Citrus Sinensis ID: 019517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MLLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIGN
Secondary Structure (PSIPRED)
cccccHHHHHcccccccccEEEcccccccccEEEcEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHcccEEEEccccEEEEEEEEccccccccccccccccEEEEEEEcccEEEEEEEEcccccccccEEccEEEEcccccHHHHHHHHHHHccccEEEEEEEEEEEEcccccccEEEEEEEEEEccccccccccHHcccccEEEcccccccccccccccHHHHHHHHHHHHHccccccccEEcccccccccEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccEEcHHEcccccccccEEEcccEEEEcccccccccccccccccccEEccccccEcccEEEEEccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHcccEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEcccEEEEEEEccccccccccEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccHHHHHHcccccHHHHHHcccHcccHHHHHHHHHHHHHcccccccccccEcccccccccEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MLLSLMELKllgsksvsassifqnggttsssfrhgvsirfspqlcscrgvfprvsensylckigssifsrnlrvldffddeydgvvvdpkrlpsdpdaFASILRFSLIHWRRMNKKGiwlklplenaelvpIAVKegfkyhhaepeyLMLTywipdgpcvlpgnathqvgvggfvindnneVLVVQEKycnpafaglwklptgfidesEEIFKGAVREVkeetgvdtEFVEVIAFRHAhnvafqksDLFFICMlkplsteikvddleikgakwmpfmefvkqpliqgdcMFKKVIDICIARLRKRycglyphqlvsafdgqtsslyyndsdtqdtncign
Flexible Loop (DISEMBL)
MLLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGSSIFSRNLRVLDFFDDEYDGVVVDpkrlpsdpdaFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSlyyndsdtqdtncign
Low Complexity Region (SEG)
mllslmelkllgsksVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIGN
Disordered region (IsUnstruct)
*******************************FRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYY*************
Disordered Region (DISOPRED)
**********LGSKSVSASS***************************************************LRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDT********
Disordered Region (DISEMBL)
MLLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIGN
Disordered Region (DISPRO)
*LLSL*ELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSD*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q8L7W2	369	Nudix hydrolase 8 OS=Arab	yes	no	0.802	0.739	0.7	1e-114
Q94B74	278	Nudix hydrolase 2 OS=Arab	no	no	0.747	0.913	0.513	2e-70
Q6NPD7	277	Nudix hydrolase 10 OS=Ara	no	no	0.747	0.916	0.480	7e-68
Q9SJC6	302	Nudix hydrolase 5 OS=Arab	no	no	0.726	0.817	0.466	3e-60
Q9SU14	282	Nudix hydrolase 7 OS=Arab	no	no	0.752	0.907	0.469	3e-60
Q9SJC4	283	Nudix hydrolase 6 OS=Arab	no	no	0.729	0.876	0.466	8e-56
P53370	316	Nucleoside diphosphate-li	yes	no	0.670	0.721	0.344	3e-32
P70563	313	Nucleoside diphosphate-li	yes	no	0.670	0.728	0.344	6e-32
P13420	217	Nucleoside diphosphate-li	N/A	no	0.579	0.907	0.388	8e-32
Q8CH40	313	Nucleoside diphosphate-li	yes	no	0.670	0.728	0.336	2e-30

>sp|Q8L7W2|NUDT8_ARATH Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/280 (70%), Positives = 230/280 (82%), Gaps = 7/280 (2%)

Query: 63  IGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKL 122
           + S++  R+L  LD +DDEY GV+VD  +LPS+P AFAS+LR SL  WRR  KKG+WLKL
Sbjct: 86  MSSAVKERSL--LDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKL 143

Query: 123 PLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCVLPGNATHQVGVGGFVINDNNE 181
           P+E +ELVPIA+KEGF+YHHAE  Y+MLTYWIP+  P +LP NA+HQVGVGGFV+N + E
Sbjct: 144 PVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKE 203

Query: 182 VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 241
           VLVVQEKYC P+  GLWKLPTGFI+ESEEIF GAVREVKEETGVDTEF EVIAFRHAHNV
Sbjct: 204 VLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNV 263

Query: 242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301
           AF+KSDLFFICML+PLS +I +D LEIK AKWMP  EFV+QP+I+GD MFK+VI+IC AR
Sbjct: 264 AFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEAR 323

Query: 302 LRKRYCGLYPHQLVSAFDGQTSSLYYN----DSDTQDTNC 337
           L  RYCGL PH+LVS FDG+ SSLYYN    D D   +NC
Sbjct: 324 LSHRYCGLSPHRLVSTFDGKPSSLYYNVVDDDHDPSHSNC 363

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q94B74|NUDT2_ARATH Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1

 Score =  266 bits (679), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 168/257 (65%), Gaps = 3/257 (1%)

Query: 80  DEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFK 139
           D+Y GV+ +    P DP  F+++LR SL  W    KKG+W+KLP +   L   AVKEGF 
Sbjct: 25  DKYGGVMTEMTH-PMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETAVKEGFW 83

Query: 140 YHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWK 199
           +HHAE +YLML YWIP     LP NA+H+VG+G FVIN N EVLVVQEK       G+WK
Sbjct: 84  FHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQGQGIWK 143

Query: 200 LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLST 259
            PTG ++E E+I  G+VREVKEETGVDTEF +++AFR  H   F KSDLFF+CMLKPLS 
Sbjct: 144 FPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCMLKPLSL 203

Query: 260 EIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFD 319
           EI   + EI+ A+WMP+ E++ QP +Q   + + + DIC A+    Y G  P + VSA D
Sbjct: 204 EINAQESEIEAAQWMPWEEYINQPFVQNYELLRYMTDICSAKTNGDYEGFTPLR-VSAPD 262

Query: 320 GQTSSLYYNDSDTQDTN 336
            Q  +LYYN  D    N
Sbjct: 263 -QQGNLYYNTRDLHSRN 278

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q6NPD7|NUD10_ARATH Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1

 Score =  257 bits (657), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 125/260 (48%), Positives = 165/260 (63%), Gaps = 6/260 (2%)

Query: 72  LRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVP 131
             VL F DD+Y GV+V+ K  P D   F + LR S   WR   KKG+WL LPL +  LV 
Sbjct: 17  FEVLPFVDDDYGGVIVEMKT-PMDTKNFVAALRDSFEQWRLQGKKGVWLNLPLSHVNLVE 75

Query: 132 IAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCN 191
            AVKEGF+YHHAEP YLML YWIP+    +P NA+H+V VG  V+N N E     EKY +
Sbjct: 76  PAVKEGFRYHHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNKE-----EKYGS 130

Query: 192 PAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFI 251
              +G+WK+PTG +DE EEIF  A+REVKEETG+DTEF+E++AF   H   F KSDLFF+
Sbjct: 131 LCGSGIWKIPTGVVDEGEEIFAAAIREVKEETGIDTEFLEILAFCQTHESFFAKSDLFFV 190

Query: 252 CMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYP 311
           C+L+P S +I+  DLEI+ A+WM F +   QP+   + +FK +  IC  ++ K Y G   
Sbjct: 191 CLLRPTSFDIQKQDLEIEAAQWMRFEDSASQPITHKNDLFKDIHHICSMKMEKSYSGFSK 250

Query: 312 HQLVSAFDGQTSSLYYNDSD 331
             + + FD +   LY N  +
Sbjct: 251 KPITTFFDDKLGYLYLNKQE 270

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC6|NUDT5_ARATH Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=3

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/253 (46%), Positives = 162/253 (64%), Gaps = 6/253 (2%)

Query: 61  CKIGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPS-DPDAFASILRFSLIHWRRMNKKGIW 119
           C +    F   + +LD  +D + G VV+   + S     F S L  SL  W+   KKGIW
Sbjct: 18  CSMDGEAFE--ISLLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIW 75

Query: 120 LKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDN 179
           +KLP E + LV  A+K+GF YHHAE EY+MLT+W+P+ P  LP NA+H++G+G FV+N N
Sbjct: 76  IKLPSELSSLVDTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKN 135

Query: 180 NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH 239
            E+LVVQE         +WK+PTG I E E I+ GAVREVKEET +D EFVEV++F  +H
Sbjct: 136 GEMLVVQENSGYFKDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESH 195

Query: 240 NVAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL--IQGDCMFKKVID 296
              +Q K+D+FF+C L+  + EI+  D EI  AKWMP  E+V QP    +G+ MFK + +
Sbjct: 196 QAVWQRKTDIFFVCELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIAN 255

Query: 297 ICIARLRKRYCGL 309
           IC+ R R++Y G 
Sbjct: 256 ICLKRSREKYTGF 268

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SU14|NUDT7_ARATH Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/264 (46%), Positives = 162/264 (61%), Gaps = 8/264 (3%)

Query: 69  SRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAE 128
           ++ + +L+   D YDGV V     P D + F   LR SL HWR   KKGIW+KLPL  A 
Sbjct: 5   AQQIPLLEGETDNYDGVTVTMVE-PMDSEVFTESLRASLSHWREEGKKGIWIKLPLGLAN 63

Query: 129 LVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQE 187
           LV  AV EGF+YHHAEPEYLML  WI + P  +P NA+H VG G  VIN N  EVLVVQE
Sbjct: 64  LVEAAVSEGFRYHHAEPEYLMLVSWISETPDTIPANASHVVGAGALVINKNTKEVLVVQE 123

Query: 188 KYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF-QKS 246
           +        +WKLPTG I+E E+I+ G  REV+EETG+  +FVEV+AFR +H     +K+
Sbjct: 124 RSGFFKDKNVWKLPTGVINEGEDIWTGVAREVEEETGIIADFVEVLAFRQSHKAILKKKT 183

Query: 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY 306
           D+FF+C+L P S +I     EI  AKWMP  E+V QP  + + MFK + +IC  +  + Y
Sbjct: 184 DMFFLCVLSPRSYDITEQKSEILQAKWMPIQEYVDQPWNKKNEMFKFMANICQKKCEEEY 243

Query: 307 CG--LYPHQLVSAFDGQTSSLYYN 328
            G  + P    +   G+ S +Y N
Sbjct: 244 LGFAIVP---TTTSSGKESFIYCN 264

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use both NADH and ADP-ribose as substrates, but not 8-oxo-dGTP, cyclic ADP-ribose, GDP-manose, UDP-glucose, ATP, or GTP. Exerts negative control of EDS1 signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC4|NUDT6_ARATH Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1

 Score =  218 bits (554), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 117/251 (46%), Positives = 154/251 (61%), Gaps = 3/251 (1%)

Query: 80  DEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFK 139
           D Y GV V+    P   + F   LR SL++W     KGIWLKL      L+  A  EGF 
Sbjct: 16  DNYGGVKVNLTE-PMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAKAEGFV 74

Query: 140 YHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNEVLVVQEKYCNPAFAGLW 198
            HHAE EY MLT WI D P  LP NA+H++GVG FV+N    EVLVVQE   +    G+W
Sbjct: 75  CHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTGVW 134

Query: 199 KLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ-KSDLFFICMLKPL 257
           KLPTG + E E I++GA+REV+EETG+ T+FVEV+AFR +H    + K+D+FF+C L+P 
Sbjct: 135 KLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLCELEPT 194

Query: 258 STEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSA 317
           + EIK  D EI  AKWMP  E+V QP  Q   +F+ + +IC+ RL++     +   L + 
Sbjct: 195 TFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMGFSKVLTTT 254

Query: 318 FDGQTSSLYYN 328
             G+ S LY N
Sbjct: 255 SSGKESYLYCN 265

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 22/250 (8%)

Query: 80  DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 135
           D + G+ V   RL +    D  AF   L+ ++  WR   +  +WL +P+  +  +  A  
Sbjct: 51  DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 110

Query: 136 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQEKYCNPAF 194
            GF +HHAE +   LT W+ +GP  LPG A+HQVGV G V +++  ++LVVQ++      
Sbjct: 111 LGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRN---KL 167

Query: 195 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAFQKSDLFFIC 252
             +WK P G  +  E+I   AVREV EETG+ +EF  V++ R  H    AF KSD++ IC
Sbjct: 168 KNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIIC 227

Query: 253 MLKPLSTEIKVDDLEIKGAKWM------------PFMEFVKQPLIQGDCMFKKVIDICIA 300
            LKP S  I     E    +WM            P    V + L+ G       ID+ + 
Sbjct: 228 RLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDLTVE 287

Query: 301 RLRKRYCGLY 310
            L   Y GL+
Sbjct: 288 ELPAVYTGLF 297

May contribute to the regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|P70563|NUDT6_RAT Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=1 SV=1

 Score =  138 bits (347), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 121/250 (48%), Gaps = 22/250 (8%)

Query: 80  DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 135
           D + G+ V   R  +    D  AF  +L+ ++  WR   +   WL +P+  +  +  A  
Sbjct: 48  DRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFIAPAAS 107

Query: 136 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNEVLVVQEKYCNPAF 194
            GF +HHAEP    LT W+ +GP  LPG ATHQVGV G V +    +VLVVQ++      
Sbjct: 108 LGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDR---NKL 164

Query: 195 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSDLFFIC 252
             +WK P G  +  E+I   AVREV EETGV +EF  +++ R  H    AF  SD++ IC
Sbjct: 165 KNMWKFPGGLSEPGEDIGDTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLIC 224

Query: 253 MLKPLSTEIKVDDLEIKGAKWM------------PFMEFVKQPLIQGDCMFKKVIDICIA 300
            L+P S  I     E    +WM            P    V + L+ G       ID+ + 
Sbjct: 225 RLQPRSFTINFCQQECLKCEWMDLESLARTKHTTPITSRVARLLLYGHREGFDKIDLSME 284

Query: 301 RLRKRYCGLY 310
            L   Y GL+
Sbjct: 285 ELPAVYTGLF 294

May contribute to the regulation of cell proliferation.

Rattus norvegicus (taxid: 10116)

>sp|P13420|NUDT6_XENLA Nucleoside diphosphate-linked moiety X motif 6 OS=Xenopus laevis GN=nudt6 PE=1 SV=1

 Score =  138 bits (347), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 113/219 (51%), Gaps = 22/219 (10%)

Query: 126 NAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNEVLV 184
            + L+ IA  EGF +HHAE     LT W+ DGP  LPG ATHQVGV G V++ DN +VLV
Sbjct: 2   QSRLISIAASEGFTFHHAERNESTLTLWLKDGPSKLPGYATHQVGVAGAVLDEDNGKVLV 61

Query: 185 VQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--A 242
           VQ++         WK P G  D+ E+I   AVREV EETG+ +EF  +++ R  HN   A
Sbjct: 62  VQDR---NKTVNAWKFPGGLSDQGEDIGATAVREVLEETGIHSEFKSLLSIRQQHNHPGA 118

Query: 243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF------------VKQPLIQGDCM 290
           F KSDL+ IC LKPLS  I     E    +WM   E             V + L+ G   
Sbjct: 119 FGKSDLYIICRLKPLSYTINFCHQECLKCEWMDLQELAYCSNTTIITSRVAKLLLYGYNE 178

Query: 291 FKKVIDICIARLRKRYCG----LYPHQLVSAFDGQTSSL 325
              ++D+ +      Y G    LY  +L   ++G  + L
Sbjct: 179 GFHLVDLTMRTFPAVYSGLFYSLYHKELPETYEGSATLL 217

May contribute to the regulation of cell proliferation.

Xenopus laevis (taxid: 8355)

>sp|Q8CH40|NUDT6_MOUSE Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus GN=Nudt6 PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 121/250 (48%), Gaps = 22/250 (8%)

Query: 80  DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 135
           D + GV V   R  +    D  AF  +L+ ++  WR   +   WL +P+  +  +  A  
Sbjct: 48  DRFGGVSVHLSRHHTLHGLDAAAFRRLLQAAIQQWRSDGRIAAWLHIPILQSHFIAPAAS 107

Query: 136 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNEVLVVQEKYCNPAF 194
            GF +HHA+P    LT W+ +GP  LPG ATHQVGV G V +    +VLVVQ++      
Sbjct: 108 LGFCFHHAKPHSSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDR---NKL 164

Query: 195 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSDLFFIC 252
             +WK P G  +  E+I   AVREV EETGV +EF  +++ R  H    AF  SD++ +C
Sbjct: 165 KNMWKFPGGLSEPGEDIADTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLVC 224

Query: 253 MLKPLSTEIKVDDLEIKGAKWM------------PFMEFVKQPLIQGDCMFKKVIDICIA 300
            L+P S  I     E    +W+            P    V + L+ G       ID+ + 
Sbjct: 225 RLQPRSFTINFCQQECLKCEWIDLENLARTKHTTPITSRVARLLLYGLREGFDKIDLSME 284

Query: 301 RLRKRYCGLY 310
            L   Y GL+
Sbjct: 285 ELPAVYTGLF 294

May contribute to the regulation of cell proliferation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
255581321	368	mutt domain protein, putative [Ricinus c	0.985	0.910	0.641	1e-130
357476761	357	Nudix hydrolase [Medicago truncatula] gi	0.979	0.932	0.627	1e-128
224138688	372	predicted protein [Populus trichocarpa]	0.988	0.903	0.639	1e-127
359806679	367	uncharacterized protein LOC100815507 [Gl	0.982	0.910	0.628	1e-125
356540550	363	PREDICTED: nudix hydrolase 8-like [Glyci	0.970	0.909	0.611	1e-120
356513760	298	PREDICTED: nudix hydrolase 8-like [Glyci	0.85	0.969	0.693	1e-119
224074201	267	predicted protein [Populus trichocarpa]	0.785	1.0	0.752	1e-116
449458978	355	PREDICTED: nudix hydrolase 8-like [Cucum	0.911	0.873	0.616	1e-115
18422772	369	nudix hydrolase 8 [Arabidopsis thaliana]	0.802	0.739	0.7	1e-112
21593371	371	mutT domain protein-like [Arabidopsis th	0.802	0.735	0.7	1e-112

>gi|255581321|ref|XP_002531471.1| mutt domain protein, putative [Ricinus communis] gi|223528925|gb|EEF30921.1| mutt domain protein, putative [Ricinus communis]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/368 (64%), Positives = 272/368 (73%), Gaps = 33/368 (8%)

Query: 6   MELKLLGSKSVSASSIFQNGGTTSS---SFRHGVSIRFSPQ-LCSCRGVFPRVS-----E 56
           MELK L SKSVS+S I     T SS   S RH   +R SP+ + SCRGVF +VS      
Sbjct: 1   MELKFLDSKSVSSSEIALMATTRSSPCPSLRHVGGVRLSPEFIWSCRGVFLKVSCSSSSN 60

Query: 57  NSYLCK------------------------IGSSIFSRNLRVLDFFDDEYDGVVVDPKRL 92
            +YL K                          S++FS N ++LD FDDEY GVVVD  RL
Sbjct: 61  GTYLSKKHISAGQENIVAENYLYRTNGTNGANSTLFSGNAKILDAFDDEYGGVVVDSNRL 120

Query: 93  PSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTY 152
           P + D FAS L  SL HW+   KKGIWLKLPLE +ELVPIAVKEGF+YHHAEP Y+MLTY
Sbjct: 121 PKNSDDFASSLHLSLSHWKITGKKGIWLKLPLERSELVPIAVKEGFQYHHAEPGYVMLTY 180

Query: 153 WIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF 212
           W+P+GPC+LP NATHQVGVGGFVIND NEVLVVQE +C P+F GLWK+PTGFI ESEEI+
Sbjct: 181 WLPEGPCMLPANATHQVGVGGFVINDKNEVLVVQETFCAPSFLGLWKIPTGFIHESEEIY 240

Query: 213 KGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAK 272
            GA+REVKEETG+DTEF+EV+AFRHAHN+AF KSDLFF+CMLKPLST+I VDDLEI+ AK
Sbjct: 241 TGAMREVKEETGIDTEFLEVVAFRHAHNLAFDKSDLFFVCMLKPLSTQIIVDDLEIQAAK 300

Query: 273 WMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDT 332
           WMP +EFVKQPLIQGD MFKK+IDICIARL KRYCGL  H+LVS FDG+ S LYYN  D 
Sbjct: 301 WMPLVEFVKQPLIQGDSMFKKIIDICIARLGKRYCGLSAHKLVSKFDGRLSCLYYNVVDN 360

Query: 333 QDTNCIGN 340
           ++ NC  N
Sbjct: 361 ENINCTVN 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476761|ref|XP_003608666.1| Nudix hydrolase [Medicago truncatula] gi|355509721|gb|AES90863.1| Nudix hydrolase [Medicago truncatula] gi|388508944|gb|AFK42538.1| unknown [Medicago truncatula]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/357 (62%), Positives = 271/357 (75%), Gaps = 24/357 (6%)

Query: 6   MELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRV----------- 54
           ME+K L S S+S   + +   T  +SFRH   +R+SP+    RG+F +            
Sbjct: 1   MEVKSLSSNSLSTFEVGKFSSTLFTSFRHKFGVRYSPKFKCRRGLFLKTCSASDDTYLAD 60

Query: 55  ----------SENSYLCKIGS--SIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASI 102
                     SE S  C  GS  S++ RNL +LD FDDEY G+++DP RLP +P AFAS+
Sbjct: 61  KAVIFSDDFASETSSHCINGSTSSLYYRNL-ILDAFDDEYGGILIDPNRLPHNPYAFASM 119

Query: 103 LRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLP 162
           L  SL HW+RM KKGIWLKLP+E ++LVP+AVKEGF+YHHAEP Y+MLTYWIP+GPC+LP
Sbjct: 120 LCLSLSHWKRMGKKGIWLKLPIEQSDLVPVAVKEGFQYHHAEPGYVMLTYWIPEGPCMLP 179

Query: 163 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 222
            NA+HQVG+GGFVIN NNEVLVVQEK+C+PA  GLWK+PTGFI E+EEI+ GAVREVKEE
Sbjct: 180 ANASHQVGIGGFVINQNNEVLVVQEKHCSPATLGLWKIPTGFIHEAEEIYTGAVREVKEE 239

Query: 223 TGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282
           TG+DTEF+EVIAFRH HNVAF+KSDLFFICMLKPLS+ I VDDLEI  AKWMP +EFV+Q
Sbjct: 240 TGIDTEFIEVIAFRHVHNVAFEKSDLFFICMLKPLSSTITVDDLEIDAAKWMPLVEFVEQ 299

Query: 283 PLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIG 339
           PLIQ D MFKK++DI IARL KRYCGL  HQ+VS FDG+ +SLYYN  D  D+NC+G
Sbjct: 300 PLIQEDSMFKKIVDIFIARLGKRYCGLSTHQVVSKFDGKITSLYYNVFDNDDSNCVG 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138688|ref|XP_002326665.1| predicted protein [Populus trichocarpa] gi|222833987|gb|EEE72464.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/372 (63%), Positives = 271/372 (72%), Gaps = 36/372 (9%)

Query: 5   LMELKLLGSKSVS----ASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRG--VFPRVSENS 58
           + +LK    KS S    A+ + + G +  SS  H V +RFS +  SCRG  VF + S +S
Sbjct: 1   MTQLKFFDFKSASLSEKAALMGRAGSSPFSSLGHSVGVRFSQEFSSCRGSGVFTKASYSS 60

Query: 59  -----YLCKIGSS-------------------------IFSRNLRVLDFFDDEYDGVVVD 88
                Y+ K   S                         +FSRN++ LD  DDEY GVVVD
Sbjct: 61  SSNGTYMSKRALSSVDKEKFAAENYFYQINGTSVSSSSLFSRNVKALDACDDEYGGVVVD 120

Query: 89  PKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYL 148
           P RLP +PDAFASILRFSL HW+   KKGIWLKLPLE +ELVP AVKEGF+YHHAE  Y+
Sbjct: 121 PDRLPVNPDAFASILRFSLSHWKMKGKKGIWLKLPLERSELVPFAVKEGFQYHHAERGYV 180

Query: 149 MLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDES 208
           MLTYWIP+GPC+LP NATHQVGVGGFVIND NEVLVVQEK+  P+FA LWK+PTGFI ES
Sbjct: 181 MLTYWIPEGPCMLPTNATHQVGVGGFVINDKNEVLVVQEKFYAPSFADLWKIPTGFILES 240

Query: 209 EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEI 268
           EEI+ GAVREVKEETGVDTEFVEVIAFRHAHN+AF KSDLFF+CMLKPLS +IKVDDLEI
Sbjct: 241 EEIYSGAVREVKEETGVDTEFVEVIAFRHAHNLAFDKSDLFFVCMLKPLSAQIKVDDLEI 300

Query: 269 KGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYN 328
           + AKWMP +EFV QPLIQ D MFKK+IDICIARL K YCGL PHQ+VS FDG+ S LYYN
Sbjct: 301 QAAKWMPLVEFVAQPLIQEDGMFKKIIDICIARLGKHYCGLLPHQVVSKFDGRPSCLYYN 360

Query: 329 DSDTQDTNCIGN 340
             D QD NC GN
Sbjct: 361 VIDDQDVNCKGN 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806679|ref|NP_001241031.1| uncharacterized protein LOC100815507 [Glycine max] gi|255639984|gb|ACU20284.1| unknown [Glycine max]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/366 (62%), Positives = 270/366 (73%), Gaps = 32/366 (8%)

Query: 6   MELKLLGSKSVSASSIFQNGGTTS---SSFRHGVSIRFSPQLCSCRGVFPRV---SENSY 59
           MELK   S SVS S +   G + S   SSFRH V +RFS      RG+F      S+N+Y
Sbjct: 1   MELKSFSSCSVSTSEVAHVGRSYSTLISSFRHKVGVRFSTHFQCRRGLFLTTYCASDNTY 60

Query: 60  LC------KIG--------------------SSIFSRNLRVLDFFDDEYDGVVVDPKRLP 93
           L        +G                    S  +S NL++LD FDDEY GVVV P RLP
Sbjct: 61  LTDKAVISSVGQDNFAAETSSHRINGTNGSISRFYSTNLKLLDAFDDEYGGVVVHPDRLP 120

Query: 94  SDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYW 153
           S+P  FAS+LR SL  W++M KKGIWLKLPL+ ++LVPIAVKEGF+YHHAEP Y+MLTYW
Sbjct: 121 SNPYTFASVLRLSLSQWKKMGKKGIWLKLPLDQSDLVPIAVKEGFQYHHAEPGYVMLTYW 180

Query: 154 IPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK 213
           IP+GP +LP NA+HQVGVGGFVINDNNEVLVVQE++C+P   GLWK+PTGFI E+EEI+ 
Sbjct: 181 IPEGPSMLPANASHQVGVGGFVINDNNEVLVVQERHCSPTTLGLWKIPTGFILEAEEIYT 240

Query: 214 GAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKW 273
           GAVREVKEETG+DTEFVEVIAFRHAHNVAF+KSDLFFICML+PLS++I VDDLEI  AKW
Sbjct: 241 GAVREVKEETGIDTEFVEVIAFRHAHNVAFEKSDLFFICMLRPLSSKIIVDDLEIAAAKW 300

Query: 274 MPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQ 333
           MP ++FV+QPLIQ D MFKK++DI IARL KRYCGL  HQ+VS FDG  SSLYYN  D  
Sbjct: 301 MPLVDFVEQPLIQEDSMFKKIVDIFIARLGKRYCGLSTHQVVSKFDGMVSSLYYNVIDNA 360

Query: 334 DTNCIG 339
           D NC+G
Sbjct: 361 DNNCVG 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540550|ref|XP_003538751.1| PREDICTED: nudix hydrolase 8-like [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/368 (61%), Positives = 265/368 (72%), Gaps = 38/368 (10%)

Query: 6   MELKLLGSKSVSASSIFQNG----GTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENS--- 58
           MELK L S SV  S     G    GT SS   +  S+R S QL    G+F R +E S   
Sbjct: 1   MELKSLTSNSVCTSEFVHVGRTRTGTYSSLLSNFRSVRVSRQLNCFGGLFRRNNEASNKI 60

Query: 59  YLC------KIG--------------------SSIFSRNLRVLDFFDDEYDGVVVDPKRL 92
           YL        +G                    SS+ SRNLRVLD FDD Y+GVV+D  RL
Sbjct: 61  YLADKAVISSVGPHNLAAETSFHHINGTNGSTSSLCSRNLRVLDAFDDVYEGVVIDSDRL 120

Query: 93  PSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTY 152
           P +P  FA+ LRFSL HW++M KKGIWL+LP E ++ VPIA+KEGF+YHHAEP Y+MLTY
Sbjct: 121 PDNPSTFAANLRFSLSHWKKMGKKGIWLRLPSEQSDFVPIAIKEGFRYHHAEPGYVMLTY 180

Query: 153 WIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF 212
           WIP+GPC+LP NA+HQVGVGGFVIND++EVLVVQEK C PA  G WK+PTGF+ +SEE++
Sbjct: 181 WIPEGPCMLPANASHQVGVGGFVINDSSEVLVVQEKQCAPANRGQWKIPTGFVLQSEELY 240

Query: 213 KGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAK 272
            GA+REVKEETG+DTEFVEVIAFRHA NVAF+KSDLFFICML+PLS EI VDD EI+ AK
Sbjct: 241 AGAIREVKEETGIDTEFVEVIAFRHARNVAFEKSDLFFICMLRPLSAEIIVDDPEIEAAK 300

Query: 273 WMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDT 332
           WMP +EFV+QPLIQ D MFKK+IDICIA L KRYCGL  HQ+VS FDG++SSLYYN    
Sbjct: 301 WMPLVEFVEQPLIQEDSMFKKIIDICIACLEKRYCGLNAHQMVSKFDGKSSSLYYN---- 356

Query: 333 QDTNCIGN 340
              NCIG+
Sbjct: 357 -VINCIGS 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513760|ref|XP_003525578.1| PREDICTED: nudix hydrolase 8-like [Glycine max]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/300 (69%), Positives = 245/300 (81%), Gaps = 11/300 (3%)

