPVDILVINAS  118 (275)
T ss_dssp             --EEEEECCTTSTTHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             --EEEEEecCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence              44444455432 222222      36899888765

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=94.69  E-value=0.06  Score=50.34  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~  176 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHART  176 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            36889999999999999999999999995 57777753

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.68  E-value=0.091  Score=47.92  Aligned_cols=32  Identities=22%  Similarity=0.142  Sum_probs=26.7

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +++|+|.|+ |.+|+.+++.|+..| -++.++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEcc
Confidence            468999997 779999999999999 46777764

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=94.68  E-value=0.15  Score=46.83  Aligned_cols=108  Identities=14%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.+|+|.|+ |++|+.+++.|+..|- -++.++|...-. .+..+                    +.++.....+..+..
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~--------------------~~~~~~~~~~~~~~~   61 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG-SNPAN--------------------LKDLEDDPRYTFVKG   61 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT-CCGGG--------------------GTTTTTCTTEEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCccc-CchhH--------------------HhhhccCCceEEEEc
Confidence            457999995 7799999999999984 367777753210 00000                    001111122444444


Q ss_pred             cCCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcC--CcEEEEeecCcee
Q 019513          171 ALRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLG--KPLVSGAALGLEG  221 (340)
Q Consensus       171 ~~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~--~p~i~~~~~g~~G  221 (340)
                      +++. +...+.+.++|+||.+......                 -..+.++|...+  ..+|..++...+|
T Consensus        62 Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg  132 (336)
T 2hun_A           62 DVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYG  132 (336)
T ss_dssp             CTTCHHHHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGC
T ss_pred             CCCCHHHHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHC
Confidence            5553 3345566789999998754210                 112445666655  3688777654444

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=94.67  E-value=0.092  Score=47.64  Aligned_cols=49  Identities=22%  Similarity=0.310  Sum_probs=27.5

Q ss_pred             hhhhhhccCCCCCHHHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +-|.|.+.+     .....+.+++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus        12 ~~~~~~~~~-----~~m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   61 (272)
T 4dyv_A           12 DLGTENLYF-----QSMSKTGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRR   61 (272)
T ss_dssp             ---------------------CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCcceeeh-----hhhcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            445555544     2234567788888885 6799999999999997 57777643

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=94.67  E-value=0.056  Score=49.78  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             ccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |.+++|+|||.|+ +|.++|..|...|. ++++++..                                           
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~-------------------------------------------  183 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK-------------------------------------------  183 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------------------------------
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------------------------------
Confidence            8999999999997 79999999999997 57876421                                           


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                          ..+..+.++.+|+||.++..+..   |..--.+.|.-+|+.+.
T Consensus       184 ----t~~L~~~~~~ADIVI~Avg~p~~---I~~~~vk~GavVIDvgi  223 (276)
T 3ngx_A          184 ----TKDIGSMTRSSKIVVVAVGRPGF---LNREMVTPGSVVIDVGI  223 (276)
T ss_dssp             ----CSCHHHHHHHSSEEEECSSCTTC---BCGGGCCTTCEEEECCC
T ss_pred             ----cccHHHhhccCCEEEECCCCCcc---ccHhhccCCcEEEEecc
Confidence                13455677889999999876431   22222244555666554

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.67  E-value=0.092  Score=49.89  Aligned_cols=34  Identities=15%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  215 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTR  215 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4678999999999999999999999988888764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.65  E-value=0.12  Score=46.82  Aligned_cols=80  Identities=14%  Similarity=0.243  Sum_probs=52.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+... ..+..+
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~   83 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK-------------------ETLQKVVSHCLELGA-ASAHYI   83 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHTC-SEEEEE
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHhCC-CceEEE
Confidence            467889999997 6799999999999996 577776431                   244455555655542 345555


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEc
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDA  190 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~  190 (340)
                      ..+++.. ....++       .+.|+||.+
T Consensus        84 ~~Dl~d~~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           84 AGTMEDMTFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5566542 222222       378999877

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.63  E-value=0.088  Score=49.11  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=31.3

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      -.+.+|+|.|+|++|..++..+...|...++.+|.
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~  193 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec
Confidence            45688999999999999999999999999888874

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=94.56  E-value=0.35  Score=45.51  Aligned_cols=117  Identities=14%  Similarity=0.088  Sum_probs=64.8

Q ss_pred             CcEEEEcC-ChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC---ce---E
Q 019513           94 SSILVIGA-GGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST---VH---I  165 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~---v~---i  165 (340)
                      .+|+|.|+ |++|+.+++.|+ ..|. ++.++|...-...   .     . + .....+.+.+.+.++...   -.   +
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSLVGTHG---K-----S-D-HVETRENVARKLQQSDGPKPPWADRYA   71 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECCTTTTT---C-----C-T-TSCCHHHHHHHHHHSCSSCCTTTTCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecCCcccc---c-----c-c-ccchHHHHHHHHHHhhccccccCCceE
Confidence            47999996 779999999999 9994 6777774321100   0     0 0 000123333334444221   11   3


Q ss_pred             EEecccCCc-ccHHhhcc--c-CcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          166 IEHREALRT-SNALEILS--Q-YEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       166 ~~~~~~~~~-~~~~~~l~--~-~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      ..+..+++. +...++++  + +|+||.+......                 -..+-++|.+.++ .+|..++.+.+|
T Consensus        72 ~~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g  149 (397)
T 1gy8_A           72 ALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFG  149 (397)
T ss_dssp             EEEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTB
T ss_pred             EEEECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhC
Confidence            444445553 33445555  5 9999998753211                 1124466777765 577766655444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=94.56  E-value=0.2  Score=49.52  Aligned_cols=119  Identities=12%  Similarity=0.134  Sum_probs=61.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEeccc-
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-  171 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~-  171 (340)
                      .+|.|||+|.+|+.++.+|+..|. ++.++|.+.-....+.....  . ..|-.-+....+.+..+ .+++-+...+.. 
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~--~-g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~   78 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA--K-GTKVLGAHSLEEMVSKLKKPRRIILLVKAGQ   78 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT--T-TSSCEECSSHHHHHHHBCSSCEEEECSCTTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhccc--c-CCCeEEeCCHHHHHhhccCCCEEEEeCCChH
Confidence            479999999999999999999997 58888865321111111000  0 01111111223333322 445544444332 


Q ss_pred             CCcc---cHHhhcccCcEEEEcCCChh-hHHHHHHHHHHcCCcEEEEee
Q 019513          172 LRTS---NALEILSQYEIVVDATDNAP-SRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       172 ~~~~---~~~~~l~~~DlVi~~tD~~~-~r~~i~~~~~~~~~p~i~~~~  216 (340)
                      ...+   .....++.-++||+++-... .-..+.+.+...++.++.+..
T Consensus        79 ~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv  127 (482)
T 2pgd_A           79 AVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGV  127 (482)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCC
Confidence            1111   12233445578887754433 222345555556777775543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=94.56  E-value=0.073  Score=49.26  Aligned_cols=34  Identities=24%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD  124 (340)
                      .|++++|+|||.|+ +|.++|..|...|. ++++++
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h  191 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCH  191 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence            57999999999998 79999999999997 588865

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.54  E-value=0.15  Score=49.73  Aligned_cols=32  Identities=28%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            69999999999999999999996 688888654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.53  E-value=0.066  Score=49.90  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++|+|||.|+ +|.++|..|...|. ++++++.
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~  197 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHS  197 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            58999999999998 79999999999997 5888753

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.53  E-value=0.16  Score=45.29  Aligned_cols=80  Identities=16%  Similarity=0.281  Sum_probs=51.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~  168 (340)
                      |++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+. ..  ++..+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~~~~   62 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQV-------------------DRLHEAARSLKEKFGV--RVLEV   62 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHHCC--CEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHHhcCC--ceEEE
Confidence            56788999986 6799999999999996 577776432                   2344445555443 33  34445


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ...+++       .+.|+||.+..
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   94 (263)
T 3ai3_A           63 AVDVATPEGVDAVVESVRSSFGGADILVNNAG   94 (263)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555532 222333       37899998864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.51  E-value=0.18  Score=45.02  Aligned_cols=81  Identities=17%  Similarity=0.202  Sum_probs=55.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+++..+  ++..+
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   61 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRN-------------------GEKLAPLVAEIEAAGG--RIVAR   61 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------GGGGHHHHHHHHHTTC--EEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--eEEEE
Confidence            367888999985 5799999999999997 57777643                   2355666777776644  45555


Q ss_pred             cccCCcc-cHHhhc------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l------~~~DlVi~~tD  192 (340)
                      ..+++.. ....++      ...|++|.+..
T Consensus        62 ~~Dv~~~~~v~~~~~~~~~~g~id~lv~nAg   92 (252)
T 3h7a_A           62 SLDARNEDEVTAFLNAADAHAPLEVTIFNVG   92 (252)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             ECcCCCHHHHHHHHHHHHhhCCceEEEECCC
Confidence            5566542 223333      26788888765

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.48  E-value=0.23  Score=45.09  Aligned_cols=88  Identities=15%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-....+            ..+.+.+.+.+.....  ++..+
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~   70 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKL------------PGTIYTAAKEIEEAGG--QALPI   70 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSS------------CCCHHHHHHHHHHHTS--EEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhh------------hHHHHHHHHHHHhcCC--cEEEE
Confidence            477889999986 6799999999999997 688887654221111            1245666677777654  45555


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ....++       ...|++|.+..
T Consensus        71 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           71 VGDIRDGDAVAAAVAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5566542 222222       47899998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.44  E-value=0.048  Score=50.28  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..+|.|||+|.+|..++..|+..|. +++++|.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            3689999999999999999999995 688888654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.43  E-value=0.084  Score=49.75  Aligned_cols=34  Identities=35%  Similarity=0.519  Sum_probs=29.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  204 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL  204 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4578999999999999999888899988888874

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.41  E-value=0.082  Score=48.89  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|||.|+ +|.++|..|...|. ++++.+..                                          
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~------------------------------------------  194 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRF------------------------------------------  194 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT------------------------------------------
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC------------------------------------------
Confidence            57999999999998 79999999999997 57876310                                          


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                           ..+..+.++.+|+||.++..+..   |..-..+-|.-+|+.+..
T Consensus       195 -----t~~L~~~~~~ADIVI~Avg~p~~---I~~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          195 -----TTDLKSHTTKADILIVAVGKPNF---ITADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             -----CSSHHHHHTTCSEEEECCCCTTC---BCGGGSCTTCEEEECCCE
T ss_pred             -----chhHHHhcccCCEEEECCCCCCC---CCHHHcCCCcEEEEeccc
Confidence                 12455677899999999875432   222222445556665543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=94.41  E-value=0.19  Score=46.55  Aligned_cols=32  Identities=16%  Similarity=0.153  Sum_probs=25.7

Q ss_pred             cEEEEcCChhHHHH-HHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPA-LLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~v-a~~La~aGvg~i~lvD~D  126 (340)
                      +|.|||+|.+|... +..|...|+.-+.++|.+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~   34 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTS   34 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCC
Confidence            69999999999997 888888666555677754

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=94.38  E-value=0.067  Score=48.36  Aligned_cols=30  Identities=33%  Similarity=0.353  Sum_probs=25.0

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+|.|+ |.+|+.+++.|. .| .++..+|.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~   32 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVH   32 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTT
T ss_pred             eEEEECCCCHHHHHHHHHhh-cC-CeEEEeccc
Confidence            6999997 779999999999 78 567777654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.37  E-value=0.056  Score=52.51  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=32.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+...+|+|+|+|.+|..+++.+...|. +++++|.+.
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~  223 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRP  223 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSST
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            4678999999999999999999999998 688888543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.37  E-value=0.1  Score=51.99  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+++|+|+|+|.+|..+++.|...|. ++.++|.+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~  306 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEID  306 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4678999999999999999999999997 78888754

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=94.35  E-value=0.22  Score=48.57  Aligned_cols=99  Identities=14%  Similarity=0.070  Sum_probs=58.5

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCceEEEe
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v~i~~~  168 (340)
                      ++.-+|.|||+|.+|...+..|... |+.-+.++|.                   ...|++.+++.+.+.. |.+.+  +
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~-------------------~~~~~~~~a~~~~~~g~~~~~~--~   76 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP-------------------DPYMVGRAQEILKKNGKKPAKV--F   76 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS-------------------CHHHHHHHHHHHHHTTCCCCEE--E
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeC-------------------CHHHHHHHHHHHHhcCCCCCce--e
Confidence            3456899999999999999888864 4433345543                   2345666666665443 32332  2


Q ss_pred             cccCCcccHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          169 REALRTSNALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       169 ~~~~~~~~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      ..  .+++..++++  +.|+|+.|+.+. ....+...|.+.|++++.
T Consensus        77 ~~--~~~~~~~ll~~~~vD~V~i~tp~~-~h~~~~~~al~aGkhV~~  120 (444)
T 2ixa_A           77 GN--GNDDYKNMLKDKNIDAVFVSSPWE-WHHEHGVAAMKAGKIVGM  120 (444)
T ss_dssp             CS--STTTHHHHTTCTTCCEEEECCCGG-GHHHHHHHHHHTTCEEEE
T ss_pred             cc--CCCCHHHHhcCCCCCEEEEcCCcH-HHHHHHHHHHHCCCeEEE
Confidence            11  1124556665  588888888753 444444455666665543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.34  E-value=0.15  Score=48.90  Aligned_cols=34  Identities=18%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  246 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEP  246 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3578999999999999999999999988888763

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.33  E-value=0.22  Score=44.97  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=56.5

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC-ceEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST-VHII  166 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~-v~i~  166 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+++.... ..+.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~   66 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNP-------------------DKLAGAVQELEALGANGGAIR   66 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTCCSSCEEE
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEE
Confidence            3577899999985 6799999999999996 577776432                   3455666667665442 2566


Q ss_pred             EecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          167 EHREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       167 ~~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      .+..+++.. ....+       +...|+||.+..
T Consensus        67 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  100 (281)
T 3svt_A           67 YEPTDITNEDETARAVDAVTAWHGRLHGVVHCAG  100 (281)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666666642 22222       236799998765

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.33  E-value=0.18  Score=44.95  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   45 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRN   45 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4578899999986 5799999999999997 57777643

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.33  E-value=0.24  Score=45.45  Aligned_cols=110  Identities=12%  Similarity=0.031  Sum_probs=61.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +-.+.+|+|.|+ |.+|+.+++.|...|. ++.++|.+.-.              .   +.    ..+..+...-.+..+
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~--------------~---~~----~~~~~~~~~~~~~~~   68 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSS--------------D---TR----WRLRELGIEGDIQYE   68 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSS--------------C---CC----HHHHHTTCGGGEEEE
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCcc--------------c---cc----cchhhccccCceEEE
Confidence            345788999986 6799999999999994 67777753211              0   00    111222112234444


Q ss_pred             cccCCc-ccHHhhccc--CcEEEEcCCChhh-----------------HHHHHHHHHHcC--CcEEEEeecCcee
Q 019513          169 REALRT-SNALEILSQ--YEIVVDATDNAPS-----------------RYMISDCCVVLG--KPLVSGAALGLEG  221 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~--~DlVi~~tD~~~~-----------------r~~i~~~~~~~~--~p~i~~~~~g~~G  221 (340)
                      ..+++. +...+.+++  .|+||.+......                 -..+.++|.+.+  ..+|..++.+.+|
T Consensus        69 ~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g  143 (335)
T 1rpn_A           69 DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFG  143 (335)
T ss_dssp             ECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGC
T ss_pred             ECCCCCHHHHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhC
Confidence            445543 334455554  6999987643211                 112456677765  4678777655544

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=94.33  E-value=0.27  Score=45.99  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CcEEEEcCChhHHHHHHHHH-H-cCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLA-A-CGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La-~-aGvg~i~lvD~  125 (340)
                      -+|.|||+|.+|...+..|. . .|+.-+.++|.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~   36 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDV   36 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcC
Confidence            37999999999999999998 4 45443445554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.32  E-value=0.1  Score=47.24  Aligned_cols=89  Identities=16%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             CCCHHHH-HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh
Q 019513           82 SFGVEGQ-SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI  159 (340)
Q Consensus        82 ~~G~~~q-~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l  159 (340)
                      ..|+... ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+.+.
T Consensus        16 ~~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~   75 (270)
T 3ftp_A           16 TQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATT-------------------EAGAEGIGAAFKQA   75 (270)
T ss_dssp             -------CCTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHH
T ss_pred             CCCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhc
Confidence            3555433 3477888888885 6799999999999997 57776643                   23455666666666


Q ss_pred             CCCceEEEecccCCc-ccHHhh-------cccCcEEEEcCC
Q 019513          160 NSTVHIIEHREALRT-SNALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       160 np~v~i~~~~~~~~~-~~~~~~-------l~~~DlVi~~tD  192 (340)
                      ...+..  +..+++. +....+       +...|+||.+..
T Consensus        76 ~~~~~~--~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (270)
T 3ftp_A           76 GLEGRG--AVLNVNDATAVDALVESTLKEFGALNVLVNNAG  114 (270)
T ss_dssp             TCCCEE--EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCcEEE--EEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            554443  3344443 222222       247899998764

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.31  E-value=0.087  Score=49.10  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=55.7

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+.+++|+|||.|. +|.++|..|...| .++++++..                                          
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~hs~------------------------------------------  198 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSK------------------------------------------  198 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTT------------------------------------------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEECC------------------------------------------
Confidence            57899999999996 7999999999999 568887511                                          


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                           ..+..+.++.+|+||.++..+..   |..--.+.|.-+|+.+..
T Consensus       199 -----t~~L~~~~~~ADIVI~Avg~p~~---I~~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          199 -----TAHLDEEVNKGDILVVATGQPEM---VKGEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             -----CSSHHHHHTTCSEEEECCCCTTC---BCGGGSCTTCEEEECCCB
T ss_pred             -----cccHHHHhccCCEEEECCCCccc---CCHHHcCCCcEEEEccCC
Confidence                 13556778899999999987542   222223445556665543

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.30  E-value=0.16  Score=47.44  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ||+|+|+ |.+|..++..|+..|. .+|.|+|-+.                     .+..+..|........+..+.   
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~---------------------~~~~a~dL~~~~~~~~l~~~~---   57 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH---------------------TPGVAADLSHIETRATVKGYL---   57 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS---------------------HHHHHHHHTTSSSSCEEEEEE---
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc---------------------cHHHHHHHhccCcCceEEEec---
Confidence            7999998 9999999999998885 6799999653                     111222333322223333321   


Q ss_pred             CcccHHhhcccCcEEEEcCCCh
Q 019513          173 RTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      ...+..+.++++|+||.+...+
T Consensus        58 ~t~d~~~a~~~aDvVvi~ag~~   79 (314)
T 1mld_A           58 GPEQLPDCLKGCDVVVIPAGVP   79 (314)
T ss_dssp             SGGGHHHHHTTCSEEEECCSCC
T ss_pred             CCCCHHHHhCCCCEEEECCCcC
Confidence            1123445578899999887543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.30  E-value=0.12  Score=47.47  Aligned_cols=31  Identities=29%  Similarity=0.375  Sum_probs=26.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHc-----CCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAAC-----GVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~a-----Gvg~i~lvD~  125 (340)
                      +|+|||+|.+|+.++..|+.+     |..+++++|.
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            699999999999999999998     7235777753

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.30  E-value=0.048  Score=49.67  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=27.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .+|.|||+|.+|+.++..|+..|. +++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence            479999999999999999999996 677877

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.29  E-value=0.21  Score=46.40  Aligned_cols=37  Identities=22%  Similarity=0.174  Sum_probs=30.4

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+++++|+|.|+ |.+|+.+++.|...|. ++.++|.+
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   42 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT   42 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence            3467789999995 7799999999999995 67777753

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=94.29  E-value=0.37  Score=44.35  Aligned_cols=106  Identities=12%  Similarity=0.102  Sum_probs=63.8

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++|+|.|+ |.+|+.+++.|+..|- -++.++|...-.. +..                    .+.++. ...+..+..+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~~--------------------~~~~~~-~~~~~~~~~D   62 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-NKA--------------------NLEAIL-GDRVELVVGD   62 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CGG--------------------GTGGGC-SSSEEEEECC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCC-Chh--------------------HHhhhc-cCCeEEEECC
Confidence            57999995 7799999999999843 3677777532100 000                    011111 1234444455


Q ss_pred             CCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCCcEEEEeecCcee
Q 019513          172 LRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       172 ~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      ++. +...+.++++|+||.+......                 -..+-++|...+..+|..++...+|
T Consensus        63 l~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg  130 (348)
T 1oc2_A           63 IADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYG  130 (348)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGC
T ss_pred             CCCHHHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeC
Confidence            553 3455677889999998754211                 1224467777777888877765554

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.25  E-value=0.063  Score=51.06  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~  226 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDI  226 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            4678999999999999999999999988988873

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.24  E-value=0.21  Score=45.21  Aligned_cols=101  Identities=17%  Similarity=0.111  Sum_probs=60.6

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .++|+|.|+ |.+|+.+++.|...|--++.+++.+.-                   +..  .+.+..  +.+++  +..+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-------------------~~~--~~~l~~--~~~~~--~~~D   59 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-------------------KKA--AKELRL--QGAEV--VQGD   59 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-------------------SHH--HHHHHH--TTCEE--EECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-------------------CHH--HHHHHH--CCCEE--EEec
Confidence            468999998 779999999999988445777664320                   111  122222  24443  3334


Q ss_pred             CC-cccHHhhcccCcEEEEcCCChh---------hHHHHHHHHHHcCCc-EEEEeecC
Q 019513          172 LR-TSNALEILSQYEIVVDATDNAP---------SRYMISDCCVVLGKP-LVSGAALG  218 (340)
Q Consensus       172 ~~-~~~~~~~l~~~DlVi~~tD~~~---------~r~~i~~~~~~~~~p-~i~~~~~g  218 (340)
                      ++ ++.....++++|+||.+.....         .-..+-++|.+.+++ +|..+..+
T Consensus        60 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~  117 (299)
T 2wm3_A           60 QDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLEN  117 (299)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred             CCCHHHHHHHHhcCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCcc
Confidence            44 3455667788999998875321         112344667777764 56655433

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.23  E-value=0.083  Score=50.37  Aligned_cols=94  Identities=15%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .+|.|||+.| +|.++++.|..--.-+|..+.               +.+..|++        +.+..|+..   .+..+
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~---------------S~~~aG~~--------~~~~~p~~~---~~l~~   67 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLS---------------SRTYAGKK--------LEEIFPSTL---ENSIL   67 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE---------------CSTTTTSB--------HHHHCGGGC---CCCBC
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEe---------------CcccccCC--------hHHhChhhc---cCceE
Confidence            3699999755 899999999987655555543               33456653        333344432   12222


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                      .+.+..++++++|+|+.|+.+..++.+...+   .|..+|+.++
T Consensus        68 ~~~~~~~~~~~~Dvvf~alp~~~s~~~~~~~---~g~~VIDlSs  108 (351)
T 1vkn_A           68 SEFDPEKVSKNCDVLFTALPAGASYDLVREL---KGVKIIDLGA  108 (351)
T ss_dssp             BCCCHHHHHHHCSEEEECCSTTHHHHHHTTC---CSCEEEESSS
T ss_pred             EeCCHHHhhcCCCEEEECCCcHHHHHHHHHh---CCCEEEECCh
Confidence            2222334457899999999988887776655   6888998653

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=94.23  E-value=0.053  Score=48.99  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGV  117 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGv  117 (340)
                      ++.++|+|.|+ |.+|+.+++.|...|.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            56789999996 6799999999999986

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.22  E-value=0.3  Score=48.23  Aligned_cols=32  Identities=22%  Similarity=0.451  Sum_probs=28.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            69999999999999999999997 588888653

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=94.21  E-value=0.14  Score=45.60  Aligned_cols=82  Identities=16%  Similarity=0.175  Sum_probs=52.0

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+......  +..
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~~   67 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQ-------------------ENVDRTVATLQGEGLS--VTG   67 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCC--EEE
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCc--eEE
Confidence            4577888999985 5799999999999996 677776431                   2344445555554433  444


Q ss_pred             ecccCCc-ccHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRT-SNALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~-~~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++. +....+       +.+.|+||.+..
T Consensus        68 ~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag  100 (260)
T 2zat_A           68 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAA  100 (260)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4445543 222222       237899988764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.20  E-value=0.063  Score=50.84  Aligned_cols=34  Identities=38%  Similarity=0.509  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~  223 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI  223 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3578999999999999999888899888888764

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=94.20  E-value=0.18  Score=44.20  Aligned_cols=81  Identities=14%  Similarity=0.316  Sum_probs=49.4

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++++|+|.|+ |++|..+++.|+..|. ++.++|...                  ..+.+.+.+.+....+.  +..+.
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~------------------~~~~~~~~~~~~~~~~~--~~~~~   61 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPA------------------STSLDATAEEFKAAGIN--VVVAK   61 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTT------------------CSHHHHHHHHHHHTTCC--EEEEE
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcC------------------HHHHHHHHHHHHhcCCc--EEEEE
Confidence            56788999985 5799999999999996 566664211                  12344445555554433  44444


Q ss_pred             ccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          170 EALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      .+++. +...+.+       .+.|+||.+..
T Consensus        62 ~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag   92 (247)
T 2hq1_A           62 GDVKNPEDVENMVKTAMDAFGRIDILVNNAG   92 (247)
T ss_dssp             SCTTSHHHHHHHHHHHHHHHSCCCEEEECC-
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            45553 2222222       36888888764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.19  E-value=0.11  Score=46.60  Aligned_cols=83  Identities=13%  Similarity=0.286  Sum_probs=55.6

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++.. ..++..
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~   64 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRST-------------------ADIDACVADLDQLG-SGKVIG   64 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTS-SSCEEE
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhC-CCcEEE
Confidence            3577889999985 6799999999999997 677776432                   34555666666543 234555


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +.+.|++|.+..
T Consensus        65 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           65 VQTDVSDRAQCDALAGRAVEEFGGIDVVCANAG   97 (262)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            66666542 22222       237899998764

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=94.19  E-value=0.16  Score=47.03  Aligned_cols=73  Identities=21%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCC-CcEEEEeC--CcccccCCccccccCCCccCcccHHHHHHHHHhh---CCCceEEE
Q 019513           95 SILVIG-AGGLGSPALLYLAACGV-GRLGIVDH--DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---NSTVHIIE  167 (340)
Q Consensus        95 ~VlVvG-~GglGs~va~~La~aGv-g~i~lvD~--D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l---np~v~i~~  167 (340)
                      ||+|+| +|.+|+.++..|+..|. .++.|+|.  +.                   .|++..+..|...   ...+++..
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~-------------------~~~~~~~~dl~~~~~~~~~~~v~~   62 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKE-------------------DDTVGQAADTNHGIAYDSNTRVRQ   62 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGH-------------------HHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCCh-------------------hhHHHHHHHHHHHHhhCCCcEEEe
Confidence            799999 99999999999998885 45888875  21                   1222222333332   44556654


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      -       . .+.++++|+||.+...+
T Consensus        63 ~-------~-~~a~~~aDvVi~~ag~~   81 (303)
T 1o6z_A           63 G-------G-YEDTAGSDVVVITAGIP   81 (303)
T ss_dssp             C-------C-GGGGTTCSEEEECCCCC
T ss_pred             C-------C-HHHhCCCCEEEEcCCCC
Confidence            1       1 34478999999887643

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.18  E-value=0.12  Score=48.13  Aligned_cols=87  Identities=8%  Similarity=-0.007  Sum_probs=60.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ..+|+|+|+|.+|..+++.|...|.  ++++|.|.                   .+++ +    ++  ..+.  .+..+.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~-------------------~~~~-~----~~--~~~~--~i~gd~  164 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRKK-V----LR--SGAN--FVHGDP  164 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGG-------------------GHHH-H----HH--TTCE--EEESCT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCCh-------------------hhhh-H----Hh--CCcE--EEEeCC
Confidence            5689999999999999999999997  88888653                   1222 2    22  2333  333344


Q ss_pred             Cccc-HHhh-cccCcEEEEcCCChhhHHHHHHHHHHcCC
Q 019513          173 RTSN-ALEI-LSQYEIVVDATDNAPSRYMISDCCVVLGK  209 (340)
Q Consensus       173 ~~~~-~~~~-l~~~DlVi~~tD~~~~r~~i~~~~~~~~~  209 (340)
                      +... ..+. ++++|.|+.++++......+...+++.+.
T Consensus       165 ~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~  203 (336)
T 1lnq_A          165 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE  203 (336)
T ss_dssp             TSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHTTCT
T ss_pred             CCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHHHCC
Confidence            4332 2333 67899999999988777777777777765

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.17  E-value=0.17  Score=47.31  Aligned_cols=76  Identities=24%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             cEEEEc-CChhHHHHHHHHHHc-CC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           95 SILVIG-AGGLGSPALLYLAAC-GV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        95 ~VlVvG-~GglGs~va~~La~a-Gv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ||.|+| +|.+|..++..|+.. +. .+|.|+|-+.                    |++--+..|......+++..+.. 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~--------------------~~~G~a~Dl~~~~~~~~v~~~~~-   60 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP--------------------VTPGVAVDLSHIPTAVKIKGFSG-   60 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST--------------------THHHHHHHHHTSCSSEEEEEECS-
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC--------------------CchhHHHHhhCCCCCceEEEecC-
Confidence            799999 899999999999876 54 5899988532                    22222334444433445544321 


Q ss_pred             CCcccHHhhcccCcEEEEcCCCh
Q 019513          172 LRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                         .+..+.++++|+||.+...+
T Consensus        61 ---~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A           61 ---EDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             ---SCCHHHHTTCSEEEECCSCS
T ss_pred             ---CCcHHHhCCCCEEEEeCCCC
Confidence               22345678999999887654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.17  E-value=0.12  Score=47.11  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=25.0

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      +.+|+|.|+ |.+|+.+++.|...|. ++.+++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~   34 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLR   34 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEe
Confidence            468999996 7799999999999985 355554

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=94.16  E-value=0.11  Score=46.95  Aligned_cols=42  Identities=29%  Similarity=0.384  Sum_probs=31.1

Q ss_pred             CCHHHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           83 FGVEGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        83 ~G~~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|......|++++|+|.|+ ||+|..+++.|+..|. ++.++|.
T Consensus        17 ~g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   59 (266)
T 3grp_A           17 QGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGT   59 (266)
T ss_dssp             ----CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3444445688899999985 5799999999999996 5777664

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.14  E-value=0.075  Score=49.23  Aligned_cols=77  Identities=17%  Similarity=0.198  Sum_probs=55.1

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+.+++|+|||.|. +|.++|..|...| .++++++..                                          
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~hs~------------------------------------------  192 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAG-CTTTVTHRF------------------------------------------  192 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTT-CEEEEECSS------------------------------------------
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCC-CeEEEEeCC------------------------------------------
Confidence            57899999999997 6999999999999 568887411                                          


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                           ..+..+.++.+|+||.++..+..   |..--.+.|.-+|+.+..
T Consensus       193 -----t~~L~~~~~~ADIVI~Avg~p~l---I~~~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          193 -----TKNLRHHVENADLLIVAVGKPGF---IPGDWIKEGAIVIDVGIN  233 (288)
T ss_dssp             -----CSCHHHHHHHCSEEEECSCCTTC---BCTTTSCTTCEEEECCCE
T ss_pred             -----chhHHHHhccCCEEEECCCCcCc---CCHHHcCCCcEEEEccCC
Confidence                 13456677889999999987651   222222455556665543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.09  E-value=0.15  Score=47.77  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=30.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~  200 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEP  200 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            6789999999999999999999999878888764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=94.09  E-value=0.044  Score=51.52  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +-||+|||+|..|..+|..|++.|+ +++|+|.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            3589999999999999999999998 58999854

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=94.08  E-value=0.16  Score=47.65  Aligned_cols=34  Identities=9%  Similarity=0.013  Sum_probs=26.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D  126 (340)
                      ..+|.|||+|.+|...+..|... |+.-+.++|.+
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~   39 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRT   39 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCC
Confidence            35799999999999999999876 54444566643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.08  E-value=0.097  Score=48.42  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD  124 (340)
                      .|++++|+|||.|+ +|.++|..|...|. ++++++
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~h  192 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTH  192 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            57899999999988 89999999999997 577763

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=94.07  E-value=0.48  Score=43.42  Aligned_cols=106  Identities=18%  Similarity=0.185  Sum_probs=61.4

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHc---CC--CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           95 SILVIGA-GGLGSPALLYLAAC---GV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~a---Gv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +|+|.|+ |.+|+.+++.|+..   |+  .++.++|...-.. +.  .           +       +..+.....+..+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~-~~--~-----------~-------~~~~~~~~~~~~~   60 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAG-NR--A-----------N-------LAPVDADPRLRFV   60 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTC-CG--G-----------G-------GGGGTTCTTEEEE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccC-ch--h-----------h-------hhhcccCCCeEEE
Confidence            6999985 77999999999996   53  4788777532100 00  0           0       0111111223444


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCCChh-----------------hHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          169 REALRT-SNALEILSQYEIVVDATDNAP-----------------SRYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD~~~-----------------~r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      ..+++. +...+.+.++|+||.+.....                 .-..+.++|...++ .+|..++...+|
T Consensus        61 ~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg  132 (337)
T 1r6d_A           61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYG  132 (337)
T ss_dssp             ECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGC
T ss_pred             EcCCCCHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhC
Confidence            445553 345566788999998875321                 11234567777776 677776654444

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.05  E-value=0.083  Score=48.75  Aligned_cols=78  Identities=22%  Similarity=0.274  Sum_probs=55.9

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcC-CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      .|.+++|+|||.|. +|.++|..|...| -.++++.+..                                         
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~-----------------------------------------  193 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG-----------------------------------------  193 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT-----------------------------------------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc-----------------------------------------
Confidence            58999999999997 5999999999984 3668876311                                         


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                            ..+..+.++.+|+||.++..+..   |..--.+.|.-+|+.+..
T Consensus       194 ------t~~L~~~~~~ADIVI~Avg~p~~---I~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          194 ------TRDLPALTRQADIVVAAVGVAHL---LTADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             ------CSCHHHHHTTCSEEEECSCCTTC---BCGGGSCTTCEEEECCEE
T ss_pred             ------hhHHHHHHhhCCEEEECCCCCcc---cCHHHcCCCcEEEEccCC
Confidence                  14567778899999999987652   222223446666766544

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.05  E-value=0.28  Score=44.40  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=55.0

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+++.+.+....+.  .
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~--~   85 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARH-------------------SDALQVVADEIAGVGGKAL--P   85 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS-------------------GGGGHHHHHHHHHTTCCCE--E
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCCeEE--E
Confidence            3577889999985 6799999999999996 57777643                   1345566677776655443  3


Q ss_pred             ecccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          168 HREALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      +..+++. +...+++       ...|+||.+..
T Consensus        86 ~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg  118 (276)
T 3r1i_A           86 IRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAG  118 (276)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4445553 2223333       37899998764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=94.04  E-value=0.19  Score=45.26  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=30.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   44 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGA-RVVLADLP   44 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            577889999986 6799999999999996 58887754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.03  E-value=0.32  Score=43.84  Aligned_cols=95  Identities=16%  Similarity=0.181  Sum_probs=58.3

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-....+..    .  .-...+.+.+++.+.....  ++..
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~--~~~~   81 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTY----A--PASPEDLDETARLVEDQGR--KALT   81 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCS----C--CCCHHHHHHHHHHHHTTTC--CEEE
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccc----c--ccCHHHHHHHHHHHHhcCC--eEEE
Confidence            3578899999986 5799999999999996 57778754321111111    0  0122355566666666544  4445


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ...++       +...|++|.+..
T Consensus        82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           82 RVLDVRDDAALRELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            55555542 22222       347899998865

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=94.01  E-value=0.15  Score=47.96  Aligned_cols=36  Identities=22%  Similarity=0.079  Sum_probs=26.6

Q ss_pred             ccCCcEEEEcCChhHH-HHHHHHHHc-CCCcEEEEeCC
Q 019513           91 LLKSSILVIGAGGLGS-PALLYLAAC-GVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~GglGs-~va~~La~a-Gvg~i~lvD~D  126 (340)
                      ++.-+|.|||+|.+|. ..+..|... |+.-+.++|.+
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   62 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR   62 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            3456899999999998 788999887 54444566654

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=94.00  E-value=0.35  Score=49.62  Aligned_cols=110  Identities=13%  Similarity=0.141  Sum_probs=61.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~  167 (340)
                      .+++++|+|.|+ |.+|+.+++.|+..|. ++.++|...-.                ..   ...+.+..+ .+.+++  
T Consensus         8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~----------------~~---~~~~~l~~~~~~~v~~--   65 (699)
T 1z45_A            8 ESTSKIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNS----------------TY---DSVARLEVLTKHHIPF--   65 (699)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC----------------CT---HHHHHHHHHHTSCCCE--
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCcc----------------hH---HHHHHHhhccCCceEE--
Confidence            466789999995 7799999999999994 67777643200                00   111222222 233433  


Q ss_pred             ecccCCc-ccHHhhcc--cCcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          168 HREALRT-SNALEILS--QYEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       168 ~~~~~~~-~~~~~~l~--~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      +..+++. +...+.++  ++|+||.+......                 -..+-++|.+.++ .+|..++.+.+|
T Consensus        66 v~~Dl~d~~~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg  140 (699)
T 1z45_A           66 YEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYG  140 (699)
T ss_dssp             EECCTTCHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGC
T ss_pred             EEcCCCCHHHHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhC
Confidence            3334443 33445565  78999988654211                 1124456666664 577766655443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=93.99  E-value=0.21  Score=46.32  Aligned_cols=120  Identities=20%  Similarity=0.245  Sum_probs=69.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ++|.+||+|..|.++|.+|+++|. .++++|.+.-....+        .+.|-..+.+.++..+.  .++-+.....   
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l--------~~~Ga~~a~s~~e~~~~--~dvv~~~l~~---   69 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGL--------VAAGASAARSARDAVQG--ADVVISMLPA---   69 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHH--------HHTTCEECSSHHHHHTT--CSEEEECCSC---
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHH--------HHcCCEEcCCHHHHHhc--CCceeecCCc---
Confidence            479999999999999999999995 577776432111000        01233333333333322  2222222221   


Q ss_pred             cccHHh----------hcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEe
Q 019513          174 TSNALE----------ILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN  227 (340)
Q Consensus       174 ~~~~~~----------~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~  227 (340)
                      .....+          .+..=++|||++-. +..-..+.+.+.+.|+.|+++-+.|.     .|.+.++.
T Consensus        70 ~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imv  139 (300)
T 3obb_A           70 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMV  139 (300)
T ss_dssp             HHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEE
T ss_pred             hHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEE
Confidence            111111          22334688887655 55666788889999999998776654     36666654

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=93.98  E-value=0.12  Score=30.42  Aligned_cols=28  Identities=29%  Similarity=0.493  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019513            9 DVARVLGEIETLKAAKSDIDYRISALEA   36 (340)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~   36 (340)
                      ++..+.+||+.|+.|++.|+-+++.|++
T Consensus         3 eiaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            3 EIAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6777788888888888888888887765

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.97  E-value=0.38  Score=48.17  Aligned_cols=85  Identities=16%  Similarity=0.250  Sum_probs=62.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      .+|+|+|+|.+|..+++.|...|.. +.++|.|.-....+.                               ..+..+.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~-------------------------------~~i~gD~t  396 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQESPVCNDH-------------------------------VVVYGDAT  396 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCCSSCCSS-------------------------------CEEESCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECChHHHhhcC-------------------------------CEEEeCCC
Confidence            8999999999999999999999964 899998753322211                               12222223


Q ss_pred             cccH--HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCc
Q 019513          174 TSNA--LEILSQYEIVVDATDNAPSRYMISDCCVVLGKP  210 (340)
Q Consensus       174 ~~~~--~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p  210 (340)
                      ....  ..-++++|.+|.++++......+...+++.+.+
T Consensus       397 ~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~  435 (565)
T 4gx0_A          397 VGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSH  435 (565)
T ss_dssp             SSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCC
Confidence            2222  223578999999999988888888889888764

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=93.97  E-value=0.34  Score=44.22  Aligned_cols=31  Identities=39%  Similarity=0.506  Sum_probs=25.9

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++|+|.|+ |.+|+.+++.|+..| .++.++|.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   33 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDN   33 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeC
Confidence            47999985 779999999999999 46777764

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.95  E-value=0.061  Score=53.45  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      -.+|.|||+|.+|+.+|..|+.+|. .++++|.+.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            4689999999999999999999997 588887543

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=93.93  E-value=0.54  Score=47.12  Aligned_cols=40  Identities=25%  Similarity=0.306  Sum_probs=35.7

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHH----cCC------CcEEEEeCCcc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAA----CGV------GRLGIVDHDVV  128 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~----aGv------g~i~lvD~D~V  128 (340)
                      ++|++.+|++.|+|+.|..+|+.|..    .|+      ++|.++|..-+
T Consensus       278 k~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gl  327 (555)
T 1gq2_A          278 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL  327 (555)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCe
Confidence            58999999999999999999999998    896      79999997654

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=93.92  E-value=0.22  Score=44.12  Aligned_cols=87  Identities=18%  Similarity=0.252  Sum_probs=54.2

Q ss_pred             CCcEEEEcCChhHHHHHHH--HHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           93 KSSILVIGAGGLGSPALLY--LAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~--La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ..+|+|||+|.+|..++.+  +...|+.-+.++|.|.-              .+|+.           + ..+.|..   
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~--------------k~g~~-----------i-~gv~V~~---  135 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINES--------------KIGTE-----------V-GGVPVYN---  135 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTT--------------TTTCE-----------E-TTEEEEE---
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHH--------------HHHhH-----------h-cCCeeec---
Confidence            3689999999999999995  34567888889997641              12210           0 0122221   


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                         .++..++++.+|+|+.|+.+... ..+.+.|.+.|+.-|
T Consensus       136 ---~~dl~eli~~~D~ViIAvPs~~~-~ei~~~l~~aGi~~I  173 (215)
T 2vt3_A          136 ---LDDLEQHVKDESVAILTVPAVAA-QSITDRLVALGIKGI  173 (215)
T ss_dssp             ---GGGHHHHCSSCCEEEECSCHHHH-HHHHHHHHHTTCCEE
T ss_pred             ---hhhHHHHHHhCCEEEEecCchhH-HHHHHHHHHcCCCEE
Confidence               23456677666999988876443 467778888888755

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=93.90  E-value=0.27  Score=39.48  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=54.8

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ..+|+|+|+|+.|..++..|... |..-+.++|.|.-.   .++.+ .                      .+.+..    
T Consensus         4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~---~g~~i-~----------------------g~pV~g----   53 (141)
T 3nkl_A            4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKK---HKTTM-Q----------------------GITIYR----   53 (141)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGG---TTCEE-T----------------------TEEEEC----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCccc---CCCEe-c----------------------CeEEEC----
Confidence            46899999999999999999875 66667788865310   01100 0                      112211    


Q ss_pred             CCcccHHhhcc--cCcEEEEcCCCh--hhHHHHHHHHHHcCCcEEE
Q 019513          172 LRTSNALEILS--QYEIVVDATDNA--PSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       172 ~~~~~~~~~l~--~~DlVi~~tD~~--~~r~~i~~~~~~~~~p~i~  213 (340)
                        .++..++++  ..|.|+.|..+.  ..+..+.+.|...++.+..
T Consensus        54 --~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~   97 (141)
T 3nkl_A           54 --PKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLT   97 (141)
T ss_dssp             --GGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred             --HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence              122333332  467777777643  3445677788888887654

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=93.90  E-value=0.1  Score=51.42  Aligned_cols=94  Identities=16%  Similarity=0.092  Sum_probs=57.0

Q ss_pred             ccCCcEEEEcCChh--HHHHHHHHHHcC--CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCceE
Q 019513           91 LLKSSILVIGAGGL--GSPALLYLAACG--VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHI  165 (340)
Q Consensus        91 L~~~~VlVvG~Ggl--Gs~va~~La~aG--vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v~i  165 (340)
                      +++.+|.|||+|++  |..++..|+..-  .++|.|+|-|.                   .+++........+. ...+|
T Consensus         3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~-------------------e~le~~~~~~~~l~~~~~~I   63 (450)
T 3fef_A            3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDF-------------------EAAQKNEVIGNHSGNGRWRY   63 (450)
T ss_dssp             CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSH-------------------HHHHHHHHHHTTSTTSCEEE
T ss_pred             CCCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCH-------------------HHHHHHHHHHHHHhccCCeE
Confidence            35568999999996  688998888622  34899998653                   11111111111110 22333


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcC--CChhhHHHHHHHHHHcCC
Q 019513          166 IEHREALRTSNALEILSQYEIVVDAT--DNAPSRYMISDCCVVLGK  209 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~t--D~~~~r~~i~~~~~~~~~  209 (340)
                      .+      ..+..+.++++|+||.+.  ...+.|..=.+...++|+
T Consensus        64 ~~------TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~  103 (450)
T 3fef_A           64 EA------VSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGI  103 (450)
T ss_dssp             EE------ESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTC
T ss_pred             EE------ECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCc
Confidence            22      134456789999999998  445566555556677766

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.89  E-value=0.08  Score=49.10  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=26.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|+|+|+|++|+.++..|+ +| ..+++++.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g-~~V~~~~r~   33 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LY-HDVTVVTRR   33 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TT-SEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cC-CceEEEECC
Confidence            57999999999999999999 88 468887643

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.86  E-value=0.02  Score=56.66  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+|.|||+|.+|+.+|..|+.+|. .++++|.+.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcH
Confidence            689999999999999999999997 688988653

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.83  E-value=0.34  Score=43.60  Aligned_cols=94  Identities=17%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-..+.+.+.      .-...+.+.+.+.+...++.  +..+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~   78 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYD------PASPDDLSETVRLVEAANRR--IVAA   78 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSC------CCCHHHHHHHHHHHHHTTCC--EEEE
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEecccccccccccc------ccCHHHHHHHHHHHHhcCCe--EEEE
Confidence            578889999986 5799999999999997 578887643222211111      01223455555666665544  4445