Query: 46  SCRGVFPRVSENSYLCKIG------SSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAF 99
           SC  V P     ++L +I       S  +S NL++LD FDDEY GVVV P RLPS+P  F
Sbjct: 3   SCENVVP----CNFLYRINGTNGSISRFYSTNLKLLDAFDDEYGGVVVHPDRLPSNPYTF 58

Query: 100 ASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPC 159
           AS+LR SL  W++M KKGIWLKLPLE ++LVPIAVKEGF+YHHAEP Y+MLTYWIP GP 
Sbjct: 59  ASVLRLSLSQWKKMGKKGIWLKLPLEQSDLVPIAVKEGFQYHHAEPGYVMLTYWIPAGPS 118

Query: 160 VLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREV 219
           +LP NA+HQVGVGGFVINDNNEVLVVQE++C+PA  GLWK+PTGFI E+EEI+ GAVREV
Sbjct: 119 MLPANASHQVGVGGFVINDNNEVLVVQERHCSPATLGLWKIPTGFILEAEEIYTGAVREV 178

Query: 220 KEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF 279
           KEETG+DT+F+EVIAFRHAHNVAF+KSDLFFICML+PLS+++ VDDLEI  AKWMP +EF
Sbjct: 179 KEETGIDTDFIEVIAFRHAHNVAFEKSDLFFICMLRPLSSKVIVDDLEIAAAKWMPLVEF 238

Query: 280 VKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIG 339
           V+QPLIQ D MFKK++DI IARL KRYCGL  HQ+VS FDG  SSLYYN  D +D NC+G
Sbjct: 239 VEQPLIQEDSMFKKIVDIFIARLGKRYCGLSTHQVVSKFDGMVSSLYYNVIDNED-NCVG 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074201|ref|XP_002304298.1| predicted protein [Populus trichocarpa] gi|222841730|gb|EEE79277.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/267 (75%), Positives = 227/267 (85%)

Query: 74  VLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIA 133
           V D  DDEY GVVVDP RLP +PDAFA +L+FSL HW+   KKGIWLKLPLE +ELVP+A
Sbjct: 1   VFDACDDEYGGVVVDPDRLPVNPDAFAPMLQFSLSHWKMKGKKGIWLKLPLERSELVPVA 60

Query: 134 VKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPA 193
           VKEGF+YHHAE  Y+MLTYWIP+GPC+LP NATHQVGVGGFVIND NEVLVVQEK+  P+
Sbjct: 61  VKEGFEYHHAERGYVMLTYWIPEGPCMLPSNATHQVGVGGFVINDKNEVLVVQEKFYAPS 120

Query: 194 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 253
           FA LWK+PTGFI ESEEI+ GAVREVKEETGVDTEFVEVIAFRHAHN+ F KSDLFF+CM
Sbjct: 121 FADLWKIPTGFILESEEIYTGAVREVKEETGVDTEFVEVIAFRHAHNLDFDKSDLFFVCM 180

Query: 254 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQ 313
           LKPLS +IKVD+LEI+ AKWMPF+EFV QPLIQ D +FKK+IDIC+ARL K YCGL P Q
Sbjct: 181 LKPLSAQIKVDNLEIQAAKWMPFVEFVAQPLIQEDGLFKKIIDICLARLGKHYCGLLPRQ 240

Query: 314 LVSAFDGQTSSLYYNDSDTQDTNCIGN 340
           +VS FDG+ S LYYN  DT + NC GN
Sbjct: 241 VVSKFDGRPSCLYYNVLDTGNVNCNGN 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458978|ref|XP_004147223.1| PREDICTED: nudix hydrolase 8-like [Cucumis sativus] gi|449514676|ref|XP_004164447.1| PREDICTED: nudix hydrolase 8-like [Cucumis sativus]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/326 (61%), Positives = 247/326 (75%), Gaps = 16/326 (4%)

Query: 25  GGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCK-----------IGSSIFSRNLR 73
           G  + +S+ +GV     P    C G    + ++    +           + S +FSR+ R
Sbjct: 34  GKFSRASYSNGV-----PNKAYCSGAVSSIGQDKLPAEGFTHQINGTNGLSSKLFSRDRR 88

Query: 74  VLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIA 133
           +LD  DD+YDG+V+DP  LPS+P  F+S LRFSL HW++  KKG+WLKL +E +EL+PIA
Sbjct: 89  LLDAVDDQYDGIVIDPNGLPSNPVVFSSNLRFSLSHWKKKGKKGVWLKLLVEQSELIPIA 148

Query: 134 VKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPA 193
           +K GF+YHHAEPEYLMLTYWIPDGPC+LP NA+H VGVGGFVIND NEVLVVQEKYC+PA
Sbjct: 149 LKAGFQYHHAEPEYLMLTYWIPDGPCMLPSNASHHVGVGGFVINDRNEVLVVQEKYCSPA 208

Query: 194 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 253
           FA  WK+PTGFI + EEI+ G  REVKEETG++TEF+EVIAFRHAHN+AF+KSDLFF+CM
Sbjct: 209 FANFWKIPTGFIVQKEEIYTGVTREVKEETGIETEFIEVIAFRHAHNIAFEKSDLFFVCM 268

Query: 254 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQ 313
           L+PLSTEI VDDLEI+ AKWMP  EFV+Q L++ D MFKK+IDICIARL K YCGL  HQ
Sbjct: 269 LRPLSTEIIVDDLEIQAAKWMPLAEFVEQSLVKEDVMFKKIIDICIARLDKYYCGLNVHQ 328

Query: 314 LVSAFDGQTSSLYYNDSDTQDTNCIG 339
           LVS FDG+ SSLYYN  + +D  C G
Sbjct: 329 LVSKFDGKLSSLYYNTIEGEDLTCTG 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422772|ref|NP_568680.1| nudix hydrolase 8 [Arabidopsis thaliana] gi|68565908|sp|Q8L7W2.2|NUDT8_ARATH RecName: Full=Nudix hydrolase 8; Short=AtNUDT8 gi|332008107|gb|AED95490.1| nudix hydrolase 8 [Arabidopsis thaliana]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/280 (70%), Positives = 230/280 (82%), Gaps = 7/280 (2%)

Query: 63  IGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKL 122
           + S++  R+L  LD +DDEY GV+VD  +LPS+P AFAS+LR SL  WRR  KKG+WLKL
Sbjct: 86  MSSAVKERSL--LDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKL 143

Query: 123 PLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCVLPGNATHQVGVGGFVINDNNE 181
           P+E +ELVPIA+KEGF+YHHAE  Y+MLTYWIP+  P +LP NA+HQVGVGGFV+N + E
Sbjct: 144 PVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKE 203

Query: 182 VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 241
           VLVVQEKYC P+  GLWKLPTGFI+ESEEIF GAVREVKEETGVDTEF EVIAFRHAHNV
Sbjct: 204 VLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNV 263

Query: 242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301
           AF+KSDLFFICML+PLS +I +D LEIK AKWMP  EFV+QP+I+GD MFK+VI+IC AR
Sbjct: 264 AFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEAR 323

Query: 302 LRKRYCGLYPHQLVSAFDGQTSSLYYN----DSDTQDTNC 337
           L  RYCGL PH+LVS FDG+ SSLYYN    D D   +NC
Sbjct: 324 LSHRYCGLSPHRLVSTFDGKPSSLYYNVVDDDHDPSHSNC 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593371|gb|AAM65320.1| mutT domain protein-like [Arabidopsis thaliana]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/280 (70%), Positives = 230/280 (82%), Gaps = 7/280 (2%)

Query: 63  IGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKL 122
           + S++  R+L  LD +DDEY GV+VD  +LPS+P AFAS+LR SL  WRR  KKG+WLKL
Sbjct: 88  MSSAVKERSL--LDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKL 145

Query: 123 PLENAELVPIAVKEGFKYHHAEPEYLMLTYWIP-DGPCVLPGNATHQVGVGGFVINDNNE 181
           P+E +ELVPIA+KEGF+YHHAE  Y+MLTYWIP + P +LP NA+HQVGVGGFV+N + E
Sbjct: 146 PVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPKEEPSMLPANASHQVGVGGFVLNQHKE 205

Query: 182 VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 241
           VLVVQEKYC P+  GLWKLPTGFI+ESEEIF GAVREVKEETGVDTEF EVIAFRHAHNV
Sbjct: 206 VLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNV 265

Query: 242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301
           AF+KSDLFFICML+PLS +I +D LEIK AKWMP  EFV+QP+I+GD MFK+VI+IC AR
Sbjct: 266 AFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEAR 325

Query: 302 LRKRYCGLYPHQLVSAFDGQTSSLYYN----DSDTQDTNC 337
           L  RYCGL PH+LVS FDG+ SSLYYN    D D   +NC
Sbjct: 326 LSHRYCGLSPHRLVSTFDGKPSSLYYNVVDDDHDPSHSNC 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2171544	369	NUDT8 "nudix hydrolase homolog	0.802	0.739	0.7	4.1e-104
TAIR|locus:2168993	278	NUDT2 "nudix hydrolase homolog	0.764	0.935	0.505	4.5e-66
TAIR|locus:2058364	302	NUDT5 "nudix hydrolase homolog	0.723	0.814	0.472	9.6e-57
TAIR|locus:2058334	283	NUDT6 "nudix hydrolase homolog	0.720	0.865	0.476	2.4e-53
DICTYBASE|DDB_G0281219	376	DDB_G0281219 "Nucleoside dipho	0.744	0.672	0.383	7.1e-45
FB|FBgn0030668	330	CG8128 [Drosophila melanogaste	0.6	0.618	0.367	4e-35
UNIPROTKB|F1NLN3	297	F1NLN3 "Uncharacterized protei	0.594	0.680	0.382	4.7e-32
UNIPROTKB|F1RQN4	314	NUDT6 "Uncharacterized protein	0.585	0.633	0.388	4.7e-32
UNIPROTKB|E2RC30	316	NUDT6 "Uncharacterized protein	0.585	0.629	0.377	9.8e-32
UNIPROTKB|A7YY29	257	NUDT6 "NUDT6 protein" [Bos tau	0.497	0.657	0.411	2.6e-31

TAIR|locus:2171544 NUDT8 "nudix hydrolase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 196/280 (70%), Positives = 230/280 (82%)

Query:    63 IGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKL 122
             + S++  R+L  LD +DDEY GV+VD  +LPS+P AFAS+LR SL  WRR  KKG+WLKL
Sbjct:    86 MSSAVKERSL--LDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKL 143

Query:   123 PLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCVLPGNATHQVGVGGFVINDNNE 181
             P+E +ELVPIA+KEGF+YHHAE  Y+MLTYWIP+  P +LP NA+HQVGVGGFV+N + E
Sbjct:   144 PVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKE 203

Query:   182 VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 241
             VLVVQEKYC P+  GLWKLPTGFI+ESEEIF GAVREVKEETGVDTEF EVIAFRHAHNV
Sbjct:   204 VLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNV 263

Query:   242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301
             AF+KSDLFFICML+PLS +I +D LEIK AKWMP  EFV+QP+I+GD MFK+VI+IC AR
Sbjct:   264 AFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEAR 323

Query:   302 LRKRYCGLYPHQLVSAFDGQTSSLYYN----DSDTQDTNC 337
             L  RYCGL PH+LVS FDG+ SSLYYN    D D   +NC
Sbjct:   324 LSHRYCGLSPHRLVSTFDGKPSSLYYNVVDDDHDPSHSNC 363

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2168993 NUDT2 "nudix hydrolase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 133/263 (50%), Positives = 170/263 (64%)

Query:    74 VLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIA 133
             +L    D+Y GV+ +    P DP  F+++LR SL  W    KKG+W+KLP +   L   A
Sbjct:    19 LLPSVQDKYGGVMTEMTH-PMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETA 77

Query:   134 VKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPA 193
             VKEGF +HHAE +YLML YWIP     LP NA+H+VG+G FVIN N EVLVVQEK     
Sbjct:    78 VKEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQ 137

Query:   194 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 253
               G+WK PTG ++E E+I  G+VREVKEETGVDTEF +++AFR  H   F KSDLFF+CM
Sbjct:   138 GQGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCM 197

Query:   254 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQ 313
             LKPLS EI   + EI+ A+WMP+ E++ QP +Q   + + + DIC A+    Y G  P +
Sbjct:   198 LKPLSLEINAQESEIEAAQWMPWEEYINQPFVQNYELLRYMTDICSAKTNGDYEGFTPLR 257

Query:   314 LVSAFDGQTSSLYYNDSDTQDTN 336
              VSA D Q  +LYYN  D    N
Sbjct:   258 -VSAPD-QQGNLYYNTRDLHSRN 278

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2058364 NUDT5 "nudix hydrolase homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 119/252 (47%), Positives = 162/252 (64%)

Query:    61 CKIGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDA-FASILRFSLIHWRRMNKKGIW 119
             C +    F  +L  LD  +D + G VV+   + S     F S L  SL  W+   KKGIW
Sbjct:    18 CSMDGEAFEISL--LDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIW 75

Query:   120 LKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDN 179
             +KLP E + LV  A+K+GF YHHAE EY+MLT+W+P+ P  LP NA+H++G+G FV+N N
Sbjct:    76 IKLPSELSSLVDTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKN 135

Query:   180 NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH 239
              E+LVVQE         +WK+PTG I E E I+ GAVREVKEET +D EFVEV++F  +H
Sbjct:   136 GEMLVVQENSGYFKDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESH 195

Query:   240 NVAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI--QGDCMFKKVID 296
                +Q K+D+FF+C L+  + EI+  D EI  AKWMP  E+V QP    +G+ MFK + +
Sbjct:   196 QAVWQRKTDIFFVCELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIAN 255

Query:   297 ICIARLRKRYCG 308
             IC+ R R++Y G
Sbjct:   256 ICLKRSREKYTG 267

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2058334 NUDT6 "nudix hydrolase homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 121/254 (47%), Positives = 159/254 (62%)

Query:    80 DEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLP--LENAELVPIAVKEG 137
             D Y GV V+    P   + F   LR SL++W     KGIWLKL   L+N  L+  A  EG
Sbjct:    16 DNYGGVKVNLTE-PMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDN--LIAPAKAEG 72

Query:   138 FKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQEKYCNPAFAG 196
             F  HHAE EY MLT WI D P  LP NA+H++GVG FV+N    EVLVVQE   +    G
Sbjct:    73 FVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTG 132

Query:   197 LWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ-KSDLFFICMLK 255
             +WKLPTG + E E I++GA+REV+EETG+ T+FVEV+AFR +H    + K+D+FF+C L+
Sbjct:   133 VWKLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLCELE 192

Query:   256 PLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK-RYCGLYPHQL 314
             P + EIK  D EI  AKWMP  E+V QP  Q   +F+ + +IC+ RL++  Y G +   L
Sbjct:   193 PTTFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMG-FSKVL 251

Query:   315 VSAFDGQTSSLYYN 328
              +   G+ S LY N
Sbjct:   252 TTTSSGKESYLYCN 265

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0051707 "response to other organism" evidence=IEP

GO:0035529 "NADH pyrophosphatase activity" evidence=IDA

GO:0080151 "positive regulation of salicylic acid mediated signaling pathway" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

DICTYBASE|DDB_G0281219 DDB_G0281219 "Nucleoside diphosphate-linked moiety X motif 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 104/271 (38%), Positives = 152/271 (56%)

Query:    74 VLDFFDDEYDGVVV-DPKRLP--SDPDA---FASILRFSLIHWRRMNKKGIWLKLPLENA 127
             +L    D +DG++V D  + P  S  D+   F  I++ SL  W    ++GIW+++P  N+
Sbjct:   111 ILAGIPDIFDGIIVKDTTQYPKGSGEDSVSKFKEIIKNSLQFWTENKRRGIWIEIPETNS 170

Query:   128 ELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCVLPGNATHQVGVGGFVINDNNEVLVVQ 186
              L+P  V+ GF +HH +  Y+MLT W+P G P  LP   +H +G GG VIND NE+L++ 
Sbjct:   171 ILIPTLVENGFSFHHCQSNYIMLTKWLPIGEPNKLPHYTSHFIGCGGVVINDRNEILLIT 230

Query:   187 EKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 246
             EK   P     WK+P G  D  E+I + AVREV EETG+ TEFV ++  R  HN AF + 
Sbjct:   231 EKQ-RP---DKWKIPGGANDPGEDICETAVREVWEETGIRTEFVSILGLRQLHNYAFNRG 286

Query:   247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF--VKQPLIQGDCMFKKVIDICIARLRK 304
             D++FIC LKPLS+EI  D  EI   KW P  EF  ++ P      + +   D C      
Sbjct:   287 DIYFICALKPLSSEINSDPSEIAQCKWAPVKEFTEIETPFPLQKSVSRLAYDYCF----N 342

Query:   305 RYCGLYPHQLVSAFDGQTSSLYY-NDSDTQD 334
              Y G+    + ++     S +Y+ +D+D +D
Sbjct:   343 GYKGMKASAVANSLRAGNSFVYHGSDTDFED 373

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0030668 CG8128 [Drosophila melanogaster (taxid:7227)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 76/207 (36%), Positives = 116/207 (56%)

Query:    80 DEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFK 139
             D + GV VD +    D  +F   L  SL  W     + IW ++  E ++ VPI  + GF 
Sbjct:    72 DRFAGVTVDGREENVDKSSFRDKLTKSLDFWTTNKNRAIWFRVYKEQSDWVPILAENGFD 131

Query:   140 YHHAEPEYLMLTYWIPDGPCV-LPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLW 198
             +HHA+   +++  W+P+     LP  A   +GVGG VIN+ +EVLVV +++        W
Sbjct:   132 FHHAKTGVVVMYRWLPEHESSNLPTYAHTLMGVGGLVINEQDEVLVVSDRFA--MIPNSW 189

Query:   199 KLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLS 258
             KLP G+++  E +   A+REV EETG+ TEF  V++ RHAH   F  SD++ +  LKPL+
Sbjct:   190 KLPGGYVEPRENLIDAAIREVAEETGIRTEFRSVVSLRHAHGGTFGCSDMYVVIALKPLN 249

Query:   259 TEIKVDDLEIKGAKWMPFMEFVKQPLI 285
              +    + EI   +WMP  E++K P +
Sbjct:   250 LDFTRCEREIARIQWMPIAEYLKHPQV 276

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1NLN3 F1NLN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 81/212 (38%), Positives = 118/212 (55%)

Query:    77 FFDDEYDG--VVVDPKRLPSDPD--AFASILRFSLIHWRRMNKKGIWLKLPLENAELVPI 132
             F  D+Y G  V +   R P   +  AF   LR S+  W++  +  +WL +P+  + L  +
Sbjct:    32 FKPDKYGGGNVELAELRRPRRRERAAFGRWLRASVAQWQQEGRVAVWLHVPIFQSGLAAV 91

Query:   133 AVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQEKYCN 191
             A  +GF +HHAE     LT W+ +GP  LP  A+HQ+GV G V+++N+ +VLVVQ++  N
Sbjct:    92 AASQGFAFHHAESGSATLTRWLGEGPSRLPAFASHQLGVAGAVLDENSGKVLVVQDR--N 149

Query:   192 PAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR--HAHNVAFQKSDLF 249
                 G WK P G  +  E+I   AVREV EETG+ +EF  +++ R  H H  AF KSD++
Sbjct:   150 KTVNG-WKFPGGLSNPGEDIGDTAVREVFEETGIKSEFKSILSIRQQHKHPGAFGKSDMY 208

Query:   250 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
              IC L+P S  I     E    +WM   E  +
Sbjct:   209 IICRLQPSSFTINFCQQECLRCEWMDLDELAR 240

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RQN4 NUDT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 80/206 (38%), Positives = 112/206 (54%)

Query:    80 DEYDGVVVDPKRLPS-DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGF 138
             D + GV V    L   D  AF   L+ ++  WR   +  +WL +P+  +  +  A   GF
Sbjct:    52 DRFGGVSVKLDALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGF 111

Query:   139 KYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNE-VLVVQEKYCNPAFAGL 197
              +HHAE +   LT W+  GP  LPG ATHQVGV G V ++N + +LVVQ++  N     +
Sbjct:   112 CFHHAESDSSTLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDR--NK-LKNM 168

Query:   198 WKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSDLFFICMLK 255
             WK P G  +  E+I   AVREV EETG+ +EF+ +++ R  H    AF KSD++ IC LK
Sbjct:   169 WKFPGGLSEPGEDIGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLK 228

Query:   256 PLSTEIKVDDLEIKGAKWMPFMEFVK 281
             P S  I     E    +WM   + VK
Sbjct:   229 PRSFIINFCQHECLRCEWMDLSDLVK 254

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2RC30 NUDT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 79/209 (37%), Positives = 115/209 (55%)

Query:    80 DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 135
             D + GV V   RL +    D  +F   L+ ++  WR   +  +WL +P+  +  +  A  
Sbjct:    51 DRFGGVSVQLARLGALDRLDAASFRRGLQAAIQQWRSEGRIAVWLHIPILQSRFIAPAAS 110

Query:   136 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQEKYCNPAF 194
              GF +HHAE +   LT W+ +GP  LPG ATHQ+GV G V ++N  ++LVVQ++  N   
Sbjct:   111 LGFCFHHAESDSSTLTLWLGEGPSRLPGYATHQLGVAGAVFDENTRKILVVQDR--NK-L 167

Query:   195 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR--HAHNVAFQKSDLFFIC 252
               +WK P G  +  E+I   AVREV EETG+ +EF  +++ R  HA   AF KSD++ IC
Sbjct:   168 KNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFKSLLSIRQQHASPGAFGKSDMYIIC 227

Query:   253 MLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
              LKP S  I     E    +WM   + +K
Sbjct:   228 RLKPYSFTINFCQHECLRCEWMDLNDLIK 256

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|A7YY29 NUDT6 "NUDT6 protein" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/175 (41%), Positives = 100/175 (57%)

Query:   110 WRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQV 169
             WR   +  +WL +P+  +  +  A   GF +HH E +  ML+ W+ DGP  LPG ATHQV
Sbjct:    26 WRSEGRVAVWLHIPILQSRFIAPAASLGFCFHHTESDSSMLSLWLGDGPSRLPGYATHQV 85

Query:   170 GVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
             GV G V ++N  ++LVVQ++  N     +WK P G  +  E+I   AVREV EETG+ +E
Sbjct:    86 GVAGAVFDENTRKILVVQDR--NK-LKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSE 142

Query:   229 FVEVIAFR--HAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
             F  +++ R  H H  AF KSD++ IC LKP S  I     E    +WM   + VK
Sbjct:   143 FRSLLSIRQQHTHPGAFGKSDMYIICRLKPYSFTINFCQRECLKCEWMNLSDLVK 197

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W2	NUDT8_ARATH	3, ., 6, ., 1, ., -	0.7	0.8029	0.7398	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.766
3rd Layer	3.6.1.13	0.824
3rd Layer	3.6.1.22	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009534001 SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (269 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	2e-67
pfam00293	133	pfam00293, NUDIX, NUDIX domain	4e-22
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	8e-17
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	5e-14
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	2e-12
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	4e-12
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	5e-12
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	6e-12
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	5e-11
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	5e-11
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	2e-10
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	3e-10
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	9e-10
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	2e-09
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	2e-08
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	4e-08
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	8e-08
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	1e-07
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	3e-07
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	9e-07
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	6e-06
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	9e-06
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	1e-05
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	3e-05
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	3e-05
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	3e-05
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	3e-05
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	4e-05
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	4e-05
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	5e-05
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	6e-05
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	6e-05
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	1e-04
COG2816	279	COG2816, NPY1, NTP pyrophosphohydrolases containin	1e-04
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	2e-04
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	3e-04
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	4e-04
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	4e-04
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	7e-04
TIGR00586	128	TIGR00586, mutt, mutator mutT protein	0.001
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	0.001
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	0.001

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  207 bits (528), Expect = 2e-67
 Identities = 76/132 (57%), Positives = 92/132 (69%), Gaps = 5/132 (3%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
           H VGVGG V+N+ NEVLVVQE+   P     WKLP G +D  E+IF GAVREV EETG+D
Sbjct: 1   HTVGVGGLVLNEKNEVLVVQERNKTP---NGWKLPGGLVDPGEDIFDGAVREVLEETGID 57

Query: 227 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286
           TEFV V+ FRHAH  AF KSDL+FIC LKPLS +I  D  EI  AKWMP  E++ QP+  
Sbjct: 58  TEFVSVVGFRHAHPGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITS 117

Query: 287 GDCMFKKVIDIC 298
              + + ++DIC
Sbjct: 118 E--VNRLILDIC 127

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 89.9 bits (223), Expect = 4e-22
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
            +  VG  ++N++ EVL+V+     P F GLW+LP G ++  E   + AVRE++EETG+ 
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSR-PPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLR 59

Query: 227 ---TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 283
                 + V+ +        +     F+  L     E + ++ E+   +W+P  E ++  
Sbjct: 60  VLLLLLLGVLEYPAPGRDGGEHVH-VFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELL 118

Query: 284 L 284
           L
Sbjct: 119 L 119

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 75.2 bits (185), Expect = 8e-17
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V VG  +++++  VL+V+      +  GLW+LP G ++  E + + A+REV+EETG+D +
Sbjct: 1   VAVGAVILDEDGRVLLVRRAD---SPGGLWELPGGGVEPGETLEEAAIREVREETGLDVD 57

Query: 229 -------FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 275
                  +         H V F      F+  L      +   D EI   +W+ 
Sbjct: 58  VLRLLGVYEVESPDEGEHAVVF-----VFLARLVGGEPTLLPPD-EISEVRWVT 105

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 68.2 bits (167), Expect = 5e-14
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 16/123 (13%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V VG  +I  N  +L+V+    N   AG W LP GF++  E + + A RE+KEETG+   
Sbjct: 11  VAVGA-LIVRNGRILLVRRA--NEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVR 67

Query: 229 FVEVIAFRH-------AHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
            +E++A           H+V+F    LFF    +P    +  D  +     W P  E  +
Sbjct: 68  VLELLAVFDDPGRDPRGHHVSF----LFFAA--EPEGELLAGDGDDAAEVGWFPLDELPE 121

Query: 282 QPL 284
            PL
Sbjct: 122 LPL 124

Length = 145

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 17/117 (14%)

Query: 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD- 226
             GV   V +D   VL+++      +  GLW LP G ++  E     AVREV+EETG+D 
Sbjct: 2   LPGVTAVVRDDEGRVLLIRR-----SDNGLWALPGGAVEPGESPADTAVREVREETGLDV 56

Query: 227 --TEFVEVIAFRHAHNVAF------QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 275
             T  V +      H V +      Q  D+ F C  + +  E++V D E     W  
Sbjct: 57  EVTGLVGIYTGPV-HVVTYPNGDVRQYLDITFRC--RVVGGELRVGDDESLDVAWFD 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 62.2 bits (152), Expect = 4e-12
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
           +V V   +  D  ++L+V+EK       GLW LP G+ D      +  V+EVKEETG+D 
Sbjct: 2   KVDVRAAIFKDG-KILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV 55

Query: 228 EFVEVIAF-----RHAHNVAFQKSDLFFIC 252
           +  ++ A       H     +Q   LFF+C
Sbjct: 56  KVRKLAAVDDRNKHHPPPQPYQVYKLFFLC 85

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           +G    V + +  VL+V+  Y        W LP G ++  E   + A RE+ EE G+   
Sbjct: 1   LGARAVVTDADGRVLLVRHTY-----GPGWYLPGGGLERGETFAEAARRELLEELGIRLA 55

Query: 229 FVEVIAFRHAHNVAFQKSD--LFFICMLKPLSTEIKVDDLEIKGAKWMP 275
            V        ++ A    D  + F    +  +  +     EI  A++ P
Sbjct: 56  -VVAELLGVYYHSASGSWDHVIVFRA--RADTQPVIRPSHEISEARFFP 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V VG  V      VL+V+    NP  AGLW  P G ++  E + + A+RE+ EETG++ E
Sbjct: 1   VAVGAVVF-RGGRVLLVRRA--NPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAE 57

Query: 229 F------VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282
                  V+VI    A  V F    + F+C  + L  E    D +   A+W+P  E    
Sbjct: 58  VGRLLTVVDVIERDAAGRVEFHYVLIDFLC--RYLGGEPVAGD-DALDARWVPLDELAAL 114

Query: 283 PL 284
            L
Sbjct: 115 SL 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD-TEF 229
           VG  ++N++ E+LVV+     P   G   LP GF+D  E   +  +RE++EETG+  TE 
Sbjct: 4   VGVLILNEDGELLVVRRAR-EPG-KGTLDLPGGFVDPGESAEEALIREIREETGLKVTEL 61

Query: 230 VEVIAFRHAH---NVAFQKSDLFFICMLKPLSTEIKVDDLE 267
             + +  + +    + +   DLFF+C +         DD+ 
Sbjct: 62  SYLFSLPNTYPYGGMEYDTLDLFFVCQVDDKPIVKAPDDVA 102

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
            V V   ++ D   +L+++         G W+LP G ++E E   +   REV EETG+  
Sbjct: 1   VVAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60

Query: 228 EFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF 279
                      H  +   + ++ + + + LS  +K+ D E +   W+   E 
Sbjct: 61  TPFLRYPSTVTHEDSGVYNVIYLVFVCEALSGAVKLSD-EHEEYAWVTLEEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 171 VGGFVINDNNEVLVVQE--KYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V   ++N+  EVL++QE  + C     G W LP G ++  E I +   REVKEETG+D E
Sbjct: 3   VAAVILNNQGEVLLIQEAKRSCR----GKWYLPAGRMEPGETIEEAVKREVKEETGLDCE 58

Query: 229 FVEVIA 234
              +++
Sbjct: 59  PTTLLS 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)

Query: 168 QVGVGGFVIN---DNNEVLVV-QEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 223
            +  GG V        EVL++ + +         W LP G ++  E   + AVREV+EET
Sbjct: 1   VLAAGGVVFRGSDGGIEVLLIHRPRG------DDWSLPKGKLEPGETPPEAAVREVEEET 54

Query: 224 GVDTEFVEVIAFRHAHNVAFQKSDL----FFICMLKPLSTEIKVD-DLEIKGAKWMPFME 278
           G+  E  + +        +  K       ++  +++ L  E     D E+   +W+P  E
Sbjct: 55  GIRAEVGDPLGTIRYWFSSSGKRVHKTVHWW--LMRALGGEFTPQPDEEVDEVRWLPPDE 112

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
           +VGVG FV+N   +VL+   K      AG W LP G ++  E   + A REV EETG+  
Sbjct: 2   RVGVGVFVLNPKGKVLL--GKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHI 59

Query: 228 EFVEVIAF 235
           E V+ +  
Sbjct: 60  ENVQFLTV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 170 GVGGFVINDNNEVLVVQEKYCNPA-FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
            VG  + N++ +V V            G W+ P G IDE E+  + A+RE++EETG+D +
Sbjct: 5   NVGVVLFNEDGKVFV-----GRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPD 59

Query: 229 FVEVIA 234
            VE+IA
Sbjct: 60  SVEIIA 65

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 15/119 (12%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           VG G  ++N+  EVL+ Q++    +  G W LP G ++  E + + A RE+KEETG++ E
Sbjct: 8   VGAGVILLNEQGEVLL-QKR----SDTGDWGLPGGAMELGESLEETARRELKEETGLEVE 62

Query: 229 FVEVIA-------FRHAHN-VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF 279
            +E++        +   +         L+++  +     ++  D  E    K+    E 
Sbjct: 63  ELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVF--GGKLVPDGDETLELKFFSLDEL 119

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)

Query: 173 GFVI----NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           G +I    N+  E L++Q  Y      G W  P G ++  E+  + A+RE +EETG+  E
Sbjct: 6   GAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAE 59

Query: 229 FVEVIA-FRHAHN---VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282
            + ++  F+   N       K+  +F+  L+P   E+K+ + E +  +W+P+ E +K 
Sbjct: 60  QLFIVLGFKETLNYQVRGKLKTVTYFLAELRP-DVEVKLSE-EHQDYRWLPYEEALKL 115

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 50.3 bits (120), Expect = 8e-08
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 172 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
           G  ++N+ N+VL+VQEK       GLW +P+G +++ E     AVRE  EETG+    V
Sbjct: 17  GAVILNERNDVLLVQEK--GGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV 73

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 30/127 (23%)

Query: 175 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 234
           VI  + ++L++Q+      + G W LP G I+  E   +   REV EETG+    VE+  
Sbjct: 6   VIPRDGKLLLIQKN--GGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLT---VEIGR 60

Query: 235 F--------------RHAHNVAFQKSDLFFICML---KPLSTEIKVDDLEIKGAKWMPFM 277
                            AH++       F+   +        E   D     GA W+P  
Sbjct: 61  RLGSASRYFYSPDGDYDAHHLCV-----FYDARVVGGALPVQEPGEDSH---GAAWLPLD 112

Query: 278 EFVKQPL 284
           E +++ L
Sbjct: 113 EAIERLL 119

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 48.6 bits (117), Expect = 3e-07
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
           V   +I+D+  +L+ Q         GLW+ P G ++  E   +  VRE++EE G++ E  
Sbjct: 4   VAAIIIDDDGRILIAQRPA-GKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG 62

Query: 231 EVIA-FRHA 238
           E++A   H 
Sbjct: 63  ELLATVEHD 71

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           VG G  ++ D+ ++L+V+     P  AG W +P G +D  E +    VRE++EETG+   
Sbjct: 3   VGCGAAILRDDGKLLLVKRLR-APE-AGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIH 60

Query: 229 FVEVIA 234
              ++ 
Sbjct: 61  STRLLC 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 178 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH 237
               VL+++    +  +AG W+  TG I++ E   + A REV EETG+D E + ++  R 
Sbjct: 13  GEGRVLLLRR---SDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLD-RG 68

Query: 238 AHNVAFQKSDLFFICMLKPLSTEIKVD-----DLEIKGAKWMPFMEFVKQ 282
           A     + +D   +    P +  +  D     D E    +W+P  E    
Sbjct: 69  ASIAFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAAL 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 16/145 (11%)

Query: 174 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGA-VREVKEETGVD------ 226
              +   EVL+ Q         GLW+LP G ++  EE+ + A  RE++EETG+       
Sbjct: 18  VGRDGPGEVLLAQR----RDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERL 73

Query: 227 ---TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDL--EIKGAKWMPFMEFVK 281
               EF        +      +                 +     E++  +W+P  E   
Sbjct: 74  ELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAA 133

Query: 282 QPLIQGDCMFKKVIDICIARLRKRY 306
             L +          + +       
Sbjct: 134 LVLAEDQVKRDAKKALLLLLFLALK 158

Length = 161

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
           VG  ++N   +V   + +         W+ P G ID  E   +   RE+ EE G+  E V
Sbjct: 11  VGIILLNRQGQVFWGR-RIGQG---HSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDV 66

Query: 231 EVIA 234
           E++A
Sbjct: 67  EILA 70

Length = 156

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 196 GLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE---VIAFRHAHNVAFQKSDLFFIC 252
           G W LP GF++  E   +GA+RE  EE G   E      V +  H   V      +F+  
Sbjct: 38  GFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVPHISQV-----YMFYRA 92

Query: 253 MLKPLSTEIKVDDLEIK 269
            L  L      + LE++
Sbjct: 93  RLLDLDFAPGPESLEVR 109

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 11/61 (18%)

Query: 173 GFVIND-----NNEVLVVQEKYCNPAFAG--LWKLPTGFIDESEEIFKGAVREVKEETGV 225
            FV  D     +  VL+V+ +    A  G  LW LP GF+++ E +    +RE++EETG+
Sbjct: 202 TFVTVDAVVVQSGHVLLVRRR----AEPGKGLWALPGGFLEQDETLLDACLRELREETGL 257

Query: 226 D 226
            
Sbjct: 258 K 258

Length = 340

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 175 VINDNNEVLVVQEKYCNPAFA-GLWKLPTGFID--ES-EEIFKGAV-REVKEETGVDTEF 229
           VI+  + +L+ +     P F  G++ L  GF++  ES EE    AV REVKEE G+    
Sbjct: 7   VIDGGDRILLAR----QPRFPPGMYSLLAGFVEPGESLEE----AVRREVKEEVGIR--- 55

Query: 230 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282
           V+ I +  +    F  S L      +  S EI VDD E++ A+W    + V+ 
Sbjct: 56  VKNIRYVGSQPWPF-PSSLMLGFTAEADSGEIVVDDDELEDARWFS-RDEVRA 106

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 198 WKLPTGFIDESEEIFKGAVREVKEETG-----VDTEFVEVIAFRHAH---NVAFQKSDLF 249
           +K P G +++ E+  +G +RE++EETG     V  +F      R         F     +
Sbjct: 24  YKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYY 83

Query: 250 FICMLKPLSTEIKVDDLEIK---GAKWMPFME 278
           ++C +       +++D E +      W+   E
Sbjct: 84  YLCEVDAELGAQQLEDYEAELGMKPIWINIHE 115

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 170 GVGGFVINDNNEVLVVQEKYCNPAFAG-LWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
            V     +D+ +V++V++ Y  P   G L +LP G ID  E+  + A RE++EETG +  
Sbjct: 4   AVAVLPYDDDGKVVLVRQ-YR-PPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAG 61

Query: 229 FVEVI 233
            +E +
Sbjct: 62  DLEKL 66

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 175 VINDNNEVLVVQEKYCNPAFAGL-WKLPTGFIDESEEIFKGAVREVKEETGVD---TEFV 230
           V+  +   L+V+E+       GL +  P G ++  E + + AVRE  EETG     T  +
Sbjct: 6   VVERDGRFLLVEEE----TDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALL 61

Query: 231 EVIAFRH-AHNVAFQKSDLF-FICMLKPLSTEIKVDDLEIKGAKWMPFMEF 279
            +  +     +  + +   F F   L     +  +D   I  A W+   E 
Sbjct: 62  GIYQWTAPDSDTTYLR---FAFAAELLEHLPDQPLDS-GIVRAHWLTLEEI 108

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 175 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225
            I D ++VL++  K       G W  P G ++  E   + A+RE+KEETG+
Sbjct: 7   FIKDPDKVLLLNRK--KGPGWGGWNGPGGKVEPGETPEECAIRELKEETGL 55

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 194 FAGLWKLPTGFIDESEEIFKGAVREVKEETGV--DTEFVEVIAFRHAHNVAF-QKSDLFF 250
             G W LP G +++ E+    AVRE +EE GV  D E + +    H        +  LFF
Sbjct: 24  MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGLFF 83

Query: 251 IC 252
             
Sbjct: 84  TV 85

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 181 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR 236
           + L+V  +   P   G   LP GFI+  E       RE+ EETGV  +  ++  F 
Sbjct: 15  DGLLVIRRGIEPG-RGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFD 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V VG  +   +  +L+V+       + GLW +P G ++  E + +   RE +EETG+   
Sbjct: 3   VTVGALIYAPDGRILLVRTT----KWRGLWGVPGGKVEWGETLEEALKREFREETGLKLR 58

Query: 229 FVEVIAFRHA-HNVAFQKSDLF----FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 283
            ++    + A  +  F K   F    F        TE+  ++ EI   +W+   E +  P
Sbjct: 59  DIKFAMVQEAIFSEEFHKPAHFVLFDFFARTDG--TEVTPNE-EIVEWEWVTPEEALDYP 115

Query: 284 L 284
           L
Sbjct: 116 L 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 194 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 253
           F G++ L  GF++  E + +   REV EE G+    V+ + +  +    F  S L    M
Sbjct: 166 FPGMYSLLAGFVEPGETLEQAVAREVFEEVGIK---VKNVRYVGSQPWPFPHS-LMLGFM 221

Query: 254 LKPLSTEIKVDDLEIKGAKW 273
            +  S EI  D+ E++ A+W
Sbjct: 222 AEYDSGEITPDEGELEDARW 241

Length = 279

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 19/124 (15%)

Query: 174 FVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV 232
           FV+N D  +VL+   +       G W  P G ID  E + + A+RE++EETG++   +  
Sbjct: 8   FVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP 62

Query: 233 IAFR------------HAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV 280
           ++                        DL F+ +           D E    +W P  E  
Sbjct: 63  LSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSD-ESDAVRWFPLDELA 121

Query: 281 KQPL 284
              L
Sbjct: 122 SLEL 125

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 195 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
              W+  TG ++E E   + A+REVKEETG+D 
Sbjct: 30  PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62

Length = 148

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 194 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 253
           + G W LP G  +  E   +  +RE+ EE G+      +  FR   + +   ++  F+  
Sbjct: 27  YPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVFVVP 86

Query: 254 LKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
           L      I   D E +  + M   EF+ 
Sbjct: 87  LTAREDAILFGD-EGQALRLMTVEEFLA 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 13/65 (20%)

Query: 175 VINDNNEVLVVQ-----EKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
           +IND  E+L+++     + Y        +  P G I+E E   + A RE  EE G+D   
Sbjct: 7   IINDQGEILLIRRIKPGKTY--------YVFPGGGIEEGETPEEAAKREALEELGLDVRV 58

Query: 230 VEVIA 234
            E+  
Sbjct: 59  EEIFL 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 172 GGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
           G  ++N++ ++VL+V+        +  W  P G I++ E+    A+REV EETG D
Sbjct: 5   GAIILNEDLDKVLLVKGW-----KSKSWSFPKGKINKDEDDHDCAIREVYEETGFD 55

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|200031 TIGR00586, mutt, mutator mutT protein

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
            Q    G + N+N E+++ + +     FA L + P G  +  E   +  VRE++EE G+ 
Sbjct: 3   LQQIAVGIIRNENGEIIITR-RADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIP 61

Query: 227 TEFVE 231
             F E
Sbjct: 62  QHFSE 66

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Lowering the threshold picks up members of MutT superfamily well [DNA metabolism, DNA replication, recombination, and repair]. Length = 128

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225
           VGV   + + + ++L+ +       F  +W  P G ++  E + +  +RE+ EETG+
Sbjct: 2   VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 175 VINDNNEVLVVQEKYCNPAFAGLW-KLPTGFIDESEEIFKGAVREVKEETGVDTE----- 228
           VI  N+++L+++         G+W  LP G  +  E +   A RE KEE G+D E     
Sbjct: 7   VIIKNDKILLIKHHDDG----GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLL 62

Query: 229 FV-EVIAFRHA--HNVAFQKSDLFFICMLK---PLSTEIKVDDLEIKGAKWMPFMEFVKQ 282
           FV E I           F + +L F C +K   P  T  K D  +I G +W+   E    
Sbjct: 63  FVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQI-GVEWLKLKELGDI 121

Query: 283 PL 284
           PL
Sbjct: 122 PL 123

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	100.0
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.88
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.83
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.82
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.82
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.81
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.8
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.8
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.8
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.8
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.8
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.8
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.8
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.79
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.79
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.79
PLN02325	144	nudix hydrolase	99.78
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.78
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.78
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.78
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.78
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.78
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.78
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.78
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.78
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.78
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.78
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.77
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.77
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.77
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.77
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.77
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.77
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.76
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.75
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.75
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.75
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.75
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.75
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.75
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.74
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.74
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.74
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.74
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.73
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.73
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.73
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.73
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.73
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.73
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.72
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.71
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.71
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.7
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.7
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.69
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.69
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.69
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.69
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.69
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.69
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.67
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.67
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.66
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.66
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.65
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.65
PRK10707	190	putative NUDIX hydrolase; Provisional	99.64
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.62
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.6
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.59
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.58
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.55
PRK08999	312	hypothetical protein; Provisional	99.54
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.53
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.51
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.5
PLN02709	222	nudix hydrolase	99.5
PLN03143	291	nudix hydrolase; Provisional	99.48
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.46
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.44
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.42
PLN02791	770	Nudix hydrolase homolog	99.32
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.29
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.25
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.09
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.07
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.97
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.87
PLN02839	372	nudix hydrolase	98.7
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.67
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.55
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	97.85
KOG4195	275	consensus Transient receptor potential-related cha	97.54
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.47
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.15
PRK10880	350	adenine DNA glycosylase; Provisional	96.85
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.38
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	95.24
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	95.13
COG4111	322	Uncharacterized conserved protein [General functio	94.68
PRK13910	289	DNA glycosylase MutY; Provisional	92.8
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	92.77
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	91.42
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	90.06
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	85.42
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	80.66

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-44  Score=330.44  Aligned_cols=267  Identities=51%  Similarity=0.836  Sum_probs=251.3

Q ss_pred             eecccceeecccCCCCcEEEcCCCCCCChhHHHHHHHHHHHHHHhcCceeEEEecCCccccchHHHHhccccccccCccc
Q 019517           68 FSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEY  147 (340)
Q Consensus        68 ~~~~~~~~~~~~d~~~g~~v~~~~~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~l~~~~~~l~~~a~~~~f~~h~~~~~y  147 (340)
                      ...+..++.|..|+|||++++.-..+.|+..|.+.|+.|+..|+..|++++|++++...+++++.|++.||.|||++.+|
T Consensus        15 ~~~~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~   94 (295)
T KOG0648|consen   15 MSVGSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLY   94 (295)
T ss_pred             cccchhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccc
Confidence            34556899999999999999997666699999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc
Q 019517          148 LMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT  227 (340)
Q Consensus       148 ~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~  227 (340)
                      +|++.|+++.+.++|.++.|+++++++|+|.+++|||++..++.....|.|++|+|.|++||++.++|+||++||||++.
T Consensus        95 ~~l~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~  174 (295)
T KOG0648|consen   95 VMLTSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDT  174 (295)
T ss_pred             eeeeeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcch
Confidence            99999999999999999999999999999988999999998777788999999999999999999999999999999999


Q ss_pred             eeeEEEEEEeeccCCCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517          228 EFVEVIAFRHAHNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       228 ~~~~~l~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~  305 (340)
                      ++.+.+.+++.|...+.  +.++||+|.+++.+-+++.+..|+..++|||++|+..++..+...+++.+...|++++...
T Consensus       175 ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~~~~~  254 (295)
T KOG0648|consen  175 EFVEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNRLEEF  254 (295)
T ss_pred             hhhhHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHHHhhh
Confidence            99999999999988877  8999999999999999999999999999999999999999888778888999999999999


Q ss_pred             cCCCCCCcCcccchhhhhhhhhhhcCCCC
Q 019517          306 YCGLYPHQLVSAFDGQTSSLYYNDSDTQD  334 (340)
Q Consensus       306 y~g~~~~~l~~~f~~~~~~ly~~~~~~~~  334 (340)
                      |.|+....+++++.++..+||+|..+...
T Consensus       255 ~~~~~~~~l~~~~~~k~~~ly~~~~~~~~  283 (295)
T KOG0648|consen  255 YLGLTAIVLTTTYTGKESYLYYNEDHANM  283 (295)
T ss_pred             cCCccceeccccccCcccccccccchhhh
Confidence            99999999999999999999999877543

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=3.1e-22  Score=166.41  Aligned_cols=126  Identities=59%  Similarity=0.995  Sum_probs=99.8

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      |.++|+++|++++++|||++++..   .++.|.+|||++++||++.+||+||++||||+.+.....++....+...+...
T Consensus         1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   77 (127)
T cd04670           1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKS   77 (127)
T ss_pred             CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCce
Confidence            568899999998899999988632   57899999999999999999999999999999998777776655544445556


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHH
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI  297 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~  297 (340)
                      .++|++.+......+..+++|+.+++|++++++.+.++.+.  +.+.+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~--~~~~~~~~  126 (127)
T cd04670          78 DLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE--VNRLILDI  126 (127)
T ss_pred             eEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH--HHHHHHhh
Confidence            67777777544444555678889999999999988877654  34555543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=8.7e-20  Score=151.20  Aligned_cols=111  Identities=21%  Similarity=0.334  Sum_probs=85.0

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--CCce
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQK  245 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~--~~~~  245 (340)
                      +++|+++|++.+++|||++|...  ...+.|.+|||++++||++.+||+||++||||+++....+++.......  ....
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHW   79 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeE
Confidence            57899999998899999998632  3578999999999999999999999999999999988887765543322  1223


Q ss_pred             EEEEEEEEEecCCCcc-cCCcCceeeEEEEeccccccC
Q 019517          246 SDLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~-~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ..++|++...  .+.. ..+++|+.+++|++++++++.
T Consensus        80 ~~~~f~~~~~--~~~~~~~~~~E~~~~~W~~~~~l~~~  115 (125)
T cd04679          80 VAPVYLAENF--SGEPRLMEPDKLLELGWFALDALPQP  115 (125)
T ss_pred             EEEEEEEeec--CCccccCCCccccEEEEeCHHHCCch
Confidence            3445666543  2222 235578999999999999763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.82  E-value=2.2e-19  Score=153.24  Aligned_cols=117  Identities=21%  Similarity=0.296  Sum_probs=87.6

Q ss_pred             cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeecc-C-
Q 019517          166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHN-V-  241 (340)
Q Consensus       166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~-~-  241 (340)
                      ++.++|+++|+|.+|+|||+||...  +.+|.|.+|||++++||++.+||+||++||||+++...  .+++...... . 
T Consensus        10 ~p~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~   87 (144)
T cd03430          10 TPLVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDN   87 (144)
T ss_pred             CCeEEEEEEEEeCCCeEEEEEccCC--CCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccc
Confidence            4568899999999899999999632  46899999999999999999999999999999998766  6665543211 0 


Q ss_pred             ----CC--ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          242 ----AF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       242 ----~~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                          ..  ....++|.|...  .+.+...++|+.+++|+++++++++...+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~  136 (144)
T cd03430          88 FFGDDFSTHYVVLGYVLKLS--SNELLLPDEQHSEYQWLTSDELLADDDVH  136 (144)
T ss_pred             cccCCCccEEEEEEEEEEEc--CCcccCCchhccEeEEecHHHHhcCCCcC
Confidence                11  123344555542  33444567899999999999999865433

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.82  E-value=3.2e-19  Score=154.66  Aligned_cols=116  Identities=15%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccCC--
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVA--  242 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~--~~~l~~~~~~~~~--  242 (340)
                      +.++|+++|.+++++|||+||.++  +.+|.|++|||++++||++.+||+||++||||+++..  ..+++........  
T Consensus        16 ~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~   93 (159)
T PRK15434         16 PLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF   93 (159)
T ss_pred             ceEEEEEEEECCCCEEEEEEccCC--CCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeeccccc
Confidence            347899999988899999999743  4679999999999999999999999999999998743  2455433221111  


Q ss_pred             ----Cc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          243 ----FQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       243 ----~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                          +.  ...++|.+..  ..+.+.++++|+.+++|++++++.++...+
T Consensus        94 ~~~~~~~~~i~~~f~~~~--~~g~~~~~~~E~~~~~W~~~~el~~~~~~~  141 (159)
T PRK15434         94 SGTDFTTHYVVLGFRLRV--AEEDLLLPDEQHDDYRWLTPDALLASDNVH  141 (159)
T ss_pred             CCCccceEEEEEEEEEEe--cCCcccCChHHeeEEEEEeHHHhhhccccC
Confidence                11  2233444443  345566667799999999999998865443

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.81  E-value=1.6e-19  Score=154.28  Aligned_cols=126  Identities=25%  Similarity=0.294  Sum_probs=90.7

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc--eeeEEEEEEe-------
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT--EFVEVIAFRH-------  237 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~--~~~~~l~~~~-------  237 (340)
                      ++++|++++++.+++|||++|..    .++.|++|||++|+||++.+||+||++||||+++  ....++....       
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   81 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF   81 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecC----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence            45789999999999999998852    3578999999999999999999999999999998  4433332110       


Q ss_pred             e------ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHH
Q 019517          238 A------HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  302 (340)
Q Consensus       238 ~------~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l  302 (340)
                      .      .........++|++...  . ...++.+|+.+++|++++++.++...+.   .+.+++.++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~f~~~~~--~-~~~~~~~E~~~~~W~~~~e~~~~~~~~~---~~~~l~~~~~~~  146 (148)
T PRK09438         82 PHWRHRYAPGVTRNTEHWFCLALP--H-ERPVVLTEHLAYQWLDAREAAALTKSWS---NAEAIEQLVIRL  146 (148)
T ss_pred             hhhhhccccccCCceeEEEEEecC--C-CCccccCcccceeeCCHHHHHHHhcChh---HHHHHHHHHHHh
Confidence            0      11112334466666542  1 2223445999999999999999876543   467777776654

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.80  E-value=6.6e-19  Score=152.29  Aligned_cols=127  Identities=22%  Similarity=0.297  Sum_probs=93.7

Q ss_pred             cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe--------
Q 019517          166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH--------  237 (340)
Q Consensus       166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~--------  237 (340)
                      .++++|+++++|.+|+|||++|..    .++.|.+|||++++||++.+||.||++||||+++....+++...        
T Consensus         6 ~~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~   81 (156)
T PRK00714          6 GYRPNVGIILLNRQGQVFWGRRIG----QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLP   81 (156)
T ss_pred             CCCCeEEEEEEecCCEEEEEEEcC----CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCc
Confidence            355789999999999999999862    25789999999999999999999999999999987777665431        


Q ss_pred             ------eccCCCceEEEEEEEEEecCCCcccC---CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          238 ------AHNVAFQKSDLFFICMLKPLSTEIKV---DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       238 ------~~~~~~~~~~~~f~~~~~~~~~~~~~---~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                            ......+...++|++........+.+   +++|+.+++|++++|++++..+..    +.+++.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~----r~~~~~~~~  149 (156)
T PRK00714         82 KRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFK----RDVYRRVLK  149 (156)
T ss_pred             HHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhh----HHHHHHHHH
Confidence                  01112233567788876443333333   346999999999999998766554    444444443

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=3e-19  Score=146.25  Aligned_cols=108  Identities=21%  Similarity=0.309  Sum_probs=83.1

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcce-eeEEEEEEeeccCCCceEEE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE-FVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~-~~~~l~~~~~~~~~~~~~~~  248 (340)
                      +|.++++++++++||++|..     .+.|.+|||++++||++.+||+||++||||+.+. ....++.............+
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~-----~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~   76 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTY-----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVI   76 (120)
T ss_pred             ceEEEEECCCCeEEEEEECC-----CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEE
Confidence            57889999889999999862     3389999999999999999999999999999998 77777765544333333344


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      +|.|..  .......+++|+.+++|+++++++++..
T Consensus        77 ~f~~~~--~~~~~~~~~~E~~~~~w~~~~~l~~~~~  110 (120)
T cd04680          77 VFRARA--DTQPVIRPSHEISEARFFPPDALPEPTT  110 (120)
T ss_pred             EEEecc--cCCCccCCcccEEEEEEECHHHCcccCC
Confidence            455544  3333345678999999999999988533

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.80  E-value=4.7e-19  Score=151.42  Aligned_cols=116  Identities=28%  Similarity=0.425  Sum_probs=86.9

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----ecc--
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----AHN--  240 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~-----~~~--  240 (340)
                      +++|++++++.+++|||++|.+.    ++.|.+|||++++||++.+||+||++||||+++....+++...     ..+  
T Consensus         3 ~~~v~~ii~~~~~~vLL~~r~~~----~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~   78 (147)
T cd03671           3 RPNVGVVLFNEDGKVFVGRRIDT----PGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPE   78 (147)
T ss_pred             CceEEEEEEeCCCEEEEEEEcCC----CCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhh
Confidence            46799999998899999999632    2899999999999999999999999999999987776665321     001  


Q ss_pred             ---C-----CCceEEEEEEEEEecCCCcccCC---cCceeeEEEEeccccccCCCCCC
Q 019517          241 ---V-----AFQKSDLFFICMLKPLSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       241 ---~-----~~~~~~~~f~~~~~~~~~~~~~~---~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                         .     ..+...++|++........+..+   ++|+.+++|++++++.++..++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~  136 (147)
T cd03671          79 LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFK  136 (147)
T ss_pred             hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhh
Confidence               0     11234466666664423333333   47999999999999999876543

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.80  E-value=4.8e-19  Score=148.94  Aligned_cols=117  Identities=22%  Similarity=0.185  Sum_probs=88.1

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      ..+|+++++++++++||+++. +.+..++.|.+|||++++||++.+||+||++||||+.+..+..++.............
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~-~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQY-RPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI   80 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEee-ecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence            467899999999999999885 4445678999999999999999999999999999999976666654443332223334


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      .+|++...........++.|+.+++|++++|+.++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~  118 (137)
T cd03424          81 HLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLAD  118 (137)
T ss_pred             EEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHc
Confidence            45555553322214456788999999999999876554

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=1.1e-18  Score=145.35  Aligned_cols=114  Identities=28%  Similarity=0.404  Sum_probs=87.2

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--CCCce
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAFQK  245 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~--~~~~~  245 (340)
                      +++|+++++|++++|||++|..+  ...+.|.+|||++++||++.+||+||++||||+++.....++......  .....
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHY   79 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCC--CCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEE
Confidence            57899999999899999999732  468899999999999999999999999999999988777776544322  12224


Q ss_pred             EEEEEEEEEecCCCccc-CCcCceeeEEEEeccccccCC
Q 019517          246 SDLFFICMLKPLSTEIK-VDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~leel~~~~  283 (340)
                      ..++|.|.......... .+.+|+.+++|++++++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~  118 (129)
T cd04678          80 VTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVD  118 (129)
T ss_pred             EEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence            55667776643222222 145778899999999999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.80  E-value=7.6e-19  Score=156.04  Aligned_cols=153  Identities=16%  Similarity=0.125  Sum_probs=112.2

Q ss_pred             HHHhcCceeE----EEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeCCceEEE
Q 019517          109 HWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLV  184 (340)
Q Consensus       109 ~w~~~~~~~v----W~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~~~VLL  184 (340)
                      .|+..+++.|    |+++...+..+++   +....|....                .+    +..+|.+++++++++|||
T Consensus         7 ~~~~~~~~~v~~~~~~~v~~~~~~~~~---G~~~~~~~v~----------------~~----~~~~v~v~~~~~~~~vlL   63 (185)
T PRK11762          7 KPEILNRETVAKSRLFRVESVDLEFSN---GVERVYERMR----------------PS----GRGAVMIVPILDDDTLLL   63 (185)
T ss_pred             CCEEeeEEEEEeCCEEEEEEEEEEcCC---CCEEEEEEEe----------------cC----CCCEEEEEEEeCCCEEEE
Confidence            6777777777    9999888877776   3323232220                00    113577777888889999


Q ss_pred             EEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcccCC
Q 019517          185 VQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVD  264 (340)
Q Consensus       185 vqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  264 (340)
                      +++. +++...+.|++|||.+|+||++.+||+||++||||+++..+..++.+...++......++|++..... .....+
T Consensus        64 vrq~-r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~-~~~~~~  141 (185)
T PRK11762         64 IREY-AAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYP-ERLEGD  141 (185)
T ss_pred             EEee-cCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEcccc-ccCCCC
Confidence            9985 67778889999999999999999999999999999999999998877766665555555566553221 122345


Q ss_pred             cCceeeEEEEeccccccCCCCC
Q 019517          265 DLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       265 ~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      +.|..++.|+|++++.++....
T Consensus       142 e~E~i~~~~~~~~e~~~~~~~g  163 (185)
T PRK11762        142 EPEPLEVVRWPLADLDELLARP  163 (185)
T ss_pred             CCceeEEEEEcHHHHHHHHHcC
Confidence            6777899999999998765543

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.80  E-value=1.1e-18  Score=147.82  Aligned_cols=116  Identities=20%  Similarity=0.318  Sum_probs=79.9

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEE--EE-----eecc-CC
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA--FR-----HAHN-VA  242 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~--~~-----~~~~-~~  242 (340)
                      +.+.+++.+++|||+||...+...+|.|++|||++++||++.+||+||++||||+++....+..  +.     .... ..
T Consensus         6 ~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T PRK15472          6 IVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGR   85 (141)
T ss_pred             EEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCC
Confidence            4455555678999999876566678999999999999999999999999999999875443221  10     0001 11