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ...++       +...|++|.+..
T Consensus        79 ~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg  110 (277)
T 3tsc_A           79 VVDTRDFDRLRKVVDDGVAALGRLDIIVANAG  110 (277)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555542 22222       346899998864

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.81  E-value=0.2  Score=46.98  Aligned_cols=32  Identities=34%  Similarity=0.454  Sum_probs=27.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .+.+|+|+|+|++|..++..+...|.. +..+|
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~  199 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTA  199 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEc
Confidence            457899999999999999988889986 77766

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=93.81  E-value=0.14  Score=47.62  Aligned_cols=31  Identities=32%  Similarity=0.488  Sum_probs=27.3

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~  125 (340)
                      ||+|+|+ |.+|+.++..|+..|. .++.|+|.
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            7999999 9999999999998886 45898884

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.79  E-value=0.28  Score=43.76  Aligned_cols=35  Identities=20%  Similarity=0.188  Sum_probs=28.7

Q ss_pred             cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|++   |+|..+++.|+..|.. +.++|.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r   41 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYA   41 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecC
Confidence            4678899999974   3999999999999974 667664

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.79  E-value=0.32  Score=43.35  Aligned_cols=81  Identities=20%  Similarity=0.285  Sum_probs=52.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+....  .++..+
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~   63 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQ-------------------KELNDCLTQWRSKG--FKVEAS   63 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTT--CEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            367788999985 5799999999999996 577776432                   23444455555443  344555


Q ss_pred             cccCCcc-cHHhhc--------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL--------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l--------~~~DlVi~~tD  192 (340)
                      ..+++.. ...+++        ...|+||.+..
T Consensus        64 ~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   96 (260)
T 2ae2_A           64 VCDLSSRSERQELMNTVANHFHGKLNILVNNAG   96 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            5555542 222222        46899988765

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.78  E-value=0.3  Score=43.54  Aligned_cols=35  Identities=23%  Similarity=0.473  Sum_probs=29.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            467889999986 5799999999999996 5777664

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=93.76  E-value=0.32  Score=45.62  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D  126 (340)
                      ..+|.|||+|.+|...+..|...  |+.-+.++|.+
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~   48 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDID   48 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSS
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            35799999999999999999987  55445566643

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=93.76  E-value=0.14  Score=49.29  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=65.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC-------
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS-------  161 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp-------  161 (340)
                      ....++|+|.|+ |++|+.+++.|+..|. ++.+++...-                .....+.+.+.+....+       
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~----------------~~~~~~~l~~~l~~~~~~~~~~~~  128 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN----------------EEIAWYKLMTNLNDYFSEETVEMM  128 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSS----------------HHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCC----------------hHHHHHHHHHHHHHhccccccccc
Confidence            344568999997 6799999999987774 5666543210                00122233333333321       


Q ss_pred             CceEEEecccCCc-ccHHhhcccCcEEEEcCCChh--------------hHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513          162 TVHIIEHREALRT-SNALEILSQYEIVVDATDNAP--------------SRYMISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       162 ~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~tD~~~--------------~r~~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                      ...+..+..+++. +... .+.++|+||.+.....              .-..+.++|......+|..++.+. |.
T Consensus       129 ~~~v~~v~~Dl~d~~~l~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~  202 (427)
T 4f6c_A          129 LSNIEVIVGDFECMDDVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GT  202 (427)
T ss_dssp             HTTEEEEEECC---CCCC-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GS
T ss_pred             cCceEEEeCCCCCcccCC-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CC
Confidence            1234445555554 2222 5678999999865321              112345566666778888777666 54

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.73  E-value=0.22  Score=48.72  Aligned_cols=36  Identities=17%  Similarity=0.099  Sum_probs=29.2

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..+-.+|.|||+|.+|..+|..|+. | -+++++|.+.
T Consensus        33 ~~~~mkIaVIGlG~mG~~lA~~La~-G-~~V~~~D~~~   68 (432)
T 3pid_A           33 GSEFMKITISGTGYVGLSNGVLIAQ-N-HEVVALDIVQ   68 (432)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHT-T-SEEEEECSCH
T ss_pred             ccCCCEEEEECcCHHHHHHHHHHHc-C-CeEEEEecCH
Confidence            3444689999999999999999998 8 4688888664

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.71  E-value=0.25  Score=44.88  Aligned_cols=83  Identities=18%  Similarity=0.276  Sum_probs=53.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC---CCceE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN---STVHI  165 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln---p~v~i  165 (340)
                      .|++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+....   ...++
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   74 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKL-------------------ERLKSAADELQANLPPTKQARV   74 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTSCTTCCCCE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhccccCCccE
Confidence            577889999985 5799999999999995 577776431                   23445555555421   13345


Q ss_pred             EEecccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          166 IEHREALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+..+++.. ....++       ...|+||.+..
T Consensus        75 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           75 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGG  109 (303)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5565666542 222333       35899998765

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=93.69  E-value=0.17  Score=44.62  Aligned_cols=82  Identities=15%  Similarity=0.338  Sum_probs=53.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                  ..+.+.+.+.+.....  ++..+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~--~~~~~   62 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKA------------------PANIDETIASMRADGG--DAAFF   62 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------CTTHHHHHHHHHHTTC--EEEEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCc------------------hhhHHHHHHHHHhcCC--ceEEE
Confidence            367788999986 6799999999999996 577776431                  1234455555655433  45555


Q ss_pred             cccCCc-ccHHhhcc-------cCcEEEEcCC
Q 019513          169 REALRT-SNALEILS-------QYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~-------~~DlVi~~tD  192 (340)
                      ..+++. +...+.++       +.|+||.+..
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~g~id~vi~~Ag   94 (258)
T 3afn_B           63 AADLATSEACQQLVDEFVAKFGGIDVLINNAG   94 (258)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            555554 23333333       7899998765

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=93.68  E-value=0.15  Score=45.52  Aligned_cols=96  Identities=14%  Similarity=0.161  Sum_probs=57.1

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHc--CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           95 SILVIGA-GGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +|+|.|+ |.+|+.+++.|...  |. ++.+++.+.-                   +...    +..  +.++  .+..+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~-------------------~~~~----~~~--~~~~--~~~~D   52 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPA-------------------KAQA----LAA--QGIT--VRQAD   52 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTT-------------------TCHH----HHH--TTCE--EEECC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChH-------------------hhhh----hhc--CCCe--EEEcC
Confidence            5899997 77999999999987  74 6777764310                   1111    111  2333  33344


Q ss_pred             CCc-ccHHhhcccCcEEEEcCCCh-----hhHHHHHHHHHHcCC-cEEEEeecC
Q 019513          172 LRT-SNALEILSQYEIVVDATDNA-----PSRYMISDCCVVLGK-PLVSGAALG  218 (340)
Q Consensus       172 ~~~-~~~~~~l~~~DlVi~~tD~~-----~~r~~i~~~~~~~~~-p~i~~~~~g  218 (340)
                      ++. +...+.++++|+||.+....     ..-..+-++|.+.++ .+|..++.+
T Consensus        53 ~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           53 YGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             TTCHHHHHHHTTTCSEEEECC--------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            443 44566778899999876531     222345567777775 466665543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=93.68  E-value=0.5  Score=38.58  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=27.1

Q ss_pred             HHHcccCCcEEEEcC----ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           87 GQSNLLKSSILVIGA----GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~----GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +..-++..+|+|||+    |.+|..++++|...|. ++.-+|.
T Consensus         8 ~~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-~V~~vnp   49 (138)
T 1y81_A            8 GSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGF-EVLPVNP   49 (138)
T ss_dssp             ------CCEEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECT
T ss_pred             cccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC-EEEEeCC
Confidence            445577889999999    9999999999999998 3444443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=93.66  E-value=0.39  Score=44.64  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=25.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHH-H-cCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLA-A-CGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La-~-aGvg~i~lvD~D  126 (340)
                      ..+|+|||+|.+|...+..|. . .|+.-+.++|.+
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~   43 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD   43 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSC
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            357999999999999999988 4 354444566643

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.66  E-value=0.21  Score=49.12  Aligned_cols=42  Identities=24%  Similarity=0.356  Sum_probs=33.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCcc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR  135 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~R  135 (340)
                      +-+|.|||+|.+|.++|..|+..|. +++++|.|.-....+++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~kv~~l~~   49 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDARKIELLHQ   49 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHhc
Confidence            5689999999999999999999995 68899976544444443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.65  E-value=0.12  Score=47.15  Aligned_cols=81  Identities=12%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+...  ..++..+
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~--~~~~~~~   62 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARN-------------------GNALAELTDEIAGG--GGEAAAL   62 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSC-------------------HHHHHHHHHHHTTT--TCCEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhc--CCcEEEE
Confidence            467888999986 6799999999999996 47776543                   12444455555433  3345556


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ....+       +...|++|.+..
T Consensus        63 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg   94 (280)
T 3tox_A           63 AGDVGDEALHEALVELAVRRFGGLDTAFNNAG   94 (280)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6566542 22222       236898888765

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.62  E-value=0.13  Score=45.77  Aligned_cols=96  Identities=17%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ++|+|.|+ |++|+.+++.|+..| .++.++|.+.-.  .           .   +            +.  +..+..++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~--~-----------~---~------------~~--~~~~~~Dl   51 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLG--A-----------A---E------------AH--EEIVACDL   51 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCC--C-----------C---C------------TT--EEECCCCT
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCcc--c-----------c---C------------CC--ccEEEccC
Confidence            47999997 789999999999998 457766543210  0           0   0            11  33444445


Q ss_pred             Cc-ccHHhhcccCcEEEEcCCC-----hh--------hHHHHHHHHHHcCC-cEEEEeecCce
Q 019513          173 RT-SNALEILSQYEIVVDATDN-----AP--------SRYMISDCCVVLGK-PLVSGAALGLE  220 (340)
Q Consensus       173 ~~-~~~~~~l~~~DlVi~~tD~-----~~--------~r~~i~~~~~~~~~-p~i~~~~~g~~  220 (340)
                      +. +...+.+++.|+||.+...     ..        .-..+-+++.+.+. .+|..++...+
T Consensus        52 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~  114 (267)
T 3ay3_A           52 ADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTI  114 (267)
T ss_dssp             TCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGS
T ss_pred             CCHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHh
Confidence            43 3455667789999987532     11        11234566776665 56766655433

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=93.60  E-value=0.21  Score=45.83  Aligned_cols=82  Identities=17%  Similarity=0.313  Sum_probs=53.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+ .++..+
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~-~~~~~~   96 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSP-------------------RELSSVTAELGELGA-GNVIGV   96 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGGHHHHHHHTTSSS-SCEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhhCC-CcEEEE
Confidence            467888999986 5799999999999997 688877542                   244555555655432 345555


Q ss_pred             cccCCcc-cHH-------hhcccCcEEEEcCC
Q 019513          169 REALRTS-NAL-------EILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~-------~~l~~~DlVi~~tD  192 (340)
                      ..+++.. ...       +.+...|+||.+..
T Consensus        97 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  128 (293)
T 3rih_A           97 RLDVSDPGSCADAARTVVDAFGALDVVCANAG  128 (293)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5556542 222       22346788888754

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.58  E-value=0.22  Score=44.08  Aligned_cols=79  Identities=14%  Similarity=0.178  Sum_probs=50.0

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      ++++|+|.|+ |++|.++++.|+. .|. ++.+++.+.                   .+.+.+.+.+......+.  .+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~--~~~   60 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDV-------------------TRGQAAVQQLQAEGLSPR--FHQ   60 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSH-------------------HHHHHHHHHHHHTTCCCE--EEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCCh-------------------HHHHHHHHHHHhcCCeeE--EEE
Confidence            4678888885 6799999999999 896 677776432                   234455555655544443  344


Q ss_pred             ccCCc-ccHHhhcc-------cCcEEEEcCC
Q 019513          170 EALRT-SNALEILS-------QYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~-~~~~~~l~-------~~DlVi~~tD  192 (340)
                      .+++. +....+++       +.|+||.+..
T Consensus        61 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag   91 (276)
T 1wma_A           61 LDIDDLQSIRALRDFLRKEYGGLDVLVNNAG   91 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            44543 22333332       7899988764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.57  E-value=0.46  Score=44.31  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             CcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~-va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ++|.|||.|+.|-. +|..|...|. ++++.|...-.                 +    ..+.|++.  .+++..-   .
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~~~-----------------~----~~~~L~~~--gi~v~~g---~   57 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKMYP-----------------P----MSTQLEAL--GIDVYEG---F   57 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSCCT-----------------T----HHHHHHHT--TCEEEES---C
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCCCc-----------------H----HHHHHHhC--CCEEECC---C
Confidence            68999999999985 8999999995 58888853210                 0    23445554  4544321   1


Q ss_pred             CcccHHhhc-ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          173 RTSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l-~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      .+   ..+. .++|+||....-++....+. .+++.|+|+++
T Consensus        58 ~~---~~l~~~~~d~vV~Spgi~~~~p~~~-~a~~~gi~v~~   95 (326)
T 3eag_A           58 DA---AQLDEFKADVYVIGNVAKRGMDVVE-AILNLGLPYIS   95 (326)
T ss_dssp             CG---GGGGSCCCSEEEECTTCCTTCHHHH-HHHHTTCCEEE
T ss_pred             CH---HHcCCCCCCEEEECCCcCCCCHHHH-HHHHcCCcEEe
Confidence            11   2233 47999997765443333333 45667777765

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.56  E-value=0.21  Score=44.87  Aligned_cols=83  Identities=16%  Similarity=0.313  Sum_probs=51.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v~i~~  167 (340)
                      .+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+++.+.... ...++..
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   62 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHA-------------------ERLEETRQQILAAGVSEQNVNS   62 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcccCCCceeE
Confidence            366788888885 6799999999999996 577776432                   23334444442211 2234555


Q ss_pred             ecccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          168 HREALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      +..+++.. .....+       .+.|+||.+..
T Consensus        63 ~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   95 (278)
T 1spx_A           63 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAG   95 (278)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EecccCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            55555542 223333       37898888764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.55  E-value=0.24  Score=45.84  Aligned_cols=94  Identities=20%  Similarity=0.310  Sum_probs=60.6

Q ss_pred             HHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           87 GQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      ....|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.-    +.+.     ..-...+.+.+.+.+....+  ++
T Consensus        21 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~--~~   88 (322)
T 3qlj_A           21 SMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVG----LDGS-----PASGGSAAQSVVDEITAAGG--EA   88 (322)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBC----TTSS-----BTCTTSHHHHHHHHHHHTTC--EE
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCccc----cccc-----ccccHHHHHHHHHHHHhcCC--cE
Confidence            345678889999985 6799999999999996 6888876531    1111     11223466677777776654  45


Q ss_pred             EEecccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          166 IEHREALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+..+++.. ....++       ...|+||.+..
T Consensus        89 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           89 VADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             EEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5566666642 222233       37899998765

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.55  E-value=0.29  Score=43.47  Aligned_cols=39  Identities=21%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             HHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           87 GQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ....+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus        13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~   52 (249)
T 1o5i_A           13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARN   52 (249)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             HHhccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            456788999999986 6799999999999996 57777754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.55  E-value=0.11  Score=49.32  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=29.5

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  228 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI  228 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3578999999999999999988999888888763

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=93.54  E-value=0.25  Score=46.02  Aligned_cols=34  Identities=12%  Similarity=0.011  Sum_probs=25.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~  125 (340)
                      +..+|.|||+|.+|...+..|... ++.-+.++|.
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~   38 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASR   38 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCS
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeC
Confidence            345899999999999999999885 4333335553

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=93.52  E-value=0.4  Score=44.45  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=25.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|...+..|... |+.-+.++|.+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~   37 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAF   37 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCC
Confidence            4799999999999999999985 54444466643

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.51  E-value=0.1  Score=49.45  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  224 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT  224 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3578999999999999999888899888888763

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=93.51  E-value=0.13  Score=48.31  Aligned_cols=32  Identities=22%  Similarity=0.184  Sum_probs=27.3

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++|+|.|+ |++|+.+++.|+..|. ++.++|.+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecC
Confidence            67999997 7799999999999994 67777754

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=93.51  E-value=0.56  Score=46.50  Aligned_cols=92  Identities=13%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             CCcEEEEcCChh--HHHHHHHHHHc-C--CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHH----HHhhCCCc
Q 019513           93 KSSILVIGAGGL--GSPALLYLAAC-G--VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT----CRSINSTV  163 (340)
Q Consensus        93 ~~~VlVvG~Ggl--Gs~va~~La~a-G--vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~----L~~lnp~v  163 (340)
                      ..+|.|||+|++  |+.++..|+.. +  ..++.|+|-|.                   .|++.+...    +.......
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~-------------------e~l~~~~~~~~~~l~~~~~~~   63 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE-------------------ERLDAILTIAKKYVEEVGADL   63 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH-------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCCc
Confidence            468999999996  56667788743 2  46899998543                   233333222    22333344


Q ss_pred             eEEEecccCCcccHHhhcccCcEEEEcCCChhh--HHHHHHHHHHcCC
Q 019513          164 HIIEHREALRTSNALEILSQYEIVVDATDNAPS--RYMISDCCVVLGK  209 (340)
Q Consensus       164 ~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~--r~~i~~~~~~~~~  209 (340)
                      +|...      .+..+.++++|+||.++.....  +....+...+++.
T Consensus        64 ~I~~t------tD~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~  105 (480)
T 1obb_A           64 KFEKT------MNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGY  105 (480)
T ss_dssp             EEEEE------SCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTC
T ss_pred             EEEEE------CCHHHHhCCCCEEEECCCccccccccccccccccccc
Confidence            55442      2334557899999999876433  3233444555554

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=93.51  E-value=0.27  Score=45.98  Aligned_cols=32  Identities=28%  Similarity=0.203  Sum_probs=24.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~  125 (340)
                      -+|.|||+|.+|...+..|... ++.-+.++|.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~   35 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDV   35 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            3799999999999999999874 4433345554

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=93.50  E-value=0.2  Score=44.60  Aligned_cols=39  Identities=15%  Similarity=0.036  Sum_probs=31.6

Q ss_pred             HHHHcccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           86 EGQSNLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        86 ~~q~~L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .....+++++|+|.|+   ||+|..+++.|+..|. ++.++|.
T Consensus         7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r   48 (271)
T 3ek2_A            7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYV   48 (271)
T ss_dssp             --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEec
Confidence            3455788999999996   5899999999999996 6777764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.50  E-value=0.073  Score=49.16  Aligned_cols=72  Identities=15%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .|.+++|+|||+|.+|..+++.|...|. +++++|...                   .|.+.    +.+.  .+++  +.
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~-------------------~~~~~----~~~~--g~~~--~~  205 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSS-------------------AHLAR----ITEM--GLVP--FH  205 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHH----HHHT--TCEE--EE
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHH----HHHC--CCeE--Ec
Confidence            5788999999999999999999999997 788887532                   12221    1222  2221  11


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                          ..+..+.++.+|+|+.++..
T Consensus       206 ----~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          206 ----TDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             ----GGGHHHHSTTCSEEEECCSS
T ss_pred             ----hhhHHHHhhCCCEEEECCCh
Confidence                13456778899999999875

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=93.50  E-value=0.11  Score=46.42  Aligned_cols=81  Identities=15%  Similarity=0.340  Sum_probs=51.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+...  ++..+
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~   60 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTK-------------------EKLEEAKLEIEQFPG--QILTV   60 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHCCSTT--CEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--cEEEE
Confidence            477888999986 6799999999999996 477776432                   234445555544333  44455


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ....++       ...|++|.+..
T Consensus        61 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg   92 (257)
T 3imf_A           61 QMDVRNTDDIQKMIEQIDEKFGRIDILINNAA   92 (257)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555542 222222       36788888764

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=93.50  E-value=0.23  Score=46.21  Aligned_cols=36  Identities=8%  Similarity=0.053  Sum_probs=26.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcC-CCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACG-VGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~  127 (340)
                      +.-+|.|||+|.+|...+..|...+ +.-+.++|.+.
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~   40 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTL   40 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCS
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            3457999999999999999998764 33344666543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.48  E-value=0.22  Score=49.24  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+.+|.|||+|.+|..+|..|+..|. +++++|.|.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            35689999999999999999999996 689998764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.45  E-value=0.36  Score=43.47  Aligned_cols=96  Identities=14%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             HHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           87 GQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      ....|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.-..  ...     .......+.+...+.+.....  ++
T Consensus         4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~--~~   73 (281)
T 3s55_A            4 SMADFEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSD--VVG-----YPLATADDLAETVALVEKTGR--RC   73 (281)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCT--TCS-----SCCCCHHHHHHHHHHHHHTTC--CE
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCcccc--ccc-----cccccHHHHHHHHHHHHhcCC--eE
Confidence            345688899999985 6799999999999996 488888642110  000     001112344445555555544  34


Q ss_pred             EEecccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          166 IEHREALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+..+++.. ....++       ...|++|.+..
T Consensus        74 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           74 ISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            4555556542 222222       47899998765

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.45  E-value=0.19  Score=45.51  Aligned_cols=81  Identities=23%  Similarity=0.314  Sum_probs=53.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+++..+.  +..+
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~--~~~~   80 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTD-------------------PSRVAQTVQEFRNVGHD--AEAV   80 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSC-------------------HHHHHHHHHHHHHTTCC--EEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCCc--eEEE
Confidence            477888999986 6799999999999996 56665532                   23455666666665543  4455


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ...+++       .+.|+||.+..
T Consensus        81 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  112 (271)
T 4ibo_A           81 AFDVTSESEIIEAFARLDEQGIDVDILVNNAG  112 (271)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHTCCCCEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            5555542 222222       36899888765

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=93.44  E-value=0.57  Score=47.32  Aligned_cols=75  Identities=16%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHH----cCC------CcEEEEeCCcccc---cCCccc--cccCCCccCcccHHHHH
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAA----CGV------GRLGIVDHDVVEL---NNMHRQ--VIHTEPYIGQSKVKSAA  153 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~----aGv------g~i~lvD~D~Ve~---sNL~Rq--~l~~~~diG~~Ka~~a~  153 (340)
                      ++|++.+|++.|+|+.|..+|+.|..    .|+      ++|.++|..-+=.   .+|+.+  .|.....    ....+.
T Consensus       316 k~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A~~~~----~~~~L~  391 (605)
T 1o0s_A          316 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMP----ETTSIL  391 (605)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSC----CCCCHH
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHHhhcC----CCCCHH
Confidence            48899999999999999999999998    896      6999999765421   223322  1111111    011366


Q ss_pred             HHHHhhCCCceEEE
Q 019513          154 ATCRSINSTVHIIE  167 (340)
Q Consensus       154 ~~L~~lnp~v~i~~  167 (340)
                      +.++.+.|++-|-.
T Consensus       392 eav~~vkpdVlIG~  405 (605)
T 1o0s_A          392 EVIRAARPGALIGA  405 (605)
T ss_dssp             HHHHHHCCSEEEEC
T ss_pred             HHHhhcCCCEEEEe
Confidence            66666666665543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=93.44  E-value=0.31  Score=47.89  Aligned_cols=102  Identities=22%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec-
Q 019513           92 LKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR-  169 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~-  169 (340)
                      +.-||.|||+|.+|...+..+... |+.-..+.|.+                   ..|++.+++.+-  .+.-.+.... 
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~-------------------~era~~~a~~~y--G~~~~~~~~~~   80 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARR-------------------LPNTFKAIRTAY--GDEENAREATT   80 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSS-------------------THHHHHHHHHHH--SSSTTEEECSS
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCC-------------------HHHHHHHHHHhc--CCccccccccc
Confidence            345799999999999999887653 33334444432                   223333332220  1100010000 


Q ss_pred             -----------ccCCcccHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          170 -----------EALRTSNALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       170 -----------~~~~~~~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                                 ......+..+++.  +.|+|++||.++.....+...|.+.|+.++..
T Consensus        81 ~~~i~~a~~~g~~~v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~  138 (446)
T 3upl_A           81 ESAMTRAIEAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMM  138 (446)
T ss_dssp             HHHHHHHHHTTCEEEESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             hhhhhhhhccCCceEECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEec
Confidence                       0000234456664  58999999988776677778888899988853

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.44  E-value=0.11  Score=48.52  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=28.5

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|. ++..+|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~  198 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDI  198 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            46789999999999999999999998 7777663

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=93.44  E-value=0.38  Score=47.88  Aligned_cols=29  Identities=24%  Similarity=0.185  Sum_probs=26.9

Q ss_pred             HHHcccC-CcEEEEcCChhHHHHHHHHHHc
Q 019513           87 GQSNLLK-SSILVIGAGGLGSPALLYLAAC  115 (340)
Q Consensus        87 ~q~~L~~-~~VlVvG~GglGs~va~~La~a  115 (340)
                      ..+.|++ ++|.|||+|.+|..+|++|..+
T Consensus        47 ~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s   76 (525)
T 3fr7_A           47 LPEAFKGIKQIGVIGWGSQGPAQAQNLRDS   76 (525)
T ss_dssp             HHHHTTTCSEEEEECCTTHHHHHHHHHHHH
T ss_pred             ChHHhcCCCEEEEEeEhHHHHHHHHHHHhc
Confidence            3678899 9999999999999999999998

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.43  E-value=0.19  Score=44.82  Aligned_cols=82  Identities=13%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|...                  ..+.+.+.+.++...+.  +..+
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~l~~~~~~--~~~~   76 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSS------------------SKAAEEVVAELKKLGAQ--GVAI   76 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCc------------------hHHHHHHHHHHHhcCCc--EEEE
Confidence            356788999985 6799999999999995 566665411                  12344455556555444  3444


Q ss_pred             cccCCc-ccHHhhcc-------cCcEEEEcCC
Q 019513          169 REALRT-SNALEILS-------QYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~-------~~DlVi~~tD  192 (340)
                      ..+++. +....+++       +.|+||.+..
T Consensus        77 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag  108 (274)
T 1ja9_A           77 QADISKPSEVVALFDKAVSHFGGLDFVMSNSG  108 (274)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            445553 22333333       7899987764

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=93.42  E-value=0.31  Score=48.24  Aligned_cols=93  Identities=15%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             cCCcEEEEcCChh-HHHHHHHHHHc--CC--CcEEEEeCCcccccCCccccccCCCccCcccHHHH----HHHHHhhCCC
Q 019513           92 LKSSILVIGAGGL-GSPALLYLAAC--GV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA----AATCRSINST  162 (340)
Q Consensus        92 ~~~~VlVvG~Ggl-Gs~va~~La~a--Gv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a----~~~L~~lnp~  162 (340)
                      +..+|.|||+|++ |..++..|+..  +.  .+|.|+|.|.                   .|++..    ...+......
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~-------------------e~~~~~~~~~~~~l~~~~~~   87 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-------------------ERQDRIAGACDVFIREKAPD   87 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-------------------HHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCC
Confidence            3468999999998 66677788887  65  5699998543                   222222    2223344555


Q ss_pred             ceEEEecccCCcccHHhhcccCcEEEEcCCChhh--HHHHHHHHHHcCC
Q 019513          163 VHIIEHREALRTSNALEILSQYEIVVDATDNAPS--RYMISDCCVVLGK  209 (340)
Q Consensus       163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~--r~~i~~~~~~~~~  209 (340)
                      .+|...      .+..+.++++|+||.++.....  +..-.....++|+
T Consensus        88 ~~I~~t------~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~  130 (472)
T 1u8x_X           88 IEFAAT------TDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGV  130 (472)
T ss_dssp             SEEEEE------SCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             CEEEEE------CCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCc
Confidence            666543      2334567899999999876432  2233334444444

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.41  E-value=0.22  Score=48.05  Aligned_cols=31  Identities=29%  Similarity=0.294  Sum_probs=27.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +|.|||+|.+|..+|..|+. | .+++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G-~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-Q-NEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T-SEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-C-CEEEEEECCH
Confidence            69999999999999999999 8 5799998754

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.41  E-value=0.26  Score=44.01  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             cccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++|+|.|+   ||+|..+++.|+..|. ++.++|.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r   42 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQ   42 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcC
Confidence            366788999998   5899999999999995 5777764

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=93.40  E-value=0.14  Score=46.22  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=25.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEE-EEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLG-IVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~-lvD~D  126 (340)
                      -||+|+|+|.+|..+++.+...+- +|. ++|.+
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~   36 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENT   36 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSS
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecC
Confidence            579999999999999999998875 554 35643

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=93.40  E-value=0.2  Score=44.44  Aligned_cols=35  Identities=34%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|++++|+|.|+ ||+|..+++.|+..|. ++.++|.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r   38 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDI   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            578899999986 6799999999999996 4777664

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=93.39  E-value=0.15  Score=34.95  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019513            8 TDVARVLGEIETLKAAKSDIDYRISALEAQLRD   40 (340)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   40 (340)
                      ++++.|..|.++|++++++|..++++|+++|..
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            588999999999999999999999999999873

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.38  E-value=0.32  Score=45.81  Aligned_cols=89  Identities=16%  Similarity=0.261  Sum_probs=57.6

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.-....+            ..+.+.+++.+.....  ++..
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l------------~~~l~~~~~~~~~~g~--~~~~  105 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKL------------LGTIYTAAEEIEAVGG--KALP  105 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSS------------CCCHHHHHHHHHHTTC--EEEE
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhh------------HHHHHHHHHHHHhcCC--eEEE
Confidence            4688999999986 6799999999999996 688887653211111            1134555666666543  4555


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +...|+||.+..
T Consensus       106 ~~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          106 CIVDVRDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            55556542 22222       247899998765

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=93.38  E-value=0.36  Score=42.72  Aligned_cols=81  Identities=20%  Similarity=0.273  Sum_probs=52.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.....  ++..+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~   61 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAARRV-------------------EKLRALGDELTAAGA--KVHVL   61 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcCC--cEEEE
Confidence            367788999985 5799999999999996 577776431                   244555556655433  44455


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ....+       +.+.|+||.+..
T Consensus        62 ~~Dv~~~~~~~~~~~~~~~~~g~id~lv~nAg   93 (247)
T 2jah_A           62 ELDVADRQGVDAAVASTVEALGGLDILVNNAG   93 (247)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555542 22222       247899998754

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=93.37  E-value=0.19  Score=46.43  Aligned_cols=110  Identities=14%  Similarity=0.174  Sum_probs=61.4

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ++.+|+|+|+ |..|..++++|...|+.-+..||+..-..           ...|.+-...+.+.+.+..+++-+...+.
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~-----------~~~G~~vy~sl~el~~~~~~D~viI~tP~   74 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT-----------THLGLPVFNTVREAVAATGATASVIYVPA   74 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC-----------EETTEEEESSHHHHHHHHCCCEEEECCCG
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc-----------eeCCeeccCCHHHHhhcCCCCEEEEecCH
Confidence            3578999999 99999999999999976444666532100           01232222223333443355655555444


Q ss_pred             cCCcccHHhhc-ccCcEEEEcCCChhh--HHHHHHHHHHcCCcEE
Q 019513          171 ALRTSNALEIL-SQYEIVVDATDNAPS--RYMISDCCVVLGKPLV  212 (340)
Q Consensus       171 ~~~~~~~~~~l-~~~DlVi~~tD~~~~--r~~i~~~~~~~~~p~i  212 (340)
                      ....+...+.+ .+..++|..+..++.  ...+.++++++++.++
T Consensus        75 ~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~li  119 (288)
T 2nu8_A           75 PFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  119 (288)
T ss_dssp             GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            43333334433 345654444443322  3356777777777654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=93.37  E-value=0.15  Score=46.34  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=33.9

Q ss_pred             CCHHHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           83 FGVEGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        83 ~G~~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |.......|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         6 ~~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~   49 (291)
T 3rd5_A            6 WTAADLPSFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRD   49 (291)
T ss_dssp             CCGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            4444445678899999986 6799999999999995 68887754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.36  E-value=0.14  Score=48.57  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=29.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  224 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI  224 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3578999999999999999999999888888763

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=93.35  E-value=0.37  Score=45.42  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=26.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHH-H-cCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLA-A-CGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La-~-aGvg~i~lvD~D  126 (340)
                      +.-+|.|||+|.+|...+..|. . .|+.-+.++|.|
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~   58 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV   58 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSS
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCC
Confidence            4458999999999999999998 4 355444566643

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.35  E-value=0.23  Score=44.65  Aligned_cols=83  Identities=13%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+.                  ..+.+.+++.+++.+..+  ..+
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~--~~~   84 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSN------------------AEVADALKNELEEKGYKA--AVI   84 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTCCE--EEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHhcCCce--EEE
Confidence            467889999986 6799999999999997 466665421                  234555666666665444  444


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD~  193 (340)
                      ..+++.. ...+++       .+.|+||.+...
T Consensus        85 ~~D~~~~~~v~~~~~~~~~~~g~id~li~nAg~  117 (271)
T 4iin_A           85 KFDAASESDFIEAIQTIVQSDGGLSYLVNNAGV  117 (271)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             ECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            4455532 222222       378999987653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.34  E-value=0.16  Score=48.66  Aligned_cols=29  Identities=21%  Similarity=0.250  Sum_probs=25.9

Q ss_pred             cEEEEcCChhHHHHHHHHHH-cCCCcEEEEe
Q 019513           95 SILVIGAGGLGSPALLYLAA-CGVGRLGIVD  124 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~-aGvg~i~lvD  124 (340)
                      +|+|||+|.+|+.+|..|+. .|. .++++|
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            79999999999999999998 484 688887

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.34  E-value=0.23  Score=44.52  Aligned_cols=84  Identities=13%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|...                -...+.+.+.+.+....  .++..+
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~----------------~~~~~~~~~~~~~~~~~--~~~~~~   68 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQA----------------KDSDTANKLKDELEDQG--AKVALY   68 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCG----------------GGHHHHHHHHHHHHTTT--CEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCc----------------cCHHHHHHHHHHHHhcC--CcEEEE
Confidence            467889999986 6799999999999996 466655321                12235556666666554  455566


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ....++       ...|++|.+..
T Consensus        69 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  100 (262)
T 3ksu_A           69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINTVG  100 (262)
T ss_dssp             ECCCCSHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6666642 222222       46899998765

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.33  E-value=0.32  Score=42.40  Aligned_cols=79  Identities=19%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .++|+|.|+ ||+|.++++.|+..|.. +.++|.+.                   .+.+.+.+.+.+.. ..++..+..+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~~~~D   60 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGARSV-------------------DRLEKIAHELMQEQ-GVEVFYHHLD   60 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH-------------------HHHHHHHHHHHHHH-CCCEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCH-------------------HHHHHHHHHHHhhc-CCeEEEEEec
Confidence            467889985 67999999999999964 77766432                   34555555555222 2345555556


Q ss_pred             CCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          172 LRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       172 ~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      ++. +...+++       ...|++|.+..
T Consensus        61 ~~~~~~v~~~~~~~~~~~g~id~li~~Ag   89 (235)
T 3l77_A           61 VSKAESVEEFSKKVLERFGDVDVVVANAG   89 (235)
T ss_dssp             TTCHHHHHHHCC-HHHHHSSCSEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            654 2233333       37899998864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.33  E-value=0.3  Score=43.55  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   41 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGA-TVAIADID   41 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            477889999985 6799999999999996 57777643

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=93.32  E-value=0.28  Score=42.91  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh-hCCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS-INSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~-lnp~v~i~~~  168 (340)
                      |++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+ ...  ++..+
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~--~~~~~   62 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSG-------------------ERAKAVAEEIANKYGV--KAHGV   62 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHHCC--CEEEE
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCh-------------------HHHHHHHHHHHhhcCC--ceEEE
Confidence            66788999985 6799999999999995 577776431                   233444444444 232  34444


Q ss_pred             cccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++. +.....+       .+.|+||.+..
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag   94 (248)
T 2pnf_A           63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAG   94 (248)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHSSCCSEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            445543 2233333       37899998765

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=93.32  E-value=0.32  Score=49.76  Aligned_cols=104  Identities=14%  Similarity=0.136  Sum_probs=62.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ++.++|+|.|+ |.+|+.+++.|+.. |. ++.++|...-   ++.+ . .                   ..+  .+..+
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~-~V~~~~r~~~---~~~~-~-~-------------------~~~--~v~~v  365 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD---AISR-F-L-------------------NHP--HFHFV  365 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSE-EEEEEESCCT---TTGG-G-T-------------------TCT--TEEEE
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCC-EEEEEEcCch---hhhh-h-c-------------------cCC--ceEEE
Confidence            45678999995 67999999999998 64 6777775421   1100 0 0                   012  23444


Q ss_pred             cccCCcc-c-HHhhcccCcEEEEcCCChh-----------------hHHHHHHHHHHcCCcEEEEeecCcee
Q 019513          169 REALRTS-N-ALEILSQYEIVVDATDNAP-----------------SRYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       169 ~~~~~~~-~-~~~~l~~~DlVi~~tD~~~-----------------~r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      ..+++.. . ..+.++++|+||.+.....                 .-..+.++|.+.+..+|..++.+.+|
T Consensus       366 ~~Dl~d~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg  437 (660)
T 1z7e_A          366 EGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  437 (660)
T ss_dssp             ECCTTTCHHHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             ECCCCCcHHHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcC
Confidence            4455532 2 3456678999998754211                 11234567777777888877765544

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=93.32  E-value=0.3  Score=45.53  Aligned_cols=85  Identities=19%  Similarity=0.249  Sum_probs=53.4

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++++|+|.|+ ||+|..+++.|+..|.. +.+.+.+..              +....+.+.+++.+....+.  +..+.
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~--------------~r~~~~~~~l~~~~~~~~~~--~~~~~   65 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIV--------------GRNASNVEAIAGFARDNDVD--LRTLE   65 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTT--------------TTTHHHHHHHHHHHHHHTCC--EEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCccc--------------ccCHHHHHHHHHHHHhcCCc--EEEEE
Confidence            45678888885 67999999999999964 555544321              12234556666666666544  44455


Q ss_pred             ccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          170 EALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      .+++. +...+.+       ...|+||.+..
T Consensus        66 ~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           66 LDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            55554 2223333       37999998876

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=93.31  E-value=0.089  Score=43.98  Aligned_cols=32  Identities=31%  Similarity=0.617  Sum_probs=29.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      +|+|||+|..|.++|..|++.|. +++|+|...
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            69999999999999999999996 699999654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.28  E-value=0.11  Score=48.47  Aligned_cols=32  Identities=34%  Similarity=0.524  Sum_probs=28.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .+.+|+|+|+|++|..++..+...|. ++..+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~  195 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVD  195 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEe
Confidence            45789999999999999999999997 777766

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.27  E-value=0.37  Score=43.50  Aligned_cols=80  Identities=15%  Similarity=0.197  Sum_probs=51.3

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+++...  ++..+.
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~~   77 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGE-------------------EGLRTTLKELREAGV--EADGRT   77 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--ceEEEE
Confidence            66788999985 5699999999999996 577776431                   234445555655443  344455


Q ss_pred             ccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          170 EALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      .+++.. ....+       +...|+||.+..
T Consensus        78 ~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~Ag  108 (277)
T 2rhc_B           78 CDVRSVPEIEALVAAVVERYGPVDVLVNNAG  108 (277)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            555532 22222       236899998764

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=93.26  E-value=0.19  Score=44.72  Aligned_cols=83  Identities=14%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHH---cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAA---CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~---aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      .|++++|+|.|+ ||+|.++++.|+.   .|. ++.++|.+.                   .+.+.+.+.+.+.++..++
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~   62 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSE-------------------SMLRQLKEELGAQQPDLKV   62 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCH-------------------HHHHHHHHHHHHHCTTSEE
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeE
Confidence            367788888885 5799999999999   786 577776431                   3455666777777666677


Q ss_pred             EEecccCCccc-HHhhc----c-----cCc--EEEEcCC
Q 019513          166 IEHREALRTSN-ALEIL----S-----QYE--IVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~~-~~~~l----~-----~~D--lVi~~tD  192 (340)
                      ..+..+++... ...++    +     ..|  +||.+..
T Consensus        63 ~~~~~Dv~~~~~v~~~~~~~~~~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           63 VLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECCC
T ss_pred             EEEecCCCCHHHHHHHHHHHHhccccccCCccEEEECCc
Confidence            77777776532 22221    2     467  8887754

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=93.25  E-value=0.089  Score=50.52  Aligned_cols=36  Identities=36%  Similarity=0.531  Sum_probs=32.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      ...|+|||+|..|..+|..|++.|..+++|+|.+..
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            467999999999999999999999878999997765

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.23  E-value=0.34  Score=43.53  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=51.5

Q ss_pred             HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHH-HhhCCCceE
Q 019513           88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATC-RSINSTVHI  165 (340)
Q Consensus        88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L-~~lnp~v~i  165 (340)
                      +..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+++.+ .....  ++
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~   73 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNL-------------------EEASEAAQKLTEKYGV--ET   73 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHHCC--CE
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhcCC--eE
Confidence            44567788999985 5799999999999996 577776431                   2334444444 33333  34


Q ss_pred             EEecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          166 IEHREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+..+++.. ....+       +...|+||.+..
T Consensus        74 ~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnAg  108 (267)
T 1vl8_A           74 MAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAG  108 (267)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4455555532 22222       236899998764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.21  E-value=0.079  Score=48.76  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=28.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999996 68888854

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=93.20  E-value=0.43  Score=42.96  Aligned_cols=88  Identities=19%  Similarity=0.308  Sum_probs=55.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-....+            ..+.+.+.+.+.....  ++..+
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~   67 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKL------------PGTIHSAAAAVNAAGG--QGLAL   67 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTS------------CCCHHHHHHHHHHHTS--EEEEE
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhh------------HHHHHHHHHHHHhcCC--eEEEE
Confidence            367889999985 5699999999999996 688888654221111            1134455556666543  44455


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ....+       +...|++|.+..
T Consensus        68 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG   99 (274)
T 3e03_A           68 KCDIREEDQVRAAVAATVDTFGGIDILVNNAS   99 (274)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555542 22222       246898888765

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.19  E-value=0.2  Score=45.06  Aligned_cols=82  Identities=16%  Similarity=0.286  Sum_probs=53.4

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..+++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+++...  ++..
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~   84 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINK-------------------HGLEETAAKCKGLGA--KVHT   84 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCH-------------------HHHHHHHHHHHhcCC--eEEE
Confidence            3577899999985 5799999999999996 577776432                   234445555655543  3444


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +.+.|+||.+..
T Consensus        85 ~~~Dl~~~~~v~~~~~~~~~~~g~iD~li~~Ag  117 (272)
T 1yb1_A           85 FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAG  117 (272)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence            55555532 22222       236899998864

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=93.19  E-value=0.56  Score=43.99  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=61.1

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ..++|+|.|+ |.+|+.+++.|+..|. ++.+++.+.                   .+.  .++.+.. .+.+  +.+..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~~--~~~~l~~-~~~v--~~v~~   58 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSL-------------------KGL--IAEELQA-IPNV--TLFQG   58 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCS-------------------CSH--HHHHHHT-STTE--EEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC-------------------Chh--hHHHHhh-cCCc--EEEEC
Confidence            3578999996 7799999999999984 577665431                   011  1122322 1233  33444


Q ss_pred             c-CC-cccHHhhcccCcEEEEcCCCh------hhHHHHHHHHHHcC-C-cEEEEeec
Q 019513          171 A-LR-TSNALEILSQYEIVVDATDNA------PSRYMISDCCVVLG-K-PLVSGAAL  217 (340)
Q Consensus       171 ~-~~-~~~~~~~l~~~DlVi~~tD~~------~~r~~i~~~~~~~~-~-p~i~~~~~  217 (340)
                      + ++ .+...+.++++|+||.+....      .. ..+-++|.+.+ + .+|+.++.
T Consensus        59 D~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           59 PLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIG-KDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECCCSTTSCHHHHH-HHHHHHHHHHSCCSEEEEEECC
T ss_pred             CccCCHHHHHHHHhcCCEEEEcCCCCCcHHHHHH-HHHHHHHHHcCCccEEEEeCCc
Confidence            5 54 344566778899999766432      22 34566777777 4 57766554

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=93.18  E-value=0.38  Score=43.67  Aligned_cols=31  Identities=35%  Similarity=0.484  Sum_probs=24.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeC
Q 019513           95 SILVIGA-GGLGSPALLYLAAC-GVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~  125 (340)
                      +|+|.|+ |.+|+.+++.|+.. |-.++.++|.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r   33 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDI   33 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEES
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence            5899995 77999999999988 3246777764

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=93.17  E-value=0.23  Score=44.49  Aligned_cols=83  Identities=22%  Similarity=0.183  Sum_probs=50.5

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..+.+++|+|.|+ ||+|..+++.|+..|..-+.+.+.+                   ..+.+.+.+.+.+..+.+.  .
T Consensus        22 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~-------------------~~~~~~~~~~l~~~~~~~~--~   80 (267)
T 4iiu_A           22 SNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRD-------------------AAGAQETLNAIVANGGNGR--L   80 (267)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-------------------HHHHHHHHHHHHHTTCCEE--E
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc-------------------hHHHHHHHHHHHhcCCceE--E
Confidence            4567788999986 6799999999999997533333211                   2345556666666655544  3


Q ss_pred             ecccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          168 HREALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      +..+++. +...+++       ...|+||.+..
T Consensus        81 ~~~Dl~~~~~~~~~~~~~~~~~g~id~li~nAg  113 (267)
T 4iiu_A           81 LSFDVANREQCREVLEHEIAQHGAWYGVVSNAG  113 (267)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHHHhCCccEEEECCC
Confidence            4445553 2222222       37899998764

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=93.13  E-value=0.11  Score=49.60  Aligned_cols=37  Identities=27%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|..++..+|.
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~  196 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY  196 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECS
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            3689999999999999999999999999655777764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.13  E-value=0.27  Score=44.53  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      .-+++++|+|.|+ ||+|..+++.|+..|.. +.++|.+                   ..+.+.+.+.+++....  +..
T Consensus        20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~~--~~~   77 (279)
T 3sju_A           20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARD-------------------AKNVSAAVDGLRAAGHD--VDG   77 (279)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHTTTCC--EEE
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCCc--EEE
Confidence            3456788999985 67999999999999964 7776643                   23556666667665544  444