Q ss_pred             CceE-EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          243 FQKS-DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       243 ~~~~-~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      .... .+++++.+....+.+.+ ++|+.+++|++++|+.++++.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l~~~~~  130 (141)
T PRK15472         86 KEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHYDLNVA  130 (141)
T ss_pred             ceeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccccccHH
Confidence            1111 22233333333344443 47899999999999999987664

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1e-18  Score=145.53  Aligned_cols=108  Identities=26%  Similarity=0.451  Sum_probs=81.5

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--C--Cce
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--A--FQK  245 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~--~--~~~  245 (340)
                      +|++++++++++|||++|...  ..+|.|.+|||++++||++.+||+||++||||+++.....++.......  .  ...
T Consensus         3 av~~~i~~~~~~vLL~~r~~~--~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   80 (130)
T cd04681           3 AVGVLILNEDGELLVVRRARE--PGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDT   80 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCC--CCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEE
Confidence            578889998899999998633  3578999999999999999999999999999999987777654322111  1  112


Q ss_pred             EEEEEEEEEecCCCcccCCcCceeeEEEEecccccc
Q 019517          246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK  281 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~  281 (340)
                      ..++|+|...  ......+.+|+.+++|++++++..
T Consensus        81 ~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~  114 (130)
T cd04681          81 LDLFFVCQVD--DKPIVKAPDDVAELKWVVPQDIEL  114 (130)
T ss_pred             EEEEEEEEeC--CCCCcCChHHhheeEEecHHHCCc
Confidence            3346666653  233444567899999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.79  E-value=1.2e-18  Score=144.52  Aligned_cols=120  Identities=31%  Similarity=0.475  Sum_probs=91.8

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCC---c
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF---Q  244 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~---~  244 (340)
                      +++|++++++.+++|||++|.......++.|.+|||++++||++.+||+||+.||||+++.....+..........   +
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T PF00293_consen    2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG   81 (134)
T ss_dssp             EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred             CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence            4779999999989999999975433467999999999999999999999999999999986666655433322222   2


Q ss_pred             eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      ...++|++...........+..|+.+++|++++++.++.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  124 (134)
T PF00293_consen   82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGR  124 (134)
T ss_dssp             EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTH
T ss_pred             EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcc
Confidence            4556666665544334555556999999999999999876553

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=2e-18  Score=141.70  Aligned_cols=113  Identities=28%  Similarity=0.473  Sum_probs=83.2

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC----Cc
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ  244 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~----~~  244 (340)
                      ++|+++++++ ++|||++|.+.  .+++.|.+|||++++||++.+||+||++||||+++.....++........    ..
T Consensus         1 ~~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   77 (122)
T cd04673           1 VAVGAVVFRG-GRVLLVRRANP--PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVE   77 (122)
T ss_pred             CcEEEEEEEC-CEEEEEEEcCC--CCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccc
Confidence            3577888875 79999998632  36789999999999999999999999999999998777776654432211    11


Q ss_pred             --eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          245 --KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       245 --~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                        ...+.|.+..  ..+.. .+++|+.+++|++++++.++++.+.
T Consensus        78 ~~~~~~~~~~~~--~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~  119 (122)
T cd04673          78 FHYVLIDFLCRY--LGGEP-VAGDDALDARWVPLDELAALSLTES  119 (122)
T ss_pred             eEEEEEEEEEEe--CCCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence              2223344443  33333 3457889999999999999887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.78  E-value=1.5e-18  Score=148.12  Aligned_cols=117  Identities=23%  Similarity=0.338  Sum_probs=85.3

Q ss_pred             CCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--
Q 019517          163 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--  240 (340)
Q Consensus       163 ~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~--  240 (340)
                      .+++++++|+++++++ ++|||++|...  .+.|.|.+|||+++.||++.+||+||++||||+++....+++......  
T Consensus         4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~--~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~   80 (144)
T PLN02325          4 GEPIPRVAVVVFLLKG-NSVLLGRRRSS--IGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE   80 (144)
T ss_pred             CCCCCeEEEEEEEEcC-CEEEEEEecCC--CCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence            3456678899888875 69999998632  356899999999999999999999999999999998888877643221  


Q ss_pred             --CCCceEEEEEEEEEecCCC-cccCCcCceeeEEEEeccccccC
Q 019517          241 --VAFQKSDLFFICMLKPLST-EIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       241 --~~~~~~~~~f~~~~~~~~~-~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                        .......++|.+....... ....+++|+.+++|+++++++..
T Consensus        81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~  125 (144)
T PLN02325         81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP  125 (144)
T ss_pred             CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence              1122344556665432221 12234456788999999999874

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.78  E-value=2.4e-18  Score=146.35  Aligned_cols=116  Identities=23%  Similarity=0.273  Sum_probs=85.8

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC-CCce
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV-AFQK  245 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~-~~~~  245 (340)
                      ...+|+++|++.+++|||++++.  +..++.|++|||++++||++.+||+||++||||+++....+++.+..... ....
T Consensus        12 ~~~av~~vv~~~~~~vLL~~r~~--~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   89 (142)
T cd04700          12 EARAAGAVILNERNDVLLVQEKG--GPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVLV   89 (142)
T ss_pred             eeeeEEEEEEeCCCcEEEEEEcC--CCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcEE
Confidence            34778999999888999998753  34679999999999999999999999999999999988777765432211 1112


Q ss_pred             EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517          246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      ..++|++........+ ...+|+.+++|++++++.++...
T Consensus        90 ~~~~f~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~  128 (142)
T cd04700          90 LRHVWLAEPEGQTLAP-KFTDEIAEASFFSREDVAQLYAQ  128 (142)
T ss_pred             EEEEEEEEecCCcccc-CCCCCEEEEEEECHHHhhhcccc
Confidence            3355666653221122 23478999999999999987543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=1.8e-18  Score=143.46  Aligned_cols=120  Identities=23%  Similarity=0.364  Sum_probs=87.0

Q ss_pred             eEEEEEEEeCC---ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC----
Q 019517          169 VGVGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV----  241 (340)
Q Consensus       169 v~V~~lv~~~~---~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~----  241 (340)
                      .++++++++.+   ++|||+++..     .+.|.+|||++++||++.+||+||++||||+++.....++.......    
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~-----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   76 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPR-----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGK   76 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCC-----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCC
Confidence            45788888865   8999999862     37999999999999999999999999999999987776654433222    


Q ss_pred             CCceEEEEEEEEEecCCCcccC-CcCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517          242 AFQKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  298 (340)
Q Consensus       242 ~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~  298 (340)
                      .......+|.+...  ...... +++|+.+++|++++++.++...+.   .+.+++.+
T Consensus        77 ~~~~~~~~~~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~  129 (131)
T cd03673          77 RVHKTVHWWLMRAL--GGEFTPQPDEEVDEVRWLPPDEARDRLSYPN---DRELLRAA  129 (131)
T ss_pred             CcceEEEEEEEEEc--CCCcccCCCCcEEEEEEcCHHHHHHHcCCHh---HHHHHHHh
Confidence            22234445555542  333333 568899999999999987654332   35666554

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.3e-18  Score=143.76  Aligned_cols=113  Identities=18%  Similarity=0.230  Sum_probs=78.9

Q ss_pred             EEEEEeCCceEEEEEeccC-CCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          172 GGFVINDNNEVLVVQEKYC-NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       172 ~~lv~~~~~~VLLvqr~~~-~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      +++++.++|+|||++|... ...++|.|.+|||+++.||++.+||+||++||||++++...+...............++|
T Consensus         4 ~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f   83 (122)
T cd04682           4 ALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVF   83 (122)
T ss_pred             EEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEEE
Confidence            3334444599999999754 346789999999999999999999999999999999864333222111111223344556


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      .+...... ....+++|+.+++|++++|+.+....
T Consensus        84 ~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~  117 (122)
T cd04682          84 VVPLTARE-DAILFGDEGQALRLMTVEEFLAHEDA  117 (122)
T ss_pred             EEEEecCC-CccccCchhheeecccHHHHhhcccc
Confidence            66553222 24456789999999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.1e-18  Score=143.72  Aligned_cols=112  Identities=25%  Similarity=0.369  Sum_probs=82.3

Q ss_pred             cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec------
Q 019517          166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH------  239 (340)
Q Consensus       166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~------  239 (340)
                      .+.++|++++++.+++|||++|.     ..+.|.+|||++++||++.+||+||++||||+++.....++.+...      
T Consensus         5 ~~~~~~~~~v~~~~~~vLL~~r~-----~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04677           5 LILVGAGVILLNEQGEVLLQKRS-----DTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKP   79 (132)
T ss_pred             ccccceEEEEEeCCCCEEEEEec-----CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecC
Confidence            34577899999988999999886     2378999999999999999999999999999999887777543211      


Q ss_pred             -cCCC-ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          240 -NVAF-QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       240 -~~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                       .... ....+++++..  ....+..+.+|+.+++|++++++.++..
T Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~  124 (132)
T cd04677          80 NGDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELIN  124 (132)
T ss_pred             CCCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchh
Confidence             1111 12223333332  2333445678899999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.78  E-value=1.8e-18  Score=142.90  Aligned_cols=114  Identities=23%  Similarity=0.335  Sum_probs=83.9

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-CC-----C
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-VA-----F  243 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~-~~-----~  243 (340)
                      +|.++++++ ++|||+++...+  .++.|.+|||++++||++.+||+||++||||+++....+++...... ..     .
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   78 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA   78 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence            577888876 899999997432  67999999999999999999999999999999988777776543221 11     1


Q ss_pred             ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          244 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       244 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      ....++|.+.............+|..+++|++++++.+....+
T Consensus        79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~  121 (128)
T cd04684          79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSP  121 (128)
T ss_pred             cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCH
Confidence            2344566666532211113455788899999999998776544

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=3.2e-18  Score=144.70  Aligned_cols=121  Identities=22%  Similarity=0.474  Sum_probs=85.8

Q ss_pred             eEEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE------EeeccC
Q 019517          169 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF------RHAHNV  241 (340)
Q Consensus       169 v~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~------~~~~~~  241 (340)
                      .+|+++++|++ ++|||++|.     ..|.|.+|||++++||++.+||+||++||||+++......++      ......
T Consensus         3 ~~~~~~v~~~~~~~vLLv~r~-----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   77 (138)
T cd03674           3 FTASAFVVNPDRGKVLLTHHR-----KLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH   77 (138)
T ss_pred             EEEEEEEEeCCCCeEEEEEEc-----CCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence            45788899887 999999986     257899999999999999999999999999998765554321      111111


Q ss_pred             C------CceEEEEEEEEEecCCCccc-CCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          242 A------FQKSDLFFICMLKPLSTEIK-VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       242 ~------~~~~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                      .      .....+.|+|...  .+... .+++|+.+++|++++++..+++...   .+.++..++
T Consensus        78 ~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~i~~~~  137 (138)
T cd03674          78 PKRGVPGHLHLDLRFLAVAP--ADDVAPPKSDESDAVRWFPLDELASLELPED---VRRLVEKAL  137 (138)
T ss_pred             CCCCCCCcEEEEEEEEEEcc--CccccCCCCCcccccEEEcHHHhhhccCCHH---HHHHHHHHh
Confidence            0      1123345666542  23333 2567999999999999987766442   477777664

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=3.5e-18  Score=140.34  Aligned_cols=112  Identities=23%  Similarity=0.378  Sum_probs=80.8

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccCC-CceE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNVA-FQKS  246 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~--~~~~l~~~~~~~~~-~~~~  246 (340)
                      +|.+++.+ +++|||++|. +.+..+|.|.+|||++++||++.+||+||++||||+.+.  .+.+++........ ....
T Consensus         2 ~v~~vi~~-~~~vLL~~r~-~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~   79 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRA-NTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRI   79 (120)
T ss_pred             cEEEEEEE-CCEEEEEEcc-CCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEE
Confidence            46777765 5799999986 344458999999999999999999999999999999986  44555544333222 2344


Q ss_pred             EEEEEEEEecCCCcc-cCCcCceeeEEEEeccccccCCCC
Q 019517          247 DLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~-~~~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      .++|.+...  .+.. ..+++|+.+++|++++++.....+
T Consensus        80 ~~~f~~~~~--~~~~~~~~~~e~~~~~W~~~~~l~~~~~~  117 (120)
T cd04683          80 GLFFTVRRW--SGEPRNCEPDKCAELRWFPLDALPDDTVD  117 (120)
T ss_pred             EEEEEEEee--cCccccCCCCcEeeEEEEchHHCcchhcc
Confidence            456666542  2222 234578899999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2e-18  Score=143.13  Aligned_cols=112  Identities=24%  Similarity=0.345  Sum_probs=81.9

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--CCC-ce
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAF-QK  245 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~--~~~-~~  245 (340)
                      ++|+++|++.+++|||+|+..    ..|.|.+|||++++||++.+||+||++||||+++....++.......  ... ..
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   78 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA   78 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence            678899999889999998741    46899999999999999999999999999999987776654422211  111 11


Q ss_pred             E--EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          246 S--DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       246 ~--~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      .  .+.|.+..  ....+. .++|+.+++|++++++.++++.+.
T Consensus        79 ~~~~~~~~~~~--~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~  119 (125)
T cd04696          79 HFVLFDFFART--DGTEVT-PNEEIVEWEWVTPEEALDYPLNSF  119 (125)
T ss_pred             EEEEEEEEEEe--cCCccc-CCcccceeEEECHHHHhcCCCCHH
Confidence            1  22334443  223333 346899999999999999887653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=5.3e-18  Score=140.23  Aligned_cols=108  Identities=21%  Similarity=0.326  Sum_probs=81.6

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      |++++++++++|||++|...   ..+.|.+|||++++||++.+||+||++||||+++....+++....    .+...++|
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f   75 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYF   75 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEE
Confidence            67788887789999998532   358899999999999999999999999999999977676665443    12345677


Q ss_pred             EEEEecCCCcccC---------CcCceeeEEEEeccccccCCCCCC
Q 019517          251 ICMLKPLSTEIKV---------DDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       251 ~~~~~~~~~~~~~---------~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      .|....  +.+..         ++.++.+++|+++++++.+++.+.
T Consensus        76 ~~~~~~--g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p~  119 (121)
T cd04669          76 LARVIS--GKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRPE  119 (121)
T ss_pred             EEEEEC--CeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCCC
Confidence            776532  22211         134567899999999999887653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=5.3e-18  Score=139.86  Aligned_cols=112  Identities=30%  Similarity=0.475  Sum_probs=82.8

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee--c--cCC--
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA--H--NVA--  242 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~--~--~~~--  242 (340)
                      .+|+++++++++++||++|..     .+.|.+|||++++||++.+||+||++||||+++....+++....  +  ...  
T Consensus         3 ~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   77 (129)
T cd04676           3 PGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNG   77 (129)
T ss_pred             ceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCC
Confidence            568888899889999999862     38999999999999999999999999999999877666543211  1  111  


Q ss_pred             --CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          243 --FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       243 --~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                        .....++|++...  ++....+..|..+++|++++++.++.++..
T Consensus        78 ~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~el~~~~~~~~  122 (129)
T cd04676          78 DVRQYLDITFRCRVV--GGELRVGDDESLDVAWFDPDGLPPLLMHPS  122 (129)
T ss_pred             CcEEEEEEEEEEEee--CCeecCCCCceeEEEEEChhhCccccCCHh
Confidence              1233344555442  333334567888999999999999877654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=5.7e-18  Score=142.24  Aligned_cols=122  Identities=19%  Similarity=0.267  Sum_probs=86.5

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      +.+++.++ ++|||++|..++  ..+.|.+|||++++||++.+||+||++||||+++....+++.............+.+
T Consensus         4 ~~~~i~~~-~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03427           4 TLCFIKDP-DKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF   80 (137)
T ss_pred             EEEEEEEC-CEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence            44555554 899999997433  688999999999999999999999999999999988887766554333212223333


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                      ++......+... +.+|..+++|++++++.++++.+.   .+.+++.++
T Consensus        81 ~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~  125 (137)
T cd03427          81 VFLATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPG---DREWLPLML  125 (137)
T ss_pred             EEEECCcccccC-CCCccccceEEcHhhcccccCCCC---cHHHHHHHh
Confidence            333333333333 345667899999999998877654   256666655

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.77  E-value=2.3e-18  Score=147.20  Aligned_cols=110  Identities=23%  Similarity=0.300  Sum_probs=75.2

Q ss_pred             EEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          170 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       170 ~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      .+++++++++ ++|||+++.     ..+.|+||||++|+||++.+||+||++||||+.+........+. .....+....
T Consensus         3 ~~gaii~~~~~~~vLLvr~~-----~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~-~~~~~~~~~~   76 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGW-----KSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYI-ELIIRGQNVK   76 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEec-----CCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceee-ecccCCcEEE
Confidence            4788888865 799999985     23489999999999999999999999999999986532211111 1112223334


Q ss_pred             EEEEEEecCCCcccC-CcCceeeEEEEeccccccCCCC
Q 019517          249 FFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      +|++..........+ +++|+.+++|++++++.++...
T Consensus        77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~  114 (145)
T cd03672          77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK  114 (145)
T ss_pred             EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence            444432221122222 3578999999999999987554

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=2.3e-18  Score=143.25  Aligned_cols=112  Identities=19%  Similarity=0.333  Sum_probs=85.4

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      ++.++++|.+++|||++|.......+|.|++ |||++++||++.+||+||++||||+++..+..++.+............
T Consensus         2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~   81 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK   81 (126)
T ss_pred             eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence            4788999999999999887555557899999 699999999999999999999999999876666554433222222334


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      +|.+..   ...+.++++|+.+++|++++++.++..
T Consensus        82 ~f~~~~---~~~~~~~~~E~~~~~w~~~~el~~~~~  114 (126)
T cd04697          82 VFSCVY---DGPLKLQEEEVEEITWLSINEILQFKE  114 (126)
T ss_pred             EEEEEE---CCCCCCCHhHhhheEEcCHHHHHHHhh
Confidence            455543   234556678999999999999988654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=8.6e-18  Score=139.02  Aligned_cols=111  Identities=29%  Similarity=0.506  Sum_probs=84.7

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-----
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-----  242 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~-----  242 (340)
                      .++|+++|+++ ++|||++++     ..+.|.+|||++++||++.+||+||++||||+.+....++++.......     
T Consensus         2 ~~~v~~~i~~~-~~vLL~~~~-----~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~   75 (123)
T cd04672           2 KVDVRAAIFKD-GKILLVREK-----SDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQP   75 (123)
T ss_pred             cceEEEEEEEC-CEEEEEEEc-----CCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCc
Confidence            47789999986 799999986     2689999999999999999999999999999998766777665432211     


Q ss_pred             CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      .....++|+|...  ...+... +|+.+++|++++++.++.++..
T Consensus        76 ~~~~~~~f~~~~~--~~~~~~~-~E~~~~~W~~~~el~~l~~~~~  117 (123)
T cd04672          76 YQVYKLFFLCEIL--GGEFKPN-IETSEVGFFALDDLPPLSEKRN  117 (123)
T ss_pred             eEEEEEEEEEEec--CCcccCC-CceeeeEEECHHHCcccccCCc
Confidence            1223455666653  3344444 7899999999999998876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.77  E-value=2.9e-18  Score=148.32  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=87.0

Q ss_pred             EEEEEEEeCC--ceEEEEEeccCCCCCCCceEcceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          170 GVGGFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       170 ~V~~lv~~~~--~~VLLvqr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      +|.+++.+.+  ++|||+||......++|.|++|||++++| |++.+||+||++||||+++.....++.........+..
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~   83 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV   83 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence            4666677654  69999999755445789999999999999 99999999999999999998887777654333333444


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      ...|++..... ..+.++++|+.+++|++++++.+...
T Consensus        84 v~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~  120 (157)
T cd03426          84 VTPVVGLVPPP-LPLVLNPDEVAEVFEVPLSFLLDPAN  120 (157)
T ss_pred             EEEEEEEECCC-CCCCCCHHHhheeEEEcHHHHhCcCC
Confidence            45566655332 34556777999999999999988643

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.77  E-value=8.9e-18  Score=140.67  Aligned_cols=125  Identities=20%  Similarity=0.223  Sum_probs=85.5

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc--eEE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--KSD  247 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~--~~~  247 (340)
                      +|++++. .++++||++|.+.   .++.|.+|||++++||++.+||.||++||||+++....+++.........+  ...
T Consensus         2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   77 (134)
T cd03675           2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLR   77 (134)
T ss_pred             eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEE
Confidence            4666665 4579999998632   568999999999999999999999999999999987777665433222112  223


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                      ++|++..... ......++|+.++.|++++++.++..........+.+..++
T Consensus        78 ~~f~~~~~~~-~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l  128 (134)
T cd03675          78 FAFAAELLEH-LPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYL  128 (134)
T ss_pred             EEEEEEECCC-CCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHH
Confidence            4565655321 11113346889999999999998863222223455555554

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=8e-18  Score=138.32  Aligned_cols=108  Identities=23%  Similarity=0.304  Sum_probs=78.2

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      |+++++++ ++|||++|.......+|.|.+|||++++||++.+||+||++||||+++.....+........ ......+|
T Consensus         3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~   80 (117)
T cd04691           3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY   80 (117)
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence            44555554 89999998644335789999999999999999999999999999999766665554433222 22334455


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      .+..  ..+.+  ..+|+.+++|+++++++.++.
T Consensus        81 ~~~~--~~~~~--~~~E~~~~~W~~~~~l~~~~~  110 (117)
T cd04691          81 VVTF--WQGEI--PAQEAAEVHWMTANDIVLASE  110 (117)
T ss_pred             EEEE--ecCCC--CcccccccEEcCHHHcchhhh
Confidence            5543  23333  347899999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.6e-17  Score=138.32  Aligned_cols=114  Identities=25%  Similarity=0.406  Sum_probs=80.0

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--------
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--------  240 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~--------  240 (340)
                      ++|+++|++ +++|||+++.. .  ..+.|.+|||++++||++.+||+||+.||||+.+....++.......        
T Consensus         2 ~~a~~iv~~-~~~vLl~~r~~-~--~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~   77 (128)
T cd04687           2 NSAKAVIIK-NDKILLIKHHD-D--GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELP   77 (128)
T ss_pred             cEEEEEEEE-CCEEEEEEEEc-C--CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCC
Confidence            567888886 57999999852 2  35789999999999999999999999999999987665554432211        


Q ss_pred             CCCceEEEEEEEEEecCCC-cc-cCCcCceeeEEEEeccccccCCCCC
Q 019517          241 VAFQKSDLFFICMLKPLST-EI-KVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       241 ~~~~~~~~~f~~~~~~~~~-~~-~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      .......++|+|....... .. ...+.|..+++|++++++.++++.+
T Consensus        78 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p  125 (128)
T cd04687          78 GHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP  125 (128)
T ss_pred             CceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence            1122344566666532111 11 1123456799999999999988765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2e-17  Score=137.47  Aligned_cols=108  Identities=30%  Similarity=0.456  Sum_probs=80.4

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      |++++++.+++|||++|..+  ..++.|.+|||++++||++.+||+||++||||+++....++......   .....++|
T Consensus         3 ~~~vv~~~~~~vLl~~r~~~--~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~f   77 (123)
T cd04671           3 VAAVILNNQGEVLLIQEAKR--SCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFVF   77 (123)
T ss_pred             EEEEEEcCCCEEEEEEecCC--CCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEEE
Confidence            67788888899999998632  35789999999999999999999999999999999888777654321   22344555


Q ss_pred             EEEEecCCCcccC---CcCceeeEEEEeccccccCCCCC
Q 019517          251 ICMLKPLSTEIKV---DDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       251 ~~~~~~~~~~~~~---~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      .|...  ++.+..   ++.|+.+++|+++++++ +++..
T Consensus        78 ~a~~~--~g~~~~~~~~~~e~~~~~W~~~~el~-~~~~~  113 (123)
T cd04671          78 TGNIT--GGDLKTEKEADSESLQARWYSNKDLP-LPLRA  113 (123)
T ss_pred             EEEEe--CCeEccCCCCCcceEEEEEECHHHCC-Cccch
Confidence            55543  232222   34678899999999993 44433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.2e-17  Score=138.10  Aligned_cols=114  Identities=24%  Similarity=0.344  Sum_probs=80.9

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC--CceE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA--FQKS  246 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~--~~~~  246 (340)
                      ++|+++|++++++|||++|.......+|.|++|||++++||++.+||+||++||||+++.....+.....+...  ....
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI   81 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence            46788888877999999997444346899999999999999999999999999999998776664322223222  1222


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      .++|.+..  ... ...+++|..+++|++++++..+.++
T Consensus        82 ~~~~~~~~--~~~-~~~~~~e~~~~~w~~~~el~~~~~~  117 (129)
T cd04699          82 YLVFVCEA--LSG-AVKLSDEHEEYAWVTLEELAILKAD  117 (129)
T ss_pred             EEEEEeee--cCC-cccCChhheEEEEecHHHhhhhhcc
Confidence            23344332  222 2234568889999999998655443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.75  E-value=1.9e-17  Score=146.46  Aligned_cols=130  Identities=16%  Similarity=0.208  Sum_probs=90.3

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      .++.++|+|++++|||++|.......+|.|. +|||++++||++.+||+|||+||||+.+.....++.+...........
T Consensus        38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~  117 (180)
T PRK15393         38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWG  117 (180)
T ss_pred             EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEE
Confidence            4577888998899999988644445577775 799999999999999999999999998766555544333222222223


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCC--CCCCCchHHHHHHHHHHHHhc
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP--LIQGDCMFKKVIDICIARLRK  304 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~--~~~~~~~~~~il~~~l~~l~~  304 (340)
                      .+|.+..   .+...++++|+.+++|++++++.++.  +.+.   ....+..++.+..+
T Consensus       118 ~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~---~~~~l~~~l~~~~~  170 (180)
T PRK15393        118 ALFSCVS---HGPFALQEEEVSEVCWMTPEEITARCDEFTPD---SLKALALWLTRNAK  170 (180)
T ss_pred             EEEEEEe---CCCCCCChHHeeEEEECCHHHHhhhhhhcCcc---HHHHHHHHHHhhcc
Confidence            3444443   24455677899999999999999873  3322   23555555555443

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.75  E-value=2.2e-17  Score=141.20  Aligned_cols=116  Identities=28%  Similarity=0.474  Sum_probs=84.1

Q ss_pred             cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-Cc
Q 019517          166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-FQ  244 (340)
Q Consensus       166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~-~~  244 (340)
                      .+.++|++++...+ +|||++|..  .+..|.|.+|||++|.||++++||+||++||||+++...++++.+...... .+
T Consensus         8 ~p~~~v~~~i~~~~-~iLLvrR~~--~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r~   84 (145)
T COG1051           8 TPLVAVGALIVRNG-RILLVRRAN--EPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPRG   84 (145)
T ss_pred             CcceeeeEEEEeCC-EEEEEEecC--CCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCce
Confidence            44577888887654 999999974  347789999999999999999999999999999999889988877655432 22


Q ss_pred             eEE-EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517          245 KSD-LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       245 ~~~-~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      ... ++|+... ........+.++...+.|+++++++.++..
T Consensus        85 ~~v~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~  125 (145)
T COG1051          85 HHVSFLFFAAE-PEGELLAGDGDDAAEVGWFPLDELPELPLP  125 (145)
T ss_pred             eEEEEEEEEEe-cCCCcccCChhhHhhcceecHhHccccccc
Confidence            222 2222222 222222233357789999999999986443

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.75  E-value=2.5e-17  Score=153.32  Aligned_cols=133  Identities=21%  Similarity=0.263  Sum_probs=97.8

Q ss_pred             CCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 019517          159 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA  238 (340)
Q Consensus       159 ~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~  238 (340)
                      |....++.+.++|.++|. ++++|||+++.. .  ..|.|.+|||++|+||++++||+||++||||+++..+.+++....
T Consensus       123 c~~~~yp~~~paViv~V~-~~~~iLL~rr~~-~--~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~  198 (256)
T PRK00241        123 CRERYYPRIAPCIIVAVR-RGDEILLARHPR-H--RNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPW  198 (256)
T ss_pred             CCCEECCCCCCEEEEEEE-eCCEEEEEEccC-C--CCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEee
Confidence            444555556666666555 458999999863 2  278999999999999999999999999999999988887765422


Q ss_pred             ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517          239 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  301 (340)
Q Consensus       239 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~  301 (340)
                       ... ....+.|.+..  ..+++.++++|+.+++|++++|++.++...  .+.+++++.++++
T Consensus       199 -~~p-~~lm~~f~a~~--~~~~~~~~~~Ei~~a~W~~~del~~lp~~~--sia~~li~~~~~~  255 (256)
T PRK00241        199 -PFP-HSLMLGFHADY--DSGEIVFDPKEIADAQWFRYDELPLLPPSG--TIARRLIEDTVAL  255 (256)
T ss_pred             -cCC-CeEEEEEEEEe--cCCcccCCcccEEEEEEECHHHCcccCCch--HHHHHHHHHHHHh
Confidence             111 23345566654  345566777899999999999998875433  4778888877653

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.74  E-value=4.5e-17  Score=136.43  Aligned_cols=123  Identities=20%  Similarity=0.316  Sum_probs=85.6

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      +.+++++.+++|||+||. ..+.+.|.|.+|||++++||++.+||+||++||||+++....+++...+..........+|
T Consensus         6 ~~~~ii~~~~~vLL~~R~-~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
T PRK10546          6 VVAAIIERDGKILLAQRP-AHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW   84 (135)
T ss_pred             EEEEEEecCCEEEEEEcc-CCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence            444455667899999986 3445789999999999999999999999999999999876666654433322222222334


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  301 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~  301 (340)
                      .+..  ..+.+  ...|..+++|++++++..++++...   +.+++.+++.
T Consensus        85 ~~~~--~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~  128 (135)
T PRK10546         85 HVPD--FHGEL--QAHEHQALVWCTPEEALRYPLAPAD---IPLLEAFMAL  128 (135)
T ss_pred             EEEE--ecCcc--cccccceeEEcCHHHcccCCCCcCc---HHHHHHHHHh
Confidence            3432  12222  2346778999999999999887653   5666665544

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.74  E-value=1.7e-17  Score=139.22  Aligned_cols=105  Identities=27%  Similarity=0.363  Sum_probs=80.7

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      |.+++.+++++|||++|.. .  ..|.|.+|||++++||++.+||+||++||||+++..+..++..... . .....++|
T Consensus         3 v~i~l~~~~~~vLL~~r~~-~--~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~-~-~~~~~~~f   77 (131)
T cd03429           3 VIVLVIDGGDRILLARQPR-F--PPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWP-F-PSSLMLGF   77 (131)
T ss_pred             EEEEEEeCCCEEEEEEecC-C--CCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCC-C-CceEEEEE
Confidence            5666777778999999863 2  3789999999999999999999999999999999877777643221 1 13344566


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ++...  .+....+++|+.+++|++++++.++
T Consensus        78 ~~~~~--~~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          78 TAEAD--SGEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEEc--CCcccCCchhhhccEeecHHHHhhc
Confidence            66653  3455566789999999999998874

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3.8e-17  Score=135.54  Aligned_cols=110  Identities=18%  Similarity=0.311  Sum_probs=81.0

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc----CCCce
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN----VAFQK  245 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~----~~~~~  245 (340)
                      .|.++++++ ++|||+++.     ..+.|.+|||++++||++.+||+||++||||+++.....++......    .....
T Consensus         3 ~v~~vi~~~-~~vLl~~~~-----~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T cd04688           3 RAAAIIIHN-GKLLVQKNP-----DETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHE   76 (126)
T ss_pred             EEEEEEEEC-CEEEEEEeC-----CCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEE
Confidence            356666654 599999876     26789999999999999999999999999999998877776543211    11233


Q ss_pred             EEEEEEEEEecCCCccc-------CCcCceeeEEEEeccccccCCCCCC
Q 019517          246 SDLFFICMLKPLSTEIK-------VDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~-------~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      ..++|.|...  .+...       .++.|+.+++|++++++..+++.+.
T Consensus        77 ~~~~f~~~~~--~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p~  123 (126)
T cd04688          77 IEFYYLVTLL--DESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPE  123 (126)
T ss_pred             EEEEEEEEeC--CCcccccccceeccCCCEEEEEEeeHHHcccCccCCc
Confidence            4566666653  22222       2457899999999999998877653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=8.4e-18  Score=139.76  Aligned_cols=111  Identities=21%  Similarity=0.275  Sum_probs=79.2

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeeccCCCceE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE--VIAFRHAHNVAFQKS  246 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~--~l~~~~~~~~~~~~~  246 (340)
                      .|.+++++++++|||++|...+...+|.|++| ||++++||++ +||+||++||||+++....  .+..+.....  +..
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~--~~~   78 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE--GFD   78 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC--CeE
Confidence            36788899889999999875555578999998 8999999999 9999999999999976432  3332222111  222


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      ..++ +..........++.+|+.+++|++++++.++..
T Consensus        79 ~~~~-~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  115 (127)
T cd04693          79 DYYL-FYADVEIGKLILQKEEVDEVKFVSKDEIDGLIG  115 (127)
T ss_pred             EEEE-EEecCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence            2222 222222344556678999999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=1.5e-17  Score=141.55  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=82.9

Q ss_pred             EEEEEEEeCC---ceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccC--
Q 019517          170 GVGGFVINDN---NEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNV--  241 (340)
Q Consensus       170 ~V~~lv~~~~---~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~--~~~~l~~~~~~~~--  241 (340)
                      +|.++|+|.+   +++|+++|.......+|.|++ |||++++||++.+||+||++||||+.+.  .+..++.......  
T Consensus         4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~   83 (144)
T cd04692           4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI   83 (144)
T ss_pred             EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence            3788999976   899999997555567899999 5999999999999999999999999864  3444444332221  


Q ss_pred             -C--CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517          242 -A--FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       242 -~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~  283 (340)
                       .  ......+|++......+.+.++++|+.+++|++++++.++.
T Consensus        84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  128 (144)
T cd04692          84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL  128 (144)
T ss_pred             CCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence             1  11234556665532223445667899999999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=3e-17  Score=136.68  Aligned_cols=112  Identities=25%  Similarity=0.284  Sum_probs=82.8

Q ss_pred             EEEEEEEeC--CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----ccCC-
Q 019517          170 GVGGFVIND--NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA----HNVA-  242 (340)
Q Consensus       170 ~V~~lv~~~--~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~----~~~~-  242 (340)
                      .|.+++++.  +++|||++|...   .+|.|.+|||++++||++.+||+||++||||+.+.....+.....    .... 
T Consensus         3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T cd04664           3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN   79 (129)
T ss_pred             EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC
Confidence            477888887  899999999732   689999999999999999999999999999999876666554321    1111 


Q ss_pred             -CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          243 -FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       243 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                       .....++|++.+..  ......++|+.+++|++++++.++...+
T Consensus        80 ~~~~~~~~f~~~~~~--~~~~~~~~E~~~~~W~~~~e~~~~~~~~  122 (129)
T cd04664          80 GRVWTEHPFAFHLPS--DAVVTLDWEHDAFEWVPPEEAAALLLWE  122 (129)
T ss_pred             ceEEEEeEEEEEcCC--CCcccCCccccccEecCHHHHHHHHcCh
Confidence             12334556666532  2222345788999999999999876544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=7.1e-17  Score=134.94  Aligned_cols=111  Identities=22%  Similarity=0.303  Sum_probs=83.3

Q ss_pred             CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCC
Q 019517          164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF  243 (340)
Q Consensus       164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~  243 (340)
                      +.++.++|+++++++ ++|||++|...  ...|.|.+|||++++||++.+||+||++||||+++....+++.+...  ..
T Consensus         9 ~~~~~~~v~~ii~~~-~~vLL~kr~~~--~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~--~~   83 (130)
T cd04511           9 YQNPKIIVGCVPEWE-GKVLLCRRAIE--PRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP--HI   83 (130)
T ss_pred             CCCCcEEEEEEEecC-CEEEEEEecCC--CCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC--Cc
Confidence            344557778777765 79999998643  36789999999999999999999999999999998766666655432  22


Q ss_pred             ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517          244 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       244 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ....++|++...  ...+. .+.|..+++|+++++++..
T Consensus        84 ~~~~~~f~~~~~--~~~~~-~~~e~~~~~~~~~~~l~~~  119 (130)
T cd04511          84 SQVYMFYRARLL--DLDFA-PGPESLEVRLFTEEEIPWD  119 (130)
T ss_pred             eEEEEEEEEEEc--CCccc-CCcchhceEEECHHHCCch
Confidence            345567777663  33333 3467889999999999743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=4.8e-17  Score=133.02  Aligned_cols=107  Identities=21%  Similarity=0.364  Sum_probs=78.6

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccC-CC--ce
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNV-AF--QK  245 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~--~~~l~~~~~~~~-~~--~~  245 (340)
                      +++++++.++++||++++     ..+.|.+|||++++||++.+||+||++||||+.+..  +..++.+..... ..  ..
T Consensus         3 ~~~~v~~~~~~vLl~~r~-----~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   77 (118)
T cd04690           3 AAALILVRDGRVLLVRKR-----GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV   77 (118)
T ss_pred             EEEEEEecCCeEEEEEEC-----CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEE
Confidence            566677778899999986     357899999999999999999999999999999877  777665443221 11  22


Q ss_pred             EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      ...+|++...  . .+. ...|+.+++|++++++...++.+
T Consensus        78 ~~~~f~~~~~--~-~~~-~~~e~~~~~W~~~~e~~~~~~~~  114 (118)
T cd04690          78 RATVYVAELT--G-EPV-PAAEIEEIRWVDYDDPADDRLAP  114 (118)
T ss_pred             EEEEEEEccc--C-CcC-CCchhhccEEecHHHccccccCc
Confidence            3344555432  2 332 34688999999999997766544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.73  E-value=1.5e-16  Score=131.46  Aligned_cols=120  Identities=18%  Similarity=0.287  Sum_probs=83.5

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      +.+++.+++|+|||+||.. .+..+|.|+||||++++||++.+||+||++||||+++.....++...+..........+|
T Consensus         7 ~~~ii~~~~~~vll~rR~~-~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
T PRK10776          7 AVGIIRNPNNEIFITRRAA-DAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFW   85 (129)
T ss_pred             EEEEEECCCCEEEEEEecC-CCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEE
Confidence            4456667778999999863 345789999999999999999999999999999998766555544333222222223344


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  298 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~  298 (340)
                      .+...  ...  +...|..+++|++++++...+++..   .+++++.+
T Consensus        86 ~~~~~--~~~--~~~~e~~~~~W~~~~~l~~~~~p~~---~~~~~~~~  126 (129)
T PRK10776         86 LVESW--EGE--PWGKEGQPGRWVSQVALNADEFPPA---NEPIIAKL  126 (129)
T ss_pred             EEEEE--CCc--cCCccCCccEEecHHHCccCCCCcc---cHHHHHHH
Confidence            44332  122  2235677889999999999887664   35555543

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=6e-17  Score=134.15  Aligned_cols=107  Identities=18%  Similarity=0.200  Sum_probs=76.3

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC----Cc
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ  244 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~----~~  244 (340)
                      +.|.+++++ +++|||+++.     ..+.|.+|||++++||++.+||+||++||||+++....+++........    ..
T Consensus         2 ~~~~~vi~~-~~~vLlv~~~-----~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~   75 (125)
T cd04689           2 LRARAIVRA-GNKVLLARVI-----GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTH   75 (125)
T ss_pred             eEEEEEEEe-CCEEEEEEec-----CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEE
Confidence            456777774 6799999985     3568999999999999999999999999999999877777654332211    12


Q ss_pred             eEEEEEEEEEecCCCc-ccCCcCceeeEEEEecccccc
Q 019517          245 KSDLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEFVK  281 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~leel~~  281 (340)
                      ...++|.+........ ....++|+.+++|++++++..
T Consensus        76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  113 (125)
T cd04689          76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSL  113 (125)
T ss_pred             EEEEEEEEEcccccccCCccCccceEEEEEccHHHccc
Confidence            2334555554321111 223356789999999999754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.72  E-value=3.8e-17  Score=135.91  Aligned_cols=118  Identities=27%  Similarity=0.516  Sum_probs=83.9

Q ss_pred             EEEEEEEeCCc---eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE---ee-ccCC
Q 019517          170 GVGGFVINDNN---EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR---HA-HNVA  242 (340)
Q Consensus       170 ~V~~lv~~~~~---~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~---~~-~~~~  242 (340)
                      ++++++++.++   +|||++++     . +.|.+|||++++||++.+||+||++||||+++....+++.+   .. ....
T Consensus         4 ~~g~vi~~~~~~~~~vLl~~~~-----~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   77 (130)
T cd03428           4 SAGAIIYRRLNNEIEYLLLQAS-----Y-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG   77 (130)
T ss_pred             EEEEEEEEecCCCceEEEEEcc-----C-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC
Confidence            46777777443   79999986     2 78999999999999999999999999999999877664211   11 1111


Q ss_pred             CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517          243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  298 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~  298 (340)
                      ......+|++.... ...+..+ +|+.++.|++++++.++.....   ++.+++.+
T Consensus        78 ~~~~~~~f~~~~~~-~~~~~~~-~E~~~~~W~~~~e~~~~~~~~~---~~~~~~~~  128 (130)
T cd03428          78 KLKTVTYFLAELRP-DVEVKLS-EEHQDYRWLPYEEALKLLTYED---LKAVLDKA  128 (130)
T ss_pred             cceEEEEEEEEeCC-CCccccc-cceeeEEeecHHHHHHHcCchh---HHHHHHHh
Confidence            23445667776642 2334444 7899999999999998765432   45666554

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=6.5e-17  Score=137.93  Aligned_cols=115  Identities=17%  Similarity=0.339  Sum_probs=82.5

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee----EEEEEEeecc----
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV----EVIAFRHAHN----  240 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~----~~l~~~~~~~----  240 (340)
                      ++|+++++|.+++|||++|......++|.|.+|||++++||++.+||+||++||||+.+...    .+++......    
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~   81 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL   81 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence            46888889999999999997554467899999999999999999999999999999998653    4554332111    


Q ss_pred             --CC--CceEEEEEEEEEecC----CCcccCCcCceeeEEEEeccccccCC
Q 019517          241 --VA--FQKSDLFFICMLKPL----STEIKVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       241 --~~--~~~~~~~f~~~~~~~----~~~~~~~~~E~~~~~Wv~leel~~~~  283 (340)
                        ..  ......|+++.....    ...+.++++|+.+++|++++++.++.
T Consensus        82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~  132 (143)
T cd04694          82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVV  132 (143)
T ss_pred             CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHH
Confidence              11  223333443332211    11344566899999999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00586 mutt mutator mutT protein

Probab=99.71  E-value=3.9e-16  Score=129.19  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=82.0

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF  249 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~  249 (340)
                      .++++++++++++||++|. ..+...|.|++|||.+++||++.+|++||+.||||+++.....++...+..........+
T Consensus         6 ~~~~ii~~~~~~vLl~~R~-~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~   84 (128)
T TIGR00586         6 IAVGIIRNENGEIIITRRA-DGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFW   84 (128)
T ss_pred             EEEEEEECCCCEEEEEEEe-CCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEE
Confidence            3555666777899999996 455678999999999999999999999999999999987666665444433333333334


Q ss_pred             EEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          250 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       250 f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      |.+...  .+..  ...+..+++|++++++.+++++..
T Consensus        85 ~~~~~~--~~~~--~~~~~~~~~W~~~~~l~~~~~p~~  118 (128)
T TIGR00586        85 LLERWE--GGPP--GKEGQPEEWWVLVGLLADDFFPAA  118 (128)
T ss_pred             EEEEEc--CCCc--CcccccccEEeCHHHCCccCCCCC
Confidence            444432  2221  234566889999999999888765

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=7.8e-17  Score=134.88  Aligned_cols=106  Identities=22%  Similarity=0.348  Sum_probs=73.5

Q ss_pred             eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEE---EEEEeeccCCCceEEEEEEEE
Q 019517          177 NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV---IAFRHAHNVAFQKSDLFFICM  253 (340)
Q Consensus       177 ~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~---l~~~~~~~~~~~~~~~~f~~~  253 (340)
                      +++++|||++|...   .+|.|.+|||++++||++.+||+||++||||+++.....   +...............+|++.
T Consensus        11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   87 (131)
T cd04695          11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF   87 (131)
T ss_pred             CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence            46789999999732   578999999999999999999999999999999865422   111122111111223345554


Q ss_pred             EecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          254 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       254 ~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      ... ...+. .++|+.+++|++++++.++...+.
T Consensus        88 ~~~-~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~  119 (131)
T cd04695          88 VPP-HQEVV-LNHEHTEYRWCSFAEALELAPFPG  119 (131)
T ss_pred             ecC-CCccc-cCchhcccEecCHHHHHHhcCChh
Confidence            422 22232 347899999999999998876654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1e-16  Score=134.36  Aligned_cols=107  Identities=21%  Similarity=0.455  Sum_probs=75.1

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc-eeeEEEEEEee---ccC----
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT-EFVEVIAFRHA---HNV----  241 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~-~~~~~l~~~~~---~~~----  241 (340)
                      +|+++|+++ ++|||+++.     ..+.|.+|||++++||++.+||+||++||||+.+ .....++....   ...    
T Consensus         2 ~~~~ii~~~-~~vLLv~~~-----~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~   75 (131)
T cd04686           2 AVRAIILQG-DKILLLYTK-----RYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD   75 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEc-----CCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence            467777764 799999986     2357999999999999999999999999999987 44555554321   111    


Q ss_pred             CCceEEEEEEEEEecCCCcccCCcCce---eeEEEEeccccccC
Q 019517          242 AFQKSDLFFICMLKPLSTEIKVDDLEI---KGAKWMPFMEFVKQ  282 (340)
Q Consensus       242 ~~~~~~~~f~~~~~~~~~~~~~~~~E~---~~~~Wv~leel~~~  282 (340)
                      .+....++|+|...........++.|.   ..++|+|++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence            122345678887654333344443333   36899999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.69  E-value=1.2e-16  Score=139.33  Aligned_cols=115  Identities=16%  Similarity=0.289  Sum_probs=84.2

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeEEE-EEE-eecc--CCC
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEVI-AFR-HAHN--VAF  243 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~~l-~~~-~~~~--~~~  243 (340)
                      .+|++++++++++|||++|.......+|.|.+| ||++++||++.+||+||++||||+.+....++ ... ....  ...
T Consensus        31 ~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  110 (165)
T cd02885          31 RAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGGL  110 (165)
T ss_pred             eEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCCc
Confidence            457888999999999999976555678999997 89999999999999999999999998766554 221 1111  111


Q ss_pred             --ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          244 --QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       244 --~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                        .....+|.+..   .....++.+|+.+++|++++++.++....
T Consensus       111 ~~~~i~~~f~~~~---~~~~~~~~~Ev~~~~w~~~~el~~~~~~~  152 (165)
T cd02885         111 VEHEIDHVFFARA---DVTLIPNPDEVSEYRWVSLEDLKELVAAA  152 (165)
T ss_pred             eeeEEEEEEEEEe---CCCCCCCccceeEEEEECHHHHHHHHHhC
Confidence              11234444443   23344567899999999999998865443

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.6e-16  Score=129.19  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=76.4

Q ss_pred             EEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEE
Q 019517          172 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFI  251 (340)
Q Consensus       172 ~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~  251 (340)
                      ++++. .+++|||++|.      .|.|.+|||++++||++.+||.||++||||+.+.....+..+..    ......+|+
T Consensus         4 ~~i~~-~~~~vLlv~r~------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~   72 (112)
T cd04667           4 TVICR-RGGRVLLVRKS------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFV   72 (112)
T ss_pred             EEEEe-cCCEEEEEEcC------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEE
Confidence            44444 56899999985      27899999999999999999999999999999877666654322    122345566


Q ss_pred             EEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          252 CMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       252 ~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      +.+.  .......++|+.+++|++++++.++..+..
T Consensus        73 ~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  106 (112)
T cd04667          73 ASVP--PSAQPKPSNEIADCRWLSLDALGDLNASAA  106 (112)
T ss_pred             EEcC--CcCCCCCchheeEEEEecHHHhhhcccchh
Confidence            6542  222333467899999999999998877653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.69  E-value=4.3e-16  Score=127.18  Aligned_cols=113  Identities=27%  Similarity=0.418  Sum_probs=83.1

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      +.++++++++++||++|..+ +..+|.|.+|||+++++|++.+||.||+.||||+++.....++...+..........+|
T Consensus         4 ~~~~i~~~~~~~Ll~~r~~~-~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (124)
T cd03425           4 VAAIIIDDDGRILIAQRPAG-KHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF   82 (124)
T ss_pred             EEEEEECCCCEEEEEEeCCC-CCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence            44556677799999998743 36799999999999999999999999999999999877666655443333333333444


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCC
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD  288 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~  288 (340)
                      .+...  ....  ...|..++.|++++++..++++..+
T Consensus        83 ~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~~  116 (124)
T cd03425          83 LVELW--SGEP--QLLEHQELRWVPPEELDDLDFPPAD  116 (124)
T ss_pred             EEeee--CCCc--ccccCceEEEeeHHHcccCCCCccc
Confidence            44432  2222  2457789999999999999887763

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.69  E-value=4.5e-16  Score=140.12  Aligned_cols=118  Identities=14%  Similarity=0.063  Sum_probs=91.9

Q ss_pred             eEEEEEEEeC-CceEEEEEeccCCCCC-----CCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517          169 VGVGGFVIND-NNEVLVVQEKYCNPAF-----AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA  242 (340)
Q Consensus       169 v~V~~lv~~~-~~~VLLvqr~~~~~~~-----~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~  242 (340)
                      -+|+++++++ +++|||+++. +++..     +..|++|+|.+|+||++.+||+||+.||||+.+..+..+..+.+.++.
T Consensus        50 ~~V~il~~~~~~~~vlLvrQy-R~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~  128 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQI-RIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGG  128 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEee-ecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCc
Confidence            3577888876 4799999994 66653     368999999999999999999999999999999988888777777777


Q ss_pred             CceEEEEEEEEEecC---CCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          243 FQKSDLFFICMLKPL---STEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~---~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      .....++|++.....   ......+++|..++.|+|++++.++.....
T Consensus       129 ~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~  176 (202)
T PRK10729        129 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK  176 (202)
T ss_pred             CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCC
Confidence            777777777764211   112334667888999999999988765443

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=2.5e-16  Score=130.68  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=77.8

Q ss_pred             EEEEEEeCC---ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeeccCC----
Q 019517          171 VGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV-EVIAFRHAHNVA----  242 (340)
Q Consensus       171 V~~lv~~~~---~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~-~~l~~~~~~~~~----  242 (340)
                      +++++++.+   ++|||+++.     ..+.|.+|||++++||++.+||+||++||||+.+... .+++.+......    
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~-----~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~   77 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSR-----RTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRP   77 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEec-----CCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCC
Confidence            566666643   689999986     2378999999999999999999999999999998777 777665443222    


Q ss_pred             CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517          243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      .....++|.+.....  ....++.|+.+++|++++++.++...
T Consensus        78 ~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~ea~~~~~~  118 (122)
T cd04666          78 PRCEVAVFPLEVTEE--LDEWPEMHQRKRKWFSPEEAALLVEE  118 (122)
T ss_pred             ceEEEEEEEEEEecc--ccCCcccCceEEEEecHHHHHHhcCC
Confidence            133445565555322  22223456789999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.69  E-value=2.1e-16  Score=140.28  Aligned_cols=115  Identities=13%  Similarity=0.286  Sum_probs=83.4

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEee-ccCCC--
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEV-IAFRHA-HNVAF--  243 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~~-l~~~~~-~~~~~--  243 (340)
                      .+|++++++++++|||++|.......+|.|.+| ||++++||++.+||+||++||||+++..... ++.+.. .....  
T Consensus        35 ~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  114 (184)
T PRK03759         35 LAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGI  114 (184)
T ss_pred             eEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCc
Confidence            457888999999999999865555568899987 8999999999999999999999999864432 222211 11111  


Q ss_pred             --ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          244 --QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       244 --~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                        .....+|++...   +.+.++++|+.+++|++++++.++....
T Consensus       115 ~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~~~  156 (184)
T PRK03759        115 VENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVDAT  156 (184)
T ss_pred             eeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHHhC
Confidence              123345555542   3556677899999999999998865544

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.67  E-value=3.3e-16  Score=139.17  Aligned_cols=117  Identities=15%  Similarity=0.057  Sum_probs=88.8

Q ss_pred             eEEEEEEEeC-CceEEEEEeccCCCC-----CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517          169 VGVGGFVIND-NNEVLVVQEKYCNPA-----FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA  242 (340)
Q Consensus       169 v~V~~lv~~~-~~~VLLvqr~~~~~~-----~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~  242 (340)
                      .+|++++++. +++|||+++. +++.     .++.|++|||++|+||++++||+||++||||+.+..+..++.....++.
T Consensus        45 ~~v~vl~~~~~~~~vlLvrq~-R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~  123 (185)
T TIGR00052        45 NAAAVLLYDPKKDTVVLIEQF-RIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGG  123 (185)
T ss_pred             CeEEEEEEECCCCEEEEEECc-eeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCC
Confidence            4577888875 4799999985 5544     5778999999999999999999999999999999988887766666666


Q ss_pred             CceEEEEEEEEEecCC--CcccCCcCceeeEEEEeccccccCCCCC
Q 019517          243 FQKSDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      .....++|++......  .....+++|..++.|++++++.++....
T Consensus       124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G  169 (185)
T TIGR00052       124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG  169 (185)
T ss_pred             CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence            5666677777653211  1112244566789999999998875544

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.67  E-value=3.2e-16  Score=135.75  Aligned_cols=114  Identities=16%  Similarity=0.269  Sum_probs=81.8

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeec-cCCCc
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE--VIAFRHAH-NVAFQ  244 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~--~l~~~~~~-~~~~~  244 (340)
                      .+|+++|+|.+++|||+||...+...+|.|++| ||+++.||  .+||+||++||||+++....  .+...... ....+
T Consensus        28 ~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g  105 (158)
T TIGR02150        28 RAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG  105 (158)
T ss_pred             EEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCC
Confidence            447788999999999999976666789999997 79999999  49999999999999986553  23211111 11112


Q ss_pred             --eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          245 --KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       245 --~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                        ....+|.+..  . ..+.++++|+.+++|++++|+.++...++
T Consensus       106 ~~~~~~~f~~~~--~-~~~~~~~~Ev~~~~W~~~~el~~~~~~~~  147 (158)
T TIGR02150       106 EHELCPVFFARA--P-VPLNPNPEEVAEYRWVSLEELKEILKAPW  147 (158)
T ss_pred             cEEEEEEEEEec--C-CcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence              2334444443  2 24556667999999999999988765443

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.66  E-value=1.4e-15  Score=135.67  Aligned_cols=116  Identities=16%  Similarity=0.067  Sum_probs=91.8

Q ss_pred             eEEEEEEEeC-CceEEEEEeccCCCC------CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517          169 VGVGGFVIND-NNEVLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV  241 (340)
Q Consensus       169 v~V~~lv~~~-~~~VLLvqr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~  241 (340)
                      -+|++++++. +++|+|+++. |++.      .+..|++|+|.+|+| ++++||+||+.||||+.+..+..++.+.+.++
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQy-R~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG  123 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQF-RVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPG  123 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcc-cccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCc
Confidence            3577777875 6799999994 7776      677899999999976 69999999999999999999988887777777


Q ss_pred             CCceEEEEEEEEEecC--CCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          242 AFQKSDLFFICMLKPL--STEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       242 ~~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      ......++|++.....  ......+++|..++.|+|++|+.++....
T Consensus       124 ~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G  170 (191)
T PRK15009        124 GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG  170 (191)
T ss_pred             ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence            7777777787775321  12223456788899999999998876544

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=7.3e-16  Score=129.86  Aligned_cols=113  Identities=18%  Similarity=0.244  Sum_probs=79.1

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc-eeeEEEEE----EeeccCCCc
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT-EFVEVIAF----RHAHNVAFQ  244 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~-~~~~~l~~----~~~~~~~~~  244 (340)
                      ++.+++++.+++|||+++........+.|.+|||++++||++.+||.||++||||+.+ .....+..    +........
T Consensus         2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~   81 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR   81 (133)
T ss_pred             eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence            4788999999999999986432246789999999999999999999999999999988 44444322    112222223


Q ss_pred             eEEEEEEEEEecCCCc-cc--CC-cCceeeEEEEeccccccC
Q 019517          245 KSDLFFICMLKPLSTE-IK--VD-DLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~-~~--~~-~~E~~~~~Wv~leel~~~  282 (340)
                      ...++|++........ ..  .. ..++.+++|++++++.+.
T Consensus        82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            4556777776421111 11  11 234568999999999886

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=3.2e-15  Score=121.00  Aligned_cols=112  Identities=26%  Similarity=0.476  Sum_probs=80.9

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--CCceEE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSD  247 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~--~~~~~~  247 (340)
                      ++++++++.++++||++|...   ..|.|.+|||+++.||++.++|+||+.||+|+.+.....+........  ......
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   78 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVV   78 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEE
Confidence            467888888789999998732   579999999999999999999999999999998865444443332222  223344


Q ss_pred             EEEEEEEecCCCcc-cCCcCceeeEEEEeccccccCCCCC
Q 019517          248 LFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       248 ~~f~~~~~~~~~~~-~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      .+|.+....  ... ..++.|..+.+|++++++.++....
T Consensus        79 ~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~~l~~~~~~~  116 (123)
T cd02883          79 FVFLARLVG--GEPTLLPPDEISEVRWVTLDELPALALSP  116 (123)
T ss_pred             EEEEEEeCC--CCcCCCCCCccceEEEEcHHHCccccccc
Confidence            455555432  222 2455778899999999998865543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.65  E-value=1.4e-15  Score=147.34  Aligned_cols=128  Identities=22%  Similarity=0.347  Sum_probs=84.9

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE------E-eec
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF------R-HAH  239 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~------~-~~~  239 (340)
                      ..++|+++++. +|+|||++|...  ++.|.|.+|||++++||++.+||+||++||||+++....+.+.      + .+.
T Consensus       202 ~~vtv~avv~~-~g~VLLvrR~~~--p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~  278 (340)
T PRK05379        202 TFVTVDAVVVQ-SGHVLLVRRRAE--PGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPG  278 (340)
T ss_pred             cceEEEEEEEE-CCEEEEEEecCC--CCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCC
Confidence            34777777775 579999998643  3689999999999999999999999999999998754433221      1 111


Q ss_pred             cCCC-ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC-CCCCCchHHHHHHHHH
Q 019517          240 NVAF-QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP-LIQGDCMFKKVIDICI  299 (340)
Q Consensus       240 ~~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~-~~~~~~~~~~il~~~l  299 (340)
                      .... ....++|++............++|..+++|++++++..++ ....++  ..++..++
T Consensus       279 r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh--~~ii~~~~  338 (340)
T PRK05379        279 RSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDH--FQIITHFL  338 (340)
T ss_pred             CCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHH--HHHHHHHh
Confidence            1111 2345566666532211111234688999999999998752 122333  55665544

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.64  E-value=2e-15  Score=134.68  Aligned_cols=114  Identities=19%  Similarity=0.218  Sum_probs=84.6