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +...|+||.+..
T Consensus        78 ~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg  110 (279)
T 3sju_A           78 SSCDVTSTDEVHAAVAAAVERFGPIGILVNSAG  110 (279)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence            55555542 22222       246899998764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=93.12  E-value=0.058  Score=50.44  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDI  173 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECC
Confidence            46889999999999999999999999995 5777664

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.11  E-value=0.48  Score=42.89  Aligned_cols=83  Identities=19%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ ||+|..+++.|+..|. ++.++|...                  ..+.+.+.+.+....+.  +..+
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~   84 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGD------------------AEGVAPVIAELSGLGAR--VIFL   84 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCC------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            467888999986 6799999999999996 577766311                  13455566666665544  4445


Q ss_pred             cccCCc-ccHHhhc-------ccCcEEEEcCCC
Q 019513          169 REALRT-SNALEIL-------SQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~-~~~~~~l-------~~~DlVi~~tD~  193 (340)
                      ..+++. +....++       ...|+||.+...
T Consensus        85 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           85 RADLADLSSHQATVDAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             ECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            555553 2223333       378999887654

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=93.11  E-value=0.35  Score=46.41  Aligned_cols=81  Identities=15%  Similarity=0.132  Sum_probs=55.2

Q ss_pred             CCcEEEEc-CChhHHHHHHHHHHcCC-Cc---EEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCc-eE
Q 019513           93 KSSILVIG-AGGLGSPALLYLAACGV-GR---LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STV-HI  165 (340)
Q Consensus        93 ~~~VlVvG-~GglGs~va~~La~aGv-g~---i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v-~i  165 (340)
                      ..||.|+| +|.+|..++..|+..++ ++   |.|+|.|.               +.-+.|++..+.-|.... |.. .+
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~---------------~~~~~~~~G~amDL~h~~~p~~~~v   96 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS---------------ERSFQALEGVAMELEDSLYPLLREV   96 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC---------------GGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCc---------------cchhhhhHHHHHhHHhhhhhhcCCc
Confidence            46899999 79999999999999887 55   88877543               233345666666666654 432 22


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      ...      .+..+.++++|+||.+...+
T Consensus        97 ~i~------~~~y~~~~daDvVVitag~p  119 (375)
T 7mdh_A           97 SIG------IDPYEVFEDVDWALLIGAKP  119 (375)
T ss_dssp             EEE------SCHHHHTTTCSEEEECCCCC
T ss_pred             EEe------cCCHHHhCCCCEEEEcCCCC
Confidence            221      23456689999999876643

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=93.11  E-value=0.3  Score=43.42  Aligned_cols=80  Identities=11%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      +++++|+|.|+ |++|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+......  +..+.
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~--~~~~~   69 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNE-------------------YELNECLSKWQKKGFQ--VTGSV   69 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCC--EEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCe--eEEEE
Confidence            66788999985 6799999999999996 577776432                   2344445555554433  44444


Q ss_pred             ccCCcc-cHHhhc--------ccCcEEEEcCC
Q 019513          170 EALRTS-NALEIL--------SQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~-~~~~~l--------~~~DlVi~~tD  192 (340)
                      .+++.. ....++        .+.|+||.+..
T Consensus        70 ~D~~~~~~~~~~~~~~~~~~~~~id~li~~Ag  101 (266)
T 1xq1_A           70 CDASLRPEREKLMQTVSSMFGGKLDILINNLG  101 (266)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence            455432 222222        56799988764

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=93.09  E-value=0.26  Score=44.75  Aligned_cols=84  Identities=14%  Similarity=0.183  Sum_probs=49.9

Q ss_pred             HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      ...|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..... +.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~-~~   86 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRP-------------------DVLDAAAGEIGGRTGNI-VR   86 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHHSSC-EE
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcCCCe-EE
Confidence            44678899999985 6799999999999996 577776432                   24455555555543322 34


Q ss_pred             EecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          167 EHREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       167 ~~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      .+..+++.. ...++       +...|+||.+..
T Consensus        87 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG  120 (281)
T 4dry_A           87 AVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAG  120 (281)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            445555542 22222       246799888764

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.08  E-value=0.49  Score=42.69  Aligned_cols=97  Identities=19%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-....+....+..   -...+.+.+++.+...+.  ++..+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~   81 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPA---STPEDLAETADLVKGHNR--RIVTA   81 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCC---CCHHHHHHHHHHHHTTTC--CEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecccccccccccccccc---CCHHHHHHHHHHHhhcCC--ceEEE
Confidence            477889999986 5799999999999996 4788876532111111111110   012344555555655544  45555


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ....+       +...|++|.+..
T Consensus        82 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           82 EVDVRDYDALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            5566542 22222       247899998865

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.08  E-value=0.19  Score=47.94  Aligned_cols=34  Identities=26%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~  218 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL  218 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcC
Confidence            4578999999999999999888899988888764

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.07  E-value=0.24  Score=44.66  Aligned_cols=80  Identities=16%  Similarity=0.346  Sum_probs=53.1

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+++.+.....  ++..+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~~~~   59 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGA-KILLGARR-------------------QARIEAIATEIRDAGG--TALAQV   59 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            45678888886 5799999999999996 47777643                   2355666667766543  444555


Q ss_pred             ccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          170 EALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      .+++.. ....+       +...|+||.+..
T Consensus        60 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG   90 (264)
T 3tfo_A           60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNAG   90 (264)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            555542 22222       347899998764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=93.06  E-value=0.29  Score=44.35  Aligned_cols=81  Identities=16%  Similarity=0.236  Sum_probs=51.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~  167 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+. ..  ++..
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~~~   80 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKM-------------------DVLKATAEQISSQTGN--KVHA   80 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHHSS--CEEE
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhcCC--ceEE
Confidence            467889999986 6799999999999996 577776431                   2344445555544 33  3444


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. .....       +...|+||.+..
T Consensus        81 ~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag  113 (302)
T 1w6u_A           81 IQCDVRDPDMVQNTVSELIKVAGHPNIVINNAA  113 (302)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            55555532 22222       235699998765

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=93.05  E-value=0.24  Score=44.68  Aligned_cols=32  Identities=31%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+|.|+ |.+|+.+++.|...|..++.+++..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   33 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            5899998 7799999999999996678887753

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=93.04  E-value=0.13  Score=45.74  Aligned_cols=36  Identities=33%  Similarity=0.465  Sum_probs=29.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   40 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLD   40 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467789999985 6799999999999995 68887754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.04  E-value=0.16  Score=48.62  Aligned_cols=34  Identities=24%  Similarity=0.223  Sum_probs=29.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  218 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQ  218 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4578999999999999999888899888888874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.03  E-value=0.3  Score=44.22  Aligned_cols=82  Identities=13%  Similarity=0.274  Sum_probs=58.0

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|+++.++|-|+ +|+|..+|+.|+..|. ++.++|.+                   ..+.+.+++.+++....  +..
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~-------------------~~~~~~~~~~i~~~g~~--~~~   60 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELL-------------------EDRLNQIVQELRGMGKE--VLG   60 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCC--EEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCc--EEE
Confidence            4689999999986 5799999999999996 57777643                   24677777888776544  455


Q ss_pred             ecccCCccc--------HHhhcccCcEEEEcCC
Q 019513          168 HREALRTSN--------ALEILSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~~--------~~~~l~~~DlVi~~tD  192 (340)
                      +..+++...        ..+.+...|++|....
T Consensus        61 ~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           61 VKADVSKKKDVEEFVRRTFETYSRIDVLCNNAG   93 (254)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            555665422        2233467899998754

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=93.03  E-value=0.31  Score=43.67  Aligned_cols=84  Identities=12%  Similarity=0.200  Sum_probs=49.4

Q ss_pred             HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceE
Q 019513           88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHI  165 (340)
Q Consensus        88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i  165 (340)
                      +..+++++|+|.|+ ||+|..+++.|+..|. ++.++|..                  ...+.+.+.+.+.+. ..  ++
T Consensus         6 ~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~------------------~~~~~~~~~~~~~~~~~~--~~   64 (276)
T 1mxh_A            6 HEASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRH------------------SEGAAQRLVAELNAARAG--SA   64 (276)
T ss_dssp             -----CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHHHSTT--CE
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC------------------ChHHHHHHHHHHHHhcCC--ce
Confidence            34567788888885 5799999999999995 57777641                  112444555556554 33  34


Q ss_pred             EEecccCCcc-----cHHhhc-------ccCcEEEEcCC
Q 019513          166 IEHREALRTS-----NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~-----~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+..+++..     ....++       ...|+||.+..
T Consensus        65 ~~~~~Dl~~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg  103 (276)
T 1mxh_A           65 VLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNAS  103 (276)
T ss_dssp             EEEECCCSSSTTHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEeccCCCccccHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            4444455433     222222       36899888764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.01  E-value=0.19  Score=47.01  Aligned_cols=34  Identities=38%  Similarity=0.515  Sum_probs=28.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~  204 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL  204 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4578999999999999888887887678888764

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=92.99  E-value=0.36  Score=42.96  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=29.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   45 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLD   45 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            367889999985 5699999999999996 67777644

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=92.99  E-value=0.063  Score=50.02  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=32.0

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       120 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~  156 (303)
T 1qp8_A          120 PLIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRT  156 (303)
T ss_dssp             CCCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            36899999999999999999999999996 57777643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.98  E-value=0.1  Score=48.76  Aligned_cols=36  Identities=31%  Similarity=0.533  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+.+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4679999999999999999999996 69999976553

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.97  E-value=0.36  Score=43.54  Aligned_cols=83  Identities=14%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             HcccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|++ |+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.. ..++..
T Consensus        23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~   81 (277)
T 4fc7_A           23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSL-------------------PRVLTAARKLAGAT-GRRCLP   81 (277)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-SSCEEE
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhc-CCcEEE
Confidence            35788999999864 799999999999997 677776431                   23444444454322 234555


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +...|+||.+..
T Consensus        82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           82 LSMDVRAPPAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            55556542 22222       247899998765

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.97  E-value=0.44  Score=42.98  Aligned_cols=82  Identities=15%  Similarity=0.267  Sum_probs=53.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|.. +.++|...                  ..+.+.+.+.+++..+.  +..+
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~------------------~~~~~~~~~~l~~~~~~--~~~~   86 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNA------------------AERAQAVVSEIEQAGGR--AVAI   86 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            478899999986 57999999999999964 66654321                  13455666667665544  4445


Q ss_pred             cccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++. +...+++       ...|++|.+..
T Consensus        87 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  118 (271)
T 3v2g_A           87 RADNRDAEAIEQAIRETVEALGGLDILVNSAG  118 (271)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence            555553 2222222       37899998764

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=92.95  E-value=0.37  Score=45.50  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=26.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D  126 (340)
                      +.-+|.|||+|.+|...+..|... |+.-+.++|.+
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~   39 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDIL   39 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSS
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence            446899999999999999998876 44434455643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.95  E-value=0.31  Score=45.91  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=28.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|. ++..+|.
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~  221 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSS  221 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEec
Confidence            35789999999999999999999998 6777663

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.94  E-value=0.22  Score=44.87  Aligned_cols=95  Identities=15%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-..    +....   .-...+.+.+...+.....  ++..
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~   75 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIE----TNEYP---LATSRDLEEAGLEVEKTGR--KAYT   75 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCT----TSCSC---CCCHHHHHHHHHHHHHTTS--CEEE
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccccccc----ccccc---hhhhHHHHHHHHHHHhcCC--ceEE
Confidence            4578899999986 5799999999999996 588887542111    10000   0112344555556666544  4445


Q ss_pred             ecccCCcc-cHHhhc-------ccCcEEEEcCCC
Q 019513          168 HREALRTS-NALEIL-------SQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~-~~~~~l-------~~~DlVi~~tD~  193 (340)
                      +..+++.. ...+++       ...|+||.+...
T Consensus        76 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~  109 (287)
T 3pxx_A           76 AEVDVRDRAAVSRELANAVAEFGKLDVVVANAGI  109 (287)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            55555542 222222       378999987653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=92.93  E-value=0.096  Score=49.84  Aligned_cols=38  Identities=24%  Similarity=0.185  Sum_probs=30.8

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ...+..+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            33455689999999999999999999998 599999764

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=92.91  E-value=0.36  Score=45.83  Aligned_cols=85  Identities=14%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS  161 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGv-g-----~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp  161 (340)
                      ..++.-||.|+|+ |++|..++..|+...+ +     .|.|+|-.                 -++.+++-.+-.|.....
T Consensus        20 ~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~-----------------~~~~~~~Gva~DL~~~~~   82 (345)
T 4h7p_A           20 GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIE-----------------PALKALAGVEAELEDCAF   82 (345)
T ss_dssp             --CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG-----------------GGHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCC-----------------CccccchhhhhhhhhcCc
Confidence            3455669999997 9999999999987664 3     68887721                 123445555555666543


Q ss_pred             CceEEEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          162 TVHIIEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       162 ~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      ......+.    ..+..+.++++|+||.+..-+
T Consensus        83 ~~~~~~~~----~~~~~~a~~~advVvi~aG~p  111 (345)
T 4h7p_A           83 PLLDKVVV----TADPRVAFDGVAIAIMCGAFP  111 (345)
T ss_dssp             TTEEEEEE----ESCHHHHTTTCSEEEECCCCC
T ss_pred             cCCCcEEE----cCChHHHhCCCCEEEECCCCC
Confidence            33222221    123456689999999887653

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.90  E-value=0.51  Score=46.73  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=27.5

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+|+|.|+ |.+|+.+++.|...|. ++++++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            468999995 7799999999999996 67777654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=92.89  E-value=0.14  Score=48.38  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~  223 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI  223 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3578999999999999999998999888888763

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.87  E-value=0.16  Score=48.03  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  225 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL  225 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3578999999999999999998999888888763

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=92.87  E-value=0.23  Score=48.42  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=34.0

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus       215 ~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~  251 (419)
T 3aoe_E          215 DLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSM  251 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            5789999999999999999999999998888898875

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=92.87  E-value=0.46  Score=43.03  Aligned_cols=84  Identities=11%  Similarity=0.336  Sum_probs=52.2

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|...                  ..+.+.+.+.+.+.. ...+..
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~-~~~~~~   80 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGA------------------PDEIRTVTDEVAGLS-SGTVLH   80 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCC------------------HHHHHHHHHHHHTTC-SSCEEE
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------hHHHHHHHHHHhhcc-CCcEEE
Confidence            3567889999985 6799999999999996 577766421                  123444455554442 234555


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +...|+||.+..
T Consensus        81 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  113 (281)
T 3v2h_A           81 HPADMTKPSEIADMMAMVADRFGGADILVNNAG  113 (281)
T ss_dssp             ECCCTTCHHHHHHHHHHHHHHTSSCSEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            55555542 22222       236788887754

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=92.84  E-value=0.49  Score=42.53  Aligned_cols=80  Identities=18%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+...  .+..+.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~~   76 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNE-------------------KELDECLEIWREKGL--NVEGSV   76 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--ceEEEE
Confidence            67788999985 6799999999999996 577776432                   234444555555443  344444


Q ss_pred             ccCCcc-cHHhh-------c-ccCcEEEEcCC
Q 019513          170 EALRTS-NALEI-------L-SQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~-~~~~~-------l-~~~DlVi~~tD  192 (340)
                      .+++.. ....+       + ...|+||.+..
T Consensus        77 ~D~~~~~~~~~~~~~~~~~~~g~id~lv~nAg  108 (273)
T 1ae1_A           77 CDLLSRTERDKLMQTVAHVFDGKLNILVNNAG  108 (273)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence            455432 22222       2 56788888764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.80  E-value=0.31  Score=44.31  Aligned_cols=82  Identities=23%  Similarity=0.313  Sum_probs=51.1

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..++++.|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+++.+....  .++..
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~--~~~~~   81 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGV-TVGALGRTR-------------------TEVEEVADEIVGAG--GQAIA   81 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHTTTT--CCEEE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CcEEE
Confidence            3467888999985 5799999999999997 677776431                   23445555554433  34445


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +...|++|.+..
T Consensus        82 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           82 LEADVSDELQMRNAVRDLVLKFGHLDIVVANAG  114 (283)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            55555542 22222       246888888765

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=92.80  E-value=0.35  Score=43.35  Aligned_cols=82  Identities=22%  Similarity=0.324  Sum_probs=53.5

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh-hCCCceEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS-INSTVHII  166 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~-lnp~v~i~  166 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+ ...  ++.
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~~   73 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDV-------------------SELDAARRALGEQFGT--DVH   73 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHHCC--CEE
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhcCC--cEE
Confidence            3577889999985 6799999999999996 477776432                   345555555655 333  445


Q ss_pred             EecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          167 EHREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       167 ~~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      .+..+++.. ....+       +...|++|.+..
T Consensus        74 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  107 (266)
T 4egf_A           74 TVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAG  107 (266)
T ss_dssp             EEECCTTSTTHHHHHHHHHHHHHTSCSEEEEECC
T ss_pred             EEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            555555542 22222       247899888764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=92.78  E-value=0.3  Score=45.76  Aligned_cols=80  Identities=10%  Similarity=0.086  Sum_probs=49.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceE
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVG------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHI  165 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i  165 (340)
                      .||+|+|+ |.+|+.++..|+..|.-      +|.++|.+.               +--..|++..+..|... .+.. .
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~---------------~~~~~~~~g~~~dl~~~~~~~~-~   69 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPN---------------EKAQKALQGVMMEIDDCAFPLL-A   69 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSC---------------HHHHHHHHHHHHHHHTTTCTTE-E
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCC---------------ccccccchhhHHHHhhhccccc-C
Confidence            58999998 99999999999998863      788887430               00012333333344442 2221 1


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCCC
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      ..   .. ..+..+.++++|+||.+...
T Consensus        70 ~i---~~-~~~~~~al~~aD~Vi~~ag~   93 (329)
T 1b8p_A           70 GM---TA-HADPMTAFKDADVALLVGAR   93 (329)
T ss_dssp             EE---EE-ESSHHHHTTTCSEEEECCCC
T ss_pred             cE---EE-ecCcHHHhCCCCEEEEeCCC
Confidence            11   11 13445668899999988653

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=92.74  E-value=0.62  Score=43.79  Aligned_cols=124  Identities=18%  Similarity=0.128  Sum_probs=64.1

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCccccc--CCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELN--NMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~s--NL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      -+..+|+|.|+ |.+|+.+++.|+..|. ++.++|...-...  ++....+..   +-. -.+.+.+......+.++  .
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~---~~~-l~~~~~~~~~~~~~~v~--~   81 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDNLVRRLFDHQLGLESLTP---IAS-IHDRISRWKALTGKSIE--L   81 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCHHHHHHHHHTCCCSSC---CCC-HHHHHHHHHHHHCCCCE--E
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCC-eEEEEEecCccccccccccccccc---cch-hhhhhhhHhhccCCceE--E
Confidence            35678999986 5599999999999995 6888775321100  000000000   000 01111111112233444  3


Q ss_pred             ecccCCc-ccHHhhccc--CcEEEEcCCChhh--------------------HHHHHHHHHHcCC--cEEEEeecCcee
Q 019513          168 HREALRT-SNALEILSQ--YEIVVDATDNAPS--------------------RYMISDCCVVLGK--PLVSGAALGLEG  221 (340)
Q Consensus       168 ~~~~~~~-~~~~~~l~~--~DlVi~~tD~~~~--------------------r~~i~~~~~~~~~--p~i~~~~~g~~G  221 (340)
                      +..+++. +...+.+++  +|+||.+......                    -..+-++|.+.+.  .+|+.++.+.+|
T Consensus        82 ~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg  160 (404)
T 1i24_A           82 YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYG  160 (404)
T ss_dssp             EESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGC
T ss_pred             EECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhC
Confidence            4445553 334556666  9999988743110                    1124466777663  688877765554

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=92.73  E-value=0.46  Score=44.16  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=26.3

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++|+|.|+ |++|+.+++.|+..|. ++.++|.+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   34 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRR   34 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC-
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            57999995 7899999999999994 67777643

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=92.72  E-value=0.65  Score=43.80  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=52.6

Q ss_pred             cCCcEEEEcCChhHH-HHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGS-PALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs-~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.-+|.|||+|..|. ..+..|...|+.-+.++|.+.                   .|++.+++.    .+.+.+     
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~-------------------~~a~~~a~~----~~~~~~-----   76 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDD-------------------ALAAEFSAV----YADARR-----   76 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCH-------------------HHHHHHHHH----SSSCCE-----
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCH-------------------HHHHHHHHH----cCCCcc-----
Confidence            456899999999885 467777777876666776432                   233333322    221111     


Q ss_pred             cCCcccHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          171 ALRTSNALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       171 ~~~~~~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                         ..+..++++  +.|+|+.||.+ .....+...|.+.|++++.
T Consensus        77 ---~~~~~~ll~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl~  117 (361)
T 3u3x_A           77 ---IATAEEILEDENIGLIVSAAVS-SERAELAIRAMQHGKDVLV  117 (361)
T ss_dssp             ---ESCHHHHHTCTTCCEEEECCCH-HHHHHHHHHHHHTTCEEEE
T ss_pred             ---cCCHHHHhcCCCCCEEEEeCCh-HHHHHHHHHHHHCCCeEEE
Confidence               123455554  37888887764 3444555556666666554

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.72  E-value=0.37  Score=43.00  Aligned_cols=36  Identities=22%  Similarity=0.384  Sum_probs=30.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            577889999986 5799999999999997 67887743

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=92.70  E-value=0.082  Score=49.88  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI  177 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            46889999999999999999999999996 4676664

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=92.70  E-value=0.45  Score=46.60  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=33.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus       232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~  268 (440)
T 3aog_A          232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHT  268 (440)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4789999999999999999999999998877788865

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.70  E-value=0.19  Score=43.86  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=29.1

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      |++++|+|.|+ |++|.++++.|+..|. .++.++|.+
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~   38 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC
Confidence            35678899985 6799999999999995 578888754

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=92.67  E-value=0.28  Score=46.29  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=26.7

Q ss_pred             cCCcEEEEcCChhHHH-HHHHHHHc-CCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSP-ALLYLAAC-GVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~-va~~La~a-Gvg~i~lvD~D~  127 (340)
                      +.-+|.|||+|.+|.. .+..|... |+.-+.++|.+.
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~   41 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDL   41 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            3458999999999985 78888775 544445777654

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=92.66  E-value=0.34  Score=43.79  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=29.9

Q ss_pred             cccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|+   ||+|..+++.|+..|. ++.++|.+
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~   56 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYAT   56 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            377889999998   5899999999999995 57777643

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=92.65  E-value=0.33  Score=43.38  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=29.4

Q ss_pred             ccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |++++|+|.|+   ||+|..+++.|+..|. ++.++|.+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~   44 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQN   44 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCc
Confidence            67788999997   5899999999999995 57777643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=92.65  E-value=0.19  Score=49.92  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=31.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVV  128 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~V  128 (340)
                      .-.+|.|||+|.+|..+|..|+.. |...++++|.|.-
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            446899999999999999999999 8647999997643

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=92.62  E-value=0.74  Score=41.76  Aligned_cols=36  Identities=17%  Similarity=0.065  Sum_probs=26.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +-+.++|+|.|+ |++|+.+++.|+..|. ++.++|.+
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~   45 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRN   45 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecC
Confidence            446678999986 6699999999999995 67777754

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=92.62  E-value=0.24  Score=46.21  Aligned_cols=91  Identities=20%  Similarity=0.031  Sum_probs=51.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      -||.|||+|+.|...+..| ..++.-+.++|.+.-                  .+++.+++..++......  .+     
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~------------------~~~~~~~~~~~~~~~~~~--~~-----   56 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPE------------------EDLSKLEKAISEMNIKPK--KY-----   56 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTT------------------CCCHHHHHHHHTTTCCCE--EC-----
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCch------------------hhHHHHHHHHHHcCCCCc--cc-----
Confidence            4799999999988777777 555544555554320                  234455555554432222  11     


Q ss_pred             cccHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          174 TSNALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       174 ~~~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                       .+..++++  +.|+|+.||.+ .....+...|.+.|++++
T Consensus        57 -~~~~~ll~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl   95 (337)
T 3ip3_A           57 -NNWWEMLEKEKPDILVINTVF-SLNGKILLEALERKIHAF   95 (337)
T ss_dssp             -SSHHHHHHHHCCSEEEECSSH-HHHHHHHHHHHHTTCEEE
T ss_pred             -CCHHHHhcCCCCCEEEEeCCc-chHHHHHHHHHHCCCcEE
Confidence             23344443  47888877754 344445555555565544

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=92.59  E-value=0.32  Score=43.14  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |++++|+|.|+ ||+|..+++.|+..|. ++.++|.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r   36 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGF   36 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999986 6799999999999996 5666653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=92.59  E-value=0.14  Score=45.11  Aligned_cols=34  Identities=32%  Similarity=0.626  Sum_probs=30.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +...|+|||+|..|.++|..|++.|. +++|+|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            35689999999999999999999997 58899875

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=92.57  E-value=0.41  Score=42.43  Aligned_cols=38  Identities=24%  Similarity=0.174  Sum_probs=29.2

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCC--CcEEEEeCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGV--GRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGv--g~i~lvD~D  126 (340)
                      ..+++++|+|.|+ |++|..+++.|+..|.  .++.++|.+
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~   57 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN   57 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC
Confidence            4467788999985 6799999999999995  578888754

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=92.57  E-value=0.29  Score=42.92  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=29.3

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~   39 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467888999985 6799999999999996 47777643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=92.55  E-value=0.11  Score=49.39  Aligned_cols=35  Identities=17%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~  127 (340)
                      .+||+|||+|..|..+|.+|.+.|-+ +|+|||...
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            68999999999999999999999875 799998654

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=92.53  E-value=0.4  Score=42.42  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=29.5

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   45 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   45 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889999985 5699999999999996 57777643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=92.53  E-value=0.36  Score=44.20  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+......  +..+
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~--~~~~   85 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVD-------------------QPALEQAVNGLRGQGFD--AHGV   85 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCc--eEEE
Confidence            367889999996 5799999999999996 57776643                   23555666667665443  4445


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ...+++       ...|+||.+..
T Consensus        86 ~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            5555542 222222       37899998865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.52  E-value=0.39  Score=47.03  Aligned_cols=62  Identities=24%  Similarity=0.192  Sum_probs=41.4

Q ss_pred             CCCCHHHHhhhhhhccC-CCCCHH-HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           64 YGLSPDMIYRYSRHLLL-PSFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        64 ~~l~~~e~~ry~Rq~~l-~~~G~~-~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++-..++||-....+ ..|-.. ....-...+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus        91 ~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~  154 (456)
T 2vdc_G           91 GAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRY  154 (456)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            46777777777532111 011100 0011245789999999999999999999997 59999865

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=92.51  E-value=0.11  Score=49.09  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~  196 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDP  196 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECC
Confidence            46899999999999999999999998885 5666663

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=92.50  E-value=0.35  Score=42.29  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVG------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      +++|+|.|+ |++|.++++.|+..|..      ++.++|.+.                   .+.+.+.+.+...  ..++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~-------------------~~~~~~~~~~~~~--~~~~   60 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA-------------------ADLEKISLECRAE--GALT   60 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH-------------------HHHHHHHHHHHTT--TCEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH-------------------HHHHHHHHHHHcc--CCee
Confidence            457899985 67999999999999975      677776431                   2334444445433  2345


Q ss_pred             EEecccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          166 IEHREALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+..+++.. ....++       .+.|+||.+..
T Consensus        61 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag   95 (244)
T 2bd0_A           61 DTITADISDMADVRRLTTHIVERYGHIDCLVNNAG   95 (244)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             eEEEecCCCHHHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            5555565542 222222       36899998764

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=92.50  E-value=0.45  Score=44.47  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=27.0

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++|+|.|+ |++|+.+++.|+..|. ++.++|.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            57999995 7799999999999994 67777754

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=92.49  E-value=0.41  Score=42.40  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=29.9

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~   42 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRD   42 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence            567889999986 5799999999999996 48887743

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.48  E-value=0.17  Score=47.69  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=27.3

Q ss_pred             CcEEEEcCChhHHHH-HHHH-HHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPA-LLYL-AACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~v-a~~L-a~aGvg~i~lvD~  125 (340)
                      .+|+|+|+|++|..+ +..+ ...|..++..+|.
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~  207 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGR  207 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence            799999999999999 7777 6789877888774

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=92.45  E-value=0.11  Score=51.49  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=32.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|.+++|+|+|+|++|..+|+.|+..|. ++.++|.+
T Consensus       262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          262 MIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4789999999999999999999999998 78887754

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=92.43  E-value=0.37  Score=44.85  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=26.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D  126 (340)
                      .-||.|+|+|.+|..+++.|... ++.-+.++|.+
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~   37 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            34799999999999999999876 44445677754

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=92.41  E-value=0.28  Score=44.48  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=29.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   61 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADI   61 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            578889999985 5799999999999996 6777764

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=92.40  E-value=0.1  Score=48.61  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDP  173 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            46899999999999999999999999995 5777664

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.40  E-value=0.43  Score=40.57  Aligned_cols=35  Identities=14%  Similarity=0.133  Sum_probs=28.3

Q ss_pred             cCCcEEEEc-CChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           92 LKSSILVIG-AGGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG-~GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      ..++|+|.| .|++|..+++.|+..|. .++.+++.+
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~   40 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   40 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            356899999 57799999999999996 377777643

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=92.39  E-value=0.35  Score=42.39  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~   35 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLS   35 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467899985 6799999999999995 67777643

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=92.38  E-value=0.081  Score=50.42  Aligned_cols=92  Identities=14%  Similarity=0.161  Sum_probs=58.8

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|...                    +.+    ...+.  .++.   
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~--------------------~~~----~~~~~--g~~~---  205 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN--------------------SKE----RARAD--GFAV---  205 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH--------------------HHH----HHHHT--TCEE---
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC--------------------CHH----HHHhc--CceE---
Confidence            56899999999999999999999999996 466665311                    111    11111  1211   


Q ss_pred             cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHH---HcCCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCV---VLGKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~---~~~~p~i~~~  215 (340)
                           .++..++++.+|+|+.+.- +..++.+++....   +.+.-+|+.+
T Consensus       206 -----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          206 -----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             -----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             -----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence                 1245677888999988774 4456666654332   2345567755

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=92.38  E-value=0.11  Score=48.45  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=27.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      --|+|||+|..|+.+|..|++.|+. ++|+|.
T Consensus         5 yDViIVGaGpaGl~~A~~La~~G~~-V~v~Er   35 (397)
T 3oz2_A            5 YDVLVVGGGPGGSTAARYAAKYGLK-TLMIEK   35 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCc-EEEEeC
Confidence            3599999999999999999999985 888885

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.37  E-value=0.1  Score=48.53  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..+|+|||+|..|..+|..|++.|..+++|+|.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            45799999999999999999999975799999774

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=92.37  E-value=0.46  Score=42.38  Aligned_cols=82  Identities=13%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|.. +.+++..                  ...+.+.+.+.+.+..+.+.  .+
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~------------------~~~~~~~~~~~~~~~~~~~~--~~   63 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTYNG------------------AAEGAATAVAEIEKLGRSAL--AI   63 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECS------------------SCHHHHHHHHHHHTTTSCCE--EE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC------------------CHHHHHHHHHHHHhcCCceE--EE
Confidence            578899999986 57999999999999974 5555321                  11244555566666555443  34


Q ss_pred             cccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++. +....++       ...|++|.+..
T Consensus        64 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg   95 (259)
T 3edm_A           64 KADLTNAAEVEAAISAAADKFGEIHGLVHVAG   95 (259)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            444543 2222222       36788887764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=92.36  E-value=0.085  Score=49.62  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=32.4

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|..
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~  187 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGR  187 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            46889999999999999999999999997 58888743

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=92.36  E-value=0.21  Score=44.49  Aligned_cols=36  Identities=28%  Similarity=0.441  Sum_probs=29.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   38 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889999986 6799999999999996 57777643

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=92.35  E-value=0.59  Score=42.64  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=29.8

Q ss_pred             cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++|+|.|++   |+|..+++.|+..|.. +.++|.
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r   64 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYL   64 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeC
Confidence            3678899999986   8999999999999964 777764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.35  E-value=0.23  Score=51.74  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~  344 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNY-PVILKEVN  344 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCC-EEEEEECC
Confidence            579999999999999999999997 58888854

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.33  E-value=0.14  Score=48.05  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      ...|+|||+|..|+.+|..|++.|. +++|+|.+.+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~-~V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGE-EVTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            4689999999999999999999997 49999987543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=92.32  E-value=0.13  Score=49.00  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ..+|+|||+|..|..+|..|++.|+.+++|+|...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            46899999999999999999999986699999654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=92.31  E-value=0.11  Score=48.99  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|.
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~  177 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSR  177 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECS
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            46899999999999999999999999996 5777774

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=92.31  E-value=0.82  Score=42.92  Aligned_cols=32  Identities=13%  Similarity=0.152  Sum_probs=24.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~  125 (340)
                      -+|.|||+|.+|...+..|... ++.-+.++|.
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~   39 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASR   39 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECS
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcC
Confidence            4799999999999999998875 4433455553

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=92.31  E-value=0.49  Score=43.93  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=26.2

Q ss_pred             cCCcEEEEcCChhHH-HHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGS-PALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs-~va~~La~aGvg~i~lvD~D  126 (340)
                      +.-+|.|||+|..|. ..+..|...|+.-+.++|.+
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~   38 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESD   38 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCC
Confidence            345899999999986 57777877777656787754

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=92.31  E-value=0.3  Score=44.19  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=26.8

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHc--CCCcEEEEeCC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAAC--GVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~a--Gvg~i~lvD~D  126 (340)
                      +++|+|.|+ |.+|+.+++.|...  | .+++++|.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~   37 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIR   37 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            368999998 77999999999998  5 467777643

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.29  E-value=0.29  Score=43.62  Aligned_cols=81  Identities=17%  Similarity=0.277  Sum_probs=54.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+.  +..+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~~--~~~~   66 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLK-------------------SEGAEAVAAAIRQAGGK--AIGL   66 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESS-------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            477889999985 67999999999999965 7777643                   23456666677666544  4444


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ...++       +...|++|.+..
T Consensus        67 ~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg   98 (256)
T 3gaf_A           67 ECNVTDEQHREAVIKAALDQFGKITVLVNNAG   98 (256)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555542 22222       247899998764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.29  E-value=0.09  Score=49.21  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+|+|+|+|++|..++..+...|.+++..+|..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~  198 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPN  198 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            67899999999999999999999998788887743

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.28  E-value=0.36  Score=43.38  Aligned_cols=82  Identities=16%  Similarity=0.320  Sum_probs=52.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|...                  ..+.+.+.+.+++....  +..+
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~   73 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANS------------------TKDAEKVVSEIKALGSD--AIAI   73 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCC------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            577889999986 5799999999999996 455554321                  12455566666665544  3444


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      ..+++.. ...++       +...|++|.+..
T Consensus        74 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  105 (270)
T 3is3_A           74 KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSG  105 (270)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555532 22222       246799887755

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.27  E-value=0.48  Score=43.14  Aligned_cols=83  Identities=17%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.-                  ...+.+.+.+.+...  ++..
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~~~~--~~~~  101 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEE------------------GDANETKQYVEKEGV--KCVL  101 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCH------------------HHHHHHHHHHHTTTC--CEEE
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcCC--cEEE
Confidence            4688999999986 6799999999999996 5777764321                  123344444554443  4445


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ...++       +...|++|.+..
T Consensus       102 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  134 (291)
T 3ijr_A          102 LPGDLSDEQHCKDIVQETVRQLGSLNILVNNVA  134 (291)
T ss_dssp             EESCTTSHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            55555542 22222       246899888743

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.27  E-value=0.31  Score=42.86  Aligned_cols=80  Identities=16%  Similarity=0.150  Sum_probs=52.4

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+++.++.  +..+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~~~~~~~~--~~~~~   60 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATS-------------------QASAEKFENSMKEKGFK--ARGLV   60 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHTTCC--EEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCCc--eEEEE
Confidence            56788999986 6799999999999996 47776643                   23455666666666544  44444


Q ss_pred             ccCCc-ccHHhhc-------ccCcEEEEcCC
Q 019513          170 EALRT-SNALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~-~~~~~~l-------~~~DlVi~~tD  192 (340)
                      .+++. +...+++       ...|+||.+..
T Consensus        61 ~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag   91 (247)
T 3lyl_A           61 LNISDIESIQNFFAEIKAENLAIDILVNNAG   91 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTCCCSEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            45543 2222222       35799988865

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.27  E-value=0.38  Score=43.40  Aligned_cols=83  Identities=11%  Similarity=0.277  Sum_probs=51.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC-CceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS-TVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp-~v~i~~  167 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+..... ...+..
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   62 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSS-------------------ERLEETRQIILKSGVSEKQVNS   62 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTTCCGGGEEE
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHcCCCCcceEE
Confidence            367788888885 6799999999999996 577776432                   233444455544322 114555


Q ss_pred             ecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513          168 HREALRTS-NALEI-------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~-~~~~~-------l~~~DlVi~~tD  192 (340)
                      +..+++.. ....+       +...|+||.+..
T Consensus        63 ~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg   95 (280)
T 1xkq_A           63 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAG   95 (280)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            55555542 22222       236899888764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=92.24  E-value=0.38  Score=43.08  Aligned_cols=39  Identities=13%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ...+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~   62 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSI   62 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            44678889999986 6799999999999996 688888654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=92.24  E-value=0.43  Score=42.63  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=29.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            367788999985 5799999999999996 57777643

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=92.24  E-value=0.3  Score=43.16  Aligned_cols=82  Identities=10%  Similarity=0.302  Sum_probs=52.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ |++|..+++.|+..|. ++.++|..                  ...+.+.+.+.+....+  ++..+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~------------------~~~~~~~~~~~l~~~~~--~~~~~   62 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRS------------------KEDEANSVLEEIKKVGG--EAIAV   62 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHHTTC--EEEEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCC------------------ChHHHHHHHHHHHhcCC--ceEEE
Confidence            477888999985 6799999999999996 47776641                  01234455555655443  44455


Q ss_pred             cccCCcc-cHHhhc-------ccCcEEEEcCC
Q 019513          169 REALRTS-NALEIL-------SQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~~l-------~~~DlVi~~tD  192 (340)
                      ..+++.. ...+++       .+.|+||.+..
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag   94 (261)
T 1gee_A           63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555532 222333       37899998754

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=92.24  E-value=0.12  Score=48.24  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      ...|+|||+|..|..+|..|++.|. +++|+|.+.+.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            3579999999999999999999997 69999976543

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=92.23  E-value=0.43  Score=43.05  Aligned_cols=39  Identities=15%  Similarity=0.103  Sum_probs=30.7

Q ss_pred             HHHcccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           87 GQSNLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+..+++++|+|.|+   +|+|.++++.|+..|. ++.++|.+
T Consensus        20 ~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~   61 (280)
T 3nrc_A           20 HMGFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVG   61 (280)
T ss_dssp             --CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             cccccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCc
Confidence            345678899999995   3599999999999996 58887754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=92.22  E-value=0.13  Score=48.95  Aligned_cols=36  Identities=22%  Similarity=0.446  Sum_probs=31.6

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ....+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            345689999999999999999999997 699999653

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=92.19  E-value=0.37  Score=43.31  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=29.5

Q ss_pred             ccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |++++|+|.|+   ||+|.++++.|+..|. ++.++|.+
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~   41 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLN   41 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            66789999997   5899999999999995 57777643

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=92.17  E-value=0.44  Score=42.65  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=25.9

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      +++++|+|.|+ ||+|..+++.|+..|.. +.++|
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~   56 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSH   56 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            55677888885 67999999999999964 66655

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=92.16  E-value=0.089  Score=54.00  Aligned_cols=61  Identities=15%  Similarity=0.208  Sum_probs=38.3

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcC--CCcEEEEEecCCCCCCCccCCCC
Q 019513          255 VLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDAL--SARIRIVKIRGRSSQCEACGENS  315 (340)
Q Consensus       255 ~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~--~~~~~~~~l~~~~~~C~~Cg~~~  315 (340)
                      .++...+++++++++|++|++.+..+.+.+.++.+-..  ..-|.......++|.|++|+...
T Consensus       386 AIATTnAiVaGl~~lE~~Kvl~~~~~~~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~  448 (640)
T 1y8q_B          386 AIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKP  448 (640)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSC
T ss_pred             chhhHHHHHHHHHHHHHHHHHhccHHhhhhhheeeccCCCCcEEeecccCCCCCCCcccCCcc
Confidence            45567789999999999999987544333322222111  11233333446899999997554

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=92.15  E-value=0.75  Score=37.76  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=28.3

Q ss_pred             cc-CCcEEEEcC----ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LL-KSSILVIGA----GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~-~~~VlVvG~----GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |. ..+|+|||+    |.+|..++++|...|.. +..+|..
T Consensus        10 l~~p~~IavIGas~~~g~~G~~~~~~L~~~G~~-v~~vnp~   49 (145)
T 2duw_A           10 LTSTRTIALVGASDKPDRPSYRVMKYLLDQGYH-VIPVSPK   49 (145)
T ss_dssp             HHHCCCEEEESCCSCTTSHHHHHHHHHHHHTCC-EEEECSS
T ss_pred             HhCCCEEEEECcCCCCCChHHHHHHHHHHCCCE-EEEeCCc
Confidence            44 688999999    77999999999999984 5555543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=92.12  E-value=0.45  Score=42.42  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+.+.+.+...  ++..+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~   61 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNR-------------------EALEKAEASVREKGV--EARSY   61 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTTS--CEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--cEEEE
Confidence            467788999985 5799999999999996 477776432                   234445555554433  34455


Q ss_pred             cccCCcc-cHHh-------hcccCcEEEEcCC
Q 019513          169 REALRTS-NALE-------ILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~-~~~~-------~l~~~DlVi~~tD  192 (340)
                      ..+++.. ....       .+...|+||.+..
T Consensus        62 ~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg   93 (262)
T 1zem_A           62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAG   93 (262)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            5555542 2222       2347899998764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=92.11  E-value=0.14  Score=50.44  Aligned_cols=107  Identities=17%  Similarity=0.248  Sum_probs=66.6

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCC--CcEEEEeCCcccccCCccccccCCCccCcccHHHHHH-HHHhhCCCceE
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA-TCRSINSTVHI  165 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~-~L~~lnp~v~i  165 (340)
                      ++|++.||++.|+|..|..+++.|...|+  ++|.++|..-+=..+  |.      ++...+-...+. ..+..|+.   
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~--R~------~l~~~~~~~~k~~~A~~~n~~---  283 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNG--RE------DIKKDTRFYRKWEICETTNPS---  283 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTT--CH------HHHHCGGGHHHHHHHHHSCTT---
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCC--cc------hhhhhcccHHHHHHHHhcccc---
Confidence            57999999999999999999999999999  899999976431110  10      110000001111 12223331   


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCC---ChhhHHHHHHHHHHcCCcEEEEee
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATD---NAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD---~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                             ...++.+.++..|++|.++.   ..-+...|...+   ..|+|.+-+
T Consensus       284 -------~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma---~~PIIFaLS  327 (487)
T 3nv9_A          284 -------KFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMG---EKPIVFCCA  327 (487)
T ss_dssp             -------CCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSC---SSCEEEECC
T ss_pred             -------cCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhc---CCCEEEECC
Confidence                   12356777888899998872   233455555443   578887643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=92.08  E-value=0.23  Score=51.16  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~  423 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAG  423 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            45789999999999999999999996 59999874

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.07  E-value=0.44  Score=42.61  Aligned_cols=80  Identities=11%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+.+.+.+...  ++..+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   65 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAART-------------------VERLEDVAKQVTDTGR--RALSV   65 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            478889999986 5699999999999996 47777643                   2355666666666544  34445


Q ss_pred             cccCCcc-cHHhh-------cccCcEEEEcC
Q 019513          169 REALRTS-NALEI-------LSQYEIVVDAT  191 (340)
Q Consensus       169 ~~~~~~~-~~~~~-------l~~~DlVi~~t  191 (340)
                      ..+++.. ...++       +...|++|.+.
T Consensus        66 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           66 GTDITDDAQVAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            5555542 22222       24689998876

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.06  E-value=0.22  Score=46.21  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=28.6

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+ |++|..++..+...|. ++..+|.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~  182 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAG  182 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3678999999 9999999999999998 7777764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.04  E-value=0.82  Score=41.20  Aligned_cols=81  Identities=17%  Similarity=0.160  Sum_probs=51.7

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+                    .+.+...+.+.+..  .++..
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~--------------------~~~~~~~~~~~~~~--~~~~~   83 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRT--------------------DGVKEVADEIADGG--GSAEA   83 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS--------------------THHHHHHHHHHTTT--CEEEE
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCH--------------------HHHHHHHHHHHhcC--CcEEE
Confidence            3578899999986 5799999999999997 57776621                    12344455555443  34455


Q ss_pred             ecccCCccc-HHhh------cccCcEEEEcCC
Q 019513          168 HREALRTSN-ALEI------LSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~~-~~~~------l~~~DlVi~~tD  192 (340)
                      +..+++... ...+      +.+.|+||.+..
T Consensus        84 ~~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg  115 (273)
T 3uf0_A           84 VVADLADLEGAANVAEELAATRRVDVLVNNAG  115 (273)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHhcCCCcEEEECCC
Confidence            555555422 1111      236899888764

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=92.03  E-value=0.27  Score=43.76  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~   40 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLK   40 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889999986 6799999999999996 47777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	2e-60
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	7e-60
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	9e-55
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	3e-09
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	6e-05

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  200 bits (509), Expect = 2e-60
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 20/218 (9%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
           +Y R L L  +G  GQ  L  + + +I A   G+  L  L   G+G   I+D + V   +
Sbjct: 7   KYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 64

Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR--TSNALEILSQYEIVVDA 190
                      IG+++ ++A    + +NS V      E+      N      ++ +VV  
Sbjct: 65  AGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVAT 124

Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCY-----------RCLFP 239
                +   ++D       PL+     GL G + +      P             R   P
Sbjct: 125 QLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRII-IKEHPVIESHPDNALEDLRLDKP 183

Query: 240 TPPPTTACQRCA----DSGVLGVVPGIIGCLQALEAIK 273
            P      Q       +       P I+   + L    
Sbjct: 184 FPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWY 221