Q ss_pred             eEEEEEEEe--CCceEEEEEeccCCCCCCCceEcceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce
Q 019517          169 VGVGGFVIN--DNNEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK  245 (340)
Q Consensus       169 v~V~~lv~~--~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~  245 (340)
                      .+++++++.  +++.||++||........|.|+||||.+|+| |++.+||+||++||||+.+..+..++.........+.
T Consensus        31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  110 (190)
T PRK10707         31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY  110 (190)
T ss_pred             CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence            445555553  4568999998755555789999999999985 6799999999999999999998888776544344444


Q ss_pred             EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517          246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~  283 (340)
                      ....+++.+.. .....++++|..++.|+|++++.++.
T Consensus       111 ~~~~~v~~~~~-~~~~~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707        111 QVTPVVGIIPP-DLPYRANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             EEEEEEEEECC-CCCCCCChhhhheEEEEeHHHHhCcc
Confidence            44445454432 23445677899999999999998875

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.62  E-value=1.1e-15  Score=141.44  Aligned_cols=140  Identities=25%  Similarity=0.334  Sum_probs=105.9

Q ss_pred             cccccccCcccccccccccCCC-CCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHH
Q 019517          137 GFKYHHAEPEYLMLTYWIPDGP-CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGA  215 (340)
Q Consensus       137 ~f~~h~~~~~y~~l~~w~~~~~-~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAA  215 (340)
                      .|.-+.-.+.+.....|...++ |....++..-+.|.++|.+.+ ++||.++.+ +  .+|.+.+-+|+||+|||+++|+
T Consensus       112 RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~-~ilLa~~~~-h--~~g~yS~LAGFVE~GETlE~AV  187 (279)
T COG2816         112 RFCGRCGTKTYPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGD-EILLARHPR-H--FPGMYSLLAGFVEPGETLEQAV  187 (279)
T ss_pred             cCCCCCCCcCccccCceeeeCCCCCCccCCCCCCeEEEEEecCC-ceeecCCCC-C--CCcceeeeeecccCCccHHHHH
Confidence            3433334667777777877654 556667777787777777665 488888763 2  4899999999999999999999


Q ss_pred             HHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccc-cccCCC
Q 019517          216 VREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME-FVKQPL  284 (340)
Q Consensus       216 iREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~lee-l~~~~~  284 (340)
                      +||++||+||+++.+.+++   +.+.++..+. +..|.....+++++++..|+.+++|++.+| ++.++-
T Consensus       188 ~REv~EE~Gi~V~~vrY~~---SQPWPfP~SL-Migf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~  253 (279)
T COG2816         188 AREVFEEVGIKVKNVRYVG---SQPWPFPHSL-MLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALPP  253 (279)
T ss_pred             HHHHHHhhCeEEeeeeEEe---ccCCCCchhh-hhhheeeeccccccCCcchhhhccccCHhHHhhhcCC
Confidence            9999999999999888776   5666666433 233333345788999999999999999999 555553

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=5.4e-15  Score=130.62  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=78.4

Q ss_pred             EEEEeCC--ceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcceeeE---EEEE---Eee-ccCC
Q 019517          173 GFVINDN--NEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVE---VIAF---RHA-HNVA  242 (340)
Q Consensus       173 ~lv~~~~--~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~---~l~~---~~~-~~~~  242 (340)
                      +++.|.+  ++||+.||...+..++|.|+ +|||++++||++.+||+||++||||+++....   .++.   ... ....
T Consensus        39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~  118 (180)
T cd03676          39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG  118 (180)
T ss_pred             EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence            4456665  89999999888888999995 99999999999999999999999999987533   2321   111 1111


Q ss_pred             -CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517          243 -FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       243 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~  283 (340)
                       .....++|.+... ....+.++++|+.++.|++++|+.++.
T Consensus       119 ~~~e~~~~f~~~~~-~~~~~~~~~~Ev~~~~~~~~~el~~~l  159 (180)
T cd03676         119 LQPEVEYVYDLELP-PDFIPAPQDGEVESFRLLTIDEVLRAL  159 (180)
T ss_pred             EeeeEEEEEEEEcC-CCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence             1122333444432 222345677899999999999998654

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.59  E-value=4.4e-15  Score=124.75  Aligned_cols=98  Identities=26%  Similarity=0.341  Sum_probs=69.1

Q ss_pred             CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEE-----EEeec-c------CCCce
Q 019517          178 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA-----FRHAH-N------VAFQK  245 (340)
Q Consensus       178 ~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~-----~~~~~-~------~~~~~  245 (340)
                      +++++||+++.++   ..|.|.||||++++||++.+||+||++||||+.+.. .+++     .+... +      ...+.
T Consensus        11 ~~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~   86 (132)
T cd04661          11 DDTLVLLVQQKVG---SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGA   86 (132)
T ss_pred             cCcEEEEEEeecC---CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCccc
Confidence            4578999998632   368999999999999999999999999999998764 2222     11110 0      11123


Q ss_pred             EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517          246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ...+|.|..  .++.+.+ .+|+.+++|++++|+.++
T Consensus        87 ~~~~f~~~~--~~g~~~~-~~e~~~~~W~~~~el~~~  120 (132)
T cd04661          87 KVFFFKARY--MSGQFEL-SQNQVDFKWLAKEELQKY  120 (132)
T ss_pred             EEEEEEEEE--ecCcccc-CCCcceeEecCHHHHHhh
Confidence            345555554  3444443 378899999999999875

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.58  E-value=4.4e-14  Score=121.82  Aligned_cols=124  Identities=19%  Similarity=0.153  Sum_probs=89.5

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      ..|.+++.++ +++||+++.      ...|++|||++|+||++.+||+||++||||+.+..+.+++.+............
T Consensus        25 ~~V~ii~~~~-~~~LL~~~~------~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~   97 (156)
T TIGR02705        25 NHVLVIPRYK-DQWLLTEHK------RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKD   97 (156)
T ss_pred             CEEEEEEEEC-CEEEEEEEc------CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEE
Confidence            4566666654 489999875      235999999999999999999999999999999999999887776655455566


Q ss_pred             EEEEEEecCCCcccCCcCceeeEE-EEeccccccCCCCCCC---chHHHHHHHHHHHHhc
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAK-WMPFMEFVKQPLIQGD---CMFKKVIDICIARLRK  304 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~-Wv~leel~~~~~~~~~---~~~~~il~~~l~~l~~  304 (340)
                      +|++.....  .  .. +|..+.. ++++++++++....+.   -+-...+..++++++.
T Consensus        98 vf~A~~~~~--~--~~-~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~~  152 (156)
T TIGR02705        98 VYFAEVSAL--E--SK-DDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERAKH  152 (156)
T ss_pred             EEEEEEecc--c--cC-CCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHHHH
Confidence            677766422  2  12 4545555 7999999876654431   1335567777777643

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=7.1e-14  Score=115.38  Aligned_cols=100  Identities=23%  Similarity=0.291  Sum_probs=75.4

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      |.+++++ ++++||+++.      .+.|++|||++++||++.+||+||++||||+.+....+++.+............+|
T Consensus         3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y   75 (118)
T cd04665           3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVY   75 (118)
T ss_pred             EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEE
Confidence            4556665 4799999875      35799999999999999999999999999999988888887665544334455566


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEecccc
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEF  279 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel  279 (340)
                      ++....  ........|+..+.|++.+..
T Consensus        76 ~a~~~~--~~~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          76 PAVSAQ--LEEKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEEEe--cccccccccccCcEEeccCCc
Confidence            665532  222234589999999997655

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK08999 hypothetical protein; Provisional

Probab=99.54  E-value=8.7e-14  Score=133.04  Aligned_cols=112  Identities=16%  Similarity=0.234  Sum_probs=81.1

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      +.+++++.+++|||++|. ..+.++|.|++|||++++||++.+||.||++||||+.+.....+....+..........+|
T Consensus         8 ~~~vi~~~~~~vLL~kR~-~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y   86 (312)
T PRK08999          8 AAGVIRDADGRILLARRP-EGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR   86 (312)
T ss_pred             EEEEEECCCCeEEEEEec-CCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence            445566777899999986 3456789999999999999999999999999999999876655544433333323233344


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      .+...  .+.  +...|..+++|++++++.+++++..
T Consensus        87 ~~~~~--~~~--~~~~e~~~~~Wv~~~el~~~~~~~~  119 (312)
T PRK08999         87 RVTAW--QGE--PHGREGQPLAWVAPDELAVYPFPPA  119 (312)
T ss_pred             EEEEe--cCc--ccCccCCccEEecHHHcccCCCCcc
Confidence            44331  222  2345677899999999999888765

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=1.8e-13  Score=113.74  Aligned_cols=105  Identities=23%  Similarity=0.233  Sum_probs=65.7

Q ss_pred             EEEEEEEe---CCceEEEEEeccC--CCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc
Q 019517          170 GVGGFVIN---DNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ  244 (340)
Q Consensus       170 ~V~~lv~~---~~~~VLLvqr~~~--~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~  244 (340)
                      ++++++++   +..+|||++|...  .....+.|++|||+++.||++.+||+||++||||+++. ...+..... ....+
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~-~~~~~   79 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSL-KQSGG   79 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEE-ECCCC
Confidence            35666765   2347999987421  01357889999999999999999999999999999875 222221111 11112


Q ss_pred             eEEEEEEEE--------------EecCCCcccCC-cCceeeEEEEec
Q 019517          245 KSDLFFICM--------------LKPLSTEIKVD-DLEIKGAKWMPF  276 (340)
Q Consensus       245 ~~~~~f~~~--------------~~~~~~~~~~~-~~E~~~~~Wv~l  276 (340)
                      ....+|++.              +...+++.... .+|..+++|+|+
T Consensus        80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence            223333332              22223333333 478899999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=4.8e-13  Score=110.38  Aligned_cols=56  Identities=32%  Similarity=0.406  Sum_probs=43.9

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF  229 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~  229 (340)
                      +++++...+ .+||++|...  ...|.|.||||++++||++.+||+||+.||||+++..
T Consensus         7 av~vl~~~~-~~lL~~r~~~--~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~   62 (118)
T cd04674           7 VVALLPVDD-GLLVIRRGIE--PGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP   62 (118)
T ss_pred             EEEEEEECC-CEEEEEeecC--CCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence            334444444 5777776532  3579999999999999999999999999999998763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.50  E-value=3.3e-13  Score=124.56  Aligned_cols=138  Identities=15%  Similarity=0.217  Sum_probs=89.9

Q ss_pred             CCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCC-----------------HHHHHHHHHHHHh
Q 019517          162 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEE-----------------IFKGAVREVKEET  223 (340)
Q Consensus       162 p~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs-----------------~~eAAiREv~EET  223 (340)
                      +.+-.|++ +.++|+|.+|++||+||...+..++|.|+.. +||+..||+                 ..+||+||++|||
T Consensus        51 ~~gl~Hra-~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EEl  129 (247)
T PLN02552         51 PRGLLHRA-FSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHEL  129 (247)
T ss_pred             CCCceEEE-EEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHh
Confidence            33445554 8899999999999999988888899999776 466655432                 6789999999999


Q ss_pred             CCccee-----eEEEEEEee-ccCC--------C-c-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC-CC
Q 019517          224 GVDTEF-----VEVIAFRHA-HNVA--------F-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL-IQ  286 (340)
Q Consensus       224 Gi~~~~-----~~~l~~~~~-~~~~--------~-~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~-~~  286 (340)
                      ||.+..     +.+++.+.. ....        . . ..+.+++ ........+.++++|+.+++|++++|+.++.. .+
T Consensus       130 GI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~-~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~  208 (247)
T PLN02552        130 GIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLF-IRPVRDVKVNPNPDEVADVKYVNREELKEMMRKES  208 (247)
T ss_pred             CCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEE-EEecCCCcccCCHHHhheEEEEeHHHHHHHHhhcC
Confidence            999643     333432211 1111        1 1 2222222 22222346778889999999999999988632 11


Q ss_pred             ---CCchHHHHHHHHHHH
Q 019517          287 ---GDCMFKKVIDICIAR  301 (340)
Q Consensus       287 ---~~~~~~~il~~~l~~  301 (340)
                         -...++.+++.++..
T Consensus       209 ~~~~tpw~~~~~~~~l~~  226 (247)
T PLN02552        209 GLKLSPWFRLIVDNFLMK  226 (247)
T ss_pred             CcccCHHHHHHHHHHHHH
Confidence               122566666665543

>PLN02709 nudix hydrolase

Probab=99.50  E-value=2.6e-13  Score=122.98  Aligned_cols=104  Identities=22%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             ceEEEEEeccCCCCCCCceEcceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEec-C
Q 019517          180 NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKP-L  257 (340)
Q Consensus       180 ~~VLLvqr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~-~  257 (340)
                      .+|||++|.......+|.|.||||++|+| +++.+||+||+.||+|+.....++++.........+....-|++.+.. .
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~  130 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK  130 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence            48999999865556899999999999996 578999999999999999988888887665555555555556665532 1


Q ss_pred             CCcccCCcCceeeEEEEeccccccCC
Q 019517          258 STEIKVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       258 ~~~~~~~~~E~~~~~Wv~leel~~~~  283 (340)
                      .....++++|+.++.|+|++++.+..
T Consensus       131 ~~~~~~np~EV~~vf~vPL~~ll~~~  156 (222)
T PLN02709        131 AFKPLPNPAEVEEIFDVPLEMFLKDK  156 (222)
T ss_pred             CccccCChhhhheeEEecHHHHhCCc
Confidence            23444677899999999999997644

>PLN03143 nudix hydrolase; Provisional

Probab=99.48  E-value=2.1e-13  Score=128.40  Aligned_cols=113  Identities=19%  Similarity=0.251  Sum_probs=77.4

Q ss_pred             EEEEEEE-eCCce--EEEEEeccCCCCCCCceEcceeeecC-CCCHHHHHHHHHHHHhCCccee--eEEEE---------
Q 019517          170 GVGGFVI-NDNNE--VLVVQEKYCNPAFAGLWKLPTGFIDE-SEEIFKGAVREVKEETGVDTEF--VEVIA---------  234 (340)
Q Consensus       170 ~V~~lv~-~~~~~--VLLvqr~~~~~~~~g~W~lPGG~ve~-GEs~~eAAiREv~EETGi~~~~--~~~l~---------  234 (340)
                      +|+++++ +.+++  |+|++|. +++.+...|++|||.+|+ +|++.+||+||++||||+.+..  +..+.         
T Consensus       130 aVaVL~~l~~~ge~~VlLVrQ~-R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~  208 (291)
T PLN03143        130 AVAVLILLESEGETYAVLTEQV-RVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGC  208 (291)
T ss_pred             eEEEEEEEeCCCCEEEEEEEeE-ecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCc
Confidence            4555554 44444  8999885 777778899999999997 5899999999999999998643  33332         


Q ss_pred             EEeeccCCCceEEEEEEEEEecCC-------C--cccCCcCceeeEEEEeccccccCC
Q 019517          235 FRHAHNVAFQKSDLFFICMLKPLS-------T--EIKVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       235 ~~~~~~~~~~~~~~~f~~~~~~~~-------~--~~~~~~~E~~~~~Wv~leel~~~~  283 (340)
                      .+.+.++.......+|++......       .  ....++.|..++.|++++++..+.
T Consensus       209 ~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~  266 (291)
T PLN03143        209 RMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMT  266 (291)
T ss_pred             eEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence            233444444445556665443211       1  112356788899999999998775

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.46  E-value=1.3e-14  Score=134.75  Aligned_cols=113  Identities=24%  Similarity=0.339  Sum_probs=80.1

Q ss_pred             CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-
Q 019517          164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-  242 (340)
Q Consensus       164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~-  242 (340)
                      |++..+.|..++++.+++.+|..|..++  .+|.|..++|++|+||+++|||+||++||||++++.+.+..   ..+.+ 
T Consensus       183 yPr~dPvVIm~li~~d~~~~LL~R~~r~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~a---sQPWP~  257 (345)
T KOG3084|consen  183 YPRTDPVVIMLLIDHDGKHALLGRQKRY--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVA---SQPWPL  257 (345)
T ss_pred             ccCCCCeEEEEEEcCCCCEeeeecccCC--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeee---cCCCCC
Confidence            4444455777888877655544444344  57899999999999999999999999999999998887554   44444 


Q ss_pred             CceEEEEEEEEEecCCCcccCCcC-ceeeEEEEecccccc
Q 019517          243 FQKSDLFFICMLKPLSTEIKVDDL-EIKGAKWMPFMEFVK  281 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~~~~~~~~~-E~~~~~Wv~leel~~  281 (340)
                      ++.+.+...+.+...++.+..+.+ |.++++|++.+|+.+
T Consensus       258 ~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~  297 (345)
T KOG3084|consen  258 MPQSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS  297 (345)
T ss_pred             CchHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence            333322222222233467777776 999999999988754

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=1.6e-12  Score=108.25  Aligned_cols=106  Identities=15%  Similarity=0.227  Sum_probs=61.7

Q ss_pred             EEEEEEeCCc--eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEeeccCCCceEE
Q 019517          171 VGGFVINDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV-IAFRHAHNVAFQKSD  247 (340)
Q Consensus       171 V~~lv~~~~~--~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~-l~~~~~~~~~~~~~~  247 (340)
                      |.+++.+.++  +||+.+..     . +.|++|||.+++||++.+||+||++||||+++..... ...............
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~-----~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHP-----L-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFW   76 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcC-----C-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEE
Confidence            4455555443  66666553     2 4599999999999999999999999999999732221 122111111122233


Q ss_pred             EEEEEEEe---cCC--CcccCCcCceeeEEEEeccccccC
Q 019517          248 LFFICMLK---PLS--TEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       248 ~~f~~~~~---~~~--~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      .++++...   +..  +....++.+...+.|++++++...
T Consensus        77 ~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~~  116 (126)
T cd04663          77 HLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLDE  116 (126)
T ss_pred             EEEEEEecCCCcccccCcccCCCCceEEEEEEcccccccc
Confidence            33334331   111  111222333445569999999654

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.42  E-value=3e-12  Score=113.43  Aligned_cols=120  Identities=11%  Similarity=0.104  Sum_probs=72.1

Q ss_pred             EEEEEEeC---CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeE----------------
Q 019517          171 VGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE----------------  231 (340)
Q Consensus       171 V~~lv~~~---~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~----------------  231 (340)
                      .++++.+.   .-+||+++|.     ..|.|.+|||++++||++.+||+||+.||||+.+....                
T Consensus        37 ~~~i~~~~~~~~l~vLl~~r~-----~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~  111 (186)
T cd03670          37 DGSIHPKSGKPILQFVAIKRP-----DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKD  111 (186)
T ss_pred             CEEEEecCCCCeeEEEEEEeC-----CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhccc
Confidence            34455543   2378888885     36899999999999999999999999999976531110                


Q ss_pred             EEEEE-eeccCCC----c-eEEEEEEEEEecC--CCcccC-CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          232 VIAFR-HAHNVAF----Q-KSDLFFICMLKPL--STEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       232 ~l~~~-~~~~~~~----~-~~~~~f~~~~~~~--~~~~~~-~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                      .+..+ .....+.    . ...+.|.+.....  .....+ ..+|..+++|+++++++.+.+   +|  .+|++.+++
T Consensus       112 ~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~---dH--~~Il~~a~~  184 (186)
T cd03670         112 GVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYA---NH--SQFLKKVAE  184 (186)
T ss_pred             ccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccccccc---CH--HHHHHHHHH
Confidence            11111 1111111    1 1233333332110  011112 246788999999999986544   44  677776654

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN02791 Nudix hydrolase homolog

Probab=99.32  E-value=7.5e-12  Score=131.01  Aligned_cols=114  Identities=18%  Similarity=0.390  Sum_probs=82.9

Q ss_pred             eEEEEEEEeC-CceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEee----cc
Q 019517          169 VGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHA----HN  240 (340)
Q Consensus       169 v~V~~lv~~~-~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~--~~~l~~~~~----~~  240 (340)
                      .++.++++|. +++|||+||...+..++|.|++ ||||++.||+..+||+||+.||+||.+..  ..+++.+..    ..
T Consensus        33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~  112 (770)
T PLN02791         33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIND  112 (770)
T ss_pred             EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccC
Confidence            3488999996 6899999998888889999999 79999999999999999999999998542  344443211    11


Q ss_pred             CCCc--eEEEEEEEEEe-cC-CCcccCCcCceeeEEEEeccccccC
Q 019517          241 VAFQ--KSDLFFICMLK-PL-STEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       241 ~~~~--~~~~~f~~~~~-~~-~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ..+.  ....+|++... +. ..++.++++|+.+++|++++|+.++
T Consensus       113 g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~  158 (770)
T PLN02791        113 GKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA  158 (770)
T ss_pred             CCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence            1111  23334444321 11 1256678899999999999999744

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.29  E-value=5.1e-11  Score=98.56  Aligned_cols=112  Identities=29%  Similarity=0.454  Sum_probs=70.5

Q ss_pred             EEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHH-HHHHHHHHHhCCcce--eeEEEEEEeeccCCCc--
Q 019517          171 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK-GAVREVKEETGVDTE--FVEVIAFRHAHNVAFQ--  244 (340)
Q Consensus       171 V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~e-AAiREv~EETGi~~~--~~~~l~~~~~~~~~~~--  244 (340)
                      +.+++.... ++||++++...    .+.|.+|||++++||++.+ ||+||++||||+.+.  ....++.+........  
T Consensus        14 ~~~~~~~~~~~~vl~~~~~~~----~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   89 (161)
T COG0494          14 VAVLVGRDGPGEVLLAQRRDD----GGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV   89 (161)
T ss_pred             EEEEEecCCCCEEeEEEcccc----CCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc
Confidence            344444333 78999988632    1699999999999999988 999999999999988  4555554443332221  


Q ss_pred             --eEEE-EEEEEEec-CCCcccCC---cCceeeEEEEeccccccCCCCC
Q 019517          245 --KSDL-FFICMLKP-LSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       245 --~~~~-~f~~~~~~-~~~~~~~~---~~E~~~~~Wv~leel~~~~~~~  286 (340)
                        .... ++.+.... ........   ..|...+.|+++.++.......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  138 (161)
T COG0494          90 GGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE  138 (161)
T ss_pred             cceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence              1222 22222111 11111111   2578899999999988765543

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.25  E-value=1.7e-11  Score=102.38  Aligned_cols=126  Identities=17%  Similarity=0.250  Sum_probs=80.3

Q ss_pred             eeEEEEEEEeCCc---eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-eccCC-
Q 019517          168 QVGVGGFVINDNN---EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-AHNVA-  242 (340)
Q Consensus       168 ~v~V~~lv~~~~~---~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~-~~~~~-  242 (340)
                      +..++++++..++   +|||++-.+    .+..|-+|+|++|+||+..+||+||+.||.|+.......++... ..... 
T Consensus         9 r~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~   84 (145)
T KOG2839|consen    9 RLVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKH   84 (145)
T ss_pred             EEEEEeeeeeecCcceEEEEEecCC----CCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhh
Confidence            3556777777433   899998763    35679999999999999999999999999999988777443322 21111 


Q ss_pred             Cce-EEEEEEEEEecCCCcccC-CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517          243 FQK-SDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  301 (340)
Q Consensus       243 ~~~-~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~  301 (340)
                      ... ....|...... ..+.-+ ...|..+.+|+.++|.....-   +..++..+..+++.
T Consensus        85 ~~~~k~~~~~l~v~e-~le~wp~~~~~~r~r~W~~ledA~~~~~---~~~m~~al~e~~~~  141 (145)
T KOG2839|consen   85 RTKPKGVMYVLAVTE-ELEDWPESEHEFREREWLKLEDAIELCQ---HKWMKAALEEFLQF  141 (145)
T ss_pred             cccccceeehhhhhh-hcccChhhhcccceeEEeeHHHHHHHHh---hHHHHHHHHHHHHH
Confidence            111 11233322211 111111 234588999999999877543   33455555555544

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.09  E-value=1e-09  Score=96.04  Aligned_cols=101  Identities=21%  Similarity=0.232  Sum_probs=69.5

Q ss_pred             ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCceEEEEEEEEEe-c
Q 019517          180 NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQKSDLFFICMLK-P  256 (340)
Q Consensus       180 ~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~~~~~~f~~~~~-~  256 (340)
                      -.++|+++. +++.++-..++|+|.||.||++..||+|||+||||+.-...  ....+..+..+......+.+..... +
T Consensus        88 ~~ivL~kQf-RpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v~idg~~p  166 (225)
T KOG3041|consen   88 PYIVLVKQF-RPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVVDIDGDVP  166 (225)
T ss_pred             EEEEEEEee-cCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEEEecCCCc
Confidence            358888884 88888889999999999999999999999999999985433  3344444433222233333333332 1


Q ss_pred             CCC--cccCCcCceeeEEEEecccccc
Q 019517          257 LST--EIKVDDLEIKGAKWMPFMEFVK  281 (340)
Q Consensus       257 ~~~--~~~~~~~E~~~~~Wv~leel~~  281 (340)
                      .+.  ...+++.|..++.-+++.+|.+
T Consensus       167 Enqrp~q~ledgEfIev~~i~~~~L~~  193 (225)
T KOG3041|consen  167 ENQRPVQQLEDGEFIEVFLIPLSELWR  193 (225)
T ss_pred             cccCccccCCCCceEEEEEeeHHHHHH
Confidence            111  1234568899999999988865

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.07  E-value=2e-09  Score=87.28  Aligned_cols=109  Identities=18%  Similarity=0.311  Sum_probs=73.7

Q ss_pred             EEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEE
Q 019517          173 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC  252 (340)
Q Consensus       173 ~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~  252 (340)
                      ++++..++++||.||. ..+.++|.|+||+|.++.+|+..++..||+.||.++   ....++...+..+.+.....+|.+
T Consensus         7 ~~ii~~~~~~ll~kR~-~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~   82 (118)
T cd03431           7 VVVIRNDGRVLLEKRP-EKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLA   82 (118)
T ss_pred             EEEEecCCeEEEEECC-CCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEE
Confidence            3334456899999996 567889999999999999999999999999998775   122233333333444434445555


Q ss_pred             EEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHH
Q 019517          253 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVI  295 (340)
Q Consensus       253 ~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il  295 (340)
                      ....  +.     .+..+++|++++++.+++++..   +++++
T Consensus        83 ~~~~--~~-----~~~~~~~W~~~eel~~~~~p~~---~~kil  115 (118)
T cd03431          83 RLEG--DL-----LAPDEGRWVPLEELDEYALPTV---MRKIL  115 (118)
T ss_pred             EEeC--CC-----cCccccEEccHHHHhhCCCCHH---HHHHH
Confidence            4421  11     2345779999999999877543   44544

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.97  E-value=1.5e-09  Score=97.66  Aligned_cols=112  Identities=21%  Similarity=0.277  Sum_probs=79.2

Q ss_pred             EEEEEEEeC-C--ceEEEEEeccCCCCCCCceEcceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce
Q 019517          170 GVGGFVIND-N--NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK  245 (340)
Q Consensus       170 ~V~~lv~~~-~--~~VLLvqr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~  245 (340)
                      +|.+.+++. +  -+|||.+|...-..++|.-.||||..|+. ++-.++|.||.+||.|++.+....++...+.....+.
T Consensus        45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~  124 (246)
T KOG3069|consen   45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGW  124 (246)
T ss_pred             cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCc
Confidence            355555543 2  47999999876677899999999999984 5677899999999999999877777654443333332


Q ss_pred             EEEEEEEEEecCC--CcccCCcCceeeEEEEecccccc
Q 019517          246 SDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVK  281 (340)
Q Consensus       246 ~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~leel~~  281 (340)
                      ...-+++.+....  ....+...|..++.|+|++++..
T Consensus       125 ~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~  162 (246)
T KOG3069|consen  125 SVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL  162 (246)
T ss_pred             ccceeEEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence            3322333322211  34556789999999999999975

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.87  E-value=4.7e-09  Score=90.41  Aligned_cols=116  Identities=14%  Similarity=0.273  Sum_probs=86.4

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceee---EEEE---EEeeccCC
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFV---EVIA---FRHAHNVA  242 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~---~~l~---~~~~~~~~  242 (340)
                      +..++++|.+|++||.||...+..+++.|.=- .||--+||+..+||+|-+.+|.||+....   +++.   +.......
T Consensus        35 AFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~  114 (185)
T COG1443          35 AFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDG  114 (185)
T ss_pred             hhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCC
Confidence            46789999999999999988888999999854 68888999999999999999999998732   2221   22222223


Q ss_pred             CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      ....-+.++...+..+ .+.++++|..+++|++.+++..+....
T Consensus       115 ~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~~  157 (185)
T COG1443         115 IVENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDAT  157 (185)
T ss_pred             cceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcCC
Confidence            3333444444443332 566778999999999999998875443

>PLN02839 nudix hydrolase

Probab=98.70  E-value=3.8e-07  Score=88.03  Aligned_cols=170  Identities=18%  Similarity=0.251  Sum_probs=100.8

Q ss_pred             ChhHHHHHHHHHHHHHHhcCceeEEEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEE--
Q 019517           95 DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVG--  172 (340)
Q Consensus        95 ~~~~f~~~l~~~l~~w~~~~~~~vW~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~--  172 (340)
                      ++++-...|..-+..|+..+.=.-|      ..++-++..  .|  .  .+-++.+     +. ...+.......||.  
T Consensus       148 t~~~Rt~al~~v~~~lr~~g~~~gW------RnE~y~V~~--~~--~--~~~l~~i-----ER-aA~~lfGi~tyGVHlN  209 (372)
T PLN02839        148 KPEDRTRAVADVIKILGDKGIIPGI------RNELYPVKP--SF--N--APVFFSL-----ER-AAAPYFGIKGYGVHMN  209 (372)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCCCc------ccCcccccc--CC--C--CcceEEE-----ee-ccccccCceeEEEEEE
Confidence            6788889999999999998761113      111111110  00  0  1111111     11 11121111222333  