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score =  190 bits (483), Expect = 7e-60
 Identities = 96/248 (38%), Positives = 150/248 (60%), Gaps = 4/248 (1%)

Query: 66  LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
           LS   + RY+R ++L  F  +GQ  L  S +L++G GGLG  A  YLA+ GVG L ++D 
Sbjct: 3   LSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 62

Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
           D V L+N+ RQ +H++  +GQ KV+SA      IN  + I      L  +    ++++++
Sbjct: 63  DTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHD 122

Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG-PCYRCLFPTPPPT 244
           +V+D TDN   R  ++  C     PLVSGAA+ +EGQ+TV+ Y  G PCYRCL       
Sbjct: 123 LVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGEN 182

Query: 245 TACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR 304
                C ++GV+  + G+IG LQA+EAIK+ +  G+P SG+++++DA++ + R +K+  R
Sbjct: 183 --ALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLM-R 239

Query: 305 SSQCEACG 312
           +  CE CG
Sbjct: 240 NPGCEVCG 247

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  182 bits (463), Expect = 9e-55
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 16/191 (8%)

Query: 73  RYSRHLLLPSFGVEGQSNLLKSS-ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELN 131
            ++     P    E    LL +  +LVIGAGGLG   L  LA  G  ++ ++D D ++++
Sbjct: 18  PFTHPDFEP--STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 75

Query: 132 NMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDAT 191
           N++RQ +     IG+ K + AA          +++ H   ++  N      Q+ I+V   
Sbjct: 76  NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGL 134

Query: 192 DNAPSRYMISDCCVVLGK------------PLVSGAALGLEGQLTVYNYNGGPCYRCLFP 239
           D+  +R  I+   + L              PL+ G   G +G   V       C  C   
Sbjct: 135 DSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 194

Query: 240 TPPPTTACQRC 250
             PP      C
Sbjct: 195 LYPPQVNFPMC 205

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 3e-09
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 255 VLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCEACGE 313
            +     +I  + A E  K+A++   PL+  ++  D         +   R   C AC +
Sbjct: 280 AVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAE-RKENCPACSQ 337

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 13/124 (10%)

Query: 93  KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA 152
           K+ I+++G+G +G      +    +G + + D      +       HT            
Sbjct: 3   KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYS------ 56

Query: 153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212
                  N  V      + L  ++ + + + +      +D   +R  +      +   + 
Sbjct: 57  -------NCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIG 109

Query: 213 SGAA 216
               
Sbjct: 110 GHIK 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.15
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.99
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.85
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.77
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.72
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.64
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.59
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.51
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.46
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.46
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.4
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.32
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.27
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.23
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.19
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.18
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.16
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.13
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.12
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.1
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.06
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.06
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.04
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.04
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.02
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.02
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.01
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.96
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.93
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.93
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.91
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.87
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.81
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.8
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.77
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.72
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.71
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.7
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.68
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.66
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.65
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.65
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.63
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.6
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.55
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	96.54
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.53
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.53
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.49
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.48
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.47
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.44
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.3
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.25
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.25
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.2
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.14
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.1
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.05
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.04
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.95
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.91
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.91
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.9
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.86
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.82
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.81
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.81
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.79
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.78
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.78
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.76
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.75
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.74
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.69
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	95.68
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.55
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.54
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.53
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.52
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.52
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.52
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.51
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.5
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.5
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.45
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.4
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.35
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.32
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.23
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.19
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.19
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.18
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.18
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	95.17
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.16
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.12
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.11
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.1
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.09
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.07
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.06
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.06
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.05
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.04
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	95.04
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.03
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.01
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.0
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.99
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.98
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.98
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.92
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.91
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.91
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.86
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	94.86
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.84
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.83
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.82
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.8
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.8
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.78
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.77
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.77
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.73
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.7
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.68
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.64
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.62
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.59
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	94.57
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.56
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.5
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.43
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.4
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	94.31
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.31
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.28
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	94.28
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.28
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.27
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.27
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.25
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.24
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	94.22
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.19
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.17
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.17
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.1
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.09
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.09
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.08
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.06
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.05
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.02
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.02
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.01
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.0
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.92
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.92
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.9
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.86
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.79
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.78
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.74
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.74
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.72
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.7
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.7
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.66
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.65
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	93.64
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.62
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.57
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.55
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.52
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.47
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.45
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.38
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.36
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.33
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.23
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.19
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.17
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.09
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.06
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.02
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.92
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	92.89
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.87
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.83
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	92.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.78
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.76
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.69
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.66
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.65
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.47
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.42
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.34
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.33
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.3
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.29
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.28
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.25
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.18
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.11
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.01
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	91.91
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.9
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	91.83
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	91.79
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.77
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.74
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.73
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.68
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.62
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	91.51
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.47
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.39
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.32
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.32
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.29
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.26
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.24
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.24
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	91.22
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.12
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	91.09
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	90.98
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	90.98
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.97
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	90.9
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.77
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.75
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.68
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	90.62
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	90.55
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.54
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.24
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	90.22
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	90.21
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.16
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.12
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	89.96
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	89.94
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.93
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.92
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	89.84
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	89.82
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.71
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.44
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.4
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.38
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.36
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	89.3
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	89.13
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.99
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	88.91
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.79
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	88.78
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.74
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	88.65
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	88.6
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	88.56
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.47
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.33
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	88.27
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	88.24
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.16
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	87.8
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.62
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.54
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.35
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	87.29
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	86.99
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	86.96
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	86.63
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	86.57
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	86.39
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.37
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	86.27
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	86.05
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.04
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.89
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	85.69
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	85.64
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	85.44
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	85.43
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.16
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	85.16
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	85.16
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	85.1
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.96
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	84.78
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.74
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	84.72
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.65
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	84.61
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.46
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	84.45
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.43
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	84.34
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	83.93
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.53
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	83.48
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	83.16
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	82.92
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	82.83
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	81.69
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	81.53
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	81.39
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.33
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	80.63
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	80.39
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	80.24
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	80.13
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	80.09
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	80.02

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-59  Score=427.50  Aligned_cols=245  Identities=39%  Similarity=0.732  Sum_probs=229.7

Q ss_pred             CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513           65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI  144 (340)
Q Consensus        65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di  144 (340)
                      +||++|++||+||+.|++||.++|++|++++|+|+|+||+||+++++|+++|||+|+|||+|.|+++||+||++|+++||
T Consensus         2 ~l~~~e~~ry~Rqi~l~~~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~di   81 (247)
T d1jw9b_           2 ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATV   81 (247)
T ss_dssp             CCCHHHHHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGT
T ss_pred             CCCHHHHHHhhceeccccCCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhc
Confidence            59999999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513          145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT  224 (340)
Q Consensus       145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~  224 (340)
                      |++|+++++++|+++||+++|+.+...++..+...++..+|+||+|+|++..++++|++|+++++|+|++++.++.|++.
T Consensus        82 G~~K~~~a~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~~~g~~~  161 (247)
T d1jw9b_          82 GQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQIT  161 (247)
T ss_dssp             TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEE
T ss_pred             CchHHHHHHHHHHHhhcccchhhhhhhhhhccccccccccceeeeccchhhhhhhHHHHHHHhCCCcccccccccccceE
Confidence            99999999999999999999999999999888888999999999999999999999999999999999999999999998


Q ss_pred             EEe-CCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecC
Q 019513          225 VYN-YNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG  303 (340)
Q Consensus       225 v~~-~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~  303 (340)
                      ++. ++.+||+.|+++..+..  ..+|...|+++|+++++|+++|+|+||+|+|.++++.++++.||..+.+++.+++. 
T Consensus       162 ~~~~~~~~~c~~c~~~~~~~~--~~~~~~~g~~~p~~~~v~~~~a~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~-  238 (247)
T d1jw9b_         162 VFTYQDGEPCYRCLSRLFGEN--ALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLM-  238 (247)
T ss_dssp             EECCCTTCCCTHHHHTTCCC---------CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEEEEEECC-
T ss_pred             EEeecCCcccccccccccccc--cCCcccCCcccccchhHHHHHHHHHHHHHhcCCCcCcCcEEEEECCCCEEEEEecC-
Confidence            876 67899999999877653  35788899999999999999999999999999999999999999999999999987 


Q ss_pred             CCCCCCccC
Q 019513          304 RSSQCEACG  312 (340)
Q Consensus       304 ~~~~C~~Cg  312 (340)
                      ++|+||+||
T Consensus       239 ~~~~C~vCG  247 (247)
T d1jw9b_         239 RNPGCEVCG  247 (247)
T ss_dssp             CCTTCTTTC
T ss_pred             cCcCCCCCC
Confidence            899999998

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-46  Score=364.35  Aligned_cols=238  Identities=24%  Similarity=0.375  Sum_probs=205.8

Q ss_pred             hhhhhccCCCCC-HHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHH
Q 019513           73 RYSRHLLLPSFG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS  151 (340)
Q Consensus        73 ry~Rq~~l~~~G-~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~  151 (340)
                      +|+|+...  -| ...|.+|+++||+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||+||+++|||++|+++
T Consensus        18 ~~~~~~~~--~~~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~   95 (426)
T d1yovb1          18 PFTHPDFE--PSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEV   95 (426)
T ss_dssp             TTCCTTCC--CCSSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHH
T ss_pred             CCcCcccc--cChHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHH
Confidence            34554444  34 4568889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH------------HcCCcEEEEeecCc
Q 019513          152 AAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV------------VLGKPLVSGAALGL  219 (340)
Q Consensus       152 a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~------------~~~~p~i~~~~~g~  219 (340)
                      ++++|+++||+++|.++...+...+ .+++++||+||+|+|++.+|+++|+.|+            +.++|+|++++.|+
T Consensus        96 a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~  174 (426)
T d1yovb1          96 AAEFLNDRVPNCNVVPHFNKIQDFN-DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGF  174 (426)
T ss_dssp             HHHHHHHHSTTCCCEEECSCGGGBC-HHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETT
T ss_pred             HHHHHHhhCCCCceEeeeccccchH-HHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeee
Confidence            9999999999999999999887655 5788999999999999999999999997            45789999999999


Q ss_pred             eeEEEEEeCCCCCceeecCCCCCCCccccccc------------------------------------------------
Q 019513          220 EGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA------------------------------------------------  251 (340)
Q Consensus       220 ~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~------------------------------------------------  251 (340)
                      .|++.++.|+.++||+|.++..|+....+.|.                                                
T Consensus       175 ~G~~~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~~~~~~~~~~~~~d~dd~~~i~~i~~~a~  254 (426)
T d1yovb1         175 KGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL  254 (426)
T ss_dssp             EEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTSTTCCCCTTCHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhcccccccccccCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988776655544441                                                


Q ss_pred             ----------------------CCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc-EEEEEecCCCCCC
Q 019513          252 ----------------------DSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQC  308 (340)
Q Consensus       252 ----------------------~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~-~~~~~l~~~~~~C  308 (340)
                                            -.+.++++++++|+++++|++|++++...|..+ +++|+...+. +..+++. |+|+|
T Consensus       255 ~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~p~~n-~~~~~~~~~~~~~~~~~~-k~~~C  332 (426)
T d1yovb1         255 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNN-YLVFNDVDGLYTYTFEAE-RKENC  332 (426)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCS-EEEEECSBSCEEEEECCC-CCTTC
T ss_pred             HHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCccccc-eEEEecCCCceEeeeecc-CCCCC
Confidence                                  013466778999999999999999999999877 4556666654 6666665 89999


Q ss_pred             CccCCCC
Q 019513          309 EACGENS  315 (340)
Q Consensus       309 ~~Cg~~~  315 (340)
                      ++||..+
T Consensus       333 ~vC~~~~  339 (426)
T d1yovb1         333 PACSQLP  339 (426)
T ss_dssp             TTTCSSC
T ss_pred             CeeCCce
Confidence            9999965

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=293.95  Aligned_cols=204  Identities=20%  Similarity=0.254  Sum_probs=166.2

Q ss_pred             HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513           71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK  150 (340)
Q Consensus        71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~  150 (340)
                      .+|||||+++  ||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|||++|++
T Consensus         5 e~rYdRQlrl--wG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~   82 (529)
T d1yova1           5 EQKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAE   82 (529)
T ss_dssp             HHHTHHHHHH--HHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHH
T ss_pred             hhhhhHHHHh--hhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHH
Confidence            4699999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCceEEEecccCCc--ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513          151 SAAATCRSINSTVHIIEHREALRT--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY  228 (340)
Q Consensus       151 ~a~~~L~~lnp~v~i~~~~~~~~~--~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~  228 (340)
                      +++++|+++||++++..+...+..  ++..+++.++|+||+|.|+...+..|+++|+++++|+|.+++.|+.|++++..+
T Consensus        83 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~v~~~~~  162 (529)
T d1yova1          83 AAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIK  162 (529)
T ss_dssp             HHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECS
T ss_pred             HHHHHHHHhCCCCcEEEEcCCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCCEEEEEEEeC
Confidence            999999999999999887766543  334577899999999999999999999999999999999999999999988764


Q ss_pred             CCCCceeec---------CCCCCCC--cccccc----cCCCccccHHHHHHHHHHHHHHHHHhc
Q 019513          229 NGGPCYRCL---------FPTPPPT--TACQRC----ADSGVLGVVPGIIGCLQALEAIKVASA  277 (340)
Q Consensus       229 ~~~pC~~C~---------~~~~~~~--~~~~~c----~~~g~~gpv~~i~g~l~A~eaik~l~g  277 (340)
                      . .++..+.         ...+.|.  ..+.++    .+...++.+|.++-.+.+++-++-..+
T Consensus       163 ~-~~~~e~~p~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~vP~~vil~~~l~~~~~~~~  225 (529)
T d1yova1         163 E-HPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETN  225 (529)
T ss_dssp             C-EEESCCCCSSCCCCCCSSSCCHHHHHHHHTCCSSSSCHHHHTTSCHHHHHHHHHHHHHHHTC
T ss_pred             C-ceEEecCCCCCCCccccCCCcHHHHHHHhhcCcccCCccccCcCchHHHHHHHHHHHHHhcC
Confidence            3 2232221         1111100  000111    112235567777777777776665543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.15  E-value=8.5e-06  Score=63.26  Aligned_cols=93  Identities=15%  Similarity=0.168  Sum_probs=68.7

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      -.|++++|+|||.|.+|..-++.|..+|. ++++++.+.-                     ......+.    .-.+...
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~---------------------~~~~~~~~----~~~i~~~   61 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFI---------------------PQFTVWAN----EGMLTLV   61 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCC---------------------HHHHHHHT----TTSCEEE
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC---------------------hHHHHHHh----cCCceee
Confidence            46899999999999999999999999995 5888876431                     11112121    1223334


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcE
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL  211 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~  211 (340)
                      ...+.+    +.+.++++|+.|+++.+....+...|++.++|+
T Consensus        62 ~~~~~~----~dl~~~~lv~~at~d~~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          62 EGPFDE----TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             ESSCCG----GGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred             ccCCCH----HHhCCCcEEeecCCCHHHHHHHHHHHHHcCCEE
Confidence            444443    346789999999999998889999999999964

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=5.3e-06  Score=69.91  Aligned_cols=84  Identities=17%  Similarity=0.189  Sum_probs=58.5

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||.|..++..|...|+.+|+|++.+.                --..|+...++++..-.+.. +..  
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~----------------~~~~~~~~l~~~~~~~~~~~-~~~--   75 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTDCV-VTV--   75 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------TTHHHHHHHHHHHHHHSSCE-EEE--
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch----------------HHHHHHHHHHHHHHhhcCcc-eEe--
Confidence            47889999999999999999999999999999998531                01134455555665554432 221  


Q ss_pred             ccCC-cccHHhhcccCcEEEEcCC
Q 019513          170 EALR-TSNALEILSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~-~~~~~~~l~~~DlVi~~tD  192 (340)
                      ..+. .+...+.+..+|+||+||.
T Consensus        76 ~~~~~~~~~~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          76 TDLADQQAFAEALASADILTNGTK   99 (182)
T ss_dssp             EETTCHHHHHHHHHTCSEEEECSS
T ss_pred             eecccccchhhhhcccceeccccC
Confidence            1222 2334556688999999985

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.85  E-value=4e-05  Score=63.22  Aligned_cols=93  Identities=19%  Similarity=0.283  Sum_probs=65.4

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .|++++|+|||+|.+|..++++|...|+++++++...                   ..|++.+++.+   +  .++.   
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt-------------------~~ka~~l~~~~---~--~~~~---   73 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT-------------------YERAVELARDL---G--GEAV---   73 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS-------------------HHHHHHHHHHH---T--CEEC---
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc-------------------HHHHHHHHHhh---h--cccc---
Confidence            6899999999999999999999999999999996422                   23555555443   2  2221   


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChh---hHHHHHHHHHH--cCCcEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAP---SRYMISDCCVV--LGKPLV  212 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~---~r~~i~~~~~~--~~~p~i  212 (340)
                         .-++..+.+.++|+||.||..+.   .+..+.....+  .+.|++
T Consensus        74 ---~~~~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~  118 (159)
T d1gpja2          74 ---RFDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPIL  118 (159)
T ss_dssp             ---CGGGHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             ---cchhHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeE
Confidence               22455667889999999997654   35556555443  345644

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=5.4e-05  Score=56.48  Aligned_cols=91  Identities=18%  Similarity=0.224  Sum_probs=59.2

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+|..|..+|++|...|. +++++|...- +...                       ..+...+.+..- 
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~-~~~~-----------------------~~~~~~~~~~~~-   55 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMT-PPGL-----------------------DKLPEAVERHTG-   55 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSS-CTTG-----------------------GGSCTTSCEEES-
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcC-chhH-----------------------HHHhhccceeec-
Confidence            3789999999999999999999999994 5788885321 0000                       011112222111 


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                       ..    ....+.++|+||....-+.... +-..+++.|+|+|
T Consensus        56 -~~----~~~~~~~~d~vi~SPGi~~~~~-~~~~a~~~gi~ii   92 (93)
T d2jfga1          56 -SL----NDEWLMAADLIVASPGIALAHP-SLSAAADAGIEIV   92 (93)
T ss_dssp             -BC----CHHHHHHCSEEEECTTSCTTSH-HHHHHHHTTCEEE
T ss_pred             -cc----chhhhccCCEEEECCCCCCCCH-HHHHHHHcCCCeE
Confidence             11    1344678999998877655544 4446788899987

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.72  E-value=0.00011  Score=59.96  Aligned_cols=96  Identities=14%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +++|+|+|+|.+|..+|++|+..|. +++++|.+.                   .|++.    +.+-.+...+.... ..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~-------------------~~a~~----l~~~~~~~~~~~~~-~~   56 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL-------------------ESAKK----LSAGVQHSTPISLD-VN   56 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHH----HHTTCTTEEEEECC-TT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh-------------------HHHHH----HHhccccccccccc-cc
Confidence            6899999999999999999999998 699998543                   23333    33444443333222 22


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      ........+...|+++.++.. .....+...+.+.+..++..
T Consensus        57 ~~~~~~~~i~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~   97 (182)
T d1e5qa1          57 DDAALDAEVAKHDLVISLIPY-TFHATVIKSAIRQKKHVVTT   97 (182)
T ss_dssp             CHHHHHHHHTTSSEEEECSCG-GGHHHHHHHHHHHTCEEECS
T ss_pred             chhhhHhhhhccceeEeeccc-hhhhHHHHHHHhhccceeec
Confidence            233445667788999977754 34455666777888877754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=6.3e-05  Score=60.94  Aligned_cols=108  Identities=18%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccc-cCCccccccCCCccCcccHHHHHHHHHh---------
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL-NNMHRQVIHTEPYIGQSKVKSAAATCRS---------  158 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~-sNL~Rq~l~~~~diG~~Ka~~a~~~L~~---------  158 (340)
                      .+|++++|+|||.|.+|.+-++.|..+|. ++++|+++.-+. .-+....          +.......+..         
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~   77 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKF----------IQNKDQPDYREDAKRFINPN   77 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCGG----------GC-----------CEEECTT
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHHHHhc----------cchhhhhhhhhhhhhhcchh
Confidence            36899999999999999999999999995 899997653210 0000000          00000000000         


Q ss_pred             h--CCCceEEEecccCCcccH--HhhcccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513          159 I--NSTVHIIEHREALRTSNA--LEILSQYEIVVDATDNAPSRYMISDCCVVL  207 (340)
Q Consensus       159 l--np~v~i~~~~~~~~~~~~--~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~  207 (340)
                      .  .-.-.+......+.+...  ...+..+++|+.|+++++....|...|+..
T Consensus        78 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~lVi~at~d~~~n~~i~~~a~~~  130 (150)
T d1kyqa1          78 WDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKER  130 (150)
T ss_dssp             CCTTSCCCSEEECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             hhhccccceEEEecccchhhhcccccccceEEEEeecCCHHHHHHHHHHHHHh
Confidence            0  000112333333333221  122357899999999999888888888764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.59  E-value=9.7e-05  Score=60.89  Aligned_cols=93  Identities=15%  Similarity=0.146  Sum_probs=60.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHH--HhhCCCceEEEecc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATC--RSINSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L--~~lnp~v~i~~~~~  170 (340)
                      +++|.|+|+|.+|+.+|..|++.|. .+.++|.+.                   .+++.+.+.-  ....|..+......
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA-------------------QRIKEIQDRGAIIAEGPGLAGTAHPD   60 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHHHHHHTSEEEESSSCCEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHcCCCchhhhhhhhhhhhh
Confidence            5799999999999999999999996 788887542                   1222222110  01122233333222


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV  206 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~  206 (340)
                      ..+ .+..+.++++|+||.|+.....+..+.++...
T Consensus        61 ~~~-~~~~e~~~~aD~iii~v~~~~~~~~~~~i~~~   95 (184)
T d1bg6a2          61 LLT-SDIGLAVKDADVILIVVPAIHHASIAANIASY   95 (184)
T ss_dssp             EEE-SCHHHHHTTCSEEEECSCGGGHHHHHHHHGGG
T ss_pred             hhh-hhhHhHhcCCCEEEEEEchhHHHHHHHHhhhc
Confidence            222 34567789999999999888877777776543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=7.8e-05  Score=61.72  Aligned_cols=34  Identities=21%  Similarity=0.454  Sum_probs=31.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++++|+|+|+||.+..++..|...|+++|+|++.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            6889999999999999999999999999999753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.46  E-value=0.00024  Score=55.95  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|+|+|+|.+|..+++.|...|. .+.+||.|.                   .+++.++    +.. +..  .+..+.+.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~-------------------~~~~~~~----~~~-~~~--vi~Gd~~~   54 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICKKAS----AEI-DAL--VINGDCTK   54 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHH----HHC-SSE--EEESCTTS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCCh-------------------hhhhhhh----hhh-hhh--hccCcccc
Confidence            79999999999999999999994 589998764                   1333332    221 222  33333333


Q ss_pred             ccH-Hh-hcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          175 SNA-LE-ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       175 ~~~-~~-~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                      ... .+ -++++|.++.++++.+....+...++..+.+-+
T Consensus        55 ~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          55 IKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             HHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCE
T ss_pred             hhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceE
Confidence            222 22 257899999999998888888888888877633

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=7.4e-05  Score=61.89  Aligned_cols=75  Identities=23%  Similarity=0.257  Sum_probs=52.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||.+..++..|...|+ +|+|++.+                   ..|++.+++.+...++   +....
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt-------------------~~ka~~l~~~~~~~~~---~~~~~   71 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRT-------------------VSRAEELAKLFAHTGS---IQALS   71 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS-------------------HHHHHHHHHHTGGGSS---EEECC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccch-------------------HHHHHHHHHHHhhccc---ccccc
Confidence            4678999999999999999999999998 59987532                   2466666666655542   22221


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      .  .  +  .....+|+||+||--
T Consensus        72 ~--~--~--~~~~~~dliIN~Tp~   89 (170)
T d1nyta1          72 M--D--E--LEGHEFDLIINATSS   89 (170)
T ss_dssp             S--G--G--GTTCCCSEEEECCSC
T ss_pred             c--c--c--ccccccceeeccccc
Confidence            1  1  1  113568999999854

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.40  E-value=8.9e-05  Score=60.74  Aligned_cols=77  Identities=13%  Similarity=0.140  Sum_probs=52.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh----CCCceEEE
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI----NSTVHIIE  167 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l----np~v~i~~  167 (340)
                      |..||.|||+|.+|+.+|..|+..|+.++.|+|-+                   +.|++..+.-+...    +....+..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~~~~   66 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV-------------------KGMPEGKALDLSHVTSVVDTNVSVRA   66 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-------------------SSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec-------------------cccchhHHHHHhhhccccCCeeEEec
Confidence            56899999999999999999999999999999732                   23555555555443    21222211


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCC
Q 019513          168 HREALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                            ..+..+.+++.|+||.+...
T Consensus        67 ------~~~~~~~~~~adiVvitag~   86 (154)
T d1pzga1          67 ------EYSYEAALTGADCVIVTAGL   86 (154)
T ss_dssp             ------ECSHHHHHTTCSEEEECCSC
T ss_pred             ------cCchhhhhcCCCeEEEeccc
Confidence                  12224556889999988743

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.32  E-value=0.0021  Score=50.13  Aligned_cols=94  Identities=18%  Similarity=0.149  Sum_probs=58.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ++++|+|+|.+|..+++.|...|. .++++|.|.-                       ..+.+++..  ..+  +....+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~-----------------------~~~~~~~~~--~~~--~~gd~~   52 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEE-----------------------KVNAYASYA--THA--VIANAT   52 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHH-----------------------HHHHTTTTC--SEE--EECCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHH-----------------------HHHHHHHhC--Ccc--eeeecc
Confidence            579999999999999999999996 5888887652                       111222221  111  112223


Q ss_pred             c-ccHHh-hcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEe
Q 019513          174 T-SNALE-ILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       174 ~-~~~~~-~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      . +...+ -+.++|.||.++.+ ......+......++.+-|.+-
T Consensus        53 ~~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          53 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             CTTHHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cchhhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEee
Confidence            2 22222 25789988877765 4555556666677776655443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.27  E-value=0.00028  Score=57.02  Aligned_cols=76  Identities=25%  Similarity=0.356  Sum_probs=50.9

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+                   +.|++  +..+........   ....
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~-------------------~~~~~--a~Dl~~~~~~~~---~~~~   56 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA-------------------HTPGV--AADLSHIETRAT---VKGY   56 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS-------------------SHHHH--HHHHTTSSSSCE---EEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecc-------------------ccchh--hHHHhhhhhhcC---CCeE
Confidence            68999996 9999999999999997 899999832                   12333  223332222222   2222


Q ss_pred             CCcccHHhhcccCcEEEEcCCC
Q 019513          172 LRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      +...+..+.++++|+||.+...
T Consensus        57 ~~~~~~~~~~~~aDivVitag~   78 (144)
T d1mlda1          57 LGPEQLPDCLKGCDVVVIPAGV   78 (144)
T ss_dssp             ESGGGHHHHHTTCSEEEECCSC
T ss_pred             EcCCChHHHhCCCCEEEECCCc
Confidence            3345556778999999987664

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.23  E-value=0.00059  Score=55.68  Aligned_cols=94  Identities=18%  Similarity=0.258  Sum_probs=57.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+.+|+|+|+|++|..++..+...|. ++.++|.+.                   .|.    +.++++..+..+......
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~-------------------~r~----~~a~~~ga~~~~~~~~~~   81 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSP-------------------RRL----EVAKNCGADVTLVVDPAK   81 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHH----HHHHHTTCSEEEECCTTT
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc-cccccchHH-------------------HHH----HHHHHcCCcEEEeccccc
Confidence            45789999999999999999999997 788887432                   232    233444444333222222


Q ss_pred             CCcccHHhhc-----ccCcEEEEcCCChhhHHHHHHHHHHcCC
Q 019513          172 LRTSNALEIL-----SQYEIVVDATDNAPSRYMISDCCVVLGK  209 (340)
Q Consensus       172 ~~~~~~~~~l-----~~~DlVi~~tD~~~~r~~i~~~~~~~~~  209 (340)
                      -...+..+.+     ..+|+||+|+.+..+....-+.++..|.
T Consensus        82 ~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~  124 (170)
T d1e3ja2          82 EEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGT  124 (170)
T ss_dssp             SCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCE
T ss_pred             cccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCc
Confidence            2212222222     4589999999987765444445544443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00068  Score=59.59  Aligned_cols=87  Identities=21%  Similarity=0.261  Sum_probs=68.4

Q ss_pred             HHHcccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           87 GQSNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      ++++|+++.|+|.|++ |+|.++|+.|++.|. ++.+.|.+                   ..|.+.+++.+++.++..++
T Consensus         4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~   63 (257)
T d1xg5a_           4 GMERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTL   63 (257)
T ss_dssp             TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEE
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCceE
Confidence            4678999999999865 699999999999997 57777642                   35788899999999888888


Q ss_pred             EEecccCCccc-H-------HhhcccCcEEEEcCCC
Q 019513          166 IEHREALRTSN-A-------LEILSQYEIVVDATDN  193 (340)
Q Consensus       166 ~~~~~~~~~~~-~-------~~~l~~~DlVi~~tD~  193 (340)
                      ..+..+++.+. .       .+.+...|++|.+...
T Consensus        64 ~~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          64 IPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGL   99 (257)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence            88888887532 2       2234678999988654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00036  Score=57.32  Aligned_cols=80  Identities=21%  Similarity=0.357  Sum_probs=54.7

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC---CCc
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN---STV  163 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln---p~v  163 (340)
                      +.+++..||.|||+|.+|+.+|..|+..|.. +|.|+|.+                   ..|++.-+.-|...-   +..
T Consensus        14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~-------------------~~~a~g~alDl~~~~~~~~~~   74 (159)
T d2ldxa1          14 EDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD-------------------TDKLRGEALDLQHGSLFLSTP   74 (159)
T ss_dssp             CCCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC-------------------HHHHHHHHHHHHHTTTTCSCC
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhhhccHHHHhCcchhcCCC
Confidence            4567888999999999999999999999975 69998743                   235555555555432   222


Q ss_pred             eEEEecccCCcccHHhhcccCcEEEEcCCC
Q 019513          164 HIIEHREALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       164 ~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      .+...       +..+.+.++|+||.+...
T Consensus        75 ~~~~~-------~d~~~~~~adivvitag~   97 (159)
T d2ldxa1          75 KIVFG-------KDYNVSANSKLVIITAGA   97 (159)
T ss_dssp             EEEEE-------SSGGGGTTEEEEEECCSC
T ss_pred             eEEec-------cchhhhccccEEEEeccc
Confidence            22111       113456889999987654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.16  E-value=0.00018  Score=59.65  Aligned_cols=122  Identities=13%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .++|.|||+|.+|+++|++|++.|. ++.++|.+.=....+..+........|-..++...    +......+......-
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~ii~~~~~   76 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMV----SKLKKPRRIILLVKA   76 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHH----HHBCSSCEEEECSCT
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccccccchhhhhhhh----hhhcccceEEEecCc
Confidence            5789999999999999999999997 57787754322112211111111112222222222    222222222111111


Q ss_pred             Cc------ccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          173 RT------SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       173 ~~------~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ..      +.....++.=++|||++-. +..-..+.+.+.+.++.++++...|.
T Consensus        77 ~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg  130 (176)
T d2pgda2          77 GQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGG  130 (176)
T ss_dssp             THHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             hHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccC
Confidence            10      1223344556788888654 44445677888889999998766543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.13  E-value=0.00046  Score=57.17  Aligned_cols=94  Identities=18%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ++.+|+|+|+|++|..++..+...|..++..+|.+.                   .|.+.+    +++..+-.+...+..
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~-------------------~r~~~a----~~lGa~~~i~~~~~~   83 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP-------------------ICVEAA----KFYGATDILNYKNGH   83 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH-------------------HHHHHH----HHHTCSEEECGGGSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh-------------------hhHHHH----HhhCccccccccchh
Confidence            467899999999999999999999999999987542                   233333    334322222221111


Q ss_pred             CCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHHcCC
Q 019513          172 LRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGK  209 (340)
Q Consensus       172 ~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~~~~  209 (340)
                      + .+...++.  ..+|+||+|+.+..+-...-++++..+.
T Consensus        84 ~-~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~  122 (174)
T d1jqba2          84 I-EDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGI  122 (174)
T ss_dssp             H-HHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEE
T ss_pred             H-HHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCE
Confidence            1 12223333  3499999999987654443344443333

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.12  E-value=0.00041  Score=57.47  Aligned_cols=75  Identities=24%  Similarity=0.297  Sum_probs=53.5

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+|+|+||.+..++..|.. |..+|+|+...                   ..|++.+++.+....   .+....
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR~-------------------~~~a~~l~~~~~~~~---~~~~~~   71 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANRT-------------------FSKTKELAERFQPYG---NIQAVS   71 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccch-------------------HHHHHHHHHHHhhcc---ccchhh
Confidence            4678999999999999999999986 66899997532                   246777777776544   233222


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      ..      ...+.++|+||.||..
T Consensus        72 ~~------~~~~~~~diiIN~tp~   89 (171)
T d1p77a1          72 MD------SIPLQTYDLVINATSA   89 (171)
T ss_dssp             GG------GCCCSCCSEEEECCCC
T ss_pred             hc------cccccccceeeecccc
Confidence            21      1124679999999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00095  Score=54.61  Aligned_cols=92  Identities=21%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+.+|+|+|+|++|..++..+...|..++.++|.+.                   .|.+.+    +++..+..+......
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~-------------------~rl~~a----~~~Ga~~~~~~~~~~   82 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA-------------------TRLSKA----KEIGADLVLQISKES   82 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH-------------------HHHHHH----HHTTCSEEEECSSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH-------------------HHHHHH----HHhCCcccccccccc
Confidence            356899999999999999999999999999988542                   233322    333333222211111


Q ss_pred             CCcccHHhh-----cccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513          172 LRTSNALEI-----LSQYEIVVDATDNAPSRYMISDCCVVLG  208 (340)
Q Consensus       172 ~~~~~~~~~-----l~~~DlVi~~tD~~~~r~~i~~~~~~~~  208 (340)
                        .....+.     -..+|+||+|+.+..+....-+.++..|
T Consensus        83 --~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG  122 (171)
T d1pl8a2          83 --PQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGG  122 (171)
T ss_dssp             --HHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTC
T ss_pred             --cccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCC
Confidence              1111111     1468999999998776554444444433

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.06  E-value=0.0015  Score=52.95  Aligned_cols=75  Identities=15%  Similarity=0.229  Sum_probs=52.0

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh----CCCceEEEe
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI----NSTVHIIEH  168 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l----np~v~i~~~  168 (340)
                      +.||.|||+|.+|+.+|..|+..++.+|.|+|-+                   ..|++..+.-|...    +....+...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~v~~~   63 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV-------------------KNMPHGKALDTSHTNVMAYSNCKVSGS   63 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS-------------------SSHHHHHHHHHHTHHHHHTCCCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc-------------------CCcceeeecchhhhccccCCCcEEEec
Confidence            4689999999999999999999999999999832                   23444444444432    223333332


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC
Q 019513          169 REALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      .       ..+.++++|+||.+...
T Consensus        64 ~-------~~~~~~~advvvitag~   81 (150)
T d1t2da1          64 N-------TYDDLAGADVVIVTAGF   81 (150)
T ss_dssp             C-------CGGGGTTCSEEEECCSC
T ss_pred             c-------cccccCCCcEEEEeccc
Confidence            1       23456889999988774

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.06  E-value=0.00028  Score=58.55  Aligned_cols=80  Identities=20%  Similarity=0.174  Sum_probs=53.2

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .++++++|+|+|+||.+..++..|.  +.++|+|+..+                   ..|++.+++.+....+...+...
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~--~~~~i~I~nR~-------------------~~ka~~l~~~~~~~~~~~~~~~~   72 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELA--KDNNIIIANRT-------------------VEKAEALAKEIAEKLNKKFGEEV   72 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHT--SSSEEEEECSS-------------------HHHHHHHHHHHHHHHTCCHHHHE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHc--cccceeeehhh-------------------hhHHHHHHHHHHHhhchhhhhhh
Confidence            3589999999999999999998885  56689987532                   24777777777665432211000


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC
Q 019513          169 REALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                          .-.+....+..+|+||.||..
T Consensus        73 ----~~~~~~~~~~~~dliIn~tp~   93 (177)
T d1nvta1          73 ----KFSGLDVDLDGVDIIINATPI   93 (177)
T ss_dssp             ----EEECTTCCCTTCCEEEECSCT
T ss_pred             ----hhhhhhhccchhhhhccCCcc
Confidence                001122234679999999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.04  E-value=0.0013  Score=54.35  Aligned_cols=85  Identities=18%  Similarity=0.236  Sum_probs=55.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+.+|+|+|+||+|...+..+...|..+|..+|.+.                   .|.+.++    ++.-+..|+..+..
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~-------------------~kl~~Ak----~~GA~~~in~~~~~   85 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK-------------------DKFEKAM----AVGATECISPKDST   85 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-------------------GGHHHHH----HHTCSEEECGGGCS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH-------------------HHHHHHH----hcCCcEEECccccc
Confidence            367799999999999999999999999999988432                   3444443    33323333222211


Q ss_pred             CCcccHHhhc--ccCcEEEEcCCChhhHHH
Q 019513          172 LRTSNALEIL--SQYEIVVDATDNAPSRYM  199 (340)
Q Consensus       172 ~~~~~~~~~l--~~~DlVi~~tD~~~~r~~  199 (340)
                      ...+...+..  .++|+||+++....+...
T Consensus        86 ~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~  115 (176)
T d1d1ta2          86 KPISEVLSEMTGNNVGYTFEVIGHLETMID  115 (176)
T ss_dssp             SCHHHHHHHHHTSCCCEEEECSCCHHHHHH
T ss_pred             hHHHHHHHHhccccceEEEEeCCchHHHHH
Confidence            1111122222  579999999998775543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.04  E-value=0.0016  Score=52.53  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=31.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      ++.||.|||+|.+|+.+|..|+..|+ .+|.|+|-|
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            46799999999999999999999996 689999854

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00078  Score=54.25  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      ||+|+|+|.+|+.++..|+++|. .++++|.+.-....+..                       ...+.......  +. 
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~-----------------------~~~~~~~~~~~--~~-   54 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNL-----------------------VETDGSIFNES--LT-   54 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEE-----------------------ECTTSCEEEEE--EE-
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhcc-----------------------ccCCccccccc--cc-
Confidence            79999999999999999999996 68998865432211110                       01111111111  11 


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEE
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG  214 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~  214 (340)
                      .+..+.+..+|+||.|+-.......+..+...  .+.++++.
T Consensus        55 ~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          55 ANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             ESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             cchhhhhcccceEEEeecccchHHHHHhhccccCcccEEeec
Confidence            11234457899999999998888777776543  24556654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.02  E-value=0.0018  Score=53.03  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=54.1

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh---CCCce
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---NSTVH  164 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l---np~v~  164 (340)
                      ..+.+.||.|||+|.+|+.+|..|+..|+ .+|.|+|-+                   +.+++.-+.-|...   .+...
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~-------------------~~~a~g~alDl~h~~~~~~~~~   76 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVL-------------------EDKLKGEMMDLQHGSLFLQTPK   76 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCCCSE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec-------------------cchhHHHHHHHhccccccCCCe
Confidence            35678899999999999999999999997 679999743                   33444444444432   22222


Q ss_pred             EEEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          165 IIEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       165 i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      +.. .      ...+.++++|+||.+...+
T Consensus        77 ~~~-~------~d~~~~~~adiVVitAg~~   99 (160)
T d1i0za1          77 IVA-D------KDYSVTANSKIVVVTAGVR   99 (160)
T ss_dssp             EEE-C------SSGGGGTTCSEEEECCSCC
T ss_pred             EEe-c------cchhhcccccEEEEecCCc
Confidence            211 1      1234578999999887654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.01  E-value=0.00065  Score=54.92  Aligned_cols=75  Identities=23%  Similarity=0.340  Sum_probs=50.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh----CCCceEEE
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI----NSTVHIIE  167 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l----np~v~i~~  167 (340)
                      .+||.|||+|.+|+.+|..|+..|. .+|.|+|-+                   +.|++..+.-|...    +....+..
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~-------------------~~~~~g~~~Dl~~a~~~~~~~~~~~~   61 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN-------------------EAKVKADQIDFQDAMANLEAHGNIVI   61 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHGGGSSSCCEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc-------------------cchhhhHHHhhhccccccCCccceec
Confidence            3789999999999999999999985 689998743                   23444444444433    22233321


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                        .      ..+.++++|+||.+...+
T Consensus        62 --~------d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1          62 --N------DWAALADADVVISTLGNI   80 (146)
T ss_dssp             --S------CGGGGTTCSEEEECCSCG
T ss_pred             --c------CHHHhccccEEEEecccc
Confidence              1      123468999999887643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.00059  Score=56.53  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ...+|+|+|+|++|..++..+...|..++.++|.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccc
Confidence            46889999999999999999999999999998853

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.93  E-value=0.0025  Score=51.55  Aligned_cols=79  Identities=18%  Similarity=0.055  Sum_probs=51.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      ||.|||+|-+|+.+|+.|.+.|. +++.+|.+.                   .+    .+..++...--..         
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~-------------------~~----~~~a~~~~~~~~~---------   48 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------ST----CEKAVERQLVDEA---------   48 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HH----HHHHHHTTSCSEE---------
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCc-------------------hH----HHHHHHhhcccee---------
Confidence            69999999999999999999996 566666432                   11    1122232211000         


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHH
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVV  206 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~  206 (340)
                      .+..+.++++|+||.|+........+++....
T Consensus        49 ~~~~~~~~~~DiIilavp~~~~~~vl~~l~~~   80 (165)
T d2f1ka2          49 GQDLSLLQTAKIIFLCTPIQLILPTLEKLIPH   80 (165)
T ss_dssp             ESCGGGGTTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             eeecccccccccccccCcHhhhhhhhhhhhhh
Confidence            11134578899999999765666667766543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.93  E-value=0.0016  Score=53.65  Aligned_cols=92  Identities=16%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+                   ..|.+.++    ++--+-.|+....+
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~-------------------~~kl~~a~----~lGa~~~i~~~~~d   83 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH-------------------KDKFPKAI----ELGATECLNPKDYD   83 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC-------------------GGGHHHHH----HTTCSEEECGGGCS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCCh-------------------HHHHHHHH----HcCCcEEEcCCCch
Confidence            45679999999999999999999999999998753                   23444442    33322222221111


Q ss_pred             CCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHH
Q 019513          172 LRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVV  206 (340)
Q Consensus       172 ~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~  206 (340)
                      ...+......  ..+|+||+++.+..+.......++.
T Consensus        84 ~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~  120 (174)
T d1p0fa2          84 KPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC  120 (174)
T ss_dssp             SCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT
T ss_pred             hHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH
Confidence            1111111111  4699999999987765544444433

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.91  E-value=0.00044  Score=55.59  Aligned_cols=75  Identities=21%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh----hCCCceEEEec
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS----INSTVHIIEHR  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~----lnp~v~i~~~~  169 (340)
                      +||.|||+|.+|+.+|..|+..++..+.++|.+.                   .|++..+.-+..    .....++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~-------------------~~~~~~~~Dl~~~~~~~~~~~~i~~~-   61 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE-------------------GVPQGKALDLYEASPIEGFDVRVTGT-   61 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc-------------------ccchhHHHHhhccccccCCCCEEEec-
Confidence            5899999999999999999999998899887432                   234443333322    1223333322 


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                            +..+.+++.|+||.+...+
T Consensus        62 ------~d~~~~~~advvvitag~~   80 (142)
T d1uxja1          62 ------NNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             ------SCGGGGTTCSEEEECCSCC
T ss_pred             ------CcHHHhcCCCEEEEeeecc
Confidence                  1233467899999888654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.87  E-value=0.0023  Score=51.43  Aligned_cols=77  Identities=21%  Similarity=0.328  Sum_probs=53.4

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh----CCCceEEEe
Q 019513           95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI----NSTVHIIEH  168 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l----np~v~i~~~  168 (340)
                      ||.|||+ |.+|+.+|..|+..|+ ++|.|+|.+                 -+..|++..+.-|...    .+.+++...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~-----------------~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~   64 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE-----------------HSINKLEGLREDIYDALAGTRSDANIYVE   64 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG-----------------GGHHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch-----------------hhhHhhhcccccchhcccccccCCccccC
Confidence            6999996 9999999999999995 899999853                 2234666666666653    233444333


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC
Q 019513          169 REALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      ..     +..+.++++|+||.+...
T Consensus        65 ~~-----~d~~~l~~aDvVVitAG~   84 (145)
T d1hyea1          65 SD-----ENLRIIDESDVVIITSGV   84 (145)
T ss_dssp             ET-----TCGGGGTTCSEEEECCSC
T ss_pred             Cc-----chHHHhccceEEEEeccc
Confidence            21     123457889999988654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.81  E-value=0.0017  Score=51.77  Aligned_cols=73  Identities=19%  Similarity=0.149  Sum_probs=48.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH----hhCCCceEEEec
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR----SINSTVHIIEHR  169 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~----~lnp~v~i~~~~  169 (340)
                      ||.|||+|.+|+.++..|+..|. .+|.|+|-+.                   .|++..+..+.    ..+...++....
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~-------------------~~~~~~~~d~~~~~~~~~~~~~i~~~~   62 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE-------------------GIPQGKALDMYESGPVGLFDTKVTGSN   62 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCEEEEES
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc-------------------ccchhhhhhhhcccchhcccceEEecC
Confidence            69999999999999999999995 6899998432                   23333332222    223445553322


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                             ..+.++++|+||.+...
T Consensus        63 -------~~~~~~dadvvvitag~   79 (142)
T d1guza1          63 -------DYADTANSDIVIITAGL   79 (142)
T ss_dssp             -------CGGGGTTCSEEEECCSC
T ss_pred             -------CHHHhcCCeEEEEEEec
Confidence                   23446899999988754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.80  E-value=0.00076  Score=56.73  Aligned_cols=94  Identities=15%  Similarity=0.167  Sum_probs=61.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh--hC----CCceEEE
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS--IN----STVHIIE  167 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~--ln----p~v~i~~  167 (340)
                      +||+|+|+|..|+.+|..|+..|- +++|++.|.=.                       .+.|++  .|    |.+++  
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~-----------------------~~~i~~~~~n~~yl~~~~l--   61 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEE-----------------------VRLVNEKRENVLFLKGVQL--   61 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHH-----------------------HHHHHHHTBCTTTSTTCBC--
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHH-----------------------HHHHhhccccccccccccc--
Confidence            579999999999999999999984 68887654311                       112221  11    22221  


Q ss_pred             ecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHH-------HHHcCCcEEEE
Q 019513          168 HREALR-TSNALEILSQYEIVVDATDNAPSRYMISDC-------CVVLGKPLVSG  214 (340)
Q Consensus       168 ~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~-------~~~~~~p~i~~  214 (340)
                       +..+. ..+..+.++++|+||.|+-+...|..+.+.       ....+.|+|++
T Consensus        62 -~~~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~  115 (189)
T d1n1ea2          62 -ASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVC  115 (189)
T ss_dssp             -CTTEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEEC
T ss_pred             -ccccccchhhhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEE
Confidence             11111 245667788999999999877777666543       34578888875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.77  E-value=0.0017  Score=52.41  Aligned_cols=77  Identities=21%  Similarity=0.246  Sum_probs=51.5

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC----CceE
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHI  165 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp----~v~i  165 (340)
                      -.++||.|||+|.+|+.+|..|+..|. .+|.|+|-+.                   .|++..+.-|....+    .+.+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~-------------------~~~~g~a~Dl~~~~~~~~~~~~~   64 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE-------------------SKAIGDAMDFNHGKVFAPKPVDI   64 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHTTSSSSCCEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc-------------------ccccchhccHhhCccccCCCeEE
Confidence            346789999999999999999999996 5799998432                   334444444554322    2222


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .  .      +..+.++++|+||.+...+
T Consensus        65 ~--~------~d~~~l~daDvvvitag~~   85 (148)
T d1ldna1          65 W--H------GDYDDCRDADLVVICAGAN   85 (148)
T ss_dssp             E--E------CCGGGTTTCSEEEECCSCC
T ss_pred             E--E------CCHHHhccceeEEEecccc
Confidence            1  1      1134578899999876553

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.72  E-value=0.0028  Score=51.42  Aligned_cols=123  Identities=20%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ++|.|||+|-+|+.+|++|++.|. ++.++|.+.-....+.        ..|........+.++.  .++-+........
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~--------~~~~~~~~~~~e~~~~--~diii~~v~~~~~   70 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLV--------AAGASAARSARDAVQG--ADVVISMLPASQH   70 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHH--------HTTCEECSSHHHHHTS--CSEEEECCSCHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhh--------hhhccccchhhhhccc--cCeeeecccchhh
Confidence            469999999999999999999996 6778775432111111        0111111122222221  1121221111100


Q ss_pred             -------cccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecC-----ceeEEEEEe
Q 019513          174 -------TSNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALG-----LEGQLTVYN  227 (340)
Q Consensus       174 -------~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g-----~~G~i~v~~  227 (340)
                             .......+.+=++|||++.. +..-..+.+.+.+.++.++++...|     ..|.+.++.
T Consensus        71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~  137 (162)
T d3cuma2          71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMV  137 (162)
T ss_dssp             HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEE
T ss_pred             HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEe
Confidence                   01122334455788888766 4456678888999999999877665     245555543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.71  E-value=0.00099  Score=54.82  Aligned_cols=34  Identities=38%  Similarity=0.509  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|..++.++|.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            4678999999999999999999999999998874

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.70  E-value=0.0032  Score=49.48  Aligned_cols=71  Identities=21%  Similarity=0.245  Sum_probs=51.3

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ||+|+|+ |-.|..++..+...|..-+..+|.+.                                              
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------------------------------------   35 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------------------------------------   35 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------------------------------------
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------------------------------------
Confidence            6999997 88999999988877654333333211                                              


Q ss_pred             cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                          .+.+.++|+|||-|- +..-...-++|.++++|+|.+.+
T Consensus        36 ----~~~~~~~DVvIDFS~-p~~~~~~l~~~~~~~~p~ViGTT   73 (128)
T d1vm6a3          36 ----VEELDSPDVVIDFSS-PEALPKTVDLCKKYRAGLVLGTT   73 (128)
T ss_dssp             ----EEECSCCSEEEECSC-GGGHHHHHHHHHHHTCEEEECCC
T ss_pred             ----HHHhccCCEEEEecC-HHHHHHHHHHHHhcCCCEEEEcC
Confidence                112456899999876 56666677789999999998654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.68  E-value=0.007  Score=48.87  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=28.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D  126 (340)
                      ++|+|||+|-+|+.+|+.|...|.. +|..+|.+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            3699999999999999999999974 67777754

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.0041  Score=49.49  Aligned_cols=72  Identities=19%  Similarity=0.298  Sum_probs=48.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh---hCCCceEEEecc
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS---INSTVHIIEHRE  170 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~---lnp~v~i~~~~~  170 (340)
                      ||.|||+|.+|+.+|..|+..|. .+|.|+|-+                   +.|++..+.-+..   ..+.+.+..   
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~~~Dl~~~~~~~~~~~~~~---   59 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD-------------------KKRAEGDALDLIHGTPFTRRANIYA---   59 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHGGGSCCCEEEE---
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc-------------------cccccchhccccccccccccccccC---
Confidence            79999999999999999999987 579998843                   2233333333333   333443321   


Q ss_pred             cCCcccHHhhcccCcEEEEcCCC
Q 019513          171 ALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                          .+ .+.++++|+||.+...
T Consensus        60 ----~~-~~~~~~adivvitag~   77 (140)
T d1a5za1          60 ----GD-YADLKGSDVVIVAAGV   77 (140)
T ss_dssp             ----CC-GGGGTTCSEEEECCCC
T ss_pred             ----Cc-HHHhcCCCEEEEeccc
Confidence                11 2347899999988755

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.66  E-value=0.0044  Score=50.99  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+|+|+|+|++|...+..+...|..++.++|.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            34789999999999999999999999999998754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.65  E-value=0.0054  Score=49.06  Aligned_cols=75  Identities=24%  Similarity=0.321  Sum_probs=50.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh---hCCCceEEEec
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS---INSTVHIIEHR  169 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~---lnp~v~i~~~~  169 (340)
                      .||.|||+|.+|+.+|..|+..|+ .+|.|+|-+                   ..|++.-+.-|+.   ..+...+....
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~-------------------~~~~~g~a~Dl~~a~~~~~~~~i~~~~   62 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA-------------------KERVEAEVLDMQHGSSFYPTVSIDGSD   62 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHHTGGGSTTCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec-------------------cccchhHHHHHHhccccCCCceeecCC
Confidence            589999999999999999999997 579998733                   2344443333443   33333332211


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCCh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                            + .+.++++|+||.+...+
T Consensus        63 ------~-~~~~~daDvVVitaG~~   80 (143)
T d1llda1          63 ------D-PEICRDADMVVITAGPR   80 (143)
T ss_dssp             ------C-GGGGTTCSEEEECCCCC
T ss_pred             ------C-HHHhhCCcEEEEecccc
Confidence                  1 23467899999887654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.65  E-value=0.0021  Score=53.29  Aligned_cols=97  Identities=13%  Similarity=0.114  Sum_probs=57.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--CCCceEEEeccc-
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHIIEHREA-  171 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--np~v~i~~~~~~-  171 (340)
                      +|.|+|+|..|+.+|..|+..|. .+.|+..+.                     -+...+.+++.  ||.......... 
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~---------------------~~~~~~~i~~~~~~~~~~~~~~~~~i   59 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEF---------------------DTEILKSISAGREHPRLGVKLNGVEI   59 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGG---------------------GHHHHHHHHTTCCBTTTTBCCCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecc---------------------cHHHHHHHhhhhhhhhhcchhccccc
Confidence            79999999999999999999984 577763211                     01111122211  121111111111 


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEE
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVS  213 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~  213 (340)
                      ....+..+.++++|+||.|+-....+..+.+.... .+.++|.
T Consensus        60 ~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~  102 (180)
T d1txga2          60 FWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVL  102 (180)
T ss_dssp             ECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEE
T ss_pred             cccccHHHHHhccchhhcccchhhhHHHHHhhccccccceecc
Confidence            11345567788999999999887777777765433 2344554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.63  E-value=0.0027  Score=52.90  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=58.5

Q ss_pred             HHcccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           88 QSNLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        88 q~~L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      ...|++++|+|.| .||+|.++++.|+..|. ++.++|.+.                   .|.+.+++.+.+.. .+.+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~   76 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL-------------------DKAQAAADSVNKRF-KVNVT   76 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHH-TCCCE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch-------------------HHHHHHHHHHHhcc-chhhh
Confidence            4578999999999 57899999999999995 688887442                   35666666666542 22222


Q ss_pred             EecccCC-cccHHhhcccCcEEEEcCC
Q 019513          167 EHREALR-TSNALEILSQYEIVVDATD  192 (340)
Q Consensus       167 ~~~~~~~-~~~~~~~l~~~DlVi~~tD  192 (340)
                      ..  .+. .+...+.+.+.|+||.++.
T Consensus        77 ~~--d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          77 AA--ETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             EE--ECCSHHHHHHHTTTCSEEEECCC
T ss_pred             hh--hcccHHHHHHHhcCcCeeeecCc
Confidence            22  222 3456777899999998865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.60  E-value=0.00098  Score=54.75  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=32.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..+||+|||+|..|..+|.+|++.|...++|+|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            36899999999999999999999999889999854

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.55  E-value=0.0015  Score=54.57  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|.+++|.|+|.|.+|..+++.|...|+ ++..+|.+
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~   74 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRT   74 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cccCceEEEeccccccccceeeeecccc-cccccccc
Confidence            4889999999999999999999999998 68888764

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0013  Score=63.91  Aligned_cols=48  Identities=13%  Similarity=0.199  Sum_probs=42.9

Q ss_pred             CCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEe
Q 019513          253 SGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI  301 (340)
Q Consensus       253 ~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l  301 (340)
                      ++.+.|+++++|+++|+|+||++|+...|+.+ .++||+...+..++++
T Consensus       482 ~~el~~vaA~~GGiaaQEviK~iT~qy~Pi~n-~~i~dgi~~~~~~~~l  529 (529)
T d1yova1         482 AAEPHTIAAFLGGAAAQEVIKIITKQFVIFNN-TYIYSGMSQTSATFQL  529 (529)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTCSBCCSS-EEEEETTTTEEEEECC
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHhcCeeccCC-cEEEecCCCeeeeEeC
Confidence            56788999999999999999999999999866 8899999998877754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0021  Score=53.57  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=57.9

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcc----cHHHHHHHHHhhCCCceE
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQS----KVKSAAATCRSINSTVHI  165 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~----Ka~~a~~~L~~lnp~v~i  165 (340)
                      .-+.++|+|||+|..|-++|.+|++.|. +++|+|.+..-    .=|+.+...--++.    -.+...+.+++.+  +++
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~----GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g--V~i  112 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEI----GGQFNIAKQIPGKEEFYETLRYYRRMIEVTG--VTL  112 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSS----CTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT--CEE
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCcc----CceEEEEEeCcccchHHHHHHHHHHhhhcCC--eEE
Confidence            3456899999999999999999999995 79999875432    21211110001221    2334445555543  554


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCCChh
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      . .+..++.+    ...+||.||.++...+
T Consensus       113 ~-l~~~Vt~~----~~~~~d~vilAtG~~~  137 (179)
T d1ps9a3         113 K-LNHTVTAD----QLQAFDETILASGIPN  137 (179)
T ss_dssp             E-ESCCCCSS----SSCCSSEEEECCCEEC
T ss_pred             E-eCCEEccc----ccccceeEEEeecCCC
Confidence            3 23344432    3568999999998643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0013  Score=50.64  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++|+|||.|.+|+++|..|++.|. +++|++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            689999999999999999999996 79999854

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.49  E-value=0.0068  Score=49.41  Aligned_cols=92  Identities=18%  Similarity=0.244  Sum_probs=55.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +.+|+|+|+||+|..++..+...|..++..+|.+                   ..|.+.++    ++.-.-.+...+..-
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~-------------------~~k~~~a~----~~Ga~~~i~~~~~~~   85 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN-------------------KDKFAKAK----EVGATECVNPQDYKK   85 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC-------------------GGGHHHHH----HTTCSEEECGGGCSS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCc-------------------HHHHHHHH----HhCCeeEEecCCchh
Confidence            4689999999999999999999999999998743                   33444332    222121121111111


Q ss_pred             CcccHHhh--cccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513          173 RTSNALEI--LSQYEIVVDATDNAPSRYMISDCCVVL  207 (340)
Q Consensus       173 ~~~~~~~~--l~~~DlVi~~tD~~~~r~~i~~~~~~~  207 (340)
                      ........  -.++|+||+++....+.......++..
T Consensus        86 ~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~  122 (176)
T d2jhfa2          86 PIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA  122 (176)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT
T ss_pred             HHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcC
Confidence            11111111  146999999999877655444444443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.48  E-value=0.0054  Score=51.78  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D  126 (340)
                      -||+|||+|..|..+|.+|+++|.+ +++|+|..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3899999999999999999999876 79999855

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.47  E-value=0.007  Score=48.25  Aligned_cols=73  Identities=19%  Similarity=0.209  Sum_probs=48.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh----hCCCceEEEec
Q 019513           95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS----INSTVHIIEHR  169 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~----lnp~v~i~~~~  169 (340)
                      ||.|||+|.+|+.+|..|+..|. .+|.|+|-+                   ..|++.-+.-|+.    .....++....
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~-------------------~~~~~g~alDl~~~~~~~~~~~~i~~~~   62 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA-------------------EDLAVGEAMDLAHAAAGIDKYPKIVGGA   62 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS-------------------HHHHHHHHHHHHHHHHTTTCCCEEEEES
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc-------------------cchhhHHHHHHhhhccccCCCCccccCC
Confidence            79999999999999999998886 789998732                   2344433333433    22233443322


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCC
Q 019513          170 EALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                             ..+.++++|+||.+...
T Consensus        63 -------d~~~~~~adiVvitag~   79 (142)
T d1ojua1          63 -------DYSLLKGSEIIVVTAGL   79 (142)
T ss_dssp             -------CGGGGTTCSEEEECCCC
T ss_pred             -------CHHHhccccEEEEeccc
Confidence                   13457889999987764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.44  E-value=0.0067  Score=52.98  Aligned_cols=83  Identities=18%  Similarity=0.336  Sum_probs=62.8

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ||+++.++|-|++ |+|..+|+.|+..|. ++.+.|.+                   ..|.+.+.+.+.+..+..++..+
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~~~~~~~~~~~~~~   60 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVS-------------------SEGLEASKAAVLETAPDAEVLTT   60 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence            6899999999865 699999999999996 58887743                   24677788888888888888888


Q ss_pred             cccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          169 REALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      ..+++..+ .       .+.+...|++|.+..
T Consensus        61 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          61 VADVSDEAQVEAYVTATTERFGRIDGFFNNAG   92 (258)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             eccCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            77776532 2       233467899988653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.014  Score=48.43  Aligned_cols=98  Identities=14%  Similarity=0.143  Sum_probs=60.7

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .-+||+|.|+ |.+|+.+++.|...|. ++++++.+.-....           .              ..+.+++  ...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~-----------~--------------~~~~~~~--~~g   53 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPS-----------E--------------GPRPAHV--VVG   53 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCS-----------S--------------SCCCSEE--EES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccc-----------c--------------ccccccc--ccc
Confidence            4578999996 6799999999999995 68888654321100           0              0123443  333


Q ss_pred             cCC-cccHHhhcccCcEEEEcCCChh----------hHHHHHHHHHHcCCc-EEEEeec
Q 019513          171 ALR-TSNALEILSQYEIVVDATDNAP----------SRYMISDCCVVLGKP-LVSGAAL  217 (340)
Q Consensus       171 ~~~-~~~~~~~l~~~DlVi~~tD~~~----------~r~~i~~~~~~~~~p-~i~~~~~  217 (340)
                      +++ .+...+.++++|+||.+.....          .-..+-+++.+++++ +|..++.
T Consensus        54 D~~d~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~  112 (205)
T d1hdoa_          54 DVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (205)
T ss_dssp             CTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             cccchhhHHHHhcCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeee
Confidence            444 3445667889999998875321          112345567777775 5554443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.25  E-value=0.0041  Score=52.71  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=33.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .|++++|+|.|.|.+|..+|++|...| .++.+.|.|.
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecchH
Confidence            589999999999999999999999999 6688888764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.25  E-value=0.0076  Score=48.82  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+|+|+|+||+|..++..+..+|...+..+|.+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            35679999999999999999999999999887743

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.20  E-value=0.013  Score=46.69  Aligned_cols=75  Identities=20%  Similarity=0.228  Sum_probs=49.8

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh---hCCCceEEEe
Q 019513           94 SSILVIG-AGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS---INSTVHIIEH  168 (340)
Q Consensus        94 ~~VlVvG-~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~---lnp~v~i~~~  168 (340)
                      +||.||| +|.+|+.+|..|+..|+. +|.|+|-+.                 .+.+++..+.-|..   ..+.+++...
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~-----------------~~~~~~g~a~Dl~~~~~~~~~~~i~~~   63 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD-----------------KEDDTVGQAADTNHGIAYDSNTRVRQG   63 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG-----------------GHHHHHHHHHHHHHHHTTTCCCEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC-----------------cccccceeecchhhcccccCCceEeeC
Confidence            5899999 699999999999999875 699987422                 12344444444543   3444444322


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCC
Q 019513          169 REALRTSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~  193 (340)
                      +        .+.+.++|+||.+...
T Consensus        64 ~--------~~~~~~aDiVvitaG~   80 (142)
T d1o6za1          64 G--------YEDTAGSDVVVITAGI   80 (142)
T ss_dssp             C--------GGGGTTCSEEEECCCC
T ss_pred             C--------HHHhhhcCEEEEeccc
Confidence            1        1235789999988764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.14  E-value=0.0078  Score=48.02  Aligned_cols=87  Identities=15%  Similarity=0.075  Sum_probs=51.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      ||.|||+|-+|+.+|++|...|.. +.++|.+                   ..+...  ..-....  +  .        
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~-v~~~~~~-------------------~~~~~~--~~~~~~~--~--~--------   47 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE-VVTSLEG-------------------RSPSTI--ERARTVG--V--T--------   47 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE-EEECCTT-------------------CCHHHH--HHHHHHT--C--E--------
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe-EEEEcCc-------------------hhHHHH--Hhhhccc--c--c--------
Confidence            699999999999999999999863 4444321                   112211  1111222  1  0        


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      +...+.++.+|+||.|+........+.......+.-+|+.+
T Consensus        48 ~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~~~~~id~s   88 (152)
T d1i36a2          48 ETSEEDVYSCPVVISAVTPGVALGAARRAGRHVRGIYVDIN   88 (152)
T ss_dssp             ECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCCSEEEECS
T ss_pred             ccHHHHHhhcCeEEEEecCchHHHHHHhhcccCCceeeccC
Confidence            12345677899999888765554445444444444455543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.10  E-value=0.0067  Score=48.36  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D  126 (340)
                      .||.|||+|.+|+.+|..|+..|. .+|.|+|-+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            589999999999999999999987 569999844

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.05  E-value=0.011  Score=48.24  Aligned_cols=124  Identities=12%  Similarity=0.122  Sum_probs=62.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc--
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA--  171 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~--  171 (340)
                      -+|.|||+|-.|+++|++|+..|.. +.++|.+.-....+..........-....+......+........+......  
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA   80 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcc
Confidence            3699999999999999999999965 6777754322111111110000000000001111122222211111111100  


Q ss_pred             CCc---ccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecC
Q 019513          172 LRT---SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALG  218 (340)
Q Consensus       172 ~~~---~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g  218 (340)
                      ...   ......+..-+++++++.. +..-..+.+.+...++-++++...|
T Consensus        81 ~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          81 ATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             hhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            000   1223344556677777655 4445567777778888888876554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.04  E-value=0.014  Score=46.25  Aligned_cols=34  Identities=32%  Similarity=0.530  Sum_probs=29.5

Q ss_pred             cCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .-++|+||| +|-+|..+|++|.+.|. .+.++|.+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~   42 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   42 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccc
Confidence            346999999 89999999999999997 58888754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.95  E-value=0.0046  Score=52.08  Aligned_cols=35  Identities=29%  Similarity=0.514  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      .++|+|||+|-.|..+|..|++.|. +++|+|.+.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4689999999999999999999998 6999998765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.91  E-value=0.013  Score=43.45  Aligned_cols=88  Identities=17%  Similarity=0.134  Sum_probs=56.6

Q ss_pred             cCCcEEEEcCChhH-HHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLG-SPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglG-s~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.++|.++|.||.| +.+|+.|...|. +++--|..                   .+   ...+.|.+..  +++.... 
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~-------------------~~---~~~~~L~~~G--i~v~~g~-   60 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIA-------------------DG---VVTQRLAQAG--AKIYIGH-   60 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESC-------------------CS---HHHHHHHHTT--CEEEESC-
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCC-------------------CC---hhhhHHHHCC--CeEEECC-
Confidence            46789999999999 778999999996 46655521                   11   2234555543  4443211 


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                        .+    +.+.+.|+||..+.-+..-..+. +|++.|+|+|
T Consensus        61 --~~----~~i~~~d~vV~S~AI~~~npel~-~A~~~gipii   95 (96)
T d1p3da1          61 --AE----EHIEGASVVVVSSAIKDDNPELV-TSKQKRIPVI   95 (96)
T ss_dssp             --CG----GGGTTCSEEEECTTSCTTCHHHH-HHHHTTCCEE
T ss_pred             --cc----ccCCCCCEEEECCCcCCCCHHHH-HHHHcCCCEE
Confidence              11    23467899997766444444433 5889999987

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.91  E-value=0.011  Score=47.96  Aligned_cols=35  Identities=29%  Similarity=0.382  Sum_probs=30.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|..
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            45679999999999999999999999999998743

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.90  E-value=0.0033  Score=55.23  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=32.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      .+|+|||+|.+|+.+|.+|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999899999987543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.86  E-value=0.0032  Score=51.40  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            35789999999999999999999999999988754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.058  Score=42.53  Aligned_cols=91  Identities=12%  Similarity=0.120  Sum_probs=58.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .-||+|+|.|.+|..+++.|...|. .+.+||.|.-                   +.....+.+.  ...+.+  +....
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~-------------------~~~~~~~~~~--~~~~~v--i~Gd~   58 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE-------------------DDIKQLEQRL--GDNADV--IPGDS   58 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH-------------------HHHHHHHHHH--CTTCEE--EESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccch-------------------hHHHHHHHhh--cCCcEE--EEccC
Confidence            4589999999999999999999996 5788886531                   1111222222  233433  33333


Q ss_pred             CcccHH--hhcccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513          173 RTSNAL--EILSQYEIVVDATDNAPSRYMISDCCVVL  207 (340)
Q Consensus       173 ~~~~~~--~~l~~~DlVi~~tD~~~~r~~i~~~~~~~  207 (340)
                      +..+..  .-++++|.||.++++...-..+...+++.
T Consensus        59 ~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~   95 (153)
T d1id1a_          59 NDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             TSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhccccCCEEEEccccHHHHHHHHHHHHHh
Confidence            333222  23578999999999877766666666664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.81  E-value=0.012  Score=51.67  Aligned_cols=82  Identities=12%  Similarity=0.312  Sum_probs=58.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v~i~~  167 (340)
                      ||+++.++|.|+ +|+|..+|+.|+..|. ++.++|.+                   ..|.+.+++.+++.. +..++..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS-------------------SERLEETRQIILKSGVSEKQVNS   61 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCCceEE
Confidence            689999999985 5699999999999996 68888743                   235667777777664 3455667


Q ss_pred             ecccCCccc-H-------HhhcccCcEEEEcC
Q 019513          168 HREALRTSN-A-------LEILSQYEIVVDAT  191 (340)
Q Consensus       168 ~~~~~~~~~-~-------~~~l~~~DlVi~~t  191 (340)
                      +..+++..+ .       .+.+...|++|.+.
T Consensus        62 ~~~Dvs~~~~v~~~~~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          62 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCceEEEeCC
Confidence            766666432 1       22235688888764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.79  E-value=0.004  Score=51.28  Aligned_cols=32  Identities=31%  Similarity=0.479  Sum_probs=29.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+|||+|..|..+|..|++.|+.+++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.78  E-value=0.0025  Score=51.63  Aligned_cols=31  Identities=29%  Similarity=0.434  Sum_probs=26.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ||.|||+|-+|+.+|++|+.+|.. +.++|.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            699999999999999999999964 6777643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.78  E-value=0.013  Score=50.95  Aligned_cols=82  Identities=17%  Similarity=0.280  Sum_probs=57.5

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      +||+++.++|-|+ +|+|.++|+.|++.|. ++.++|.+                   ..+.+.+++.+++.+.  ++..
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g~--~~~~   58 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMN-------------------REALEKAEASVREKGV--EARS   58 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTS--CEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            4799999999986 5699999999999996 58887743                   2356677777776654  4555


Q ss_pred             ecccCCccc--------HHhhcccCcEEEEcCC
Q 019513          168 HREALRTSN--------ALEILSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~~--------~~~~l~~~DlVi~~tD  192 (340)
                      +..+++.++        ..+.+...|++|.+..
T Consensus        59 ~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG   91 (260)
T d1zema1          59 YVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAG   91 (260)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCCCeehhhhc
Confidence            666665422        1223356888887653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.76  E-value=0.0056  Score=47.35  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=38.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI  159 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l  159 (340)
                      ++|+|||+|.+|+++|..|.+.|. +++|+..+.+     -|.+       ...=++.+.+.+++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~~-----l~~~-------D~~~~~~l~~~l~~~   73 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSIL-----LRGF-------DQDMANKIGEHMEEH   73 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSS-----STTS-------CHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEechh-----hccC-------CHHHHHHHHHHHHHC
Confidence            589999999999999999999996 6999876532     2221       122245666677765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.75  E-value=0.017  Score=48.99  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=56.9

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc-cccc-CCccccccCCCccCcccH--HHHHHHHHhhCCCceE
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV-VELN-NMHRQVIHTEPYIGQSKV--KSAAATCRSINSTVHI  165 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~-Ve~s-NL~Rq~l~~~~diG~~Ka--~~a~~~L~~lnp~v~i  165 (340)
                      .-..++|+|||+|..|-.+|..|++.|. .++|+|... +.-. +..... ....+....+.  ..-...+...+..+.+
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~~GG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEKIGGHLNQVAAL-PGLGEWSYHRDYRETQITKLLKKNKESQL  123 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTHHHHTTS-TTCGGGGHHHHHHHHHHHHHHTTCTTCEE
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccccCCcccccccc-ceeecccccchhHHHHHHHHhhcceeeee
Confidence            3467899999999999999999999996 599988433 3211 111111 11112222111  1112223334444444


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCCChhhHH
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATDNAPSRY  198 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~  198 (340)
                      .......+.+...  -..||.||.+|.......
T Consensus       124 ~~~~~~~~~~~~~--~~~~d~vviAtG~~~~~~  154 (233)
T d1djqa3         124 ALGQKPMTADDVL--QYGADKVIIATGASECTL  154 (233)
T ss_dssp             ECSCCCCCHHHHH--TSCCSEEEECCCEECCHH
T ss_pred             ecccccccchhhh--hhccceeeeccCCCcccc
Confidence            4333222222111  237999999998755443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.74  E-value=0.0045  Score=49.51  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=27.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|.+||+|-+|..+++.|..+|-.++.+.|.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r   32 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeC
Confidence            6999999999999999999999777777653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.69  E-value=0.014  Score=51.13  Aligned_cols=83  Identities=14%  Similarity=0.306  Sum_probs=59.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC-CceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS-TVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp-~v~i~~  167 (340)
                      ||++++++|-|+ +|+|..+|+.|+..|. ++.+.|.+                   ..|.+.+++.+.+... ..++..
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~~~~~~~~~~   60 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN-------------------EDRLEETKQQILKAGVPAEKINA   60 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcCCCCcceEE
Confidence            688999999986 4699999999999996 58887643                   3466777777777653 346777


Q ss_pred             ecccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          168 HREALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      +..+++..+ .       .+.+...|++|.+..
T Consensus        61 ~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG   93 (274)
T d1xhla_          61 VVADVTEASGQDDIINTTLAKFGKIDILVNNAG   93 (274)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeeCCCHHHHHHHHHHHHHHcCCceEEEeecc
Confidence            777776532 1       222346788887643

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.68  E-value=0.028  Score=47.66  Aligned_cols=111  Identities=15%  Similarity=0.239  Sum_probs=69.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCccc--cccCCC---ccCc-ccHHHHHHHHHhhCCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRQ--VIHTEP---YIGQ-SKVKSAAATCRSINSTV  163 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~Rq--~l~~~~---diG~-~Ka~~a~~~L~~lnp~v  163 (340)
                      .+.+|.|||+||.|+.++..|.+.|+.  ++..+|.|.-..++..-+  ++....   ..|- .+.+..++...+-    
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~----   89 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKES----   89 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHT----
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHH----
Confidence            348999999999999999999999986  456778887655544211  111111   1111 2233333332221    


Q ss_pred             eEEEecccCCcccHHhhcccCcEEEEcCCCh-----hhHHHHHHHHHHcCCcEEEEee
Q 019513          164 HIIEHREALRTSNALEILSQYEIVVDATDNA-----PSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       164 ~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~-----~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                                .+...+.++++|+||.+..--     ..-..+.+.+++.+++.+...+
T Consensus        90 ----------~~~I~~~l~~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv~ivt  137 (209)
T d2vapa1          90 ----------AEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVT  137 (209)
T ss_dssp             ----------HHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ----------HHHHHHhccCCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEEEEEe
Confidence                      123455678899888775431     1344689999999998887544

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.019  Score=46.67  Aligned_cols=97  Identities=18%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      -||+|+|+ |-+|..+++.+... ++.=...+|...  ..++       ..|+|..-        ...++.+.+.     
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~--~~~~-------g~d~~~~~--------~~~~~~~~~~-----   62 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG--SSLL-------GSDAGELA--------GAGKTGVTVQ-----   62 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT--CTTC-------SCCTTCSS--------SSSCCSCCEE-----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEeccc--chhc-------cchhhhhh--------ccccCCceee-----
Confidence            36999997 77999999988775 322222333211  0011       11222200        0001112221     


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                         .+....+..+|+|||-+. +..-...-++|.++++|+|.+.+
T Consensus        63 ---~~~~~~~~~~DViIDFs~-p~~~~~~~~~a~~~~~~~ViGTT  103 (162)
T d1diha1          63 ---SSLDAVKDDFDVFIDFTR-PEGTLNHLAFCRQHGKGMVIGTT  103 (162)
T ss_dssp             ---SCSTTTTTSCSEEEECSC-HHHHHHHHHHHHHTTCEEEECCC
T ss_pred             ---ccHHHHhcccceEEEecc-HHHHHHHHHHHHhccceeEEecC
Confidence               223445678999999876 56666667899999999998753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.54  E-value=0.036  Score=47.97  Aligned_cols=84  Identities=19%  Similarity=0.279  Sum_probs=58.6

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|+++.|+|.|++ |+|.++|+.|++.|..-+.+.+.+.                    +. .....+...++...+..+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~--------------------~~-~~~~~~~~~~~~~~~~~~   60 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE--------------------NP-TALAELKAINPKVNITFH   60 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC--------------------CH-HHHHHHHHHCTTSEEEEE
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc--------------------cH-HHHHHHHhhCCCCCEEEE
Confidence            4789999999865 7999999999999987666655321                    11 233567778888888877


Q ss_pred             cccCC-cc-cH-------HhhcccCcEEEEcCCCh
Q 019513          169 REALR-TS-NA-------LEILSQYEIVVDATDNA  194 (340)
Q Consensus       169 ~~~~~-~~-~~-------~~~l~~~DlVi~~tD~~  194 (340)
                      ...++ +. ..       .+.+.+.|++|.+....
T Consensus        61 ~~d~~~~~~~~~~~~~~~~~~~g~iDilvnnAG~~   95 (254)
T d1sbya1          61 TYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL   95 (254)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             EeecCCCHHHHHHHHHHHHHHcCCCCEEEeCCCCC
Confidence            77765 22 12       22336789999886543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.044  Score=46.23  Aligned_cols=102  Identities=10%  Similarity=0.146  Sum_probs=64.2

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ++++++|+|.|+.| +|+++++.|...|. .++.++..+.....              ..+           .+.+++..
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~--------------~~~-----------~~~i~~~~   65 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD--------------EEA-----------YKNVNQEV   65 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC--------------SGG-----------GGGCEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhc--------------ccc-----------cceeeeee
Confidence            47889999999755 89999999999885 57888875432110              000           01233322


Q ss_pred             ecccCC-cccHHhhcccCcEEEEcCCChhh--------------HHHHHHHHHHcCCc-EEEEeecC
Q 019513          168 HREALR-TSNALEILSQYEIVVDATDNAPS--------------RYMISDCCVVLGKP-LVSGAALG  218 (340)
Q Consensus       168 ~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~--------------r~~i~~~~~~~~~p-~i~~~~~g  218 (340)
                      .  +++ .++..+.++++|+|+.|......              -..+.++|...+++ +|..++.+
T Consensus        66 ~--D~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~  130 (232)
T d2bkaa1          66 V--DFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG  130 (232)
T ss_dssp             C--CGGGGGGGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             e--cccccccccccccccccccccccccccccchhhhhhhcccccceeeecccccCccccccCCccc
Confidence            2  222 34566778899999988754211              01255778888877 66665543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.52  E-value=0.0048  Score=52.24  Aligned_cols=32  Identities=28%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|||+|||+|..|..+|..|++.|+ +++|+|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            4789999999999999999999998 6999984

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.028  Score=49.93  Aligned_cols=84  Identities=19%  Similarity=0.284  Sum_probs=59.7

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC---Cce
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVH  164 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp---~v~  164 (340)
                      -+|+++.++|.|+ +|+|.++|+.|+..|. ++.+.|.+                   ..|.+.+++.|....+   ..+
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~-------------------~~~l~~~~~el~~~~~~~~~~~   67 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK-------------------LERLKSAADELQANLPPTKQAR   67 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTSCTTCCCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhhccccCce
Confidence            3699999999986 4699999999999996 58887743                   3466677777776543   356


Q ss_pred             EEEecccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          165 IIEHREALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       165 i~~~~~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      +..+..+++..+ .       .+.+...|++|.+..
T Consensus        68 ~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          68 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGG  103 (297)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEEeccCCCHHHHHHHHHHHHHHhCCeEEEEeecc
Confidence            777777776532 2       223356899887754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.52  E-value=0.035  Score=44.57  Aligned_cols=87  Identities=16%  Similarity=0.144  Sum_probs=52.9

Q ss_pred             cEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~GglGs~-va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ||+|||+|..|.. .+..|...+--.+.++|.+.                   .+++.++    +..+...+      .+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~-------------------~~~~~~~----~~~~~~~~------~~   53 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP-------------------KVLGTLA----TRYRVSAT------CT   53 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH-------------------HHHHHHH----HHTTCCCC------CS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH-------------------HHHHHHH----Hhcccccc------cc
Confidence            7999999999976 56677666544555665332                   1223232    22221111      11


Q ss_pred             cccHHhhc-ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          174 TSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       174 ~~~~~~~l-~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                        +..+++ .+.|+|+.|+. +..++.+...|.+.|++++.
T Consensus        54 --~~~~ll~~~iD~V~I~tp-~~~H~~~~~~al~~gk~V~~   91 (167)
T d1xeaa1          54 --DYRDVLQYGVDAVMIHAA-TDVHSTLAAFFLHLGIPTFV   91 (167)
T ss_dssp             --STTGGGGGCCSEEEECSC-GGGHHHHHHHHHHTTCCEEE
T ss_pred             --cHHHhcccccceeccccc-cccccccccccccccccccc
Confidence              112233 36899998886 46777778888899999775

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.51  E-value=0.017  Score=46.54  Aligned_cols=35  Identities=34%  Similarity=0.423  Sum_probs=30.4

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+|+|+|+ |++|..++..+...|..++.++|.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccc
Confidence            3567999996 8999999999999999999998854

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.50  E-value=0.019  Score=49.93  Aligned_cols=83  Identities=13%  Similarity=0.291  Sum_probs=59.6

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCceEEE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHIIE  167 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v~i~~  167 (340)
                      ||+++.++|.|+ +|+|.++|+.|+..|. ++.+.|.+                   ..+.+.+++.|++.. +..++..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH-------------------AERLEETRQQILAAGVSEQNVNS   61 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCcCceEE
Confidence            688998999885 5799999999999996 58887743                   246677777887764 3345777


Q ss_pred             ecccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          168 HREALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       168 ~~~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      +..+++..+ .       .+.+...|++|.+..
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          62 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCCCEeecccc
Confidence            777776432 2       223356899988754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.50  E-value=0.031  Score=45.58  Aligned_cols=97  Identities=13%  Similarity=0.158  Sum_probs=56.0

Q ss_pred             cCCcEEEEcCChhHHHHHH-HHHH--c--CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           92 LKSSILVIGAGGLGSPALL-YLAA--C--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~-~La~--a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      ++-||.|||+|++|...+. .|.+  .  .+.+|.|+|-|.               +--+..++.+.......+...++.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~---------------~~~~~~~~~~~~~~~~~~~~~~~~   66 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK---------------ERQDRIAGACDVFIREKAPDIEFA   66 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH---------------HHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh---------------hHHHHHHHHHHHHHHHhCCCcceE
Confidence            4568999999999876443 2222  1  135899987543               000112344455555566666665


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCChhhH--HHHHHHHHHcCC
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDNAPSR--YMISDCCVVLGK  209 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r--~~i~~~~~~~~~  209 (340)
                      ...      +..+.++++|+||.+.......  ........++|+
T Consensus        67 ~~~------d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          67 ATT------DPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             EES------CHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             ecC------ChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence            443      3456678999999988764432  223334445554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.01  Score=49.28  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|+|+|.+|..+|+.|...|.. +..+|.+
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIE   76 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccceEEEEeecccchhhhhhhcccccce-Eeecccc
Confidence            58899999999999999999999988865 6666643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.40  E-value=0.0088  Score=50.12  Aligned_cols=86  Identities=13%  Similarity=0.077  Sum_probs=53.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|.|||+|-+|.++|..|+..|. ++..+|.|.=-..+|+....... +-+.  -+.+.+....    -....      .
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g~~p~~-e~~~--~~~l~~~~~~----~~~~~------~   67 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGKSPIV-EPGL--EALLQQGRQT----GRLSG------T   67 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSC-CTTH--HHHHHHHHHT----TCEEE------E
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcccCCccc-chhh--hhhhhhhhcc----ccccc------C
Confidence            69999999999999999999995 58899987655555554433221 1111  1112221111    11111      2


Q ss_pred             ccHHhhcccCcEEEEcCCCh
Q 019513          175 SNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .+..+.++++|+++.|.+.+
T Consensus        68 ~~~~~~i~~~d~i~i~VpTP   87 (202)
T d1mv8a2          68 TDFKKAVLDSDVSFICVGTP   87 (202)
T ss_dssp             SCHHHHHHTCSEEEECCCCC
T ss_pred             CCHHHHHhhCCEEEEecCcc
Confidence            34456678899999998775

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.35  E-value=0.009  Score=46.09  Aligned_cols=57  Identities=14%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN  160 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln  160 (340)
                      .++|+|||+|.+|.++|..|+..| .+++|++...        +++..  -.+..-++.+.+.+++.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g-~~Vtli~~~~--------~~l~~--~~~~~~~~~~~~~l~~~G   86 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAG-VHVSLVETQP--------RLMSR--AAPATLADFVARYHAAQG   86 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSS--------STTTT--TSCHHHHHHHHHHHHTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhccc-ceEEEEeecc--------ccccc--cCCHHHHHHHHHHHHHCC
Confidence            579999999999999999999999 4699988532        12211  123334556666676653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.025  Score=48.85  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +++.|+|-|+ +|+|.++|+.|+..|. ++.++|.+                   ..|.+.+++.+.+..+..++..+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   61 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWN-------------------LEAGVQCKAALHEQFEPQKTLFIQC   61 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHTTTSCGGGEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            5677777775 6799999999999996 58887743                   2355666666766666667777777


Q ss_pred             cCCccc-H-------HhhcccCcEEEEcCCC
Q 019513          171 ALRTSN-A-------LEILSQYEIVVDATDN  193 (340)
Q Consensus       171 ~~~~~~-~-------~~~l~~~DlVi~~tD~  193 (340)
                      +++..+ .       .+.+...|++|.+...
T Consensus        62 Dv~~~~~v~~~~~~~~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          62 DVADQQQLRDTFRKVVDHFGRLDILVNNAGV   92 (254)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ecCCHHHHHHHHHHHHHHcCCcCeecccccc
Confidence            776532 1       2233568888887644

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.059  Score=42.77  Aligned_cols=76  Identities=22%  Similarity=0.292  Sum_probs=48.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHH-cC-CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           95 SILVIGA-GGLGSPALLYLAA-CG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~-aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      ||.|+|+ |.+|+.+|..|+. .| +.+|.|+|.+                    ++++..+.-|...........+.  
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~--------------------~~~~g~a~Dl~h~~~~~~~~~~~--   59 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA--------------------PVTPGVAVDLSHIPTAVKIKGFS--   59 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS--------------------TTHHHHHHHHHTSCSSCEEEEEC--
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc--------------------ccchhHHHHHHCCccccCCcEEE--
Confidence            7999995 9999999998875 46 4679998732                    13333344555544444443322  


Q ss_pred             CCcccHHhhcccCcEEEEcCCCh
Q 019513          172 LRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                        ..+..+.+++.|+||.+...+
T Consensus        60 --~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1          60 --GEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             --SSCCHHHHTTCSEEEECCSCC
T ss_pred             --cCCCccccCCCCEEEECCCcc
Confidence              122244578999999887653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.19  E-value=0.0093  Score=47.38  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDV  127 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~  127 (340)
                      .+||+|||+|.+|.++|..|.+.|- .+|+++|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5799999999999999999999986 3799998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.19  E-value=0.029  Score=45.90  Aligned_cols=77  Identities=13%  Similarity=0.263  Sum_probs=53.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC-ceEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST-VHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~-v~i~~~  168 (340)
                      -.+.++|+|+|+|-+|...+....+.| ..++++|.+.-                       ..+.++...+. ++..  
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~-----------------------~l~~l~~~~~~~~~~~--   82 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVE-----------------------RLSYLETLFGSRVELL--   82 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHH-----------------------HHHHHHHHHGGGSEEE--
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHH-----------------------HHHHHHHhhcccceee--
Confidence            367899999999999999999999999 56999985431                       22333333322 2221  


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCCh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                        ....++..+.++++|+||.+.--+
T Consensus        83 --~~~~~~l~~~~~~aDivI~aalip  106 (168)
T d1pjca1          83 --YSNSAEIETAVAEADLLIGAVLVP  106 (168)
T ss_dssp             --ECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             --hhhhhhHHHhhccCcEEEEeeecC
Confidence              123356677889999999886644

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.18  E-value=0.01  Score=45.13  Aligned_cols=31  Identities=29%  Similarity=0.435  Sum_probs=28.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++|+|||+|.+|+++|..|++.|. +++|++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~   53 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGT-KVTILEG   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CeEEEECCCccceeeeeeeccccc-EEEEEEe
Confidence            689999999999999999999995 5999873

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.18  E-value=0.0061  Score=50.80  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|.+++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRH   76 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSS
T ss_pred             eccccceeeccccccchhhhhhhhccCce-EEEEeec
Confidence            57899999999999999999999998874 6666643

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.17  E-value=0.031  Score=46.97  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=67.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCccc--cccCCC---ccCc-ccHHHHHHHHHhhCCCceE
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRQ--VIHTEP---YIGQ-SKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~Rq--~l~~~~---diG~-~Ka~~a~~~L~~lnp~v~i  165 (340)
                      +.|.|||.||.|+.++..|.+.|+.  ++..+|.|.-..++..-+  ++..+.   -.|- .+.+..++...+       
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e-------   74 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALE-------   74 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHH-------
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChHHHHHHHHH-------
Confidence            5799999999999999999999975  577788886555543311  111110   0000 112222222211       


Q ss_pred             EEecccCCcccHHhhcccCcEEEEcCCCh-----hhHHHHHHHHHHcCCcEEEEee
Q 019513          166 IEHREALRTSNALEILSQYEIVVDATDNA-----PSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~-----~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                             ..+...+.++++|+||.+..--     ..-..+.++|++.+++.|...+
T Consensus        75 -------~~~~I~~~l~~~d~vfi~AGlGGGTGtgaapviA~~ake~g~lvvaivt  123 (198)
T d1ofua1          75 -------DRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVT  123 (198)
T ss_dssp             -------THHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             -------HHHHHHHHhCCCCeEEEEecCCCCccccHHHHHHHHHHHcCCCEEEEEe
Confidence                   1234566778999988775431     1344699999999998887543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.16  E-value=0.0041  Score=52.20  Aligned_cols=36  Identities=14%  Similarity=0.242  Sum_probs=30.6

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|++++|.|||+|.+|..+++.|...|.. +..+|.
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   78 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDT   78 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccc-cccccc
Confidence            468899999999999999999999999865 455554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.12  E-value=0.025  Score=45.12  Aligned_cols=84  Identities=17%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      ||.+||+|-+|+.++..|..+| .++++.|.+.                   .|++.+++.+   .  +.       .. 
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~-~~i~v~~r~~-------------------~~~~~l~~~~---g--~~-------~~-   48 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTP-HELIISGSSL-------------------ERSKEIAEQL---A--LP-------YA-   48 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSS-CEEEEECSSH-------------------HHHHHHHHHH---T--CC-------BC-
T ss_pred             EEEEEeccHHHHHHHHHHHhCC-CeEEEEcChH-------------------HhHHhhcccc---c--ee-------ee-
Confidence            6999999999999999999887 4566654321                   2333333222   2  11       11 