Q ss_pred             EEEEe-CCceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCccee---eEEEEEEeecc-CCCc-e
Q 019517          173 GFVIN-DNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEF---VEVIAFRHAHN-VAFQ-K  245 (340)
Q Consensus       173 ~lv~~-~~~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~---~~~l~~~~~~~-~~~~-~  245 (340)
                      +++.. .+.++++.||...+..++|+|+ +.||++..||++.++++||..||.||....   ....+...... ...+ .
T Consensus       210 Gyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~  289 (372)
T PLN02839        210 GYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFK  289 (372)
T ss_pred             EEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccc
Confidence            33322 3467999999988889999999 568999999999999999999999997542   22233222211 1111 2


Q ss_pred             EEEEEEEEEe-cCCCcccCCcCceeeEEEEeccccccC
Q 019517          246 SDLFFICMLK-PLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       246 ~~~~f~~~~~-~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ..+.|++.+. +.+..+.+++.|++++.+++++|+.+.
T Consensus       290 ~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~  327 (372)
T PLN02839        290 RDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANV  327 (372)
T ss_pred             cCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHH
Confidence            3345555443 222334567899999999999999743

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.67  E-value=8.2e-08  Score=78.21  Aligned_cols=106  Identities=19%  Similarity=0.223  Sum_probs=64.3

Q ss_pred             EEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEE
Q 019517          173 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC  252 (340)
Q Consensus       173 ~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~  252 (340)
                      +++++.+|++||.||. ..+...|.|+||.-.++. ++..+++.+.+.+..|+.+.....++...+..+.......+|.+
T Consensus         2 ~~i~~~~~~~Ll~kRp-~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~   79 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRP-EKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV   79 (114)
T ss_dssp             EEEEETTSEEEEEE---SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred             EEEEEeCCEEEEEECC-CCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence            5678889999999997 678899999999988774 33455566666678888776666666665655655555566666


Q ss_pred             EEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          253 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       253 ~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      .+......      +..+.+|++++++.+++++.
T Consensus        80 ~~~~~~~~------~~~~~~W~~~~~l~~~~~p~  107 (114)
T PF14815_consen   80 EVSADPPA------EPEEGQWVSLEELDQYPLPT  107 (114)
T ss_dssp             EEE-SS----------TTEEEEEGGGGGGS---H
T ss_pred             EecCCCCC------CCCCcEEEEHHHHhhCCCCH
Confidence            65432111      35688999999999988865

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.55  E-value=5.4e-07  Score=73.75  Aligned_cols=124  Identities=20%  Similarity=0.247  Sum_probs=77.2

Q ss_pred             eEEEEEEEe-CCc--eEEEEEeccCC---CCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee-eEEEEEEeeccC
Q 019517          169 VGVGGFVIN-DNN--EVLVVQEKYCN---PAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF-VEVIAFRHAHNV  241 (340)
Q Consensus       169 v~V~~lv~~-~~~--~VLLvqr~~~~---~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~-~~~l~~~~~~~~  241 (340)
                      ..++++++. ..|  .|||+.-- ++   ....|.|.+|.|....||++..||+||.-||+||.+.- ...++.   ...
T Consensus         4 ~SAGvLlYR~~aG~v~VLLvHPG-GPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~---~kQ   79 (161)
T COG4119           4 LSAGVLLYRARAGVVDVLLVHPG-GPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGS---LKQ   79 (161)
T ss_pred             ccceeEEEEecCCCEEEEEecCC-CCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhh---hcc
Confidence            346777876 233  56676542 22   12468899999999999999999999999999998731 122221   111


Q ss_pred             CCceEEEEE----------------EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHH
Q 019517          242 AFQKSDLFF----------------ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI  297 (340)
Q Consensus       242 ~~~~~~~~f----------------~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~  297 (340)
                      .-++..+.|                -....+.++..+. -.|...+.|+++.+.....+..+..++.++++.
T Consensus        80 ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~-FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~  150 (161)
T COG4119          80 SGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRK-FPEVDRAGWFPLAEARTKILKGQRPFLDRLMAH  150 (161)
T ss_pred             CCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCcccc-CcccccccceecHHHHhHHhhccchHHHHHHHH
Confidence            122222222                2222233333322 267889999999999877666664455555444

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.85  E-value=2.1e-05  Score=69.37  Aligned_cols=129  Identities=19%  Similarity=0.311  Sum_probs=86.6

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEc---------ceeeec-CCCCHHHHHHHHHHHHhCCcceeeE-----EEE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL---------PTGFID-ESEEIFKGAVREVKEETGVDTEFVE-----VIA  234 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l---------PGG~ve-~GEs~~eAAiREv~EETGi~~~~~~-----~l~  234 (340)
                      +..++++|.++++||.||...+-.+++.|.=         |++..+ .+.....||+|-+.-|.||..+.+.     +++
T Consensus        54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~lt  133 (225)
T KOG0142|consen   54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLT  133 (225)
T ss_pred             eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccce
Confidence            4688999999999999998777777888862         222211 1335789999999999999876543     344


Q ss_pred             EEe---eccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC---CchHHHHHHHHH
Q 019517          235 FRH---AHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG---DCMFKKVIDICI  299 (340)
Q Consensus       235 ~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~---~~~~~~il~~~l  299 (340)
                      .++   ...+.+|..-+-|+..+.. +-.++++++|+.+++|++.+|+..+.-...   ..+++.|.+..+
T Consensus       134 rihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~l  203 (225)
T KOG0142|consen  134 RIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENFL  203 (225)
T ss_pred             eeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHHHHHH
Confidence            332   2334555555555544432 456777889999999999999876532221   236666665543

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.54  E-value=0.0001  Score=65.97  Aligned_cols=67  Identities=22%  Similarity=0.363  Sum_probs=48.1

Q ss_pred             ccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeCC---ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHH
Q 019517          140 YHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAV  216 (340)
Q Consensus       140 ~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~---~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAi  216 (340)
                      |.....-+-+.++|.++...             +++....   -+++.+||.     ..|.|.+|||.+|+||.+-.+.+
T Consensus       109 wGPNHaadPiVtRwkrd~~g-------------ai~~~sgk~ile~vavkr~-----d~~~WAiPGGmvdpGE~vs~tLk  170 (275)
T KOG4195|consen  109 WGPNHAADPIVTRWKRDEDG-------------AICRKSGKKILEFVAVKRP-----DNGEWAIPGGMVDPGEKVSATLK  170 (275)
T ss_pred             cCCccccCcceeeeeecCCC-------------CeeecccceeeEEEEEecC-----CCCcccCCCCcCCchhhhhHHHH
Confidence            33334456677888875432             1121211   257788886     67899999999999999999999


Q ss_pred             HHHHHHhC
Q 019517          217 REVKEETG  224 (340)
Q Consensus       217 REv~EETG  224 (340)
                      ||+.||.=
T Consensus       171 Ref~eEa~  178 (275)
T KOG4195|consen  171 REFGEEAM  178 (275)
T ss_pred             HHHHHHHH
Confidence            99999963

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.47  E-value=0.001  Score=56.99  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=73.6

Q ss_pred             EEEEEeCCceEEEEEeccCCCC--CCCceEc-ceeeecCCCC--HH-----HHHHHHHHHHhCCc---ceeeEEEEEEee
Q 019517          172 GGFVINDNNEVLVVQEKYCNPA--FAGLWKL-PTGFIDESEE--IF-----KGAVREVKEETGVD---TEFVEVIAFRHA  238 (340)
Q Consensus       172 ~~lv~~~~~~VLLvqr~~~~~~--~~g~W~l-PGG~ve~GEs--~~-----eAAiREv~EETGi~---~~~~~~l~~~~~  238 (340)
                      .+++.+.+ +||+-+|-.+.+.  -.+.+.+ -|||+..++-  +.     -.+.||+.||.++.   ...+.++++...
T Consensus        65 Yvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd  143 (203)
T COG4112          65 YVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND  143 (203)
T ss_pred             EEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence            45566554 9999998643321  2345555 4899987642  22     23779999999998   556688888877


Q ss_pred             ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEecccccc
Q 019517          239 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK  281 (340)
Q Consensus       239 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~  281 (340)
                      .....++.++-.++..+....+....+.+..+.+|+.++++.+
T Consensus       144 d~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         144 DTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             CCcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence            6666666665544444333344445567788999999999987

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.15  E-value=6.6e-05  Score=71.01  Aligned_cols=101  Identities=23%  Similarity=0.305  Sum_probs=64.5

Q ss_pred             EEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCceE
Q 019517          170 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQKS  246 (340)
Q Consensus       170 ~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~~~  246 (340)
                      ..+++++|.. .++||++..     ....|.+|-|.+..+|+-.+||+|||.||||.+....  ...++   .....+..
T Consensus        84 v~ga~ild~~~sr~llv~g~-----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~I---e~nI~dq~  155 (348)
T KOG2937|consen   84 VRGAIILDEKRSRCLLVKGW-----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGI---ETNIRDQL  155 (348)
T ss_pred             CchHhhhhhhhhhhheeece-----ecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCc---ccchhhce
Confidence            3577888754 578888875     3456999999999999999999999999999987532  11111   01111222


Q ss_pred             EEEEEEE-Eec-CCCcccCCcCceeeEEEEecccc
Q 019517          247 DLFFICM-LKP-LSTEIKVDDLEIKGAKWMPFMEF  279 (340)
Q Consensus       247 ~~~f~~~-~~~-~~~~~~~~~~E~~~~~Wv~leel  279 (340)
                      ...|+.. +.. ....+. --.|+..+.|..++++
T Consensus       156 ~~~fIi~gvs~d~~f~~~-v~~eis~ihW~~l~~l  189 (348)
T KOG2937|consen  156 VRLFIINGVSEDTNFNPR-VRKEISKIHWHYLDHL  189 (348)
T ss_pred             eeeeeeccceeeeecchh-hhccccceeeeehhhh
Confidence            2223321 111 111111 1367889999999998

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.85  E-value=0.0063  Score=59.33  Aligned_cols=111  Identities=12%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF  249 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~  249 (340)
                      ...++++..++++||.||. ..+.+.|.|+||..  +. +    ...++..|+.|+.......++...+..+++......
T Consensus       232 ~~~~~~~~~~~~~~l~~r~-~~gl~~gl~~fP~~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~  303 (350)
T PRK10880        232 TGYFLLLQHGDEVWLEQRP-PSGLWGGLFCFPQF--AD-E----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVP  303 (350)
T ss_pred             EEEEEEEEECCEEEEEECC-ccChhhccccCCCC--cc-h----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEE
Confidence            3444555566899999986 56788999999963  21 1    124566688887532222222222222222222223


Q ss_pred             EEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHH
Q 019517          250 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID  296 (340)
Q Consensus       250 f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~  296 (340)
                      |.+....  ...... .  .+..|++++++..++++..   ++++++
T Consensus       304 ~~~~~~~--~~~~~~-~--~~~~w~~~~~~~~~~~p~~---~~k~l~  342 (350)
T PRK10880        304 MWLPVSS--FTGCMD-E--GNGLWYNLAQPPSVGLAAP---VERLLQ  342 (350)
T ss_pred             EEEEccc--cccccC-C--cCCeEechHHhcccCCcHH---HHHHHH
Confidence            3333211  110011 1  2346999999999888654   445543

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.38  E-value=0.011  Score=55.51  Aligned_cols=86  Identities=15%  Similarity=0.024  Sum_probs=62.3

Q ss_pred             eEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCceEEEEEEEEEecCC----CcccCCcCceeeE
Q 019517          198 WKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQKSDLFFICMLKPLS----TEIKVDDLEIKGA  271 (340)
Q Consensus       198 W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~E~~~~  271 (340)
                      .++.+|.|+..-+..+-|.||..||.|+++...  +.+..+.+..+..+....+|+|..+...    +.-..+++|..+.
T Consensus       286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEv  365 (405)
T KOG4432|consen  286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEV  365 (405)
T ss_pred             eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeE
Confidence            456678888777889999999999999987543  4556666666777777777888764322    1222356788888


Q ss_pred             EEEeccccccCC
Q 019517          272 KWMPFMEFVKQP  283 (340)
Q Consensus       272 ~Wv~leel~~~~  283 (340)
                      .-+++++++.+.
T Consensus       366 v~lsle~a~~~~  377 (405)
T KOG4432|consen  366 VRLSLEDAPSLY  377 (405)
T ss_pred             EEechhhhhHHH
Confidence            899999987753

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=95.24  E-value=0.058  Score=50.74  Aligned_cols=86  Identities=17%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             eEEEEEEEeCC-ceEEEEEeccCCCCC-------------------------CCceEcceeeecCCCCHHHHHHHHHHHH
Q 019517          169 VGVGGFVINDN-NEVLVVQEKYCNPAF-------------------------AGLWKLPTGFIDESEEIFKGAVREVKEE  222 (340)
Q Consensus       169 v~V~~lv~~~~-~~VLLvqr~~~~~~~-------------------------~g~W~lPGG~ve~GEs~~eAAiREv~EE  222 (340)
                      -+|.+++++.+ .++|++++. ++...                         .-..++.||.|+..-++.+-|..||.||
T Consensus        27 ~~v~ill~~r~~eq~l~vrqf-r~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~ee  105 (405)
T KOG4432|consen   27 SSVSILLFHRDLEQFLLVRQF-RPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEE  105 (405)
T ss_pred             cceEEEEEccchhhhehhhhh-chhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHH
Confidence            45778888855 567788774 22111                         1235688999999999999999999999


Q ss_pred             hCCcceeeEEEEEEe--eccCCCceEEEEEEEEEe
Q 019517          223 TGVDTEFVEVIAFRH--AHNVAFQKSDLFFICMLK  255 (340)
Q Consensus       223 TGi~~~~~~~l~~~~--~~~~~~~~~~~~f~~~~~  255 (340)
                      .|+++...+++..+.  ......+.-.+.|+|...
T Consensus       106 cgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~  140 (405)
T KOG4432|consen  106 CGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID  140 (405)
T ss_pred             hCCcCChhHceEEEEEEeccccCccchheeeeecc
Confidence            999987665543322  222223334456666653

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=95.13  E-value=0.071  Score=48.92  Aligned_cols=48  Identities=17%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             ceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcc
Q 019517          180 NEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDT  227 (340)
Q Consensus       180 ~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~  227 (340)
                      -++.+.||+..+..|+|+|+ ..||++-.|-.+.++|+.|..||+.++.
T Consensus       148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~  196 (306)
T KOG4313|consen  148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS  196 (306)
T ss_pred             eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence            36889999888889999998 6789999999999999999999999987

>COG4111 Uncharacterized conserved protein [General function prediction only]

Probab=94.68  E-value=0.18  Score=46.57  Aligned_cols=42  Identities=19%  Similarity=0.194  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhcc--cCCCCCCcCcccc-hhhhhhhhhhhcCCC
Q 019517          292 KKVIDICIARLRKR--YCGLYPHQLVSAF-DGQTSSLYYNDSDTQ  333 (340)
Q Consensus       292 ~~il~~~l~~l~~~--y~g~~~~~l~~~f-~~~~~~ly~~~~~~~  333 (340)
                      ++|++.++++++.+  |.|+.|.++|..| .-+++..-+.+.++-
T Consensus       222 RRIlATa~aRLR~KIKYRPVVFELmp~~FTLlqLQrtVEAisGr~  266 (322)
T COG4111         222 RRILATALARLRAKIKYRPVVFELMPPEFTLLQLQRTVEAISGRL  266 (322)
T ss_pred             HHHHHHHHHHHHhcccccceEEEecCchhhHHHHHHHHHHHcCcc
Confidence            88999999999987  9999999999999 888887777776654

>PRK13910 DNA glycosylase MutY; Provisional

Probab=92.80  E-value=0.59  Score=44.52  Aligned_cols=27  Identities=26%  Similarity=0.596  Sum_probs=20.5

Q ss_pred             EEEEeCCceEEEEEeccCCCCCCCceEcce
Q 019517          173 GFVINDNNEVLVVQEKYCNPAFAGLWKLPT  202 (340)
Q Consensus       173 ~lv~~~~~~VLLvqr~~~~~~~~g~W~lPG  202 (340)
                      ++++ .++++||.||.  .+.+.|.|+||+
T Consensus       191 ~~~~-~~~~~ll~kr~--~~l~~gl~~fP~  217 (289)
T PRK13910        191 GVVI-QNNQIALEKIE--QKLYLGMHHFPN  217 (289)
T ss_pred             EEEE-ECCEEEEEECC--CchhcccccCCC
Confidence            3444 35789998874  468999999996

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=92.77  E-value=0.42  Score=42.47  Aligned_cols=49  Identities=24%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             EEEEEeCC--ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCc
Q 019517          172 GGFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD  226 (340)
Q Consensus       172 ~~lv~~~~--~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~  226 (340)
                      +++++...  -.|||.|..      ...|.+|||.+.+||+..++..|.+.+-.|..
T Consensus        48 ~Vllvh~h~~PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   48 GVLLVHEHGHPHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             EEEEEEETTEEEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             EEEEEecCCCcEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            34444433  369999864      33799999999999999999999999999986

...

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=91.42  E-value=0.42  Score=41.53  Aligned_cols=48  Identities=27%  Similarity=0.460  Sum_probs=38.2

Q ss_pred             EEEEEeCC--ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCC
Q 019517          172 GGFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV  225 (340)
Q Consensus       172 ~~lv~~~~--~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi  225 (340)
                      +++++.+.  -.|||.|-.      .-.+++|||..++||+-.+...|-+-|-.|-
T Consensus        74 gvlivheH~lPHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   74 GVLIVHEHNLPHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLGR  123 (221)
T ss_pred             eeEEEeecCCCeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence            34444433  578888753      4579999999999999999999999999993

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=90.06  E-value=0.79  Score=44.43  Aligned_cols=103  Identities=14%  Similarity=0.176  Sum_probs=58.2

Q ss_pred             CCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517          162 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV  241 (340)
Q Consensus       162 p~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~  241 (340)
                      |.....+..++.++.+.+|+++|.+|. ..+...|.|++|....+.  ..     .+...+.|+..   +.++.+.+..+
T Consensus       229 ~k~~~~~~~~~~~~~~~~~~~~l~kr~-~~gl~~gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H~ft  297 (342)
T COG1194         229 PKKKLPRRFAAFLILNRDGEVLLEKRP-EKGLLGGLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRHTFT  297 (342)
T ss_pred             cccccchheeeEEEEccCcchhhhhCc-ccCceecccccccccccc--hh-----hhHhhhccccc---ccccceeeeee
Confidence            343334556777788888999999986 567889999999875544  22     22223344433   22322222222


Q ss_pred             CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       242 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      .+..... +....  ..       .+. +..|++++++....++.
T Consensus       298 h~~l~i~-~~a~~--~~-------~~~-~~~w~~~~~~~~~~l~~  331 (342)
T COG1194         298 HFRLTIE-LRASA--SL-------VLS-DGRWYNLSDLESIGLPA  331 (342)
T ss_pred             EEEEEEE-EEeec--cc-------CCC-CceeccccccccccccH
Confidence            2221111 11111  11       222 78999999999877754

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=85.42  E-value=2.1  Score=39.58  Aligned_cols=98  Identities=14%  Similarity=0.210  Sum_probs=58.7

Q ss_pred             ceEEEEEeccCCCCCCCceEcceeee-cCCCCHHHHHHHHHHHHhCCcceee----EEEEEE--eecc---CCC--ceEE
Q 019517          180 NEVLVVQEKYCNPAFAGLWKLPTGFI-DESEEIFKGAVREVKEETGVDTEFV----EVIAFR--HAHN---VAF--QKSD  247 (340)
Q Consensus       180 ~~VLLvqr~~~~~~~~g~W~lPGG~v-e~GEs~~eAAiREv~EETGi~~~~~----~~l~~~--~~~~---~~~--~~~~  247 (340)
                      .-+||++++.+   ..+.|.||-+.. ++++++..+|.|++++-.|=....+    ..++..  ....   ...  +...
T Consensus       139 ~LyLLV~~k~g---~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~  215 (263)
T KOG4548|consen  139 KLYLLVKRKFG---KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKV  215 (263)
T ss_pred             eEEEEEeeccC---ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCccccccccccccee
Confidence            34888886533   456899999999 9999999999999999988654332    122211  1100   111  1112


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~  283 (340)
                      .+|-+.+..  +.. .+..-..+..|++-+|+.+..
T Consensus       216 ff~k~~lv~--~~~-~kn~n~edfvWvTkdel~e~l  248 (263)
T KOG4548|consen  216 FFFKASLVA--NSN-QKNQNKEDFVWVTKDELGEKL  248 (263)
T ss_pred             EEeeeeecc--ccc-hhcccccceEEechHHHhhhc
Confidence            333333322  211 122334469999999998753

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=80.66  E-value=4.2  Score=38.44  Aligned_cols=32  Identities=25%  Similarity=0.228  Sum_probs=24.0

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEccee
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTG  203 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG  203 (340)
                      ..+++.+.++++|+.+|. ..+...|.|+||+.
T Consensus       230 ~~~~~~~~~~~~~~~~r~-~~~~~~gl~~~p~~  261 (275)
T TIGR01084       230 YFLVLQNYDGEVLLEQRP-EKGLWGGLYCFPQF  261 (275)
T ss_pred             EEEEEEeCCCeEEEEeCC-CCchhhccccCCCC
Confidence            334444567899999986 45678999999973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
3h95_A	199	Crystal Structure Of The Nudix Domain Of Nudt6 Leng		4e-16
3fxt_A	113	Crystal Structure Of The N-Terminal Domain Of Human		5e-08
3o8s_A	206	Crystal Structure Of An Adp-Ribose Pyrophosphatase		2e-05
1sjy_A	159	Crystal Structure Of Nudix Hydrolase Dr1025 From De		2e-05
1vc8_A	126	Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydr		8e-05
3gz5_A	240	Crystal Structure Of Shewanella Oneidensis Nrtr Len		1e-04
3gz8_A	162	Cocrystal Structure Of Nudix Domain Of Shewanella O		1e-04
1vc9_A	126	Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydr		2e-04
3hhj_A	158	Crystal Structure Of Mutator Mutt From Bartonella H		8e-04

>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6 Length = 199

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 164 NATHQVGVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 222
           + +HQVGV G V +++  ++LVVQ++        +WK P G  +  E+I   AVREV EE
Sbjct: 22  SMSHQVGVAGAVFDESTRKILVVQDR---NKLKNMWKFPGGLSEPEEDIGDTAVREVFEE 78
Query: 223 TGVDTEFVEVIAFRHAHNV--AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWM------ 274
           TG+ +EF  V++ R  H    AF KSD++ IC LKP S  I     E    +WM      
Sbjct: 79  TGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLA 138
Query: 275 ------PFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLY 310
                 P    V + L+ G       ID+ +  L   Y GL+
Sbjct: 139 KTENTTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLF 180

>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6 Length = 113

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 80  DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 135
           D + G+ V   RL +    D  AF   L+ ++  WR   +  +WL +P+  +  +  A  
Sbjct: 30  DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 89
Query: 136 EGFKYHHAEPEYLMLTYWIPDGP 158
            GF +HHAE +   LT W+ +GP
Sbjct: 90  LGFCFHHAESDSSTLTLWLREGP 112

>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase (Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A Resolution Length = 206

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 175 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 234
            I   +++L+VQE        GLW LP G+ D  + +    V+EVKEE G+D E   V+A
Sbjct: 76  AIFQEDKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVA 129
Query: 235 F--RHAHN---VAFQKSDLFFICML 254
              +H +N    A + + +F +C L
Sbjct: 130 ILDKHKNNPAKSAHRVTKVFILCRL 154

>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From Deinococcus Radiodurans Length = 159

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 170 GVGGFVINDNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225
             G  ++N+  ++L+VQEK    +P  AGLW +P+G +++ E     AVRE  EETG+
Sbjct: 15  AAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72

>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase Ndx1-Ap6a Complex Length = 126

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
           ++G GG V N   EVL+++++       G W  P G  +  E + + AVREV EETGV  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRA 55
Query: 228 EFV 230
           E +
Sbjct: 56  EVL 58

>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Length = 240

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 174 FVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDES--EEIFKGAVREVKEETGVDTEFV 230
           F  +D   +VL+VQ    N  F GLW LP GFIDE+  E + +  +R++ E+T V   ++
Sbjct: 30  FTYHDQQLKVLLVQRS--NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYI 87
Query: 231 EVIAF--RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284
           E +     ++ +       + +  ++   + +I++    +   KW P  + ++ PL
Sbjct: 88  EQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIAS--VSDVKWWPLADVLQMPL 141

>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella Oneidensis Nrtr Complexed With Adp Ribose Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 174 FVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDES--EEIFKGAVREVKEETGVDTEFV 230
           F  +D   +VL+VQ    N  F GLW LP GFIDE+  E + +  +R++ E+T V   ++
Sbjct: 30  FTYHDQQLKVLLVQRS--NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYI 87
Query: 231 EVIAF--RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284
           E +     ++ +       + +  ++   + +I++    +   KW P  + ++ PL
Sbjct: 88  EQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIAS--VSDVKWWPLADVLQMPL 141

>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase E50q Mutant- Mg2+-atp Complex Length = 126

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
           ++G GG V N   EVL+++++       G W  P G  +  E + + AVREV E+TGV  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEQTGVRA 55
Query: 228 EFV 230
           E +
Sbjct: 56  EVL 58

>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 156 DGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGA 215
            GP  +P  ++  + V   +++ +N VL+ Q      + AGLW+ P G +++ E      
Sbjct: 17  QGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGK-SLAGLWEFPGGKVEQGETPEASL 75
Query: 216 VREVKEETGVDTEFVEVIAF---RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAK 272
           +RE++EE GV  +   +       H +        L+F    K ++   +  +L     K
Sbjct: 76  IRELEEELGVHVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNL-----K 130
Query: 273 WMPFMEFVKQPLIQGDCMFKKVI 295
           W+   +  K P+ + D    +V+
Sbjct: 131 WIFINDLDKYPMPEADKPLVQVL 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	5e-52
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	6e-36
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-26
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	1e-24
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	5e-24
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	7e-23
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	1e-22
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	2e-19
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	3e-19
3grn_A	153	MUTT related protein; structural genomics, hydrola	5e-19
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	6e-18
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	9e-18
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-17
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	2e-17
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	2e-17
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	2e-16
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	9e-16
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	1e-15
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	1e-14
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	2e-13
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	7e-13
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	9e-13
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	1e-12
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	2e-12
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-12
3f13_A	163	Putative nudix hydrolase family member; structural	3e-12
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	3e-12
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	3e-12
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	1e-11
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	1e-11
3exq_A	161	Nudix family hydrolase; protein structure initiati	4e-11
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	1e-10
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-10
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	4e-10
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	5e-10
2b06_A	155	MUTT/nudix family protein; structural genomics, P	6e-10
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	9e-10
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	3e-09
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	1e-08
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	4e-08
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	8e-08
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	9e-08
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	1e-07
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	3e-07
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	6e-07
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	6e-07
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	9e-07
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	9e-07
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	1e-06
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	1e-06
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	1e-06
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	3e-06
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	5e-06
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	6e-06
2fb1_A	226	Conserved hypothetical protein; structural genomic	9e-06
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	1e-05
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	1e-05
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	3e-05
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	3e-05
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	5e-05
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	1e-04
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	3e-04
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	5e-04
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	5e-04

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score =  170 bits (431), Expect = 5e-52
 Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 15/195 (7%)

Query: 137 GFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAG 196
              +HH+    L           +   + +HQVGV G V +++   ++V +         
Sbjct: 2   HHHHHHSSGVDL-------GTENLYFQSMSHQVGVAGAVFDESTRKILVVQDRNKLK--N 52

Query: 197 LWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSDLFFICML 254
           +WK P G  +  E+I   AVREV EETG+ +EF  V++ R  H    AF KSD++ IC L
Sbjct: 53  MWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRL 112

Query: 255 KPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY--CGLYPH 312
           KP S  I     E    +WM   +  K        +  +V  + +   R+ +    L   
Sbjct: 113 KPYSFTINFCQEECLRCEWMDLNDLAKTENTTP--ITSRVARLLLYGYREGFDKIDLTVE 170

Query: 313 QLVSAFDGQTSSLYY 327
           +L + + G    LY+
Sbjct: 171 ELPAVYTGLFYKLYH 185

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens} Length = 113

 Score =  125 bits (314), Expect = 6e-36
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 74  VLDFFDDEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAEL 129
            L    D + G+ V   RL +    D  AF   L+ ++  WR   +  +WL +P+  +  
Sbjct: 24  DLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRF 83

Query: 130 VPIAVKEGFKYHHAEPEYLMLTYWIPDGP 158
           +  A   GF +HHAE +   LT W+ +GP
Sbjct: 84  IAPAASLGFCFHHAESDSSTLTLWLREGP 112

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score =  102 bits (255), Expect = 1e-26
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 155 PDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKG 214
           P  P  L  N  +   V    +++ +EVL++QE        G W LP G ++  E I + 
Sbjct: 9   PPAPVRLRKNVCY--VVLAVFLSEQDEVLLIQEA--KRECRGSWYLPAGRMEPGETIVEA 64

Query: 215 AVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVD---DLEIKGA 271
             REVKEE G+  E   +++           S + F+ + +P    +K     D E   A
Sbjct: 65  LQREVKEEAGLHCEPETLLSVEERG-----PSWVRFVFLARPTGGILKTSKEADAESLQA 119

Query: 272 KWMPFME 278
            W P   
Sbjct: 120 AWYPRTS 126

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 96.8 bits (241), Expect = 1e-24
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 10/153 (6%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V V   VI  +++ L+V+E       A     P G ++  E I +   REV EETG    
Sbjct: 9   VTVAA-VIEQDDKYLLVEEI--PRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFL 65

Query: 229 FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLIQG 287
              +    H    +   + L F    + +S +  +  D  I  A W    E   +  +  
Sbjct: 66  PEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHR 125