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      .+..+.++.+|+|+.|+........+..  ...+..+|+
T Consensus        49 ~~~~~~~~~~dvIilavkp~~~~~vl~~--l~~~~~iis   85 (152)
T d2ahra2          49 MSHQDLIDQVDLVILGIKPQLFETVLKP--LHFKQPIIS   85 (152)
T ss_dssp             SSHHHHHHTCSEEEECSCGGGHHHHHTT--SCCCSCEEE
T ss_pred             chhhhhhhccceeeeecchHhHHHHhhh--cccceeEec
Confidence            2345667899999999864333333322  123455665

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.11  E-value=0.016  Score=48.45  Aligned_cols=95  Identities=11%  Similarity=0.085  Sum_probs=53.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEE
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHII  166 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~  166 (340)
                      .||+|||+|..|-.+|.+|++.|..      .++|+|...- +--+-|......   ..............+ .+.+++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~-~GG~~~~gi~p~---~~~~~~~~~~~~~~~~~~g~~~~   78 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT-PWGLVRSGVAPD---HPKIKSISKQFEKTAEDPRFRFF   78 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS-CSTHHHHTSCTT---CTGGGGGHHHHHHHHTSTTEEEE
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC-CCCeeeeccCcc---cccchhhhhhhhhhhccCCceEE
Confidence            5899999999999999999999852      6899986431 111222211110   111122233333332 2344443


Q ss_pred             EecccCC-cccHHhhcccCcEEEEcCCC
Q 019513          167 EHREALR-TSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       167 ~~~~~~~-~~~~~~~l~~~DlVi~~tD~  193 (340)
                      .- ..+. .....++...||.|+.++..
T Consensus        79 ~~-~~v~~~~~~~~~~~~~~~v~~atGa  105 (239)
T d1lqta2          79 GN-VVVGEHVQPGELSERYDAVIYAVGA  105 (239)
T ss_dssp             ES-CCBTTTBCHHHHHHHSSEEEECCCC
T ss_pred             EE-EEeccccchhhhhccccceeeecCC
Confidence            32 2232 23445556678888888763

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.059  Score=43.00  Aligned_cols=86  Identities=16%  Similarity=0.182  Sum_probs=54.9

Q ss_pred             cEEEEcCChhHHH-HHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGAGGLGSP-ALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~GglGs~-va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +|.|||+|.+|.. .+..|... ++.-+.++|.+.                   .|++..++..   +  +.       +
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~-------------------~~~~~~~~~~---~--~~-------~   51 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR-------------------AKALPICESW---R--IP-------Y   51 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC-------------------TTHHHHHHHH---T--CC-------B
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechh-------------------Hhhhhhhhcc---c--cc-------c
Confidence            6999999999986 46666543 544455655332                   2444444332   1  11       1


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                       .++..+++++.|+|+.|+.+ ..+..+...+.+.|++++.
T Consensus        52 -~~~~~~l~~~~D~V~I~tp~-~~h~~~~~~al~~gk~V~~   90 (164)
T d1tlta1          52 -ADSLSSLAASCDAVFVHSST-ASHFDVVSTLLNAGVHVCV   90 (164)
T ss_dssp             -CSSHHHHHTTCSEEEECSCT-THHHHHHHHHHHTTCEEEE
T ss_pred             -cccchhhhhhcccccccccc-hhccccccccccccceeec
Confidence             12344556789999988874 5677777788899998764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.09  E-value=0.085  Score=46.82  Aligned_cols=107  Identities=14%  Similarity=0.178  Sum_probs=61.0

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +.|||.|+.| +|+.+++.|...|. +++.+|.       +.+.           +.......-...++.+++.  ..++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~-------~~~~-----------~~~~~~~~~~~~~~~v~~~--~~Dl   60 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN-------LSNS-----------TYDSVARLEVLTKHHIPFY--EVDL   60 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC-------CSSC-----------CTHHHHHHHHHHTSCCCEE--ECCT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC-------CCCc-----------chhHHHhHHhhcccCCeEE--Eeec
Confidence            5678888766 89999999999995 5777762       2221           1122222222223344433  3444


Q ss_pred             Cc-ccHHhhcc--cCcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513          173 RT-SNALEILS--QYEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAALGLEG  221 (340)
Q Consensus       173 ~~-~~~~~~l~--~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~~g~~G  221 (340)
                      .+ +....++.  +.|+|+.+......                 ...+-++|++.++ .+|..++...+|
T Consensus        61 ~d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg  130 (347)
T d1z45a2          61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYG  130 (347)
T ss_dssp             TCHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGC
T ss_pred             CCHHHHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeec
Confidence            43 33344443  68999987643211                 1234567888886 477777655554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.07  E-value=0.011  Score=45.59  Aligned_cols=57  Identities=18%  Similarity=0.262  Sum_probs=40.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI  159 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l  159 (340)
                      +.++|+|||+|.+|+++|..|++.|. ++++++...        +++..  .++..-++.+.+.+++.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~--------~~l~~--~~d~~~~~~~~~~l~~~   85 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD--------RPLGV--YLDKEFTDVLTEEMEAN   85 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS--------STTTT--TCCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC--------ccccc--ccchhhHHHHHHHhhcC
Confidence            45799999999999999999999996 599987532        11111  23344455666666665

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0067  Score=49.16  Aligned_cols=77  Identities=13%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+.+|+|+|+|++|..++..+...|...+ ++|...                   .|.+    .++++.-+.-+...   
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~~~~-------------------~~~~----~a~~lGad~~i~~~---   82 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTTSE-------------------AKRE----AAKALGADEVVNSR---   82 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSG-------------------GGHH----HHHHHTCSEEEETT---
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccch-hhccch-------------------hHHH----HHhccCCcEEEECc---
Confidence            35789999999999999999989998766 555321                   2322    23344333222211   


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhh
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPS  196 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~  196 (340)
                       +++......+.+|+||+|+....+
T Consensus        83 -~~~~~~~~~~~~D~vid~~g~~~~  106 (168)
T d1uufa2          83 -NADEMAAHLKSFDFILNTVAAPHN  106 (168)
T ss_dssp             -CHHHHHTTTTCEEEEEECCSSCCC
T ss_pred             -hhhHHHHhcCCCceeeeeeecchh
Confidence             122233344689999999987654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.06  E-value=0.073  Score=43.27  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=50.3

Q ss_pred             CCcEEEEcCChhHHHH--HHHHHHc-C--CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           93 KSSILVIGAGGLGSPA--LLYLAAC-G--VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        93 ~~~VlVvG~GglGs~v--a~~La~a-G--vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      +-||.|||+|.+|+..  +..|++. +  ..+|.|+|-|.-               .-+..+..+.+.....+...++..
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~---------------~~~~~~~~~~~~~~~~~~~~~i~~   66 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE---------------RLDAILTIAKKYVEEVGADLKFEK   66 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH---------------HHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch---------------HHHHHHHHHHHHHHhcCCCeEEEE
Confidence            3589999999999764  3345432 2  368999985531               001123334444555666666654


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCChh
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      ..      +..+.++++|+|+.+.....
T Consensus        67 ~t------d~~eaL~dad~Vv~~~~~g~   88 (171)
T d1obba1          67 TM------NLDDVIIDADFVINTAMVGG   88 (171)
T ss_dssp             ES------CHHHHHTTCSEEEECCCTTH
T ss_pred             eC------ChhhcccCCCeEeeeccccc
Confidence            33      34566789999998876543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.05  E-value=0.028  Score=44.95  Aligned_cols=81  Identities=12%  Similarity=0.092  Sum_probs=49.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCC----CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEE
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGV----GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIE  167 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGv----g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~  167 (340)
                      .||.|+|+ |.+|+.++..|+..++    ..+.|++.|.               +-.+.|++.+...+... .+......
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~   68 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI---------------TPMMGVLDGVLMELQDCALPLLKDVI   68 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC---------------GGGHHHHHHHHHHHHHTCCTTEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC---------------ccchhhhhhhhhhhcccccccccccc
Confidence            48999996 9999999999987665    3455555443               12234455555445443 23222111


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .     ..+..+.+++.|+||.+...+
T Consensus        69 ~-----~~~~~~~~~~~dvVVitag~~   90 (154)
T d5mdha1          69 A-----TDKEEIAFKDLDVAILVGSMP   90 (154)
T ss_dssp             E-----ESCHHHHTTTCSEEEECCSCC
T ss_pred             c-----CcccccccCCceEEEEecccC
Confidence            1     123456678999999876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.04  E-value=0.04  Score=47.50  Aligned_cols=82  Identities=12%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      .||+++.++|.|+ +|+|.++|+.|+..|. ++.++|.+.                   .+.+.+++.+   ...-++..
T Consensus         2 nrL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~-------------------~~~~~~~~~~---~~~~~~~~   58 (251)
T d1zk4a1           2 NRLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHS-------------------DVGEKAAKSV---GTPDQIQF   58 (251)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHH---CCTTTEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHh---CCCCcEEE
Confidence            3789999999984 5699999999999997 488876431                   2344444444   33335566


Q ss_pred             ecccCCccc--------HHhhcccCcEEEEcCCC
Q 019513          168 HREALRTSN--------ALEILSQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~~--------~~~~l~~~DlVi~~tD~  193 (340)
                      +..+++..+        ..+.+...|++|.+...
T Consensus        59 ~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAg~   92 (251)
T d1zk4a1          59 FQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCceEEEecccc
Confidence            666666422        22334567888877643

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.058  Score=45.03  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=67.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCc--cccccCCC---ccCc-ccHHHHHHHHHhhCCCceEE
Q 019513           95 SILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMH--RQVIHTEP---YIGQ-SKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~--Rq~l~~~~---diG~-~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      ||.|||.||.|+.++..|...|+.  ++..+|.|.-..++..  .-++...+   -.|. ...+..++...+-       
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~-------   74 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES-------   74 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT-------
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHH-------
Confidence            799999999999999999999986  5678888875444322  11222111   0111 2223333222221       


Q ss_pred             EecccCCcccHHhhcccCcEEEEcCCCh-----hhHHHHHHHHHHcCCcEEEEee
Q 019513          167 EHREALRTSNALEILSQYEIVVDATDNA-----PSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~-----~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                             .+...+.++++|+|+.+..--     ..-..+.++|++.+++.|...+
T Consensus        75 -------~~~I~~~l~~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv~ivt  122 (194)
T d1w5fa1          75 -------EEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVT  122 (194)
T ss_dssp             -------HHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             -------HHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHHHcCCceEEEEe
Confidence                   123456678899888775421     2345799999999998886543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.03  E-value=0.13  Score=43.88  Aligned_cols=108  Identities=16%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +.+||+|.|+ |-+|+.+++.|...| -++++++.+..              .....|.+.   .....+..+++.  ..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~--------------~~~~~~~~~---~~~~~~~~v~~v--~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEV--------------VSNIDKVQM---LLYFKQLGAKLI--EA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCC--------------SSCHHHHHH---HHHHHTTTCEEE--CC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCc--------------ccchhHHHH---HhhhccCCcEEE--Ee
Confidence            4678999997 669999999999999 45666543211              011112221   112223445543  33


Q ss_pred             cCC-cccHHhhcccCcEEEEcCCCh-------hhHHHHHHHHHHcCCcEEEEeecCc
Q 019513          171 ALR-TSNALEILSQYEIVVDATDNA-------PSRYMISDCCVVLGKPLVSGAALGL  219 (340)
Q Consensus       171 ~~~-~~~~~~~l~~~DlVi~~tD~~-------~~r~~i~~~~~~~~~p~i~~~~~g~  219 (340)
                      ++. .+.....+.+.+.++.+....       .....+..++...+.+++..+..|.
T Consensus        62 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~  118 (312)
T d1qyda_          62 SLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGM  118 (312)
T ss_dssp             CSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSCCSS
T ss_pred             ecccchhhhhhccCcchhhhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEeeccc
Confidence            433 344566778888888775332       2233455555555677777665544

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.01  E-value=0.01  Score=45.52  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=28.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++|+|||+|.+|+++|..|++.|. +++|++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~   53 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGI-DSYIFAR   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CEEEEECCchHHHHHHHHHHhccc-cceeeeh
Confidence            689999999999999999999995 6999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.012  Score=45.40  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++++|||+|.+|+++|..|+..|. +++|++.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~   54 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEF   54 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCc-ceeEEEe
Confidence            689999999999999999999995 5999874

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.99  E-value=0.082  Score=42.89  Aligned_cols=88  Identities=15%  Similarity=0.134  Sum_probs=54.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcC-CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC--CCceEEEeccc
Q 019513           95 SILVIGAGGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN--STVHIIEHREA  171 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln--p~v~i~~~~~~  171 (340)
                      ||+|||+|.+|...+..|.... +.-+.+.|.+                   ..|++.++   ++.+  +..++  +   
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~-------------------~~~~~~~~---~~~~~~~~~~~--~---   55 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRS-------------------LEKAKAFA---TANNYPESTKI--H---   55 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS-------------------HHHHHHHH---HHTTCCTTCEE--E---
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCC-------------------ccccccch---hccccccceee--c---
Confidence            6999999999999999998763 2222233432                   22333332   2222  22222  1   


Q ss_pred             CCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          172 LRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       172 ~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                         ++..+++  .+.|+|+.||.+ ..++.+...|.++|++++.
T Consensus        56 ---~~~~~ll~~~~iD~v~I~tp~-~~h~~~~~~~l~~g~~v~~   95 (184)
T d1ydwa1          56 ---GSYESLLEDPEIDALYVPLPT-SLHVEWAIKAAEKGKHILL   95 (184)
T ss_dssp             ---SSHHHHHHCTTCCEEEECCCG-GGHHHHHHHHHTTTCEEEE
T ss_pred             ---CcHHHhhhccccceeeecccc-hhhcchhhhhhhccceeec
Confidence               2334444  458999988874 5777777888889998764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.98  E-value=0.039  Score=47.46  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +||+++.++|-|+ +|+|..+|+.|+..|. ++.+.|.+
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~   38 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLV   38 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4799999999986 5799999999999997 57777743

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.98  E-value=0.0098  Score=50.50  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..||+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4689999999999999999999998 79999853

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.92  E-value=0.051  Score=47.52  Aligned_cols=84  Identities=15%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             HcccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      .+|++++++|-| .||+|..+|+.|+..| .++.+.|.+.                   .|.+.+++.|.+.++ ..+..
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~-------------------~~l~~~~~~l~~~~g-~~~~~   79 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKM-------------------DVLKATAEQISSQTG-NKVHA   79 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH-------------------HHHHHHHHHHHHHHS-SCEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCH-------------------HHHHHHHHHHHHhcC-CceEE
Confidence            478999999998 5679999999999999 5688887532                   355566666655542 23444


Q ss_pred             ecccCCccc--------HHhhcccCcEEEEcCCC
Q 019513          168 HREALRTSN--------ALEILSQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~~~--------~~~~l~~~DlVi~~tD~  193 (340)
                      +..+++..+        ..+.+...|++|.+...
T Consensus        80 ~~~D~~~~~~v~~~~~~~~~~~g~iDilvnnAg~  113 (294)
T d1w6ua_          80 IQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAG  113 (294)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             EEecccChHHHHHHhhhhhhhccccchhhhhhhh
Confidence            445555322        12334668888887643

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.91  E-value=0.065  Score=42.07  Aligned_cols=33  Identities=21%  Similarity=0.155  Sum_probs=26.7

Q ss_pred             ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          182 SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       182 ~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .++|+|||-+. +..-...-++|.++++|+|.+.
T Consensus        43 ~~~DvvIDFS~-p~~~~~~~~~~~~~~~~~ViGT   75 (135)
T d1yl7a1          43 GNTEVVIDFTH-PDVVMGNLEFLIDNGIHAVVGT   75 (135)
T ss_dssp             TTCSEEEECCC-TTTHHHHHHHHHHTTCEEEECC
T ss_pred             ccCCEEEEccc-HHHHHHHHHHHHhcCCCEEEec
Confidence            46899999986 5666677778999999999854

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.91  E-value=0.043  Score=44.10  Aligned_cols=77  Identities=16%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .+.+|+|+|+|++|..++..+...|. ++..+|...                   .|.+.+    +++.-+..+....  
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~-------------------~k~~~a----~~lGa~~~i~~~~--   80 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSS-------------------RKREDA----MKMGADHYIATLE--   80 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSS-------------------TTHHHH----HHHTCSEEEEGGG--
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccc-cccccccch-------------------hHHHHh----hccCCcEEeeccc--
Confidence            46889999999999999998889998 466676321                   233333    3443332222111  


Q ss_pred             CCcccHHhhcccCcEEEEcCCChh
Q 019513          172 LRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                       ..+........+|+|++|+....
T Consensus        81 -~~~~~~~~~~~~d~vi~~~~~~~  103 (168)
T d1piwa2          81 -EGDWGEKYFDTFDLIVVCASSLT  103 (168)
T ss_dssp             -TSCHHHHSCSCEEEEEECCSCST
T ss_pred             -hHHHHHhhhcccceEEEEecCCc
Confidence             12223445577999999977543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.86  E-value=0.011  Score=50.18  Aligned_cols=32  Identities=31%  Similarity=0.566  Sum_probs=30.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+|||+|..|..+|..|++.|+..++|++..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            69999999999999999999999999999864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.039  Score=49.08  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=34.9

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcCC----------CcEEEEeCCcc
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACGV----------GRLGIVDHDVV  128 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aGv----------g~i~lvD~D~V  128 (340)
                      .++|.+.+|++.|+|+.|..++..|+.+++          ++|.++|.+-+
T Consensus        20 gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          20 SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            357899999999999999999999887765          47999997654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.84  E-value=0.064  Score=46.48  Aligned_cols=37  Identities=22%  Similarity=0.453  Sum_probs=31.4

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .||+++.|+|.|+ +|+|..+|+.|+..|. ++.++|.+
T Consensus         2 nrL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (268)
T d2bgka1           2 NRLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIA   39 (268)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4799999999985 5699999999999996 58887743

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.83  E-value=0.017  Score=43.81  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=26.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC--CcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGV--GRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGv--g~i~lvD~  125 (340)
                      ++|+|||.|.+|.++|..|++.+-  .++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            689999999999999999887642  47888874

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.027  Score=45.49  Aligned_cols=76  Identities=16%  Similarity=0.157  Sum_probs=46.6

Q ss_pred             cEEEEcCChhHHHHHHHHHH-----cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEe
Q 019513           95 SILVIGAGGLGSPALLYLAA-----CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEH  168 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~-----aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~  168 (340)
                      ||.|||+|++|...+.....     ..+.+|.|+|-|                   ..|++.+.+..... .....+.. 
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did-------------------~~k~~~~~d~~~~~~~~~~~~~~-   61 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID-------------------EEKQKIVVDFVKRLVKDRFKVLI-   61 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC-------------------HHHHHHHHHHHHHHHTTSSEEEE-
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC-------------------cHHHHHHHHHHHhhhccCceEEE-
Confidence            69999999998777754332     225789999844                   23444444443433 22233322 


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChh
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                          + .+..+.++++|+||.+.....
T Consensus        62 ----t-~~~~~~l~~aDvVVita~~~~   83 (162)
T d1up7a1          62 ----S-DTFEGAVVDAKYVIFQFRPGG   83 (162)
T ss_dssp             ----C-SSHHHHHTTCSEEEECCCTTH
T ss_pred             ----e-cCcccccCCCCEEEEecccCC
Confidence                2 234566789999998877643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.80  E-value=0.012  Score=51.10  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            589999999999999999999999 69999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.053  Score=46.74  Aligned_cols=82  Identities=22%  Similarity=0.267  Sum_probs=53.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|+++.++|-|+ +|+|..+|+.|++.|. ++.+.|.+.                   .+.+.+++.+.+.. ..++..+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~-------------------~~~~~~~~~l~~~~-g~~~~~~   60 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNL-------------------EEASEAAQKLTEKY-GVETMAF   60 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-CCCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHHh-CCcEEEE
Confidence            378899999986 5699999999999996 588877432                   23444455554432 2345555


Q ss_pred             cccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          169 REALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      ..+++.++ .       .+.+...|++|.+..
T Consensus        61 ~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          61 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            56665422 1       222356888888754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.78  E-value=0.013  Score=44.46  Aligned_cols=31  Identities=19%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++|+|||+|.+|+++|..|++.|. +++|++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~   52 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEA   52 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEee
Confidence            589999999999999999999996 6999875

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.77  E-value=0.035  Score=44.91  Aligned_cols=85  Identities=11%  Similarity=0.095  Sum_probs=51.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ++-||.|||+|.+|...+..|... ++.-+.++|.+.-              ...                ...+..+  
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~--------------~~~----------------~~~~~~~--   49 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT--------------LDT----------------KTPVFDV--   49 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSC--------------CSS----------------SSCEEEG--
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccc--------------ccc----------------ccccccc--
Confidence            445799999999999999998764 3333444443210              000                0111111  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                          .+......+.|+|+.||.+. +...+...|.+.|+.+|.
T Consensus        50 ----~~~~~~~~~~D~Vvi~tp~~-~h~~~a~~aL~aG~~vv~   87 (170)
T d1f06a1          50 ----ADVDKHADDVDVLFLCMGSA-TDIPEQAPKFAQFACTVD   87 (170)
T ss_dssp             ----GGGGGTTTTCSEEEECSCTT-THHHHHHHHHTTTSEEEC
T ss_pred             ----hhhhhhccccceEEEeCCCc-ccHHHHHHHHHCCCcEEE
Confidence                12233456789998887754 466677778888887764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.77  E-value=0.07  Score=38.78  Aligned_cols=88  Identities=15%  Similarity=0.139  Sum_probs=55.2

Q ss_pred             CCcEEEEcCChhH-HHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGAGGLG-SPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~GglG-s~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +.||-++|.||+| +.+|+.|...|. .++--|.                   ..+   ...++|++..  +++..-   
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~-------------------~~~---~~t~~L~~~G--i~i~~g---   52 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNI-------------------EET---ERTAYLRKLG--IPIFVP---   52 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS-------------------SCC---HHHHHHHHTT--CCEESS---
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeC-------------------CCC---hhHHHHHHCC--CeEEee---
Confidence            3579999999998 688999999996 3444331                   111   1233477765  444211   


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                      ..+    +.+.+.|+||..+.-+..-.. -.+|++.|+|+++
T Consensus        53 h~~----~~i~~~d~vV~SsAI~~~npe-l~~A~~~gIpv~~   89 (89)
T d1j6ua1          53 HSA----DNWYDPDLVIKTPAVRDDNPE-IVRARMERVPIEN   89 (89)
T ss_dssp             CCT----TSCCCCSEEEECTTCCTTCHH-HHHHHHTTCCEEE
T ss_pred             ecc----cccCCCCEEEEecCcCCCCHH-HHHHHHcCCCccC
Confidence            112    224678999977654443333 3468899999875

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.73  E-value=0.013  Score=50.26  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      .-|+|||+|-.|+.+|..|++.| .+++|+|.+.+.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G-~~V~vlE~~~~~   39 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKEN-KNTALFESGTMG   39 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCCC
Confidence            35999999999999999999999 479999988653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.70  E-value=0.047  Score=47.12  Aligned_cols=78  Identities=21%  Similarity=0.286  Sum_probs=51.4

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +|++++++|.|+ +|+|.++|+.|+..|. ++.+.|.+                      .+.+.+..+++++.  +..+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~----------------------~~~l~~~~~~~~~~--~~~~   56 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADIN----------------------LEAARATAAEIGPA--ACAI   56 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESC----------------------HHHHHHHHHHHCTT--EEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC----------------------HHHHHHHHHHhCCc--eEEE
Confidence            588999999986 6799999999999996 58887742                      12344444555554  3445


Q ss_pred             cccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          169 REALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      ..+++..+ .       .+.+...|++|.+..
T Consensus        57 ~~Dvt~~~~v~~~~~~~~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          57 ALDVTDQASIDRCVAELLDRWGSIDILVNNAA   88 (256)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EeeCCCHHHHHHHHHHHHHHhCCccEEEeecc
Confidence            55555422 1       222356788887754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.68  E-value=0.062  Score=46.56  Aligned_cols=82  Identities=10%  Similarity=0.274  Sum_probs=56.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|+++.++|.|+ +|+|.++|+.|+..|. ++.+.|.+.                  ..+++.+++.+++...  ++..+
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~------------------~~~~~~~~~~~~~~g~--~~~~~   62 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK------------------EDEANSVLEEIKKVGG--EAIAV   62 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            588998998885 6799999999999997 577766332                  2356777777877654  45556


Q ss_pred             cccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          169 REALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      ..+++.++ .       .+.+...|++|.+..
T Consensus        63 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCEeeccce
Confidence            66666422 2       222356899988754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.64  E-value=0.015  Score=50.10  Aligned_cols=102  Identities=18%  Similarity=0.170  Sum_probs=60.1

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH-------h-hC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR-------S-IN  160 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~-------~-ln  160 (340)
                      ..|++++|+|-|.|.+|+++|++|...|. ++..+|.|.-                   +.+.+.....       + +.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~-------------------~~~~~~~~~g~~~~~~~~~~~   94 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKA-------------------AVSAAVAEEGADAVAPNAIYG   94 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH-------------------HHHHHHHHHCCEECCGGGTTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHH-------------------HHHHHHHhcCCcccCCccccc
Confidence            35899999999999999999999999994 5666664421                   1111111100       0 01


Q ss_pred             CCceEE---EecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513          161 STVHII---EHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV  212 (340)
Q Consensus       161 p~v~i~---~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i  212 (340)
                      -.+.|-   +....++.+++..+  ++.+|+....|+.+.....+.....|+.++
T Consensus        95 ~~cDIl~PcA~~~~I~~~~~~~l--~ak~Ive~ANn~~t~~ea~~~L~~rGI~~i  147 (230)
T d1leha1          95 VTCDIFAPCALGAVLNDFTIPQL--KAKVIAGSADNQLKDPRHGKYLHELGIVYA  147 (230)
T ss_dssp             CCCSEEEECSCSCCBSTTHHHHC--CCSEECCSCSCCBSSHHHHHHHHHHTCEEC
T ss_pred             ccccEecccccccccChHHhhcc--CccEEEecccCCCCCchHHHHHHhhCcEEE
Confidence            112222   12233444554444  466777777676655455666677777555

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.62  E-value=0.062  Score=46.47  Aligned_cols=80  Identities=19%  Similarity=0.271  Sum_probs=53.9

Q ss_pred             ccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |++++|+|.| .+|+|.++|+.|+..|. ++.++|.+                   ..+.+.+.+.+++....+  ..+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~-------------------~~~l~~~~~~~~~~~~~~--~~~~   61 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN-------------------EKELDECLEIWREKGLNV--EGSV   61 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCE--EEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCc--eEEE
Confidence            7899999998 56799999999999997 68888743                   245666777777765544  3444


Q ss_pred             ccCCccc-H-------Hhhc-ccCcEEEEcCC
Q 019513          170 EALRTSN-A-------LEIL-SQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~~-~-------~~~l-~~~DlVi~~tD  192 (340)
                      .+++..+ .       .+.+ ...|++|.+..
T Consensus        62 ~D~s~~~~~~~~~~~~~~~~~g~idilinnag   93 (258)
T d1ae1a_          62 CDLLSRTERDKLMQTVAHVFDGKLNILVNNAG   93 (258)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCcEEEecccc
Confidence            4555322 1       2222 24677776543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.59  E-value=0.019  Score=44.86  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ..++|+|||+|.+|.++|..|+..|. ++++++..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~   67 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTA   67 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeec
Confidence            35799999999999999999999996 59999853

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=94.57  E-value=0.04  Score=45.69  Aligned_cols=73  Identities=19%  Similarity=0.118  Sum_probs=52.5

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      |.++++|+|+||.|.++...+-..|...+.++|+....                                          
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd~~~~------------------------------------------   38 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGM------------------------------------------   38 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCCEEEECCCCTTG------------------------------------------
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcCCCCc------------------------------------------
Confidence            57899999999999999999999998888887752210                                          


Q ss_pred             CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcE
Q 019513          172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL  211 (340)
Q Consensus       172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~  211 (340)
                          .....+..+++++ +..+...|..+.+...+.+..+
T Consensus        39 ----~~~~~~~~~~~~i-aIG~~~~R~~~~~~~~~~~~~~   73 (193)
T d3bswa1          39 ----KFESTLPKYDFFI-AIGNNEIRKKIYQKISENGFKI   73 (193)
T ss_dssp             ----GGGGGSCCCEEEE-CCSCHHHHHHHHHHHHHTTCCB
T ss_pred             ----ccccccccccEEE-EECCcHHHHHHHHHhhhhcccc
Confidence                0112334577776 7777888988888888776654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.046  Score=49.13  Aligned_cols=111  Identities=19%  Similarity=0.164  Sum_probs=56.4

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +.|+|.|+.| +|+.++..|...|. +++.+|... ...|.             .|.+.+.......++.  ++.+..++
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~-~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~Dl   64 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA-SSFNT-------------ERVDHIYQDPHTCNPK--FHLHYGDL   64 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC-----------------------------------CC--EEECCCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC-cccch-------------hhHHHHHhhhhhcCCC--eEEEEeec
Confidence            5677889666 99999999999994 566666421 11111             1222222222233333  34445555


Q ss_pred             Cc-ccHHhhccc--CcEEEEcCCChh---------h--------HHHHHHHHHHcCC----cEEEEeecCcee
Q 019513          173 RT-SNALEILSQ--YEIVVDATDNAP---------S--------RYMISDCCVVLGK----PLVSGAALGLEG  221 (340)
Q Consensus       173 ~~-~~~~~~l~~--~DlVi~~tD~~~---------~--------r~~i~~~~~~~~~----p~i~~~~~g~~G  221 (340)
                      .. +...+.+++  .|+|+.+.....         .        -.-|-++|+..++    .+|..++...+|
T Consensus        65 ~d~~~~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG  137 (357)
T d1db3a_          65 SDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYG  137 (357)
T ss_dssp             SCHHHHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGT
T ss_pred             CCHHHHHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhC
Confidence            43 344555553  488888854311         0        0113366777654    388887766555

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.50  E-value=0.056  Score=46.59  Aligned_cols=35  Identities=14%  Similarity=0.053  Sum_probs=30.1

Q ss_pred             cccCCcEEEEcC-C--hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGA-G--GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~-G--glGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++++|.|+ |  |+|.++|+.|+..|.. +.|+|.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r   39 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYL   39 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            489999999997 4  6999999999999965 778773

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.43  E-value=0.019  Score=43.56  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ...++|+|||.|-+|+++|..|++.| .++++++.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g-~~vt~i~~   53 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATG-RRTVMLVR   53 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcc-hhheEeec
Confidence            34689999999999999999999999 56888774

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.40  E-value=0.019  Score=49.21  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      ++|++.||+++|+|+.|.-+++.|...|.++|.++|.+-+
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            5799999999999999999999999999999999997654

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=94.31  E-value=0.098  Score=46.61  Aligned_cols=41  Identities=17%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             HHcccCCcEEEEcCChhHHHHHHHHHHcC----------CCcEEEEeCCcc
Q 019513           88 QSNLLKSSILVIGAGGLGSPALLYLAACG----------VGRLGIVDHDVV  128 (340)
Q Consensus        88 q~~L~~~~VlVvG~GglGs~va~~La~aG----------vg~i~lvD~D~V  128 (340)
                      .++|.+.||+|+|+|+.|..+++.|+.++          .++|.++|.+-+
T Consensus        20 gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          20 KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            35789999999999999999999988763          347999997654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.31  E-value=0.021  Score=43.78  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .++|+|||.|.+|.++|..|+..|. ++++++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            4789999999999999999999995 68898753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.28  E-value=0.077  Score=40.57  Aligned_cols=85  Identities=9%  Similarity=-0.036  Sum_probs=55.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      +||+|+|.|.+|.++++.|...+   +.++|.|.-                   +++    .+...  ++.  .+..+.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~---i~vi~~d~~-------------------~~~----~~~~~--~~~--~i~Gd~~   50 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE---VFVLAEDEN-------------------VRK----KVLRS--GAN--FVHGDPT   50 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG---EEEEESCTT-------------------HHH----HHHHT--TCE--EEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC---CEEEEcchH-------------------HHH----HHHhc--Ccc--ccccccC
Confidence            58999999999999999996554   677776531                   222    22222  333  3334444


Q ss_pred             cccHHh--hcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513          174 TSNALE--ILSQYEIVVDATDNAPSRYMISDCCVVLG  208 (340)
Q Consensus       174 ~~~~~~--~l~~~DlVi~~tD~~~~r~~i~~~~~~~~  208 (340)
                      ......  -+.+++.||.++++......+...+++.+
T Consensus        51 ~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~   87 (129)
T d2fy8a1          51 RVSDLEKANVRGARAVIVNLESDSETIHCILGIRKID   87 (129)
T ss_dssp             SHHHHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHhhhhcCcEEEEeccchhhhHHHHHHHHHHC
Confidence            333222  25789999999998877777777776653

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=94.28  E-value=0.086  Score=46.82  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHc----------CCCcEEEEeCCcc
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAAC----------GVGRLGIVDHDVV  128 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~a----------Gvg~i~lvD~D~V  128 (340)
                      ++|++.||+|.|+|+.|..+++.|+.+          |.++|.++|.+-+
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            579999999999999999999999866          5679999997654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.28  E-value=0.012  Score=52.47  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=33.4

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|-|.|-+|+.+|+.|...|..-+++-|.+
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccc
Confidence            4789999999999999999999999998777777765

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.021  Score=43.94  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++|+|||.|.+|+++|..|++.|. +++|++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~   53 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIR   53 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEee
Confidence            689999999999999999999996 5888875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.27  E-value=0.055  Score=46.58  Aligned_cols=82  Identities=17%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|+++.++|.|+ +|+|..+|+.|+..|. ++.++|.+                   ..+++.+++.+++.+..  +..+
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~g~~--~~~~   64 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT-------------------QKSCDSVVDEIKSFGYE--SSGY   64 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESS-------------------HHHHHHHHHHHHTTTCC--EEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            367888888886 5799999999999996 68887743                   24567777777776543  4455


Q ss_pred             cccCCccc--------HHhhcccCcEEEEcCCC
Q 019513          169 REALRTSN--------ALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~--------~~~~l~~~DlVi~~tD~  193 (340)
                      ..+++.++        ..+.+...|++|.+...
T Consensus        65 ~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnag~   97 (251)
T d2c07a1          65 AGDVSKKEEISEVINKILTEHKNVDILVNNAGI   97 (251)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHCSCCCEEEECCCC
T ss_pred             EccCCCHHHHHHHHHHHHHhcCCceeeeecccc
Confidence            55665422        12334578888876543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.17  Score=44.39  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ||+|.|+.| +|+.+++.|...|--++..+|...   .+..                       .+...-.++.+..+++
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~---~~~~-----------------------~~~~~~~~~~i~~Di~   55 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS---DAIS-----------------------RFLNHPHFHFVEGDIS   55 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC---GGGG-----------------------GGTTCTTEEEEECCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC---cchh-----------------------hhccCCCeEEEECccC
Confidence            699999766 999999999999855677776421   0000                       1111222444554554


Q ss_pred             c-ccHH-hhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCCcEEEEeecCcee
Q 019513          174 T-SNAL-EILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       174 ~-~~~~-~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      . ++.. ...+++|+|+.+......                 -..+-++|.+.++..+..++....|
T Consensus        56 ~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~  122 (342)
T d2blla1          56 IHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  122 (342)
T ss_dssp             TCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             ChHHHHHHHHhCCCccccccccccccccccCCccccccccccccccccccccccccccccccccccc
Confidence            3 2323 355789999987654211                 1125567788888877766554444

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.24  E-value=0.018  Score=49.63  Aligned_cols=32  Identities=25%  Similarity=0.505  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            589999999999999999999996 69999953

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.22  E-value=0.062  Score=45.00  Aligned_cols=105  Identities=17%  Similarity=0.212  Sum_probs=64.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCccccccCCCccCcc---------cHHHHHHHHHhhCCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQS---------KVKSAAATCRSINST  162 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~---------Ka~~a~~~L~~lnp~  162 (340)
                      ++|-|||.||.|+.++.+|...|+.  ++..+|.|.-..++..-+.   .-.+|+.         ..+..++...+    
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~~~~~~---ki~iG~~~t~G~Gagg~p~~g~~aa~e----   74 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADV---KLDVGRDSTRGLGAGADPEVGRKAAED----   74 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHCCCSE---EEECCTTTC-----CCCHHHHHHHHHH----
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHhcCCcch---hhccccccccCCCcCcChhhhHhhHHH----
Confidence            4688999999999999999999985  6777787764433222110   1112221         12222222111    


Q ss_pred             ceEEEecccCCcccHHhhcccCcEEEEcCCCh-----hhHHHHHHHHHHcCCcEEEEe
Q 019513          163 VHIIEHREALRTSNALEILSQYEIVVDATDNA-----PSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~-----~~r~~i~~~~~~~~~p~i~~~  215 (340)
                                ..+...+.++++|+|+.+..--     ..-..|.++|++.++..|..-
T Consensus        75 ----------~~~~I~~~l~~~d~vfi~AGlGGgTGtGaaPviA~iake~g~l~v~iv  122 (198)
T d1rq2a1          75 ----------AKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVV  122 (198)
T ss_dssp             ----------THHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             ----------HHHHHHHHhcCCCEEEEEEecCCCCCcchHHHHHHHHHHcCCcEEEEE
Confidence                      1134456778999988765321     134568899999999887644

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.19  E-value=0.085  Score=45.32  Aligned_cols=77  Identities=22%  Similarity=0.418  Sum_probs=51.9

Q ss_pred             CcE-EEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSI-LVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~V-lVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +|| +|-|+ +|+|.++|+.|+..|. ++.+.|.+                   ..+.+.+++.+++...  ++..+..+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~g~--~~~~~~~D   58 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN-------------------DATAKAVASEINQAGG--HAVAVKVD   58 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            466 45565 5799999999999997 58887742                   3466777778877654  45555666


Q ss_pred             CCccc--------HHhhcccCcEEEEcCC
Q 019513          172 LRTSN--------ALEILSQYEIVVDATD  192 (340)
Q Consensus       172 ~~~~~--------~~~~l~~~DlVi~~tD  192 (340)
                      ++..+        ..+.+...|++|.+..
T Consensus        59 v~~~~~v~~~~~~~~~~~g~iDilVnnAG   87 (255)
T d1gega_          59 VSDRDQVFAAVEQARKTLGGFDVIVNNAG   87 (255)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCccEEEeccc
Confidence            66422        2233467899987653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.17  E-value=0.063  Score=46.29  Aligned_cols=36  Identities=22%  Similarity=0.476  Sum_probs=30.5

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|++ |+|..+|+.|+..|. ++.++|.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   42 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRS   42 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESS
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4788999999865 699999999999997 58888754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.22  Score=43.81  Aligned_cols=105  Identities=15%  Similarity=0.167  Sum_probs=59.5

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ||+|.|++| +|+.+++.|...| -++.++|.-.       +         +........+.+  .++++++  +..+++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~-------~---------~~~~~~~~~~~~--~~~~~~~--~~~Dl~   60 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLC-------N---------SKRSVLPVIERL--GGKHPTF--VEGDIR   60 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCS-------S---------CCTTHHHHHHHH--HTSCCEE--EECCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCC-------C---------cchhhHHHHHhh--cCCCCEE--EEeecC
Confidence            699999877 9999999999999 4577777311       1         011111111112  2334443  344454


Q ss_pred             c-ccHHhhcc--cCcEEEEcCCChhh--------H---------HHHHHHHHHcCCc-EEEEeecCce
Q 019513          174 T-SNALEILS--QYEIVVDATDNAPS--------R---------YMISDCCVVLGKP-LVSGAALGLE  220 (340)
Q Consensus       174 ~-~~~~~~l~--~~DlVi~~tD~~~~--------r---------~~i~~~~~~~~~p-~i~~~~~g~~  220 (340)
                      . +...+.++  ++|+||.+......        .         ..+-++|++.++. +|..++...+
T Consensus        61 d~~~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy  128 (338)
T d1udca_          61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY  128 (338)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGG
T ss_pred             CHHHHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEE
Confidence            3 34455565  68999986532111        0         1244678888764 6666655443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.10  E-value=0.1  Score=41.45  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=50.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-Cc-----EEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           95 SILVIGA-GGLGSPALLYLAACGV-GR-----LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGv-g~-----i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ||.|+|+ |.+|+.++..|+..++ ++     +.++|.                 +....|.+..+..+........-..
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~   68 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI-----------------PQAMKALEGVVMELEDCAFPLLAGL   68 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC-----------------GGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc-----------------ccchhhHcCchhhhhcccccccccc
Confidence            8999997 9999999999998875 32     233332                 2334466666666666543322111


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      ..    ..+..+.+++.|+||.+.+.+
T Consensus        69 ~~----~~~~~~~~~~advViitaG~~   91 (154)
T d1y7ta1          69 EA----TDDPKVAFKDADYALLVGAAP   91 (154)
T ss_dssp             EE----ESCHHHHTTTCSEEEECCCCC
T ss_pred             cc----CCchhhhcccccEEEeecCcC
Confidence            11    133456688999999887653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.09  E-value=0.13  Score=41.99  Aligned_cols=83  Identities=14%  Similarity=0.075  Sum_probs=50.1

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCC-C---cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGV-G---RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGv-g---~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      -.||.|+|+ |.+|+.++..|+...+ |   .+.|.+.|.               +-.+.+++..+-.+........-..
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di---------------~~~~~~l~g~~mdl~d~a~~~~~~~   88 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS---------------ERSFQALEGVAMELEDSLYPLLREV   88 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC---------------GGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecC---------------ccccchhcchhhhhcccccccccCc
Confidence            347999997 8999999999998765 2   233333222               1223455555555655433221111


Q ss_pred             ecccCCcccHHhhcccCcEEEEcCCCh
Q 019513          168 HREALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                      .    ...+..+.+++.|+||.+.+.+
T Consensus        89 ~----~~~~~~~~~~~aDvVvi~ag~~  111 (175)
T d7mdha1          89 S----IGIDPYEVFEDVDWALLIGAKP  111 (175)
T ss_dssp             E----EESCHHHHTTTCSEEEECCCCC
T ss_pred             c----ccccchhhccCCceEEEeeccC
Confidence            1    1234456789999999887664

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.31  Score=42.81  Aligned_cols=32  Identities=31%  Similarity=0.535  Sum_probs=26.9

Q ss_pred             CCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGAGG-LGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++||+|.|+.| +|+++++.|...|- +++.+|.
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            47899999766 89999999999994 6777774

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.021  Score=47.56  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|||+|-+|+.+|..++++|. .++++|.|.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            689999999999999999999996 588998765

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.06  E-value=0.061  Score=46.52  Aligned_cols=82  Identities=11%  Similarity=0.222  Sum_probs=54.9

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|.|++ |+|.++|+.|+..|. ++.++|.+                   ..+.+.+++.+.+...  ++..+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~   62 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN-------------------EYELNECLSKWQKKGF--QVTGS   62 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--ceEEE
Confidence            4789999999854 699999999999997 68887643                   2356666667766554  44555


Q ss_pred             cccCCccc--------HHhhc-ccCcEEEEcCCC
Q 019513          169 REALRTSN--------ALEIL-SQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~--------~~~~l-~~~DlVi~~tD~  193 (340)
                      ..+++..+        ..+.+ ...|++|.+...
T Consensus        63 ~~Dv~~~~~v~~~~~~~~~~~~g~idilvnnAG~   96 (259)
T d1xq1a_          63 VCDASLRPEREKLMQTVSSMFGGKLDILINNLGA   96 (259)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred             eccCCCHHHHHHHHHHHHHHhCCCcccccccccc
Confidence            55555321        11222 347888887654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.05  E-value=0.12  Score=46.47  Aligned_cols=107  Identities=14%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ||+|.|+.| +|+++++.|+..|...+..+|...-. .+..                    .+..+...-.++.+..+++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~-~~~~--------------------~~~~~~~~~~~~~~~~Dl~   60 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA-GNLE--------------------SLSDISESNRYNFEHADIC   60 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTT-CCGG--------------------GGTTTTTCTTEEEEECCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc-ccHH--------------------HHHhhhhcCCcEEEEccCC
Confidence            699999877 99999999999998878888854321 1110                    0111222223455555555


Q ss_pred             cc-cHHhhcc--cCcEEEEcCCChhhH-----------------HHHHHHHHHcC----------CcEEEEeecCceeE
Q 019513          174 TS-NALEILS--QYEIVVDATDNAPSR-----------------YMISDCCVVLG----------KPLVSGAALGLEGQ  222 (340)
Q Consensus       174 ~~-~~~~~l~--~~DlVi~~tD~~~~r-----------------~~i~~~~~~~~----------~p~i~~~~~g~~G~  222 (340)
                      .. ...+++.  ++|+|+.+.......                 .-+.++|++.+          +.+|..++...+|.
T Consensus        61 d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~  139 (361)
T d1kewa_          61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGD  139 (361)
T ss_dssp             CHHHHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCC
T ss_pred             CHHHHHHHHHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCC
Confidence            43 3344444  579999886432111                 12445666543          35888887776664

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.085  Score=45.68  Aligned_cols=79  Identities=11%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             CCcEEEE--cCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           93 KSSILVI--GAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVv--G~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .+||+||  |.+|+|-++|+.|++.|-.++.+.+.+                   ..|.+.+++.|++..+.+.+  +..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~~--~~~   60 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-------------------VTRGQAAVQQLQAEGLSPRF--HQL   60 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-------------------HHHHHHHHHHHHHTTCCCEE--EEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC-------------------HHHHHHHHHHHHhcCCcEEE--EEE
Confidence            5799888  677899999999998755678887643                   34778888889888777654  444


Q ss_pred             cCCccc--------HHhhcccCcEEEEcCC
Q 019513          171 ALRTSN--------ALEILSQYEIVVDATD  192 (340)
Q Consensus       171 ~~~~~~--------~~~~l~~~DlVi~~tD  192 (340)
                      +++...        +.+.+...|++|....
T Consensus        61 Dvs~~~sv~~~~~~~~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          61 DIDDLQSIRALRDFLRKEYGGLDVLVNNAG   90 (275)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             ecCCHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            555421        2233457899998754

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.044  Score=47.35  Aligned_cols=81  Identities=16%  Similarity=0.321  Sum_probs=56.8

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +|+++.++|-|+ +|+|.++|+.|+..|. ++.+.|.+                   ..+.+.+++.+++....  +..+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~~~~~~~~l~~~g~~--~~~~   65 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDIN-------------------ADAANHVVDEIQQLGGQ--AFAC   65 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcCCc--EEEE
Confidence            578899998886 5699999999999996 57777642                   34677777888876554  4455


Q ss_pred             cccCCccc--------HHhhcccCcEEEEcCC
Q 019513          169 REALRTSN--------ALEILSQYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~--------~~~~l~~~DlVi~~tD  192 (340)
                      ..+++.++        ..+.+...|++|.+..
T Consensus        66 ~~Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          66 RCDITSEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEeeeCCc
Confidence            55665422        1233457888888754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.01  E-value=0.021  Score=51.03  Aligned_cols=34  Identities=32%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++++|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~   34 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQR   34 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECC
Confidence            57899999999999999999999995 78898843

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.067  Score=45.94  Aligned_cols=82  Identities=18%  Similarity=0.307  Sum_probs=56.4

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|.++.|+|.|++ |+|.++|+.|+..|. ++.++|.+                   ..|.+.+++.++..++.+  ..+
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~-------------------~~~l~~~~~~~~~~~~~~--~~~   61 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDIN-------------------KHGLEETAAKCKGLGAKV--HTF   61 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCE--EEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCcE--EEE
Confidence            4778888888865 599999999999997 48877633                   346777888888776544  444


Q ss_pred             cccCCccc--------HHhhcccCcEEEEcCCC
Q 019513          169 REALRTSN--------ALEILSQYEIVVDATDN  193 (340)
Q Consensus       169 ~~~~~~~~--------~~~~l~~~DlVi~~tD~  193 (340)
                      ..+++..+        ..+.+...|++|.+...
T Consensus        62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinnag~   94 (244)
T d1yb1a_          62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV   94 (244)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred             EeeCCCHHHHHHHHHHHHHHcCCCceeEeeccc
Confidence            55555421        12234568888877643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.93  E-value=0.081  Score=45.39  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+++.++|-|+ +|+|.++|+.|+..|. ++.+.|.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~   39 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   39 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            689999999986 5699999999999997 58888753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.92  E-value=0.035  Score=44.38  Aligned_cols=33  Identities=30%  Similarity=0.511  Sum_probs=28.0

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|+|+|++|..++..+...|. ++..+|.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~   59 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDI   59 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCC-ccceecc
Confidence            35789999999999999999999994 6777764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.92  E-value=0.4  Score=40.22  Aligned_cols=105  Identities=17%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh-hCCCceEEEec
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS-INSTVHIIEHR  169 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~-lnp~v~i~~~~  169 (340)
                      ..+||+|.|+ |-+|+.+++.|...|. ++.+++.+.-..                ...+. ...+.. .++.+++.  .
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~~----------------~~~~~-~~~~~~~~~~~~~~~--~   61 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTAS----------------SNSEK-AQLLESFKASGANIV--H   61 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTT----------------TTHHH-HHHHHHHHTTTCEEE--C
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCccc----------------cchhH-HHHHHhhccCCcEEE--E
Confidence            3689999998 5599999999999995 577766432110                11111 122222 23345443  2


Q ss_pred             ccCC-cccHHhhcccCcEEEEcCCChhh--HHHHHHHHHHcC-CcEEEEee
Q 019513          170 EALR-TSNALEILSQYEIVVDATDNAPS--RYMISDCCVVLG-KPLVSGAA  216 (340)
Q Consensus       170 ~~~~-~~~~~~~l~~~DlVi~~tD~~~~--r~~i~~~~~~~~-~p~i~~~~  216 (340)
                      ..+. .......+...+.|+.+......  ...+.+++...+ +.++..+.
T Consensus        62 ~d~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s~  112 (307)
T d1qyca_          62 GSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSE  112 (307)
T ss_dssp             CCTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSC
T ss_pred             eecccchhhhhhhhhceeeeecccccccchhhHHHHHHHHhccccceeeec
Confidence            2333 23345566788888877765432  223444555544 44554443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.90  E-value=0.022  Score=47.02  Aligned_cols=33  Identities=24%  Similarity=0.261  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|||+|-+|+.+|..++++|.. ++++|.|.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            5799999999999999999999965 88999764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.86  E-value=0.031  Score=42.37  Aligned_cols=56  Identities=9%  Similarity=0.069  Sum_probs=39.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN  160 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln  160 (340)
                      ++|+|||.|.+|+++|..|...|..  .++|++...    -+-++       ....=++.+.+.+++.+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~----~iL~~-------~d~~~~~~l~~~l~~~G   78 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE----MILRG-------FDHTLREELTKQLTANG   78 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS----SSSTT-------SCHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc----hhhcc-------cchHHHHHHHHHHHhcC
Confidence            6899999999999999999988864  699997522    11121       22233556777777753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.2  Score=43.77  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             CCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCc-ccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           93 KSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDV-VELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        93 ~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~-Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      .+||+|.|+.| +|+.+++.|...|. +++.+|... -...++                       ........+...+.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~~~-----------------------~~~~~~~~~d~~~~   56 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFFTGRKRNV-----------------------EHWIGHENFELINH   56 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCGGGT-----------------------GGGTTCTTEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCCcCCHHHH-----------------------HHhcCCCceEEEeh
Confidence            47899999877 89999999999995 477776311 000111                       11112223333333


Q ss_pred             cCCcccHHhhcccCcEEEEcCCC---------hhh--------HHHHHHHHHHcCCcEEEEeecCcee
Q 019513          171 ALRTSNALEILSQYEIVVDATDN---------APS--------RYMISDCCVVLGKPLVSGAALGLEG  221 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~---------~~~--------r~~i~~~~~~~~~p~i~~~~~g~~G  221 (340)
                      ...    ..++.++|+||.+...         +..        -.-|-++|++.++.+|..++...+|
T Consensus        57 ~~~----~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~  120 (312)
T d2b69a1          57 DVV----EPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG  120 (312)
T ss_dssp             CTT----SCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGB
T ss_pred             HHH----HHHHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheec
Confidence            322    2234579999976432         111        0124467888889999888776665

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.78  E-value=0.12  Score=44.36  Aligned_cols=77  Identities=14%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             CcEEEE-c-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           94 SSILVI-G-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        94 ~~VlVv-G-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      .||+|| | .+|+|..+|+.|+..|. ++.++|.+                   ..+.+.+++.|++.+.  ++..+..+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~l~~~g~--~~~~~~~D   59 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARG-------------------EEGLRTTLKELREAGV--EADGRTCD   59 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            356544 5 56799999999999996 58887743                   2467777788877654  45556666


Q ss_pred             CCccc--------HHhhcccCcEEEEcCC
Q 019513          172 LRTSN--------ALEILSQYEIVVDATD  192 (340)
Q Consensus       172 ~~~~~--------~~~~l~~~DlVi~~tD  192 (340)
                      ++..+        ..+.+...|++|.+..
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnnAG   88 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNNAG   88 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEeccc
Confidence            65422        2233456889987753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.026  Score=47.93  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=29.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +.+||+|||+|-.|-.+|..|+++|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            56789999999999999999999997 6888874

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.74  E-value=0.02  Score=48.06  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~   74 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI   74 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcc-cccccCc
Confidence            34889999999999999999999999997 4666663

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.073  Score=45.57  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+|++++++|.|+ +|+|.++|+.|+..|. ++.++|.+.
T Consensus         2 ~~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~   40 (245)
T d2ag5a1           2 GRLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINE   40 (245)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            3688999999875 5699999999999995 688888653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.70  E-value=0.084  Score=45.47  Aligned_cols=82  Identities=17%  Similarity=0.260  Sum_probs=51.4

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |+++.++|-|+ +|+|.++|+.|+..|. ++.+.|...                  ..+.+.+++.+.+.. ..++..+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~------------------~~~~~~~~~~~~~~~-g~~~~~~~   61 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGD------------------AAEIEKVRAGLAAQH-GVKVLYDG   61 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSC------------------HHHHHHHHHHHHHHH-TSCEEEEC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHHhc-CCcEEEEE
Confidence            67777787775 5699999999999997 687776321                  124455555555443 34555666


Q ss_pred             ccCCccc-H-------HhhcccCcEEEEcCC
Q 019513          170 EALRTSN-A-------LEILSQYEIVVDATD  192 (340)
Q Consensus       170 ~~~~~~~-~-------~~~l~~~DlVi~~tD  192 (340)
                      .+++..+ .       .+.+...|++|.+..
T Consensus        62 ~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG   92 (260)
T d1x1ta1          62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAG   92 (260)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCcEEEeecc
Confidence            6666422 1       222346788887654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.70  E-value=0.036  Score=44.34  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D  126 (340)
                      ++.+|+|||.|.+|.++|..|.+.|.. ++++++..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            467899999999999999999999975 46665554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.66  E-value=0.22  Score=44.10  Aligned_cols=33  Identities=27%  Similarity=0.234  Sum_probs=27.3

Q ss_pred             cCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|.||+|.|+.| +|++++..|...|- .++.+|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            577899999666 89999999999994 5677763

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.65  E-value=0.12  Score=44.12  Aligned_cols=35  Identities=43%  Similarity=0.547  Sum_probs=29.8

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|++++++|.|++ |+|.++|+.|+..|. ++.+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r   37 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDR   37 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            6889999999865 599999999999996 5777664

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.64  E-value=0.077  Score=42.04  Aligned_cols=112  Identities=19%  Similarity=0.125  Sum_probs=60.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--------CCCceEE
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--------NSTVHII  166 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--------np~v~i~  166 (340)
                      ||.+||+|-.|+.+|++|+..|.  ..+++...                   +|+..+.+.....        ..++-+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~--~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~   60 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP--TLVWNRTF-------------------EKALRHQEEFGSEAVPLERVAEARVIFT   60 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC--EEEECSST-------------------HHHHHHHHHHCCEECCGGGGGGCSEEEE
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC--EEEEeCCH-------------------HHHHHHHHHcCCcccccccccceeEEEe
Confidence            69999999999999999998873  33443211                   1222222111100        1111111


Q ss_pred             Eeccc--CC--cccHHhhcccCcEEEEcC-CChhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEe
Q 019513          167 EHREA--LR--TSNALEILSQYEIVVDAT-DNAPSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN  227 (340)
Q Consensus       167 ~~~~~--~~--~~~~~~~l~~~DlVi~~t-D~~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~  227 (340)
                      .....  +.  .........+-.++||++ -++..-..+.+.+...++.++++-..|.     .|.+.++.
T Consensus        61 ~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~v  131 (156)
T d2cvza2          61 CLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVML  131 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEE
T ss_pred             cccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEE
Confidence            11000  00  011112234455666654 4456666788888889999998766654     36665544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.62  E-value=0.031  Score=43.18  Aligned_cols=31  Identities=29%  Similarity=0.489  Sum_probs=28.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++++|||.|-+|+++|..|.+.|. +++|++.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~   57 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEM   57 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCC-EEEEEEe
Confidence            689999999999999999999995 6888864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.57  E-value=0.032  Score=42.50  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=27.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      ++|+|||.|.+|+++|..|++.|.. ++++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~   52 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAE-VTVLE   52 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-eEEEE
Confidence            7899999999999999999999974 77765

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.55  E-value=0.11  Score=44.79  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=53.3

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|+++.++|-|++ |+|.++|+.|+..|. ++.+.|.+                   ..+.+.+.+.+++...  ++..+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g~--~~~~~   62 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN-------------------QKELNDCLTQWRSKGF--KVEAS   62 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--CceEE
Confidence            4788999999865 699999999999997 58887743                   3455666666666543  34444


Q ss_pred             cccCCccc-H-------Hhhcc-cCcEEEEcCC
Q 019513          169 REALRTSN-A-------LEILS-QYEIVVDATD  192 (340)
Q Consensus       169 ~~~~~~~~-~-------~~~l~-~~DlVi~~tD  192 (340)
                      ..+++..+ .       .+.+. ..|++|.+..
T Consensus        63 ~~Dv~~~~~v~~~~~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          63 VCDLSSRSERQELMNTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             EeeCCCHHHHHHHHHHHHHHhCCCceEEEECCc
Confidence            55555321 1       12223 4788887754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.52  E-value=0.026  Score=46.98  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC-----cEEEEeCCcc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVG-----RLGIVDHDVV  128 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg-----~i~lvD~D~V  128 (340)
                      ||+|||+|-+|..+|..|++.|..     +.++++.+..
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~   40 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFT   40 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCC
Confidence            699999999999999999999975     6777776543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.47  E-value=0.2  Score=40.42  Aligned_cols=90  Identities=12%  Similarity=0.080  Sum_probs=54.5

Q ss_pred             cCCcEEEEcCChhHHH-HHHHHHHcC-CCcEE-EEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           92 LKSSILVIGAGGLGSP-ALLYLAACG-VGRLG-IVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~-va~~La~aG-vg~i~-lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      +.-||.|||+|..|.. .+..|...+ .-+|. ++|.+.                   .|++.+++..    +...+  +
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~-------------------~~~~~~~~~~----~~~~~--~   56 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTR-------------------SHAEEFAKMV----GNPAV--F   56 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSH-------------------HHHHHHHHHH----SSCEE--E
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccH-------------------hhhhhhhccc----cccce--e
Confidence            4457999999999987 466676543 22333 444321                   2333333222    22221  1


Q ss_pred             cccCCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          169 REALRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       169 ~~~~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                            .+..+++  .+.|+|+.||. ...++.+...+.+.|++++.
T Consensus        57 ------~~~~ell~~~~id~v~I~tp-~~~h~~~~~~al~~gk~V~~   96 (181)
T d1zh8a1          57 ------DSYEELLESGLVDAVDLTLP-VELNLPFIEKALRKGVHVIC   96 (181)
T ss_dssp             ------SCHHHHHHSSCCSEEEECCC-GGGHHHHHHHHHHTTCEEEE
T ss_pred             ------eeeeccccccccceeecccc-ccccccccccccccchhhhc
Confidence                  2334555  35899998886 46777788888899998775

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.45  E-value=0.039  Score=45.66  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+..++|+|+|+|-+|..++....+.|. .++++|.+.
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~   62 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRA   62 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccH
Confidence            4678999999999999999999999996 799999654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.38  E-value=0.028  Score=47.25  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=27.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|+|||+|..|..+|..|++.|. +++|++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~   31 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLES   31 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            69999999999999999999997 6999984

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.36  E-value=0.17  Score=45.54  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             CCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccC----CCccC-cccHHHHHHHHHhhCCCceEE
Q 019513           93 KSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT----EPYIG-QSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        93 ~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~----~~diG-~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      ++||+|.|+.| +|+++++.|...| -.+..+|       ||.|.....    ..-.. ...-+.+...-...++.+++ 
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iD-------nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-   71 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVD-------NLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIEL-   71 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE-------CCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEE-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe-------cCCcccccccccccccccccchHHHHHHHHhhcCCCcEE-
Confidence            47899999877 9999999999999 5688888       343322110    00011 11222333333333455544 


Q ss_pred             EecccCCc-ccHHhhcc--cCcEEEEcCC
Q 019513          167 EHREALRT-SNALEILS--QYEIVVDATD  192 (340)
Q Consensus       167 ~~~~~~~~-~~~~~~l~--~~DlVi~~tD  192 (340)
                       +..+++. +....+++  ++|+|+.+..
T Consensus        72 -~~~Dl~d~~~l~~~~~~~~~d~ViHlAa   99 (393)
T d1i24a_          72 -YVGDICDFEFLAESFKSFEPDSVVHFGE   99 (393)
T ss_dssp             -EESCTTSHHHHHHHHHHHCCSEEEECCS
T ss_pred             -EEccCCCHHHHHHHHHhhcchheecccc
Confidence             4445554 34455555  4699998763

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.33  E-value=0.027  Score=44.56  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=26.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +||+|||.|.+|.++|..|.+ + .+++|++..
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEecc
Confidence            589999999999999999976 4 489999754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.18  Score=43.23  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=31.9

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .||+++.++|-|+ +|+|.++|+.|+..|. ++.+.|.+
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKD   39 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3789999999986 5799999999999996 58888754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.19  E-value=0.15  Score=43.52  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++++|.|++   |+|.++|+.|+..|. ++.|.|.
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~   42 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQ   42 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            4789999999985   699999999999997 4777663

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.17  E-value=0.26  Score=42.64  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=33.9

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|-|.|-+|..+++.|...|..-+++-|.+
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~   69 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD   69 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            5889999999999999999999999998888887765

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.09  E-value=0.03  Score=46.89  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=30.9

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||.|.+|..+|+.|..-|+. +..+|.
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   76 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDP   76 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             ccccceeeeeeeccccccccccccccccee-eeccCC
Confidence            468899999999999999999999999965 555664

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.06  E-value=0.04  Score=44.71  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=27.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            48999999999999999999996 69998853

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.02  E-value=0.042  Score=43.68  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=38.2

Q ss_pred             cEEEE-cCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc
Q 019513           95 SILVI-GAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV  163 (340)
Q Consensus        95 ~VlVv-G~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v  163 (340)
                      ||.|+ |+|++|..+|+.|+..|. ++.+.+.|                   ..|++.+.+.+....+..
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~-------------------~e~~~~l~~~i~~~~~~~   51 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRR-------------------EEKAEAKAAEYRRIAGDA   51 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS-------------------HHHHHHHHHHHHHHHSSC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCc
Confidence            68999 799999999999999995 47776643                   247778888887665443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.92  E-value=0.035  Score=42.54  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ++++|||+|-+|.++|..|++.|. +++++..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            689999999999999999999995 7999864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.87  E-value=0.14  Score=44.57  Aligned_cols=36  Identities=25%  Similarity=0.519  Sum_probs=31.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+++.|+|-|+ +|+|.++|+.|+..|. ++.++|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            588999999986 5799999999999996 68888743

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.83  E-value=0.081  Score=41.92  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=27.6

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .+.+|+|.|+|++|..++..+...|. ++.++|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~   59 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI   59 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCC
Confidence            56789999999999999888888887 5666653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.82  E-value=0.092  Score=42.12  Aligned_cols=36  Identities=17%  Similarity=0.092  Sum_probs=24.4

Q ss_pred             cccCcEEEEcCCCh-hhHHHHHHHHHHcCCcEEEEee
Q 019513          181 LSQYEIVVDATDNA-PSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       181 l~~~DlVi~~tD~~-~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                      +.+.|+|+.||.+. .......-.+.+.|+.+|+-+.
T Consensus        69 ~~~iDiVf~ATpag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          69 FADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             GGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             ccccCEEEEcCCchhHHHhHHHHHHHHcCCEEEEccc
Confidence            35789999998763 3444444445678898888654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.78  E-value=0.06  Score=44.61  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .+.+|+|+|+|++|..++..+...|..++.++|.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            45689999999999988888889999999999854

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.76  E-value=0.058  Score=43.99  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+.+|+|||.|..|..+|.+|++.|.. ..++|...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            357899999999999999999999985 56777543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.69  E-value=0.075  Score=43.60  Aligned_cols=84  Identities=20%  Similarity=0.171  Sum_probs=50.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      +|.|||+|-+|.++|..|+ .|. ++..+|-|.=-...|+.....    +..+   -..+.++.....  +..      .
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~~~v~~l~~g~~p----~~e~---~l~~~~~~~~~~--~~~------~   64 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILPSKVDKINNGLSP----IQDE---YIEYYLKSKQLS--IKA------T   64 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS-EEEEECSCHHHHHHHHTTCCS----SCCH---HHHHHHHHSCCC--EEE------E
T ss_pred             EEEEECCChhHHHHHHHHH-CCC-cEEEEECCHHHHHHHhhcccc----cchh---hHHHHhhhhhhh--hhc------c
Confidence            6999999999999998786 586 688899876544555443322    2222   123333332211  111      1


Q ss_pred             ccHHhhcccCcEEEEcCCChh
Q 019513          175 SNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      .+....+.++|+|+.|+.++.
T Consensus        65 ~~~~~~~~~~~ii~v~vpt~~   85 (196)
T d1dlja2          65 LDSKAAYKEAELVIIATPTNY   85 (196)
T ss_dssp             SCHHHHHHHCSEEEECCCCCE
T ss_pred             chhhhhhhccccccccCCccc
Confidence            122333567999999987754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.67  E-value=0.14  Score=44.10  Aligned_cols=84  Identities=17%  Similarity=0.237  Sum_probs=53.8

Q ss_pred             HcccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513           89 SNLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE  167 (340)
Q Consensus        89 ~~L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~  167 (340)
                      ..|++++|+|.| .+|+|.++|+.|++.|.. +.+.|.+.                  ..+++.+++.+++.+..+  ..
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~------------------~~~~~~~~~~~~~~g~~~--~~   72 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANS------------------TESAEEVVAAIKKNGSDA--AC   72 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHTTCCE--EE
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCc------------------hHHHHHHHHHHHhhCCce--ee
Confidence            458999999998 567999999999999965 66766431                  124556666677665544  33


Q ss_pred             ecccCCc-cc-------HHhhcccCcEEEEcCCC
Q 019513          168 HREALRT-SN-------ALEILSQYEIVVDATDN  193 (340)
Q Consensus       168 ~~~~~~~-~~-------~~~~l~~~DlVi~~tD~  193 (340)
                      +..+++. +.       ..+.+...|++|.....
T Consensus        73 ~~~D~~~~~~v~~~~~~~~~~~g~idilV~nag~  106 (272)
T d1g0oa_          73 VKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGV  106 (272)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHhCCCCcccccccc
Confidence            3344443 11       22333567887776543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.66  E-value=0.13  Score=43.85  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=30.7

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+++.++|-|+ +|+|.++|+.|+..|. ++.+.|.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            588999999986 5799999999999996 58888753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.19  Score=42.78  Aligned_cols=36  Identities=36%  Similarity=0.512  Sum_probs=30.4

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~   40 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            4789999999854 699999999999996 58887743

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.47  E-value=0.047  Score=48.51  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=29.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D  126 (340)
                      +||+|||+|..|..+|.+|.+.|.+ +++|++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            6899999999999999999998874 79998854

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.42  E-value=0.11  Score=41.76  Aligned_cols=79  Identities=15%  Similarity=0.186  Sum_probs=47.1

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +.+|+|.|+ |++|..++..+...|...|.+++.+                    .|    .+.++++..+-.+......
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~--------------------~~----~~~l~~~Ga~~vi~~~~~~   81 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD--------------------AK----REMLSRLGVEYVGDSRSVD   81 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH--------------------HH----HHHHHTTCCSEEEETTCST
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeeccc--------------------cc----ccccccccccccccCCccC
Confidence            467888885 9999999999999998766654321                    12    2445555544322211111


Q ss_pred             CCcccHHhhc--ccCcEEEEcCCChhh
Q 019513          172 LRTSNALEIL--SQYEIVVDATDNAPS  196 (340)
Q Consensus       172 ~~~~~~~~~l--~~~DlVi~~tD~~~~  196 (340)
                      +. +...+..  .++|+|+||+.....
T Consensus        82 ~~-~~v~~~t~~~g~d~v~d~~g~~~~  107 (183)
T d1pqwa_          82 FA-DEILELTDGYGVDVVLNSLAGEAI  107 (183)
T ss_dssp             HH-HHHHHHTTTCCEEEEEECCCTHHH
T ss_pred             HH-HHHHHHhCCCCEEEEEecccchHH
Confidence            11 2222322  469999999986433

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.34  E-value=0.14  Score=43.95  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .||+++.++|.|+ +|+|..+|+.|+..|. ++.+.|.
T Consensus         2 nrL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~   38 (253)
T d1hxha_           2 NRLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDI   38 (253)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4789999999985 5799999999999997 4777764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.037  Score=45.01  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |+.+|+|||.|..|...|.+|++.|.. .+|||..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            467899999999999999999999984 6777743

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.29  E-value=0.054  Score=46.38  Aligned_cols=31  Identities=39%  Similarity=0.499  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      |+|||+|-.|+.+|..|++.|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            9999999999999999999996 699998643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.28  E-value=0.17  Score=44.71  Aligned_cols=36  Identities=33%  Similarity=0.429  Sum_probs=30.3

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+++.++|-|++ |+|..+|+.|+..|. ++.+.|.+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~   40 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLG   40 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            6788899998865 699999999999996 58887754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.25  E-value=0.16  Score=43.78  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|+++.++|.|++ |+|.++|+.|+..|. ++.+.|.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4789999999865 699999999999997 48888753

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.18  E-value=0.16  Score=41.35  Aligned_cols=40  Identities=18%  Similarity=0.125  Sum_probs=29.7

Q ss_pred             cHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          176 NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       176 ~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                      +..+++++.|+||+||..+.++.....+ .+.|+..|..++
T Consensus        72 ~~~~~~~~vDvViEcTG~f~~~~~~~~h-l~~G~k~Vi~s~  111 (172)
T d2czca2          72 TLNDLLEKVDIIVDATPGGIGAKNKPLY-EKAGVKAIFQGG  111 (172)
T ss_dssp             BHHHHHTTCSEEEECCSTTHHHHHHHHH-HHHTCEEEECTT
T ss_pred             hhhhhhccCCEEEECCCCCCCHHHHHHH-HHcCCCEEEECC
Confidence            4556678999999999999988777654 456777765443

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.11  E-value=0.081  Score=42.49  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVG-RLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~  125 (340)
                      .++|+|||.|.+|.++|..|.+.|.. +|+++..
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            46799999999999999999999975 5666543

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.01  E-value=0.43  Score=41.93  Aligned_cols=107  Identities=12%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             CCcEEEEcCCh-hHHHHHHHHHHcCCC-cEEEEeCCccccc-CCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           93 KSSILVIGAGG-LGSPALLYLAACGVG-RLGIVDHDVVELN-NMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        93 ~~~VlVvG~Gg-lGs~va~~La~aGvg-~i~lvD~D~Ve~s-NL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .++|||.|+.| +|+.++..|...|-. +++.+|  .++.+ +..+.                    ..+. .-.++.+.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d--~~~~~~~~~~~--------------------~~~~-~~~i~~~~   58 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD--KLTYAGNKANL--------------------EAIL-GDRVELVV   58 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE--CCCTTCCGGGT--------------------GGGC-SSSEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe--CCCccccHHHH--------------------HHhh-cCCeEEEE
Confidence            46899999655 999999999999853 355555  22111 11110                    0010 12334444


Q ss_pred             ccCCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCCcEEEEeecCceeE
Q 019513          170 EALRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGKPLVSGAALGLEGQ  222 (340)
Q Consensus       170 ~~~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~p~i~~~~~g~~G~  222 (340)
                      .++.. +....++..+|.|+.+......                 ...+-+.|...++.+|..++...+|.
T Consensus        59 ~Di~d~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~  129 (346)
T d1oc2a_          59 GDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGD  129 (346)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCC
T ss_pred             ccCCCHHHHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecc
Confidence            45543 4445566777777665432211                 12234678888888888777666664

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=91.91  E-value=0.25  Score=43.63  Aligned_cols=81  Identities=19%  Similarity=0.111  Sum_probs=50.5

Q ss_pred             CCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +++|+|.|+.| +|+++++.|...|..-+.+++.                    ..|..-.........+.-....+..+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~D   70 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS--------------------ASKLANLQKRWDAKYPGRFETAVVED   70 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS--------------------HHHHHHHHHHHHHHSTTTEEEEECSC
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC--------------------chhHHHHHHhhhccccccccEEEecc
Confidence            68999999888 9999999999999654443321                    12333344433334443333334444


Q ss_pred             CC-cccHHhhcccCcEEEEcCCC
Q 019513          172 LR-TSNALEILSQYEIVVDATDN  193 (340)
Q Consensus       172 ~~-~~~~~~~l~~~DlVi~~tD~  193 (340)
                      +. .....+.+.++|.|+.+...
T Consensus        71 l~~~~~~~~~~~~~~~v~~~a~~   93 (342)
T d1y1pa1          71 MLKQGAYDEVIKGAAGVAHIASV   93 (342)
T ss_dssp             TTSTTTTTTTTTTCSEEEECCCC
T ss_pred             ccchhhhhhhcccchhhhhhccc
Confidence            44 34455667889999877655

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.90  E-value=0.12  Score=42.26  Aligned_cols=103  Identities=13%  Similarity=0.071  Sum_probs=53.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcC-CCcEEEEeCCcccccCCccccccCCCcc-CcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVIGAGGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYI-GQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~di-G~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      ||.|.|.|.+|..+++.|.... +.-+.|-|...-.   .....+.....+ +......   .+.+..  .        .
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~--i--------~   66 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNY---EAFIAHRRGIRIYVPQQSIK---KFEESG--I--------P   66 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSH---HHHHHHHTTCCEECCGGGHH---HHHTTT--C--------C
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcH---HHHHhcccCcceeccCccce---eccccc--e--------e
Confidence            7999999999999999998653 3333333321100   000000000011 1111110   011110  0        0


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG  214 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~  214 (340)
                      ...+..+.+.+.|+||+||..+..+.....+ .+.++++|..
T Consensus        67 v~g~~~~~~~~vDiViecTG~f~~~e~a~~h-l~~G~KvIi~  107 (178)
T d1b7go1          67 VAGTVEDLIKTSDIVVDTTPNGVGAQYKPIY-LQLQRNAIFQ  107 (178)
T ss_dssp             CCCCHHHHHHHCSEEEECCSTTHHHHHHHHH-HHTTCEEEEC
T ss_pred             cCCchhhhhhcCCEEEECCCCcCCHHHHHHH-HHcCCEEEEE
Confidence            1123455567899999999998877665443 4567777653

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.83  E-value=0.35  Score=38.84  Aligned_cols=79  Identities=18%  Similarity=0.145  Sum_probs=47.0

Q ss_pred             CcEEEEcCChhHH--HHHHHHHHc---CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHH----HHHHhhCCCce
Q 019513           94 SSILVIGAGGLGS--PALLYLAAC---GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAA----ATCRSINSTVH  164 (340)
Q Consensus        94 ~~VlVvG~GglGs--~va~~La~a---Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~----~~L~~lnp~v~  164 (340)
                      .||.|||+|++|.  .++..|...   .+++|.|+|-|.                 ++.|.+++-    ......+..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e-----------------~~~~~~~~d~~~~~~~~~~~~~~~   64 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPIE   64 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc-----------------cHHHHHHHHHHHHHHHHhcCCCce
Confidence            4799999997764  344444332   246888887432                 122333333    23445566666


Q ss_pred             EEEecccCCcccHHhhcccCcEEEEcCCChh
Q 019513          165 IIEHREALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       165 i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                      +....      +..+.++++|+||.+.....
T Consensus        65 ~~~~t------d~~~al~gaDvVv~ta~~~~   89 (169)
T d1s6ya1          65 IHLTL------DRRRALDGADFVTTQFRVGG   89 (169)
T ss_dssp             EEEES------CHHHHHTTCSEEEECCCTTH
T ss_pred             eeecC------CchhhcCCCCEEEEccccCC
Confidence            65443      23455789999998877644

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.79  E-value=0.6  Score=40.48  Aligned_cols=107  Identities=18%  Similarity=0.200  Sum_probs=61.0

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCC-----CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           95 SILVIGAGG-LGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        95 ~VlVvG~Gg-lGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ||+|.|+.| +|+++++.|...|.     .++..+|.-.....-                     ..+.....+..+..+
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~~~~~~~   60 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR---------------------ANLAPVDADPRLRFV   60 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG---------------------GGGGGGTTCTTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH---------------------hHhhhhhcCCCeEEE
Confidence            699998666 89999999999774     356666643221100                     011122223334444


Q ss_pred             cccCCc-ccHHhhcccCcEEEEcCCChh-----------------hHHHHHHHHHHcCCc-EEEEeecCceeE
Q 019513          169 REALRT-SNALEILSQYEIVVDATDNAP-----------------SRYMISDCCVVLGKP-LVSGAALGLEGQ  222 (340)
Q Consensus       169 ~~~~~~-~~~~~~l~~~DlVi~~tD~~~-----------------~r~~i~~~~~~~~~p-~i~~~~~g~~G~  222 (340)
                      ...... ..........|+|+.+.....                 .-..+-+.|.+++++ +|..++...+|.
T Consensus        61 ~~d~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~  133 (322)
T d1r6da_          61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGS  133 (322)
T ss_dssp             ECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCC
T ss_pred             EeccccchhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecC
Confidence            444443 333445577888887653211                 112245677777764 888887776663

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.77  E-value=0.17  Score=43.79  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=46.8

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      +||||.|+.| +|+.+++.|...|. +++.+|.       +.+.           ....-...+.. .+.++  .+..++
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~-------~~~~-----------~~~~~~~~~~~-~~~~~--~i~~Di   58 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDN-------LSRK-----------GATDNLHWLSS-LGNFE--FVHGDI   58 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC-------CCST-----------THHHHHHHHHT-TCCCE--EEECCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC-------CCcc-----------cchhHHHHhhc-cCCcE--EEEccc
Confidence            5899999766 99999999999995 5777772       2221           11111122222 23444  445555


Q ss_pred             Cc-ccHHhhccc--CcEEEEcCCC
Q 019513          173 RT-SNALEILSQ--YEIVVDATDN  193 (340)
Q Consensus       173 ~~-~~~~~~l~~--~DlVi~~tD~  193 (340)
                      .. +...+.+++  +|+|+.+...
T Consensus        59 ~~~~~l~~~~~~~~~d~Vih~aa~   82 (338)
T d1orra_          59 RNKNDVTRLITKYMPDSCFHLAGQ   82 (338)
T ss_dssp             TCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCHHHHHHHHHhcCCceEEeeccc
Confidence            53 444555544  5999988643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.74  E-value=0.075  Score=44.53  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -|+|||+|..|..+|..|++.|. ++.|+|..
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~-~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            49999999999999999999997 68899854

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.23  Score=42.20  Aligned_cols=35  Identities=29%  Similarity=0.273  Sum_probs=28.7

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |+++.++|-|+ +|+|..+|+.|+..|. ++.+.|.+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~   37 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATS   37 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            67888888885 5699999999999997 57777643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.68  E-value=0.072  Score=44.28  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ..|.+++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   80 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDP   80 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             eeeeCceEEEeccccccccceeeeeccccc-eeeccC
Confidence            458999999999999999999999988865 555564

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.14  Score=40.96  Aligned_cols=32  Identities=41%  Similarity=0.531  Sum_probs=26.4

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIV  123 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lv  123 (340)
                      ++.+|+|.|+ |++|..++..+...|...|.++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~   60 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTA   60 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeccccccccccccccccCccccccc
Confidence            4568999996 9999999999999998655554

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=91.51  E-value=0.11  Score=45.19  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=23.1

Q ss_pred             CCcEEEEcCCh-hHHHHHHHHHHcCCCcE
Q 019513           93 KSSILVIGAGG-LGSPALLYLAACGVGRL  120 (340)
Q Consensus        93 ~~~VlVvG~Gg-lGs~va~~La~aGvg~i  120 (340)
                      .+||+|.|+.| +|+.+++.|...|--.+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi   30 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVEL   30 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEE
Confidence            46899999766 89999999999985433

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.47  E-value=0.16  Score=43.52  Aligned_cols=82  Identities=12%  Similarity=0.207  Sum_probs=52.1

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      |.++.|+|.|+ +|+|.++|+.|+..|.. +.|.+..                  -..+.+.+.+.+++.+.++  ..+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~------------------~~~~~~~~~~~~~~~g~~~--~~~~   62 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGS------------------SSKAAEEVVAELKKLGAQG--VAIQ   62 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTTCCE--EEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCC------------------ChHHHHHHHHHHHHcCCCc--eEec
Confidence            77888888875 56999999999999976 4443321                  1234566777777766543  4555


Q ss_pred             ccCCcc-cH-------HhhcccCcEEEEcCCC
Q 019513          170 EALRTS-NA-------LEILSQYEIVVDATDN  193 (340)
Q Consensus       170 ~~~~~~-~~-------~~~l~~~DlVi~~tD~  193 (340)
                      .+++.. ..       .+.+...|++|.+...
T Consensus        63 ~D~~~~~~v~~~~~~~~~~~g~idilinnag~   94 (259)
T d1ja9a_          63 ADISKPSEVVALFDKAVSHFGGLDFVMSNSGM   94 (259)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCEEEEECCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCcEEEecccc
Confidence            555532 22       2223467888876543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.089  Score=43.28  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=28.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      -|+|||+|..|..+|.++++.|. ++.|||.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccC
Confidence            48999999999999999999996 699998654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.32  E-value=0.56  Score=40.99  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~  125 (340)
                      +.+-++|||.|+.| +|+++++.|...|- ++..+|.
T Consensus        13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          13 PAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            34557899998666 89999999999996 5666774

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=91.32  E-value=0.4  Score=38.72  Aligned_cols=39  Identities=15%  Similarity=0.134  Sum_probs=29.4

Q ss_pred             cHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          176 NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       176 ~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      +..+++++.|+||+||..+.++.....+. ..|+.+|..+
T Consensus        71 ~~~~~~~~vDvViEcTG~f~~~~~~~~hl-~~G~K~vi~~  109 (171)
T d1cf2o1          71 TVDDMLDEADIVIDCTPEGIGAKNLKMYK-EKGIKAIFQG  109 (171)
T ss_dssp             EHHHHHHTCSEEEECCSTTHHHHHHHHHH-HTTCEEEECT
T ss_pred             ChhHhhcCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEC
Confidence            44556788999999999998887766654 5677777643

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.29  E-value=0.15  Score=41.55  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=32.2

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      .|++++|+|||-+. +|.++|..|+..|. .++++|.+..
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~~~   64 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNI   64 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC-EEEEeccccc
Confidence            78999999999886 69999999999985 6788775543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.26  E-value=0.36  Score=38.80  Aligned_cols=71  Identities=15%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      -|..++|+|+|.|-+|.-+|..|...|. ++++++-|.+-                         .|+..--..++    
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~-------------------------alqA~mdGf~v----   69 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPIC-------------------------AIQAVMEGFNV----   69 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHH-------------------------HHHHHTTTCEE----
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchh-------------------------hHHHHhcCCcc----
Confidence            4788999999999999999999999995 68888877641                         22222212222    


Q ss_pred             ccCCcccHHhhcccCcEEEEcCCChh
Q 019513          170 EALRTSNALEILSQYEIVVDATDNAP  195 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~~tD~~~  195 (340)
                           ....+.++..|+||-+|.+..
T Consensus        70 -----~~~~~a~~~aDi~vTaTGn~~   90 (163)
T d1v8ba1          70 -----VTLDEIVDKGDFFITCTGNVD   90 (163)
T ss_dssp             -----CCHHHHTTTCSEEEECCSSSS
T ss_pred             -----CchhHccccCcEEEEcCCCCc
Confidence                 234566778899999998865

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.24  E-value=0.3  Score=41.39  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             CcEE-EEcC-ChhHHHHHHHHHHcCCC------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           94 SSIL-VIGA-GGLGSPALLYLAACGVG------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        94 ~~Vl-VvG~-GglGs~va~~La~aGvg------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      ++|+ |-|+ +|+|.++|+.|+..|..      .+.+.|.                   ...+.+.+++.+++.++  ++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r-------------------~~~~l~~~~~~~~~~g~--~~   59 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR-------------------TAADLEKISLECRAEGA--LT   59 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES-------------------CHHHHHHHHHHHHTTTC--EE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeC-------------------CHHHHHHHHHHHHhcCC--cE
Confidence            4655 4465 57999999999999986      2455442                   23456666777766543  45


Q ss_pred             EEecccCCccc--------HHhhcccCcEEEEcCC
Q 019513          166 IEHREALRTSN--------ALEILSQYEIVVDATD  192 (340)
Q Consensus       166 ~~~~~~~~~~~--------~~~~l~~~DlVi~~tD  192 (340)
                      ..+..+++..+        ..+.+...|++|.+..
T Consensus        60 ~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          60 DTITADISDMADVRRLTTHIVERYGHIDCLVNNAG   94 (240)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHcCCcceeecccc
Confidence            55555666422        2233456888887754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.24  E-value=0.2  Score=40.63  Aligned_cols=30  Identities=23%  Similarity=0.261  Sum_probs=24.4

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513           94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD  124 (340)
                      ++|+|.|+ |.+|+.+++.|+..|- .++++|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~-~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSD-KFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTT-TCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCC-cEEEEE
Confidence            68999995 7799999999999995 345554

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=91.22  E-value=0.54  Score=39.67  Aligned_cols=82  Identities=20%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             CCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513           93 KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA  171 (340)
Q Consensus        93 ~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~  171 (340)
                      +.+|+|.| .||+|.++|+.|+..|..+|.|+-.          .      .....+++.+.+.+....  .++..+..+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R----------~------~~~~~~~~~~~~~l~~~g--~~v~~~~~D   70 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSR----------S------GPDADGAGELVAELEALG--ARTTVAACD   70 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEES----------S------GGGSTTHHHHHHHHHHTT--CEEEEEECC
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC----------C------ccCHHHHHHHHHHHHhcc--ccccccccc
Confidence            45788888 5789999999999999988888631          1      122234555666666554  456666666


Q ss_pred             CCccc-HHhhc------ccCcEEEEcCC
Q 019513          172 LRTSN-ALEIL------SQYEIVVDATD  192 (340)
Q Consensus       172 ~~~~~-~~~~l------~~~DlVi~~tD  192 (340)
                      ++... ...++      ...|.|+.+..
T Consensus        71 v~d~~~~~~~~~~i~~~~~i~~vv~~ag   98 (259)
T d2fr1a1          71 VTDRESVRELLGGIGDDVPLSAVFHAAA   98 (259)
T ss_dssp             TTCHHHHHHHHHTSCTTSCEEEEEECCC
T ss_pred             cchHHHHHHhhccccccccccccccccc
Confidence            66422 22221      13566776654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.12  E-value=0.22  Score=42.09  Aligned_cols=35  Identities=20%  Similarity=0.175  Sum_probs=29.8

Q ss_pred             cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~  125 (340)
                      +|++++|+|.|++   |+|..+|+.|++.|.. +.|.|.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~   39 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQ   39 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeC
Confidence            4889999999875   6999999999999966 777664

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.09  E-value=0.3  Score=38.24  Aligned_cols=90  Identities=18%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcC--CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           94 SSILVIGAGG-LGSPALLYLAACG--VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aG--vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      -+|.|||+.| +|.++++.|....  .-+|..+               .+.+..|+.        +...+++..+.    
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~---------------~s~~~~Gk~--------i~~~~~~~~~~----   55 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLL---------------ASAESAGQR--------MGFAESSLRVG----   55 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE---------------ECTTTTTCE--------EEETTEEEECE----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEE---------------eecccCCcc--------eeeccccchhc----
Confidence            5799999855 8999999998654  3445543               233344542        01111111111    


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .+    ..+.+.++|+++.|+.+..++.+... ....+..+|+.+
T Consensus        56 ~~----~~~~~~~~d~vf~a~p~~~s~~~~~~-~~~~g~~VID~S   95 (144)
T d2hjsa1          56 DV----DSFDFSSVGLAFFAAAAEVSRAHAER-ARAAGCSVIDLS   95 (144)
T ss_dssp             EG----GGCCGGGCSEEEECSCHHHHHHHHHH-HHHTTCEEEETT
T ss_pred             cc----hhhhhccceEEEecCCcchhhhhccc-cccCCceEEeec
Confidence            11    12335789999999887666655544 567788888743

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.98  E-value=0.12  Score=42.37  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      .-|+|||+|..|..+|.++++.|. ++.||+.+.+
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~~   37 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNL   37 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCCC
Confidence            458999999999999999999996 6889887653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.12  Score=42.53  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      -|+|||+|..|..+|.++++.|- ++.|||.+.+
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~   37 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGA-RAAVVESHKL   37 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCC
Confidence            48999999999999999999994 6999997764

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.97  E-value=0.11  Score=42.32  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=28.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVG-RLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D  126 (340)
                      ||+|||+|.+|.++|..|.+.+-+ +|++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            799999999999999999998775 69999854

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=90.90  E-value=0.19  Score=42.58  Aligned_cols=29  Identities=34%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~  125 (340)
                      ||||.|+.| +|+.+++.|...|  ++..+|.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~~   31 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG--NLIALDV   31 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS--EEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC--CEEEEEC
Confidence            699999755 9999999998776  5555553

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.1  Score=45.05  Aligned_cols=29  Identities=24%  Similarity=0.462  Sum_probs=27.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           96 ILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |+|||+|-.|..+|..|++.|. +++|+|.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            8999999999999999999997 7999984

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.75  E-value=0.12  Score=41.02  Aligned_cols=32  Identities=25%  Similarity=0.504  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIV  123 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lv  123 (340)
                      ..++|+|||.|-+|..+|..+.+.|..+++++
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            35689999999999999999999999999986

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.68  E-value=0.095  Score=45.11  Aligned_cols=37  Identities=16%  Similarity=0.362  Sum_probs=32.7

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .|++++|+|-|.|-+|+.+|+.|...|..-+++-|.+
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            6899999999999999999999999997766666643

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=1.3  Score=38.33  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=26.3

Q ss_pred             CcE-EEEcCCh-hHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSI-LVIGAGG-LGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~V-lVvG~Gg-lGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|| ||.|+.| +|+.+++.|...|. ++..+|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            578 8889877 99999999999996 56667753

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=90.55  E-value=0.026  Score=44.51  Aligned_cols=84  Identities=13%  Similarity=0.072  Sum_probs=43.7

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcE-EEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513           96 ILVIGAGGLGSPALLYLAACGVGRL-GIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT  174 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg~i-~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~  174 (340)
                      |.+||+|-+|..++++|...+  ++ .+++          |+         ..|++.++    +.....          .
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~--~~~~v~~----------R~---------~~~~~~l~----~~~~~~----------~   46 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRY--EIGYILS----------RS---------IDRARNLA----EVYGGK----------A   46 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC------CCCEEC----------SS---------HHHHHHHH----HHTCCC----------C
T ss_pred             EEEEeCcHHHHHHHHHHHhCC--CEEEEEe----------CC---------hhhhcchh----hccccc----------c
Confidence            578999999999999986533  22 2322          11         23343433    332211          0


Q ss_pred             ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .+..+.++..|+||.|+.+......+++.. ..+..+|+.+
T Consensus        47 ~~~~~~~~~~DiVil~v~d~~i~~v~~~l~-~~~~ivi~~s   86 (153)
T d2i76a2          47 ATLEKHPELNGVVFVIVPDRYIKTVANHLN-LGDAVLVHCS   86 (153)
T ss_dssp             CSSCCCCC---CEEECSCTTTHHHHHTTTC-CSSCCEEECC
T ss_pred             cchhhhhccCcEEEEeccchhhhHHHhhhc-ccceeeeecc
Confidence            112345678999999997655554444432 2456677754

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.54  E-value=0.15  Score=42.09  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=30.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      -|+|||+|+.|-.+|.++++.|-.++.|+|...+
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            3899999999999999999999889999987654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.24  E-value=0.12  Score=42.71  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ....|+|||+|..|..+|.++++.|. +++|||.+.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            35679999999999999999999995 689998764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.53  Score=40.27  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=30.1

Q ss_pred             ccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |++++|+|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~   47 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARS   47 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            899999999865 699999999999995 68887643

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.21  E-value=0.78  Score=38.72  Aligned_cols=78  Identities=13%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             cEEEE-c-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVI-G-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVv-G-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .|+|| | .+|+|.++|+.|+..|.. +.+.|...                  ..+.+.+++.+++...  ++..+..++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~~------------------~~~~~~~~~~~~~~g~--~~~~~~~Dv   60 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARS------------------AKAAEEVSKQIEAYGG--QAITFGGDV   60 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHHTC--EEEEEECCT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC------------------HHHHHHHHHHHHHcCC--cEEEEeCCC
Confidence            46566 4 667999999999999964 65655321                  1246667777776653  455566666


Q ss_pred             Cccc-H-------HhhcccCcEEEEcCCC
Q 019513          173 RTSN-A-------LEILSQYEIVVDATDN  193 (340)
Q Consensus       173 ~~~~-~-------~~~l~~~DlVi~~tD~  193 (340)
                      +..+ .       .+.+...|++|.+...
T Consensus        61 ~~~~~v~~~~~~~~~~~g~iDiLVnnAg~   89 (244)
T d1edoa_          61 SKEADVEAMMKTAIDAWGTIDVVVNNAGI   89 (244)
T ss_dssp             TSHHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCcccccccc
Confidence            5422 1       2233568888877643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.16  E-value=0.14  Score=45.10  Aligned_cols=36  Identities=19%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             ccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .+++||+|.|+.| +|++++..|...|. ++..+|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            6899999999766 99999999999996 477777543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.14  Score=39.62  Aligned_cols=33  Identities=30%  Similarity=0.292  Sum_probs=27.3

Q ss_pred             CCcEEEEcCChhHHHHHHHHHH----cCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAA----CGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~----aGvg~i~lvD~D  126 (340)
                      .++|+|||.|.+|+++|..|++    .|+ ++++++..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEeccc
Confidence            5689999999999999999974    464 68888753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.15  Score=43.13  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D  126 (340)
                      .||++.++|.|++ |+|..+|+.|+..|. ++.++|.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~   38 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   38 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5889999999854 699999999999998 58888854

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=89.94  E-value=0.56  Score=39.07  Aligned_cols=92  Identities=17%  Similarity=0.148  Sum_probs=53.5

Q ss_pred             CCcEEEEcCChhHH-HHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC-ceEEEec
Q 019513           93 KSSILVIGAGGLGS-PALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST-VHIIEHR  169 (340)
Q Consensus        93 ~~~VlVvG~GglGs-~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~-v~i~~~~  169 (340)
                      .-+|.|||+|..|. .++..|... ++.-+.++|.+                   ..|++   ...++.+.. ..+..+ 
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~-------------------~~~a~---~~~~~~~i~~~~~~~~-   89 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN-------------------AEKAK---IVAAEYGVDPRKIYDY-   89 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC-------------------HHHHH---HHHHHTTCCGGGEECS-
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCC-------------------HHHHH---HHHHhhcccccccccc-
Confidence            45799999999996 455665544 33333455532                   22333   333333321 222222 


Q ss_pred             ccCCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          170 EALRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       170 ~~~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                           .+..+++  .+.|+|+.||.+ ..+..+...|.+.|++++.
T Consensus        90 -----~d~~ell~~~~iD~V~I~tp~-~~H~~~~~~al~~gk~v~~  129 (221)
T d1h6da1          90 -----SNFDKIAKDPKIDAVYIILPN-SLHAEFAIRAFKAGKHVMC  129 (221)
T ss_dssp             -----SSGGGGGGCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEE
T ss_pred             -----Cchhhhcccccceeeeeccch-hhhhhHHHHhhhcchhhhc
Confidence                 2233444  358999988875 5666677778889998875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.11  Score=45.53  Aligned_cols=30  Identities=13%  Similarity=0.337  Sum_probs=27.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|+|||+|-.|+.+|..|+..|. +++|+|.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk   32 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEK   32 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEEC
Confidence            58999999999999999999994 6889885

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.92  E-value=0.13  Score=42.04  Aligned_cols=30  Identities=23%  Similarity=0.410  Sum_probs=27.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      =|+|||+|..|..+|.++++.|. ++.|||.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~-kV~vie~   34 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGF-KTTCIEK   34 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            48999999999999999999996 5888875

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=89.84  E-value=0.14  Score=43.56  Aligned_cols=37  Identities=22%  Similarity=0.139  Sum_probs=31.2

Q ss_pred             cccCCcEEEEcC-C--hhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           90 NLLKSSILVIGA-G--GLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        90 ~L~~~~VlVvG~-G--glGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .|++++|+|.|+ |  |+|.++|+.|++.|. ++.|.+.|.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCCh
Confidence            588999999996 4  599999999999996 588877654

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.82  E-value=0.26  Score=40.11  Aligned_cols=92  Identities=15%  Similarity=0.227  Sum_probs=54.8

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        95 ~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      ||.|+|+.| +|.++++.|...-  ++.|+             ++++.+..|++=        .+..|+..   ....+.
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP--~~ei~-------------~l~s~~~aG~~i--------~~~~p~~~---~~~~~~   56 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHP--EAKIT-------------YLSSRTYAGKKL--------EEIFPSTL---ENSILS   56 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCT--TEEEE-------------EEECSTTTTSBH--------HHHCGGGC---CCCBCB
T ss_pred             EEEEECCCcHHHHHHHHHHHhCC--CceEE-------------EeeccccCCCcc--------cccCchhh---cccccc
Confidence            799999877 7999999998643  45543             233444566532        23333321   011122


Q ss_pred             cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      ..+..++.+++|+|+.|+.+-.....+..   ..++.+|+.+
T Consensus        57 ~~~~~~~~~~~dvvf~a~p~~~s~~~~~~---~~~~~VIDlS   95 (176)
T d1vkna1          57 EFDPEKVSKNCDVLFTALPAGASYDLVRE---LKGVKIIDLG   95 (176)
T ss_dssp             CCCHHHHHHHCSEEEECCSTTHHHHHHTT---CCSCEEEESS
T ss_pred             ccCHhHhccccceEEEccccHHHHHHHHh---hccceEEecC
Confidence            23334455689999999998776655442   2456666633

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.71  E-value=0.59  Score=39.49  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=29.5

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      |++++++|.|+ +|+|..+|+.|+..|. ++.++|.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRT   38 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            78899999986 4699999999999995 58887743

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.44  E-value=0.16  Score=41.69  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=27.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      -|+|||+|+.|..+|.++++.|. ++.|+|.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~   36 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEK   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            48999999999999999999996 6888874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.40  E-value=0.19  Score=42.37  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=31.3

Q ss_pred             ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      |++++|+|-|+ +|+|..+|+.|+..|. ++.+.|.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            78999999986 5799999999999996 588888654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.38  E-value=0.24  Score=40.16  Aligned_cols=31  Identities=29%  Similarity=0.239  Sum_probs=25.9

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 019513           94 SSILVIG-AGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        94 ~~VlVvG-~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .+|+|.| +|++|+.++...-..|...+..++
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~   63 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGIC   63 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceeccc
Confidence            5699998 599999999988889998877654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.36  E-value=0.16  Score=42.86  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ...|+|||+|..|..+|..|++.|. ++.|+|..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~   36 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNG   36 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            3569999999999999999999996 58899854

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=89.30  E-value=0.15  Score=43.51  Aligned_cols=28  Identities=32%  Similarity=0.464  Sum_probs=25.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEE
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGI  122 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~l  122 (340)
                      -|+|||+|..|+++|.+.+++|.+.+.|
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktlli   31 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLL   31 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            4899999999999999999999987755

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.13  E-value=0.35  Score=38.81  Aligned_cols=108  Identities=20%  Similarity=0.183  Sum_probs=54.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      -+|+|+|+|.+|+.+++.|....= .+.+   ..+-..|..+. ++..+-+.........+.+......        ...
T Consensus         5 i~I~l~G~G~VG~~l~~~l~~~~~-~l~~---~v~~i~~s~~~-~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~   71 (168)
T d1ebfa1           5 VNVAVIGAGVVGSAFLDQLLAMKS-TITY---NLVLLAEAERS-LISKDFSPLNVGSDWKAALAASTTK--------TLP   71 (168)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCC-SSEE---EEEEEECSSBE-EECSSCSCCSCTTCHHHHHHTCCCB--------CCC
T ss_pred             EEEEEEeCCHHHHHHHHHHHHhHH-Hhhh---heEEEEEeeee-eecccccchHhhhhhhhhhhhcccc--------ccc
Confidence            369999999999999999986431 1111   11222222221 2222112111111122222221110        001


Q ss_pred             cccHHh---hcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          174 TSNALE---ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       174 ~~~~~~---~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                      .+...+   .....++++||+.+.+....+. .+.+.|+.+|.+.
T Consensus        72 ~~~~~~~~~~~~~~~vivd~t~~~~~~~~~~-~aL~~G~hVVTAN  115 (168)
T d1ebfa1          72 LDDLIAHLKTSPKPVILVDNTSSAYIAGFYT-KFVENGISIATPN  115 (168)
T ss_dssp             HHHHHHHHTTCSSCEEEEECSCCHHHHTTHH-HHHHTTCEEECCC
T ss_pred             HHHHHHHhccCCCceEEEEecCChHHHHHHH-HHHHcCCeEEecC
Confidence            111111   1234689999999877654444 4788999998765

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.99  E-value=0.18  Score=41.79  Aligned_cols=29  Identities=31%  Similarity=0.540  Sum_probs=26.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           96 ILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      |+|||+|+.|..+|.+|++.|. ++.|||.
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~   37 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVER   37 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEec
Confidence            8999999999999999999996 6888874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=88.91  E-value=0.59  Score=37.73  Aligned_cols=89  Identities=12%  Similarity=0.180  Sum_probs=55.8

Q ss_pred             cccC-CcEEEE--cCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           90 NLLK-SSILVI--GAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        90 ~L~~-~~VlVv--G~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      +++. .+|+|+  |.|++|..+....-..|+..|.++..                    ..+.+...+.++++.-+.-|.
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~--------------------~~~~~~~~~~~~~lGad~vi~   84 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRD--------------------RPNLDEVVASLKELGATQVIT   84 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECC--------------------CTTHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEec--------------------ccccchHHhhhhhccccEEEe
Confidence            3444 579998  56889999998888999987777642                    235566777778876555443


Q ss_pred             EecccCCc--ccHHhh----cccCcEEEEcCCChhhHH
Q 019513          167 EHREALRT--SNALEI----LSQYEIVVDATDNAPSRY  198 (340)
Q Consensus       167 ~~~~~~~~--~~~~~~----l~~~DlVi~~tD~~~~r~  198 (340)
                      .......+  +...++    -.+.|+|+|++.......
T Consensus        85 ~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~  122 (189)
T d1gu7a2          85 EDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTG  122 (189)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHH
T ss_pred             ccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhh
Confidence            32222111  111222    246899999988655443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.79  E-value=0.21  Score=43.10  Aligned_cols=35  Identities=23%  Similarity=0.511  Sum_probs=30.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      .-|+|||.|..|..+|..|++.|. ++.|||...+-
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~~~   51 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVI   51 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCC
Confidence            359999999999999999999996 58999976653

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.78  E-value=0.8  Score=35.86  Aligned_cols=45  Identities=11%  Similarity=0.189  Sum_probs=29.0

Q ss_pred             hcccCcEEEEcCCChhhHHHHHHHHHHcC--CcEEE-EeecCceeEEEE
Q 019513          180 ILSQYEIVVDATDNAPSRYMISDCCVVLG--KPLVS-GAALGLEGQLTV  225 (340)
Q Consensus       180 ~l~~~DlVi~~tD~~~~r~~i~~~~~~~~--~p~i~-~~~~g~~G~i~v  225 (340)
                      .++++|+++.|+.+-.++.+...+. +.|  +++|+ .+.+++.-.+-.
T Consensus        62 ~~~~~DivF~a~~~~~s~~~~~~~~-~~g~~~~VID~Ss~fR~~~dvpl  109 (146)
T d1t4ba1          62 ALKALDIIVTCQGGDYTNEIYPKLR-ESGWQGYWIDAASSLRMKDDAII  109 (146)
T ss_dssp             HHHTCSEEEECSCHHHHHHHHHHHH-HTTCCCEEEECSSTTTTCTTEEE
T ss_pred             hhhcCcEEEEecCchHHHHhhHHHH-hcCCCeecccCCcccccCCCCcE
Confidence            4678999999998777766655544 444  45777 344555544433

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.74  E-value=2.4  Score=36.69  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ++++|+|+|+ |.+|+.+++.|...|.. ++++-          |.       ....+    +..+ ...+.+++..  .
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~-V~~l~----------R~-------~~~~~----~~~~-~~~~~v~~~~--g   56 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQV----------HS-------LKGLI----AEEL-QAIPNVTLFQ--G   56 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEE----------SC-------SCSHH----HHHH-HTSTTEEEEE--S
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCe-EEEEE----------CC-------cchhh----hhhh-cccCCCEEEE--e
Confidence            4689999997 56999999999999964 44431          21       11111    1222 2234555443  3


Q ss_pred             cCCc--ccHHhhcccCcEEEEcCCChh-----hHHHHHHHHHHcCC-cEEEE
Q 019513          171 ALRT--SNALEILSQYEIVVDATDNAP-----SRYMISDCCVVLGK-PLVSG  214 (340)
Q Consensus       171 ~~~~--~~~~~~l~~~DlVi~~tD~~~-----~r~~i~~~~~~~~~-p~i~~  214 (340)
                      ++..  +.....+...|.++.......     ....+.++|...++ .++..
T Consensus        57 D~~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~agv~~~v~~  108 (350)
T d1xgka_          57 PLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIY  108 (350)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred             eCCCcHHHHHHHhcCCceEEeecccccchhhhhhhHHHHHHHHhCCCceEEE
Confidence            3332  224456788888876654322     22335667777664 44443

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=88.65  E-value=0.32  Score=38.40  Aligned_cols=46  Identities=13%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             HhhcccCcEEEEcCCChhhHHHHHHHHHHcC--CcEEEE-eecCceeEEE
Q 019513          178 LEILSQYEIVVDATDNAPSRYMISDCCVVLG--KPLVSG-AALGLEGQLT  224 (340)
Q Consensus       178 ~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~--~p~i~~-~~~g~~G~i~  224 (340)
                      .+.++++|+|+.|+.+-.++.+...+ .+.+  .++|+. +.+++.-.+.
T Consensus        59 ~~~~~~~DvvF~alp~~~s~~~~~~l-~~~g~~~~VIDlSsdfR~~~dvp  107 (147)
T d1mb4a1          59 IESLKQLDAVITCQGGSYTEKVYPAL-RQAGWKGYWIDAASTLRMDKEAI  107 (147)
T ss_dssp             HHHHTTCSEEEECSCHHHHHHHHHHH-HHTTCCSEEEESSSTTTTCTTEE
T ss_pred             hhhhccccEEEEecCchHHHHHhHHH-HHcCCceEEEeCCccccccCCce
Confidence            34568899999999987777666554 4444  468874 4456655443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.52  Score=41.18  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+-|||| .|. ++..++++|..+++.+|..                    ..+..+++...+.+-.-++....
T Consensus        33 ~~~~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s--------------------~~~~~a~~~~~~~~~~~~i~~~~   90 (311)
T d2fyta1          33 IFKDKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQS--------------------EILYQAMDIIRLNKLEDTITLIK   90 (311)
T ss_dssp             GTTTCEEEEETCT-TSH-HHHHHHHTTCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEE
T ss_pred             cCCcCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCH--------------------HHHHHHHHHHHHhCCCccceEEE
Confidence            3578999999999 332 6778889999999998842                    12344555555555444555555


Q ss_pred             ccCCcccHHhhcccCcEEEE
Q 019513          170 EALRTSNALEILSQYEIVVD  189 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~  189 (340)
                      ..+..-.  .....+|+|+.
T Consensus        91 ~~~~~l~--~~~~~~D~Ivs  108 (311)
T d2fyta1          91 GKIEEVH--LPVEKVDVIIS  108 (311)
T ss_dssp             SCTTTSC--CSCSCEEEEEE
T ss_pred             eeHHHhc--CccccceEEEE
Confidence            4443211  11257999985

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=88.56  E-value=0.16  Score=44.29  Aligned_cols=31  Identities=29%  Similarity=0.451  Sum_probs=26.9

Q ss_pred             cEEEEcCChhHHHHHHHHH-----HcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLA-----ACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La-----~aGvg~i~lvD~D  126 (340)
                      -|+|||+|..|+.+|..|+     +.|+. ++|+|..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~   44 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKR   44 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCC
Confidence            4999999999999999997     57876 8899854

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.47  E-value=0.18  Score=44.31  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      ...|+|||+|..|-.+|..|.+.|+ .++|+|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            3469999999999999999999998 5888884

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.33  E-value=0.24  Score=40.32  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=27.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      -|+|||+|+.|..+|.++++.|. ++.|||...
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~-~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            48999999999999999999995 588888543

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.27  E-value=0.33  Score=41.30  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=50.0

Q ss_pred             cccCCcEEEEcC-ChhHHHHHHHHHHc---CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513           90 NLLKSSILVIGA-GGLGSPALLYLAAC---GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI  165 (340)
Q Consensus        90 ~L~~~~VlVvG~-GglGs~va~~La~a---Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i  165 (340)
                      .|+++.++|-|+ +|+|.++|+.|++.   | -++.++|.+                   ..|.+.+++.|...++..++
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G-~~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~   62 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARS-------------------ESMLRQLKEELGAQQPDLKV   62 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESC-------------------HHHHHHHHHHHHHHCTTSEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCC-CEEEEEECC-------------------HHHHHHHHHHHHhhcCCceE
Confidence            355665566576 57999999999974   4 367776632                   35778888999999999999


Q ss_pred             EEecccCCcc
Q 019513          166 IEHREALRTS  175 (340)
Q Consensus       166 ~~~~~~~~~~  175 (340)
                      ..+..+++..
T Consensus        63 ~~~~~Dvs~~   72 (259)
T d1oaaa_          63 VLAAADLGTE   72 (259)
T ss_dssp             EEEECCTTSH
T ss_pred             EEEEccCCCH
Confidence            9988888753

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=88.24  E-value=0.21  Score=43.64  Aligned_cols=40  Identities=23%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN  132 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sN  132 (340)
                      +..-|+|||.|..|..+|.+|++.|. ++.|++.+.+.-+|
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~~~~g~   43 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLIPVKRSH   43 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCGGGSG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCCCCCCc
Confidence            44559999999999999999999997 59999987775444

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.61  Score=37.64  Aligned_cols=77  Identities=14%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .|++++|+|||.+. +|.+++..|...| ..+++++.++                                         
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~g-atVt~~~~~t-----------------------------------------   73 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSKT-----------------------------------------   73 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTC-----------------------------------------
T ss_pred             ccccceEEEEecCCccchHHHHHHHhcc-CceEEEeccc-----------------------------------------
Confidence            48899999999988 7999999999998 4566665322                                         


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL  217 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~  217 (340)
                            .+..+..+++|+||.++..+..   +..-..+.+..+|+++..
T Consensus        74 ------~~l~~~~~~aDivi~a~G~~~~---i~~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          74 ------AHLDEEVNKGDILVVATGQPEM---VKGEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             ------SSHHHHHTTCSEEEECCCCTTC---BCGGGSCTTCEEEECCCB
T ss_pred             ------ccHHHHHhhccchhhccccccc---cccccccCCCeEeccCcc
Confidence                  2334556778898888877552   333345566777776643

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.80  E-value=0.26  Score=41.17  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVV  128 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~V  128 (340)
                      .+|+|||.|+.|-.+|.+.+++|..  ++.++|.+.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            4799999999999999999999975  5788887543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.62  E-value=0.072  Score=41.05  Aligned_cols=87  Identities=20%  Similarity=0.149  Sum_probs=54.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           94 SSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      -+|+|+|+|.+|..++.+|-. .|..=+.++|.|.   +..++++.                       .+.|..     
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~---~k~G~~I~-----------------------Gi~V~~-----   52 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP---EKVGRPVR-----------------------GGVIEH-----   52 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT---TTTTCEET-----------------------TEEEEE-----
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch---HhcCCEEC-----------------------CEEEec-----
Confidence            489999999999999987753 4666788899874   22333321                       122321     


Q ss_pred             CcccHHhhc-ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513          173 RTSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVLGKPLVS  213 (340)
Q Consensus       173 ~~~~~~~~l-~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~  213 (340)
                       .+...+++ +..++++.++.. ..+..|.+.|.+.|++-|.
T Consensus        53 -~~~l~~~~~~~i~iai~~i~~-~~~~~I~d~l~~~gIk~I~   92 (126)
T d2dt5a2          53 -VDLLPQRVPGRIEIALLTVPR-EAAQKAADLLVAAGIKGIL   92 (126)
T ss_dssp             -GGGHHHHSTTTCCEEEECSCH-HHHHHHHHHHHHHTCCEEE
T ss_pred             -HHHHHHHHhhcccEEEEeCCH-HHHHHHHHHHHHcCCCEEe
Confidence             12223333 345677777664 4445577788889987443

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=0.28  Score=39.55  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=33.3

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      -|..++|+|+|.|-+|..+|..|...| .++.++|.|.+
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G-~~V~v~e~dp~   58 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFG-ARVIITEIDPI   58 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCC-CeeEeeecccc
Confidence            378899999999999999999999999 46888887753

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.35  E-value=0.28  Score=40.08  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=57.5

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      ..+.+++|.|+|.|.+|..+++.|..-|. ++..+|.-.                   .+.. .    ...  .+     
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~-------------------~~~~-~----~~~--~~-----   87 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYV-------------------SPAR-A----AQL--GI-----   87 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS-------------------CHHH-H----HHH--TC-----
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccc-eEEeecCCC-------------------ChhH-H----hhc--Cc-----
Confidence            35789999999999999999999998885 455555311                   0100 0    011  11     


Q ss_pred             cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513          169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA  215 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~  215 (340)
                          ...+..++++.+|+|+.+.. +.+++.+|+......   +.-+|+.+
T Consensus        88 ----~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~s  134 (184)
T d1ygya1          88 ----ELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA  134 (184)
T ss_dssp             ----EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             ----eeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEec
Confidence                11345678888998877654 566787877654443   33455544

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.29  E-value=0.46  Score=40.93  Aligned_cols=32  Identities=28%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCC
Q 019513           94 SSILVIGAGG-LGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++|+|.|+.| +|+.+++.|...|. ++..+|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECC
Confidence            5899999766 99999999999985 45556643

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.99  E-value=0.64  Score=40.97  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=50.9

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR  169 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~  169 (340)
                      .+++++|+-||||. | .++..++++|..+++.+|..                    +.++.+++..++.+..-++..+.
T Consensus        36 ~~~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s--------------------~~~~~a~~~~~~~~~~~~i~~i~   93 (328)
T d1g6q1_          36 LFKDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMS--------------------SIIEMAKELVELNGFSDKITLLR   93 (328)
T ss_dssp             HHTTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEE
T ss_pred             cCCcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCC--------------------HHHHHHHHHHHHhCccccceEEE
Confidence            35889999999994 3 35678889999999998842                    13556667777766665666555


Q ss_pred             ccCCcccHHhhcccCcEEEE
Q 019513          170 EALRTSNALEILSQYEIVVD  189 (340)
Q Consensus       170 ~~~~~~~~~~~l~~~DlVi~  189 (340)
                      ..+..-...  -..+|+|+.
T Consensus        94 ~~~~~l~~~--~~~~D~i~s  111 (328)
T d1g6q1_          94 GKLEDVHLP--FPKVDIIIS  111 (328)
T ss_dssp             SCTTTSCCS--SSCEEEEEE
T ss_pred             eehhhccCc--ccceeEEEE
Confidence            544321110  146898885

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.96  E-value=2  Score=35.63  Aligned_cols=78  Identities=13%  Similarity=0.219  Sum_probs=47.6

Q ss_pred             EEEE-c-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513           96 ILVI-G-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR  173 (340)
Q Consensus        96 VlVv-G-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~  173 (340)
                      |+|| | .+|+|..+|+.|+..|. ++.+.|.+.                  ..+++.+++.+.+..+.-.+........
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHS------------------EGAAQRLVAELNAARAGSAVLCKGDLSL   63 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHHSTTCEEEEECCCSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc------------------hHHHHHHHHHHHhhcCCceEEEeccccc
Confidence            5455 5 56799999999999996 688877332                  2345667777777766544333222211


Q ss_pred             c----c-------cHHhhcccCcEEEEcCC
Q 019513          174 T----S-------NALEILSQYEIVVDATD  192 (340)
Q Consensus       174 ~----~-------~~~~~l~~~DlVi~~tD  192 (340)
                      .    +       ...+.+...|++|.+..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~g~iDilvnnAG   93 (266)
T d1mxha_          64 SSSLLDCCEDIIDCSFRAFGRCDVLVNNAS   93 (266)
T ss_dssp             STTHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             chhHHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            1    1       11223356888887754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.63  E-value=0.31  Score=41.95  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=29.9

Q ss_pred             cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513           90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~  125 (340)
                      .|++++++|.|++   |+|..+|+.|++.|.. +.|.|.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~   42 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTW   42 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            4899999999986   7999999999999965 666653

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.57  E-value=0.27  Score=40.93  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=30.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      -|+|||+|+.|-.+|.++++.|..++.|+|.+..
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            4899999999999999999999999999987653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=86.39  E-value=0.28  Score=42.00  Aligned_cols=38  Identities=21%  Similarity=0.426  Sum_probs=31.9

Q ss_pred             HHHcccCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeC
Q 019513           87 GQSNLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDH  125 (340)
Q Consensus        87 ~q~~L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~  125 (340)
                      .+.+....-|+|||+|..|..+|..|++ .|. +++|+|.
T Consensus        27 ~~~~~~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~   65 (278)
T d1rp0a1          27 DMITYAETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQ   65 (278)
T ss_dssp             HHHHHTEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEES
T ss_pred             ccccccCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEec
Confidence            3446667889999999999999999997 697 5888884

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.37  E-value=0.53  Score=34.52  Aligned_cols=32  Identities=16%  Similarity=0.240  Sum_probs=27.1

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHHcCCCcE
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRL  120 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i  120 (340)
                      ..+++++|+|||.|.-|..+|..|+..+-..+
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~   59 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPI   59 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSE
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEE
Confidence            46899999999999999999999987764433

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.27  E-value=0.26  Score=40.73  Aligned_cols=31  Identities=23%  Similarity=0.284  Sum_probs=26.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -|+|||+|+.|..+|.++++.|.+ +.|+|..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~k-V~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKK-VMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCC-EEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEecc
Confidence            389999999999999999999965 7777743

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.05  E-value=0.38  Score=40.71  Aligned_cols=32  Identities=25%  Similarity=0.418  Sum_probs=28.7

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        96 VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      |+|||+|..|..+|..+++.|. ++.|||.+.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~~~   35 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKSRL   35 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSST
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            7999999999999999999996 6889997654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.04  E-value=0.15  Score=40.03  Aligned_cols=28  Identities=29%  Similarity=0.638  Sum_probs=25.2

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGR  119 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~  119 (340)
                      ..++|+|||.|.+|+.+|..+++.|...
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            4679999999999999999999999754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.89  E-value=0.3  Score=38.57  Aligned_cols=30  Identities=30%  Similarity=0.677  Sum_probs=26.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      -|+|||.|..|..+|.++++.|.. +.|||.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEE
Confidence            389999999999999999999975 777774

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.69  E-value=1.5  Score=33.34  Aligned_cols=36  Identities=28%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             ccCCcEEEEcC----ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           91 LLKSSILVIGA----GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        91 L~~~~VlVvG~----GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      ++-++|+|||+    +..|..++++|...|-++|..|.+.
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~   45 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK   45 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC
Confidence            56689999998    5689999999987776789887653

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=85.64  E-value=1.4  Score=39.39  Aligned_cols=77  Identities=18%  Similarity=0.210  Sum_probs=55.1

Q ss_pred             cCCcEEEEcCChhHHHHHHHH-HHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGGLGSPALLYL-AACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~L-a~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ..+++.|||+|.-+-.-++.+ ...++.+|.++|.+                   ..+++..++.+++ .+.+++...  
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~-------------------~~~~~~~~~~l~~-~~g~~v~~~--  184 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD-------------------PLATAKLIANLKE-YSGLTIRRA--  184 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHTT-CTTCEEEEC--
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecC-------------------hHHHHHHHHhhhh-ccCCCceec--
Confidence            347899999999988777765 56789999998744                   2456666666654 445665443  


Q ss_pred             cCCcccHHhhcccCcEEEEcCCCh
Q 019513          171 ALRTSNALEILSQYEIVVDATDNA  194 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~  194 (340)
                          ++..+.++++|+|+.||-+.
T Consensus       185 ----~s~~eav~~ADIi~t~Tas~  204 (340)
T d1x7da_         185 ----SSVAEAVKGVDIITTVTADK  204 (340)
T ss_dssp             ----SSHHHHHTTCSEEEECCCCS
T ss_pred             ----CCHHHHHhcCCceeeccccC
Confidence                34567789999999888653

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.44  E-value=0.37  Score=41.15  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=32.2

Q ss_pred             HcccCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCC
Q 019513           89 SNLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHD  126 (340)
Q Consensus        89 ~~L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D  126 (340)
                      ..|++++|+|-|.|-+|..+|++|.. .|..-+++.|.+
T Consensus        28 ~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          28 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            34899999999999999999999986 587777777754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.43  E-value=0.48  Score=39.70  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=29.4

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      ++++|+|.|+ ||+|.++++.|+..|. ++.++|...-
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            4688999986 5699999999999997 5777875443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.16  E-value=0.89  Score=38.18  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=46.6

Q ss_pred             HcccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCccc-HHHHHHHHHhhCCCceEE
Q 019513           89 SNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSK-VKSAAATCRSINSTVHII  166 (340)
Q Consensus        89 ~~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~K-a~~a~~~L~~lnp~v~i~  166 (340)
                      -.|++++|+|-|++ |+|.++|+.|+..|. ++.++|.+.-...++    +.-..|+.... ++.+.+.+.+.+..+.+-
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~----~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiL   77 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGL----FGVEVDVTDSDAVDRAFTAVEEHQGPVEVL   77 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTS----EEEECCTTCHHHHHHHHHHHHHHHSSCSEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCc----eEEEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence            35889999999865 699999999999995 688888765443332    22233554432 344444444443334433


Q ss_pred             E
Q 019513          167 E  167 (340)
Q Consensus       167 ~  167 (340)
                      .
T Consensus        78 V   78 (237)
T d1uzma1          78 V   78 (237)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.16  E-value=0.69  Score=38.67  Aligned_cols=55  Identities=25%  Similarity=0.257  Sum_probs=37.3

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513           95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII  166 (340)
Q Consensus        95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~  166 (340)
                      ||+|.|+ |-+|+.+++.|...|. ++..+|...++              +  .-.+.+.+.++...|++-++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~D--------------~--~d~~~~~~~l~~~~~d~vih   58 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLD--------------I--TNVLAVNKFFNEKKPNVVIN   58 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCC--------------T--TCHHHHHHHHHHHCCSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhcc--------------C--CCHHHHHHHHHHcCCCEEEe
Confidence            6999998 6699999999999886 45556543322              2  12345566777777765443

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.16  E-value=0.32  Score=39.80  Aligned_cols=35  Identities=17%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD  124 (340)
                      .+++++|+|||+|-.|..+|..|+..+.....+.-
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            57899999999999999999999999977665543

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=85.10  E-value=2  Score=32.39  Aligned_cols=110  Identities=15%  Similarity=0.182  Sum_probs=75.5

Q ss_pred             cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      +++||+|-|. |.-|+.-++.....|-.-+.=|-+..=-           ..-.|.|=-.+.++.+++.++++.+...+-
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG-----------~~~~giPVf~sV~eAv~~~~~~~SvIfVPp   73 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG-----------TTHLGLPVFNTVREAVAATGATASVIYVPA   73 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTT-----------EEETTEEEESSHHHHHHHHCCCEEEECCCG
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCC-----------cccCCCchhhHHHHHHHHhCCCeEEEeccH
Confidence            5789999998 8899999999999986433333222211           112355555677888888888888877766


Q ss_pred             cCCcccHHhhc-ccCcEEEEcCCChhhHHH--HHHHHHHcCCcEE
Q 019513          171 ALRTSNALEIL-SQYEIVVDATDNAPSRYM--ISDCCVVLGKPLV  212 (340)
Q Consensus       171 ~~~~~~~~~~l-~~~DlVi~~tD~~~~r~~--i~~~~~~~~~p~i  212 (340)
                      .+..+...+.+ .+..+|+.-|...+.+..  +..++...+.-+|
T Consensus        74 ~~a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          74 PFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence            65544444444 568899989998887654  6677777776554

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.96  E-value=0.35  Score=42.77  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=27.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      -|+|||.|..|+.+|..|+.+|. ++.+++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGV-QTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcC-eEEEEecC
Confidence            38999999999999999999997 58888853

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.78  E-value=1.2  Score=34.84  Aligned_cols=90  Identities=17%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcC--CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           94 SSILVIGAGG-LGSPALLYLAACG--VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aG--vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      -+|.|||+.| +|.++.+.|....  +.++..+..               .+..|+.-        ....+......   
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s---------------~~s~G~~~--------~~~~~~~~~~~---   55 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS---------------ARSAGKSL--------KFKDQDITIEE---   55 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC---------------GGGTTCEE--------EETTEEEEEEE---
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc---------------cccccccc--------cccCCcccccc---
Confidence            3799999955 8999999998885  345554432               22344321        01111111111   


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA  215 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~  215 (340)
                       .    ....+.+.|+++.++.+..+..+.. .....++.+|+.+
T Consensus        56 -~----~~~~~~~~d~~f~~~~~~~s~~~~~-~~~~~~~~VIDlS   94 (154)
T d2gz1a1          56 -T----TETAFEGVDIALFSAGSSTSAKYAP-YAVKAGVVVVDNT   94 (154)
T ss_dssp             -C----CTTTTTTCSEEEECSCHHHHHHHHH-HHHHTTCEEEECS
T ss_pred             -c----chhhhhhhhhhhhccCccchhhHHh-hhccccceehhcC
Confidence             1    1223467899999988766655544 4556788888854

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.74  E-value=0.37  Score=39.79  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcc
Q 019513           93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVV  128 (340)
Q Consensus        93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~V  128 (340)
                      ..+++|||+|..|.++|..|.+.|. ++|++++.+..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3568999999999999999998887 58999986543

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.72  E-value=0.43  Score=40.58  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D  126 (340)
                      .|++++|+|-|.|-+|+.+|+.|+. .|..-+++.|.+
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~   65 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR   65 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETT
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCC
Confidence            5889999999999999999999985 588777776654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.65  E-value=0.49  Score=40.19  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             cccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +|+++.|+|-| .+|+|..+|+.|+..|. ++.+.|.+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~   38 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLR   38 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            47889999998 55799999999999996 68888753

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=84.61  E-value=0.48  Score=41.37  Aligned_cols=42  Identities=17%  Similarity=0.353  Sum_probs=35.9

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNM  133 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL  133 (340)
                      .+.-|+|||.|..|..+|..++..|.+ ++.|++...+.-+|-
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            346799999999999999999999887 799999877766664

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.46  E-value=0.41  Score=41.62  Aligned_cols=34  Identities=21%  Similarity=0.518  Sum_probs=29.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV  128 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V  128 (340)
                      .-|+|||+|..|..+|..|+..|.+ +.|++....
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~-V~llEk~~~   57 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAK-VILLEKEPI   57 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCC-EEEECSSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence            4599999999999999999999964 888886654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=84.45  E-value=1.8  Score=36.48  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             cEEEE-c-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513           95 SILVI-G-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL  172 (340)
Q Consensus        95 ~VlVv-G-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~  172 (340)
                      .|+|| | .+|+|.++|+.|+..|. ++.|.|..                  ...+++.+++.|...++...+......-
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~d~~   63 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHR------------------SAAEANALSATLNARRPNSAITVQADLS   63 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHHHSTTCEEEEECCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC------------------CHHHHHHHHHHHHhhcCCceEEEEeecc
Confidence            47777 4 56899999999999996 46665521                  2356888889999888765443322111


Q ss_pred             CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCc
Q 019513          173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKP  210 (340)
Q Consensus       173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p  210 (340)
                      ....  ....-.+...|.++....+.++.++..++|..
T Consensus        64 ~~~~--~~~~~~~~~~dv~~~~~v~~~~~~~~~~~G~i   99 (284)
T d1e7wa_          64 NVAT--APVSGADGSAPVTLFTRCAELVAACYTHWGRC   99 (284)
T ss_dssp             SSCB--CCCC----CCCBCHHHHHHHHHHHHHHHHSCC
T ss_pred             cccc--cccccccccccCCCHHHHHHHHHHHHHHhCCC
Confidence            1110  01122333444455455566677776666643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=84.43  E-value=0.92  Score=36.41  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=52.2

Q ss_pred             cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513           90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH  168 (340)
Q Consensus        90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~  168 (340)
                      .+.+++|+|||-+. +|.+++..|...|. .+++++..+                                         
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t-----------------------------------------   71 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT-----------------------------------------   71 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC-----------------------------------------
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhc-ccccccccc-----------------------------------------
Confidence            57899999999988 79999999999985 356654211                                         


Q ss_pred             cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513          169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA  216 (340)
Q Consensus       169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~  216 (340)
                            .+..+.++++|+||.++..+..   |..--.+.+.-+|+++.
T Consensus        72 ------~~l~~~~~~ADivI~a~G~p~~---i~~~~vk~g~vvIDvGi  110 (166)
T d1b0aa1          72 ------KNLRHHVENADLLIVAVGKPGF---IPGDWIKEGAIVIDVGI  110 (166)
T ss_dssp             ------SCHHHHHHHCSEEEECSCCTTC---BCTTTSCTTCEEEECCC
T ss_pred             ------chhHHHHhhhhHhhhhccCccc---ccccccCCCcEEEecCc
Confidence                  2345566789999998886542   22222345556666653

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.34  E-value=1.2  Score=35.16  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=24.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcC-CCcEEEEeC
Q 019513           94 SSILVIGAGGLGSPALLYLAACG-VGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~  125 (340)
                      -+|+|||+|..|...+..|.... +..+.++|.
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~   40 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF   40 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            36999999999999888877543 455677663

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=83.93  E-value=0.35  Score=42.33  Aligned_cols=30  Identities=20%  Similarity=0.515  Sum_probs=27.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      -|+|||.|.-|+.+|..|+.+|. ++.+++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~-kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGY-KVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCC-eEEEEec
Confidence            38999999999999999999996 6888874

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.53  E-value=0.6  Score=36.25  Aligned_cols=36  Identities=14%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             ccCCcEEEE--cCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           91 LLKSSILVI--GAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        91 L~~~~VlVv--G~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      .-.+.|+|+  |.|-+|+++|..|+..|. +++||..+.
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            345667777  778899999999999994 799998654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=0.35  Score=34.03  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513           94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV  127 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~  127 (340)
                      ++|.|+|.|-||.-++..-.+.|+. +.++|+|.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence            5899999999999999999999976 77788764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=83.16  E-value=0.9  Score=36.21  Aligned_cols=31  Identities=23%  Similarity=0.179  Sum_probs=23.4

Q ss_pred             cCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEE
Q 019513           92 LKSSILVIGAG-GLGSPALLYLAACGVGRLGI  122 (340)
Q Consensus        92 ~~~~VlVvG~G-glGs~va~~La~aGvg~i~l  122 (340)
                      ++.+|+|.|++ ++|..++......|..-|.+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~   60 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGA   60 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEe
Confidence            35789998985 48888888888888755544

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=82.92  E-value=0.42  Score=41.93  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccC
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN  132 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sN  132 (340)
                      ++--|+|||.|..|..+|..+++.|. ++.|++...+.-+|
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~-~V~lleK~~~~gg~   45 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQ-TCALLSKVFPTRSH   45 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTC-CCEEECSSCGGGSG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCC-eEEEEeCCCCCCCc
Confidence            34459999999999999999999996 58999987765554

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.83  E-value=0.6  Score=40.60  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE  129 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  129 (340)
                      -|+|||+|..|..+|..|++.|. ++.|++...+.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~~~   54 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFS   54 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            49999999999999999999996 58888876554

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.69  E-value=0.74  Score=34.31  Aligned_cols=38  Identities=21%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccc
Q 019513           92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL  130 (340)
Q Consensus        92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~  130 (340)
                      ...||.|+|.|-||.-++....+.|+. +.++|++.-.+
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~~P   47 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYADAP   47 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTTCG
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCCCc
Confidence            346799999999999999999999975 67788765443

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=81.53  E-value=0.57  Score=41.35  Aligned_cols=30  Identities=40%  Similarity=0.516  Sum_probs=26.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513           95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~  125 (340)
                      -|+|||.|.-|+.+|..|+.+|. ++.+++.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~-~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGI-PTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            38999999999999999999996 5888874

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.39  E-value=0.75  Score=37.90  Aligned_cols=33  Identities=42%  Similarity=0.575  Sum_probs=27.3

Q ss_pred             CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513           93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD  126 (340)
Q Consensus        93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D  126 (340)
                      +++++|-|+ +|+|..+|+.|+..|. ++.+.|.+
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~   34 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLR   34 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            356777775 6799999999999996 68888865

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.33  E-value=1.8  Score=38.22  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 019513           94 SSILVIGAGG-LGSPALLYLAACGVGRLGIVDH  125 (340)
Q Consensus        94 ~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~  125 (340)
                      -||+|.|+.| +|+.+++.|...+=-+++++|.
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            4799999777 9999999998744357889884

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=80.63  E-value=0.72  Score=38.81  Aligned_cols=29  Identities=34%  Similarity=0.572  Sum_probs=26.1

Q ss_pred             EEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 019513           96 ILVIGAGG-LGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        96 VlVvG~Gg-lGs~va~~La~aGvg~i~lvD  124 (340)
                      |+|.|+.| +|+.+++.|...|...++.+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            78888766 899999999999988899987

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=80.39  E-value=1.7  Score=34.14  Aligned_cols=31  Identities=26%  Similarity=0.194  Sum_probs=23.7

Q ss_pred             CCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 019513           93 KSSILVIGAGG-LGSPALLYLAACGVGRLGIVD  124 (340)
Q Consensus        93 ~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD  124 (340)
                      +.+|+|.|+|| +|..++......|.. +..+|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~-Vi~~~   60 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAK-LIGTV   60 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCe-Eeecc
Confidence            56899997666 899888888889975 44443

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.24  E-value=0.67  Score=41.85  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=27.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHH------cCCCcEEEEeCC
Q 019513           94 SSILVIGAGGLGSPALLYLAA------CGVGRLGIVDHD  126 (340)
Q Consensus        94 ~~VlVvG~GglGs~va~~La~------aGvg~i~lvD~D  126 (340)
                      .-|+|||+|..|+.+|..|++      .|+. +.|+|..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~-VlllEK~   70 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLR-VCLVEKA   70 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCC-EEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCE-EEEEcCC
Confidence            469999999999999999998      6765 7787744

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.09  E-value=1.1  Score=38.78  Aligned_cols=36  Identities=22%  Similarity=0.474  Sum_probs=29.4

Q ss_pred             cccCCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCC
Q 019513           90 NLLKSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHD  126 (340)
Q Consensus        90 ~L~~~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D  126 (340)
                      .-.++.|+|||+|..|..+|.+|++.  |. +++|+|..
T Consensus        47 ~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~-~~~~~~~~   84 (311)
T d2gjca1          47 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESS   84 (311)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSS
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEEcC
Confidence            34567899999999999999999964  54 58888864

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=80.02  E-value=0.94  Score=36.56  Aligned_cols=86  Identities=17%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             cCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513           92 LKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE  170 (340)
Q Consensus        92 ~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~  170 (340)
                      ++-||.|+|+.| +|.++++.|...-  ++.|.             .+.+.+..|++-.        +..|+...  ...
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP--~~ei~-------------~l~S~~~aG~~~~--------~~~~~~~~--~~~   58 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHP--QFRIK-------------VMTADRKAGEQFG--------SVFPHLIT--QDL   58 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCS--SEEEE-------------EEECSTTTTSCHH--------HHCGGGTT--SCC
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCC--CceEE-------------EEeccccCCCccc--------cccccccc--ccc
Confidence            345799999877 7999999998763  34432             2334455666432        22222110  011


Q ss_pred             cCCcccHHhhcccCcEEEEcCCChhhHHHHHH
Q 019513          171 ALRTSNALEILSQYEIVVDATDNAPSRYMISD  202 (340)
Q Consensus       171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~  202 (340)
                      ..........+.+.|+|+.|+.+..++.+...
T Consensus        59 ~~~~~~~~~~~~~~Dvvf~alp~~~s~~~~~~   90 (183)
T d2cvoa1          59 PNLVAVKDADFSNVDAVFCCLPHGTTQEIIKG   90 (183)
T ss_dssp             CCCBCGGGCCGGGCSEEEECCSSSHHHHHHHT
T ss_pred             ccchhhhhhhhcccceeeeccccchHHHHHHH
Confidence            11112223445789999999998877766643