Query: 288 DCMFKKVIDICIARLRKRYCGLYPHQLVSAFDG 320
             +  + I+   A  R      YP  ++  +DG
Sbjct: 126 TPLVMQCIEDYHAGKR------YPLDILQYYDG 152

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 95.2 bits (237), Expect = 5e-24
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V V   V++   + LVV+E   N     LW  P G ++  E + + A RE+ EETG+  +
Sbjct: 6   VTVAC-VVHAEGKFLVVEETI-NGK--ALWNQPAGHLEADETLVEAAARELWEETGISAQ 61

Query: 229 FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 288
               I               F   +        +  D +I   +W+   E     ++Q  
Sbjct: 62  PQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEE-----ILQAS 116

Query: 289 CMFKKVIDICIARLRKRYCGLYPHQLVSAF 318
            +   ++   I   +      YP +++  F
Sbjct: 117 NLRSPLVAESIRCYQSGQR--YPLEMIGDF 144

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 91.2 bits (227), Expect = 7e-23
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 14/136 (10%)

Query: 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
           ++G GG V N   EVL+++++       G W  P G  +  E + + AVREV EETGV  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRA 55

Query: 228 EFVEVIA-FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286
           E +  +   R+ +    ++   +F+   +        +   + GA W    E        
Sbjct: 56  EVLLPLYPTRYVNPKGVEREVHWFLM--RGEGAPRLEE--GMTGAGWFSPEEARALLAFP 111

Query: 287 GDCMFKKVIDICIARL 302
            D     ++++ + RL
Sbjct: 112 ED---LGLLEVALERL 124

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 166 THQVGVGGFVINDNNEVLVVQEKY--CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 223
                 G  ++N+  ++L+VQEK    +P  AGLW +P+G +++ E     AVRE  EET
Sbjct: 11  VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEET 70

Query: 224 GVDTEFVEVIA-FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282
           G+    V+ +  +              ++   +P  T       EI  A ++   +F + 
Sbjct: 71  GLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQL 130

Query: 283 PLIQGDCMFKKVIDICIARLRKR 305
                  M++    +  A   + 
Sbjct: 131 YAAGQIRMYQ--TKLFYADALRE 151

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 140 YHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWK 199
           +HH        T     GP  +      +VG G   I  +  +L+++ K      AG W 
Sbjct: 5   HHHHMGTLEAQT----QGPGSMQHTEQPRVGCGA-AIVRDGRILLIKRK--RAPEAGCWG 57

Query: 200 LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA--FQKSDLFFICMLKPL 257
           LP G +D  E + +   RE++EE G+  E   ++      + A         ++      
Sbjct: 58  LPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANGEHWVAPVYLA--HAF 115

Query: 258 STEIKV-DDLEIKGAKW-------MPFMEFVKQPLIQ 286
           S E +V +    +   W        P     +  L Q
Sbjct: 116 SGEPRVVEPDRHEALGWFALDDLPQPLTHATRIALEQ 152

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 81.6 bits (202), Expect = 5e-19
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225
            + + V   + N+  E L+++    +   AG W LP G ++  E + +G  REV EETG+
Sbjct: 6   PYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65

Query: 226 DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284
                ++    +      +   + F      +  ++K+   E     W+   + +    
Sbjct: 66  TMVPGDIAGQVNFELTEKKVIAIVFDG--GYVVADVKLSY-EHIEYSWVSLEKILGMET 121

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 78.8 bits (194), Expect = 6e-18
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 14/131 (10%)

Query: 165 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 224
           +T  V +   V N   E L+ +    N    G W +P G + + E +     R    E G
Sbjct: 15  STPLVSLDFIVENSRGEFLLGKRT--NRPAQGYWFVPGGRVQKDETLEAAFERLTMAELG 72

Query: 225 VDTEFVE---VIAFRHAHNVAFQKSD-------LFFICMLKPLSTEIKVDDLEIKGAKWM 274
           +            ++H ++  F  +D       L F    +    E+ + D +    +W+
Sbjct: 73  LRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRF--RVSEEELLLPDEQHDDYRWL 130

Query: 275 PFMEFVKQPLI 285
                +    +
Sbjct: 131 TSDALLASDNV 141

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 78.2 bits (193), Expect = 9e-18
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 163 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 222
            N    V     +I  N+++LV ++K       G +    G I  +E      VREVKEE
Sbjct: 14  DNTVFGVRATA-LIVQNHKLLVTKDK-------GKYYTIGGAIQVNESTEDAVVREVKEE 65

Query: 223 TGVDTEFVEVIA----FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 278
            GV  +  ++            V++   +  ++  L   +     +D + +  +W+   +
Sbjct: 66  LGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDK 125

Query: 279 FVKQPL 284
                L
Sbjct: 126 LQNIQL 131

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 80.1 bits (197), Expect = 2e-17
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 171 VGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
            G  +++    + ++V+    +      W  P G ID+ E     A+REV EETG D   
Sbjct: 104 RGAIMLDMSMQQCVLVKGWKAS----SGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 159

Query: 230 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
                      +  Q   L+ I  +   +        EI   +W   M+   
Sbjct: 160 RINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPT 211

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
            QV V G ++ ++ +VL+V++K  N      W LP G ++  E + +  +RE++EETG++
Sbjct: 22  MQVRVTG-ILIEDEKVLLVKQKVAN----RDWSLPGGRVENGETLEEAMIREMREETGLE 76

Query: 227 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKG-----AKWMPFMEFVK 281
            +  +++      + +     + F+   + +  EI +   E         + +P  E   
Sbjct: 77  VKIKKLLYVCDKPDASPSLLHITFLL--ERIEGEITLPSNEFDHNPIHDVQMVPINELSY 134

Query: 282 QPLIQGD 288
               +  
Sbjct: 135 YGFSETF 141

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 159 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVRE 218
               G  T +V +   V+  N ++L V+EK       G W LP G+ D      + A +E
Sbjct: 59  ASETGYQTPKVDIRA-VVFQNEKLLFVKEKSD-----GKWALPGGWADVGYTPTEVAAKE 112

Query: 219 VKEETGVDTEFVEVIA-----FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKW 273
           V EETG + +  +++A            A     +F  C  + +  E K    E +  ++
Sbjct: 113 VFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGC--EIIGGEKKTSI-ETEEVEF 169

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 72.5 bits (178), Expect = 9e-16
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 171 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
            G  + N+N +++L+VQ        +  W  P G I + E      +REVKEE G D   
Sbjct: 7   RGAAIFNENLSKILLVQGTE-----SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD 61

Query: 230 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
                     N+  +   +F I  +  +         EI   +W  F +  K
Sbjct: 62  YIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISK 113

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
            +   V N+  E L++Q           W  P G ++  E+  + A+R  +EE G++   
Sbjct: 19  CLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQ 74

Query: 230 VEVIA-FRHAHNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 285
           + +I  F+   N   +   K+ ++++  +K    EI++   E +  +W+   E  +    
Sbjct: 75  LTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYRWLGLEEACQLAQF 133

Query: 286 QGDCMFKKVIDICIARLRKR 305
           +     K  +      L   
Sbjct: 134 KEM---KAALQEGHQFLCSI 150

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 15/120 (12%)

Query: 159 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVRE 218
           C   G  T ++     +  ++  +LV +         GLW LP G+ D  + +    V+E
Sbjct: 61  CNETGYQTPKLDTRAAIFQEDKILLVQEND-------GLWSLPGGWCDVDQSVKDNVVKE 113

Query: 219 VKEETGVDTEFVEVIA----FRHAHN-VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKW 273
           VKEE G+D E   V+A     ++     A + + +F +C  + L  E + +  E   + +
Sbjct: 114 VKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILC--RLLGGEFQPNS-ETVASGF 170

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 18/144 (12%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
           V   V+ +N +VL+V+ K       G++  P G ++ +E   +   RE +EETG+  E +
Sbjct: 3   VTSGVLVENGKVLLVKHKR-----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57

Query: 231 EVIAFRHAHNVAFQKSDLFFICMLKPLSTE----------IKVDDLEIKGAKWMPFMEFV 280
                    N   +   L  +  +     E          +K    ++K  +W+   E  
Sbjct: 58  GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREID 117

Query: 281 KQPLIQGDCMFKKVIDICIARLRK 304
           +          +KV+ + ++ L +
Sbjct: 118 RIETFPNV---RKVVSLALSTLYR 138

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 67.7 bits (165), Expect = 7e-13
 Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 24/211 (11%)

Query: 111 RRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPD-GPCVLPGNATHQV 169
           +  N       +   + +L        F       + +    ++ +     L        
Sbjct: 149 KFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKRLWLKAPFKPNF 208

Query: 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
                ++  N+ +L+VQ K        LW LP GF++  E I +  +RE+ EET ++   
Sbjct: 209 VTVDALVIVNDHILMVQRK--AHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTH 266

Query: 230 VEVIAFRHAHNVAFQKSD------------LFFICMLKPLSTEIKVDDLEIKGAKWMPFM 277
            ++   +    V F   D            LF       L      DD   K  KW+   
Sbjct: 267 EQLAIAKRCEKV-FDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADD--AKDVKWISLG 323

Query: 278 EFVKQPLIQGDCMF---KKVIDICIARLRKR 305
             +K      D M     ++I I +    K+
Sbjct: 324 SNIKNIC---DRMLEDHYQIITILLEECGKK 351

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 65.4 bits (159), Expect = 9e-13
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 24/181 (13%)

Query: 140 YHHAEPEYLMLTYWIPDGP-CVLPGNATHQVGVGGFVIN-DNNEVLVVQEKYCNPAFAGL 197
               E +  +    + D    +   N    +    F +N + N+ L++            
Sbjct: 16  NEQEERDKELFLRCLNDFHDILTRDNTIAHLTSSAFAVNKERNKFLMIHHNI-----YNS 70

Query: 198 WKLPTGFIDESEEIFKGAVREVKEETG-------------VDTEFVEVIAFRHAHNVAFQ 244
           W    G  D  ++  K A++E+KEETG             +D   V     R  +  +  
Sbjct: 71  WAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHL 130

Query: 245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 304
             +L ++         + + + E  G  W+PF E  K      +     + +  I +L+ 
Sbjct: 131 HLNLTYLIEC-SEDETLMLKEDENSGVMWIPFNEISKYCS---EPHMIPIYEKLINKLKT 186

Query: 305 R 305
           +
Sbjct: 187 Q 187

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225
             +      V    N  +V+ +        G + LP G I+ +E   +   REV EE G+
Sbjct: 16  QTRYAAYIIVSKPENNTMVLVQAP-----NGAYFLPGGEIEGTETKEEAIHREVLEELGI 70

Query: 226 DTEFVEVIAFRHAHNVA------FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 275
             E    +     +  +      +     F++          +  +       W+ 
Sbjct: 71  SVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVA--NTWRQLSEPLE-RTNTLHWVA 123

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 170 GVGGFVINDNNEVLVVQ-----EKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 224
            V          +L+++      +       G W +P GF+DE+E   + A RE++EET 
Sbjct: 36  TVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETS 95

Query: 225 VDTEFVEVIAF-------RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFM 277
           +    +                 ++       F  ++ P + E +    +       P  
Sbjct: 96  LTDIPLIPFGVFDKPGRDPRGWIIS-----RAFYAIVPPEALEKRAAGDDAAEIGLFPMT 150

Query: 278 EFVKQPLIQGDCMF--KKVIDICIARLRKRY 306
           E ++ PL      F    ++    + + + +
Sbjct: 151 EALELPLA-----FDHLDMLKKAFSAITEEF 176

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 167 HQVGVGGFVI-NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225
            QV V  F+    N +  V+         A +W+   G  ++ E I + A RE  EE  +
Sbjct: 6   FQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEEAISETAKRESIEELNL 60

Query: 226 DTEFVEVIA--------FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFM 277
           D +              F  + N  +   +  F   L   S ++ +   E    +W+ + 
Sbjct: 61  DVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSL-EHSELRWVSYE 119

Query: 278 EFVKQPLIQGDCMFKKVIDICIARLRKR 305
             ++      +   K  +     RL+  
Sbjct: 120 SAIQLLEWDSN---KTALYELNERLKNN 144

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
                 +I   + VLV   +       G + LP G  +  E   +  +RE++EETG+   
Sbjct: 16  ARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGELRSQALIREIREETGLRIN 69

Query: 229 FVE-VIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 275
            +  +       N         ++C+      + K  + EI+    + 
Sbjct: 70  SMLYLFDHITPFNAHK-----VYLCI---AQGQPKPQN-EIERIALVS 108

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
           V   ++ D+++VL++Q+        G W  P G ++  E I +   RE  EETG+  +  
Sbjct: 6   VTNCIVVDHDQVLLLQKP-----RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNP 60

Query: 231 EVIA-----FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 285
           E+             +  +     F         E+     E K  +W    E ++ P+ 
Sbjct: 61  ELKGIFSMVIFDEGKIVSEWMLFTFKA--TEHEGEMLKQSPEGK-LEWKKKDEVLELPMA 117

Query: 286 QGD 288
            GD
Sbjct: 118 AGD 120

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 173 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV 232
           G +    N+VL+ +     P   G W LP GF++ +E + +GA RE  EE     E  E+
Sbjct: 44  GCIPEWENKVLLCKRAI-APY-RGKWTLPAGFMENNETLVQGAARETLEEANARVEIREL 101

Query: 233 IA---FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 278
            A     H   V      + F   L  L  +      E    +     E
Sbjct: 102 YAVYSLPHISQV-----YMLFRAKL--LDLDFFPGI-ESLEVRLFGEQE 142

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 63.9 bits (155), Expect = 1e-11
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 16/180 (8%)

Query: 118 IWLKLPLENAELVPIAVKEGFKYHHAEPEY----LMLTYWIPDGPCVLPGNATHQVGVGG 173
            +     +  + VP A+ +  +       Y        +                     
Sbjct: 148 YFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTD 207

Query: 174 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 233
            V+     VL+V+ +       GL  LP GFI ++E + +G +RE+KEET +      + 
Sbjct: 208 AVVVQAGHVLMVRRQ--AKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLR 265

Query: 234 AFRHAHNVAFQKSD---------LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284
                 +V F               +   L            + + A WM   +   Q  
Sbjct: 266 GSIVDSHV-FDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEE 324

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 223
           NA  Q  +   +I ++   L+ +       F G W L  G ++  E I +   RE++EE 
Sbjct: 23  NAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREEL 82

Query: 224 GVDTE-----------FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAK 272
           G                + +  +            L F C     + +I ++D E +   
Sbjct: 83  GEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDC--VSANRDICIND-EFQDYA 139

Query: 273 WMPFMEFVKQPLIQGD 288
           W+   E     L    
Sbjct: 140 WVKPEELALYDLNVAT 155

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
            ++     V +   + ++V++K  N  +      P G ++  E     A+REV EETG+ 
Sbjct: 9   VELVTMVMVTDPETQRVLVEDKV-NVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLR 67

Query: 227 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286
              V         +   Q   L  +      +  +K    E +   W+P     ++    
Sbjct: 68  LSGVTFCGTCEWFDDDRQHRKLGLLYRASNFTGTLKASA-EGQ-LSWLPITALTRENSAA 125

Query: 287 GD 288
             
Sbjct: 126 SL 127

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
            +     F      EVL+V     +      W +P G ++  EE    AVREV EE GV 
Sbjct: 41  KRAACLCFRSESEEEVLLVS----SSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVK 96

Query: 227 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 278
                ++          +     ++ ++  +  + +      +  +W    +
Sbjct: 97  GTLGRLVGIFENQERKHRT--YVYVLIVTEVLEDWEDSVNIGRKREWFKIED 146

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 15/116 (12%)

Query: 171 VGGFVINDNN---EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
            G  +        E L++Q  Y        W  P G +D  E+ ++ A+RE KEE  +  
Sbjct: 6   AGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITK 61

Query: 228 EFVEVIA-----FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 278
           E + +         +      +    +     K  + +      E +  KW    +
Sbjct: 62  EQLTIHEDCHETLFYEAKGKPKSVKYWL---AKLNNPDDVQLSHEHQNWKWCELED 114

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 56.9 bits (137), Expect = 4e-10
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 29/134 (21%)

Query: 164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 223
           +      V  F++  + +VL+   K      A       G I+ +E   +  +RE KEE 
Sbjct: 2   SLNRHFTVSVFIVCKD-KVLLHLHKK-----AKKMLPLGGHIEVNELPEEACIREAKEEA 55

Query: 224 GVDTEFVE---------------------VIAFRHAHNVAFQKSDLFFICMLKPLSTEIK 262
           G++                          +       +      D  +       S E  
Sbjct: 56  GLNVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYA--TTTSFETS 113

Query: 263 VDDLEIKGAKWMPF 276
            +  E K  KW   
Sbjct: 114 PEIGESKILKWYSK 127

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 6/135 (4%)

Query: 155 PDGPCVLPGN-ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK 213
             G      +    ++     V+     VL+  +K      AG W    G + E E I  
Sbjct: 11  SSGLVPRGSHMGASRLYTLVLVLQPQ-RVLLGMKK--RGFGAGRWNGFGGKVQEGETIED 67

Query: 214 GAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKW 273
           GA RE++EE+G+  + +  +       V   +     +     +       + +     W
Sbjct: 68  GARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPV--ESDEMRPCW 125

Query: 274 MPFMEFVKQPLIQGD 288
               +   + +   D
Sbjct: 126 FQLDQIPFKDMWPDD 140

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 15/116 (12%), Positives = 41/116 (35%), Gaps = 5/116 (4%)

Query: 174 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 233
            + +   + +V+Q +         +  P G ++  E   +  +RE+ EETG+  +  +++
Sbjct: 14  LIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLV 73

Query: 234 AFRHAHNVAFQKSDLF-FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 288
             ++       +  +  +       S  ++    E     W+   +     L    
Sbjct: 74  GIKNWPLDTGGRYIVICYKA--TEFSGTLQ--SSEEGEVSWVQKDQIPNLNLAYDM 125

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 58.3 bits (140), Expect = 9e-10
 Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 28/152 (18%)

Query: 153 WIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF 212
           W       +  +             D+ EV +V            W  P G ++++E   
Sbjct: 11  WRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPK-----YDDWSWPKGKLEQNETHR 65

Query: 213 KGAVREVKEETGVDTEFVEVIA-------------FRHAHNVAFQKSDLFFI-------- 251
             AVRE+ EETG   +    +                     A  K  L+++        
Sbjct: 66  HAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADD 125

Query: 252 --CMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
              +L       + D  EI    W+   E  K
Sbjct: 126 AEHLLDAFGPVHRADVGEINDIVWVSVREARK 157

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 135 KEGFKYHHAEPEYLMLTY--WIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNP 192
           K  ++   +  E+L   +   +P+     P      V +      D  +VL++Q K    
Sbjct: 11  KNYYERQASLAEFLTWYHQQELPEYEK--PSLTVDMVLLCYNKEADQLKVLLIQRK--GH 66

Query: 193 AFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR 236
            F   W LP GF++ +E      +RE KEETGV      +    
Sbjct: 67  PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH 110

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V +   +   + + +++ ++  +P     W+  TG ++E E   + A+REVKEE  +D  
Sbjct: 10  VSILVVIYAQDTKRVLMLQRRDDP---DFWQSVTGSVEEGETAPQAAMREVKEEVTIDVV 66

Query: 229 FVEVIAFRHAHNVAF 243
             ++        V F
Sbjct: 67  AEQLTLIDCQRTVEF 81

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 155 PDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKG 214
             GP  +P  ++  + V   +++ +N VL+ Q      + AGLW+ P G +++ E     
Sbjct: 16  TQGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPE-GKSLAGLWEFPGGKVEQGETPEAS 74

Query: 215 AVREVKEETGVDT---EFVEVIAFRHA 238
            +RE++EE GV         +    H 
Sbjct: 75  LIRELEEELGVHVQADNLFPLTFASHG 101

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 169 VGVG----GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 224
           +        +   +   +++++ KY  P       LP GF++  E + + A RE++EETG
Sbjct: 10  LATDVIIRLWDGENFKGIVLIERKY-PP---VGLALPGGFVEVGERVEEAAAREMREETG 65

Query: 225 VDTEFVEVIA 234
           ++    +++ 
Sbjct: 66  LEVRLHKLMG 75

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 50.2 bits (121), Expect = 9e-08
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
            VG  + N   +V+  +      +    W+ P G I+  E   +   RE+ EE G+  + 
Sbjct: 10  NVGIVICNRQGQVMWARRFG-QHS----WQFPQGGINPGESAEQAMYRELFEEVGLSRKD 64

Query: 230 VEVIA 234
           V ++A
Sbjct: 65  VRILA 69

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 181 EVLVVQEKYCNPAFAGLWKLPTGFIDES--EEIFKGAVREVKEETGVDTEFVEVIAFRHA 238
           +VL+VQ    N  F GLW LP GFIDE+  E + +  +R++ E+T V   ++E +     
Sbjct: 38  KVLLVQRS--NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGN 95

Query: 239 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 298
           ++   +   +             ++    +   KW P  + ++ PL        ++I+  
Sbjct: 96  NSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHL---QLIEQA 152

Query: 299 IARLRKRYC 307
             RL ++  
Sbjct: 153 RERLTQKAL 161

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
            VG  ++N++ ++     +   P     W++P G IDE E+    A+RE++EETGV +  
Sbjct: 16  NVGICLMNNDKKIFAAS-RLDIPDA---WQMPQGGIDEGEDPRNAAIRELREETGVTS-- 69

Query: 230 VEVIA 234
            EVIA
Sbjct: 70  AEVIA 74

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 154 IPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK 213
           +            H + V    +  + ++LV Q    N + AG W+ P G I+  E   +
Sbjct: 7   VESKQKKSKIRKGHWIPVVAGFLRKDGKILVGQRPE-NNSLAGQWEFPGGKIENGETPEE 65

Query: 214 GAVREVKEETGVDTEFVEVIAF-RHA 238
              RE+ EE G++ E  E+     H+
Sbjct: 66  ALARELNEELGIEAEVGELKLACTHS 91

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
             G + N+NNE+ + +    +   A   + P G I+  E   +  VRE++EE G+  +  
Sbjct: 7   AVGIIRNENNEIFITRRAA-DAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65

Query: 231 EVIAFRHAHNVAFQKSDL-FFIC 252
            +      +    +   L F++ 
Sbjct: 66  SLFEKLE-YEFPDRHITLWFWLV 87

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
               +I+ +  VL+ Q      + AGLW+ P G ++  E      VRE+ EE GVDT 
Sbjct: 11  TAAALIDPDGRVLLAQRPP-GKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTR 67

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 162 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKE 221
           P  +   + V   +I  + ++L+ Q        AGLW+   G ++  E   +  VRE++E
Sbjct: 2   PLGSMKMIEVVAAIIERDGKILLAQRPA-QSDQAGLWEFAGGKVEPDESQRQALVRELRE 60

Query: 222 ETGVDTEFVEVIAF 235
           E G++    E +A 
Sbjct: 61  ELGIEATVGEYVAS 74

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 28/225 (12%), Positives = 55/225 (24%), Gaps = 28/225 (12%)

Query: 76  DFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 135
             FD   D V++        P +    +   +                    EL  +   
Sbjct: 46  RVFDVTRDAVLLSAS--LRTPQSRTRAVADVVDRLADEGVVPAPRG------ELYRVNQS 97

Query: 136 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEK-YCNPAF 194
            G                +        G   + V + G+V    +  L +  +       
Sbjct: 98  WGEP----------TLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVA 147

Query: 195 AGLW-KLPTGFIDESEEIFKGAVREVKEETGVDTEFVE------VIAFRHAHNVAFQKSD 247
            G    +  G       + +  ++E  EE  +             I +        +   
Sbjct: 148 PGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDT 207

Query: 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFK 292
           LF   +  P        D E+      P  + V + +   +  FK
Sbjct: 208 LFLYDLALPEDFRPHNTDGEMADFMLWPAAK-VVEAVRTTE-AFK 250

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
           H+  V    + +   + V Q            ++P G I+  E+  + A RE+ E+TG+ 
Sbjct: 33  HKPAVAVIALREGRMLFVRQ--MRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 90

Query: 227 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
            +   + ++  +     +K+ +F    LK    E   D+ E     WM   E ++
Sbjct: 91  GDLTYLFSYFVSPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALE 143

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
           ++  V    I D++ +L+ +  Y     +       G ID  E +++ A RE+KEE G  
Sbjct: 48  NREAVMIVPIVDDHLILIRE--YAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFG 105

Query: 227 TEFVEVIAFRHAHNVAF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
              +  +        ++   K ++     L P    ++ D+ E       P    + 
Sbjct: 106 ANDLTFLKKLSM-APSYFSSKMNIVVAQDLYP--ESLEGDEPEPLPQVRWPLAHMMD 159

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
               V    +    E +++++ +  P  A + ++  G +++ E++   A RE+ EE G  
Sbjct: 4   GPRAVFILPVTAQGEAVLIRQ-FRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGA 62

Query: 227 TEFVEVIAFRHAHNVAF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
                 +   +    +             +       +++D E      +P  E  +
Sbjct: 63  ASEWVPLPGFYP-QPSISGVVFYPLLALGVTL--GAAQLEDTETIERVVLPLAEVYR 116

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 167 HQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 223
               V    +    +    L+V++ Y +P    L ++P G +DE E     A RE++EE 
Sbjct: 37  RPGPVAASFVLPVTERGTALLVRQ-YRHPTGKFLLEVPAGKVDEGETPEAAARRELREEV 95

Query: 224 GVDTEFVEVIAFRHAHNVAF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
           G + E +  +   H    +F       F     + ++    +++ E+  +  +P  E   
Sbjct: 96  GAEAETLIPLPSFHP-QPSFTAVVFHPFLALKARVVT-PPTLEEGELLESLELPLTEVYA 153

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 8/112 (7%)

Query: 174 FVINDNNEVLVVQ---EKYCNPAFAGLWKLPT-GFIDESEEIFKGAVREVKEETGVDTEF 229
           F+ N   ++ + +    K   P       +   G +   E   +   RE +EE  V+ + 
Sbjct: 40  FLRNSQGQLWIPRRSPSKSLFP---NALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 96

Query: 230 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
           +               S    +  L+  +     +  +I G +W+     + 
Sbjct: 97  LSWRPLASFSPFQTTLSSFMCVYELRSDA-TPIFNPNDISGGEWLTPEHLLA 147

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 45.4 bits (107), Expect = 9e-06
 Identities = 17/135 (12%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 175 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 234
                  +L+++         G W L  GF+ + E +   A R + E TG++  ++E + 
Sbjct: 23  FNEGEISLLLLKRN--FEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVG 80

Query: 235 FRHAHNVAFQKSDL--FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFK 292
              A +    +  +   +  ++     + ++            ++   + P +  D    
Sbjct: 81  AFGAIDRDPGERVVSIAYYALININEYDRELVQ-----KHNAYWVNINELPALIFD--HP 133

Query: 293 KVIDICIARLRKRYC 307
           +++D     ++++  
Sbjct: 134 EMVDKAREMMKQKAS 148

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 166 THQVGVGGFVINDNNEVLVVQEKYCNPA-FAGLWKLPTGFIDESEEIFKGAVREVKEETG 224
           + +V     VI    + L VQ      +  +  ++ P G ++E E + +   RE+ EE  
Sbjct: 5   SIEVVAA--VIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMD 62

Query: 225 VDTEFVEVIAFRH 237
              E  E +   H
Sbjct: 63  YVIEVGEKLLTVH 75

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGV 225
           H   V    ++DN  + +V + Y +     LW+LP G +D + E     A RE++EE G+
Sbjct: 42  HFGAVAIVAMDDNGNIPMVYQ-YRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGL 100

Query: 226 DTEFVEVIAFRHAHNVAF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
                +V+         F  +   ++    L+ +       +       W P  E  +
Sbjct: 101 QASTWQVLVDLDT-APGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAAR 157

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 177 NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 233
                +++V++ +  P      + P G ID+ E     A+RE++EETG   +  E  
Sbjct: 74  LHYECIVLVKQ-FRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECS 129

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 23/116 (19%)

Query: 176 INDNNEVLVVQEKYCNPAF-AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 234
           I  ++ +L+ Q    +     G+  +  GF++  E + +   REV EE+G+         
Sbjct: 147 IRRDDSILLAQ----HTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKV------- 195

Query: 235 FRHAHNVAFQKS-------DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 283
                N+ +  S        L    M +  S +I +D  E+  A W  + +    P
Sbjct: 196 ----KNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLP 247

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 16/109 (14%)

Query: 174 FVINDNNEVLVVQ---EKYCNPAFAGLWKLPT-GFIDESEEIFKGAVREVKEETGVDT-- 227
            V +   ++LV +    K   P   G+      G +   E++ + A RE +EE G+    
Sbjct: 43  VVHDGMGKILVQRRTETKDFLP---GMLDATAGGVVQADEQLLESARREAEEELGIAGVP 99

Query: 228 -EFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 275
                   F   +   +    LF      P      + + E+    W+ 
Sbjct: 100 FAEHGQFYFEDKNCRVW--GALFSCVSHGPF----ALQEDEVSEVCWLT 142

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A Length = 217

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 12/102 (11%)

Query: 190 CNPAFAGLWKLPTGFIDESEEIFK-GAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248
               F G    P GF+D  +   + G  RE++EE G       V    +  +       +
Sbjct: 69  MQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRV 128

Query: 249 ---FFICMLKP--------LSTEIKVDDLEIKGAKWMPFMEF 279
              F+   L           +T  K   LE+ G   +P    
Sbjct: 129 VAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTL 170

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 181 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           + + ++ K C       W +P G +D  E+I     RE  EE     +
Sbjct: 140 QFVAIKRKDCGE-----WAIPGGMVDPGEKISATLKREFGEEALNSLQ 182

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 13/129 (10%)

Query: 159 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPT-GFIDESEEIFKGAVR 217
                   H      ++ N   ++LV +      A+ G+W     G     E      +R
Sbjct: 24  AHTADTRLHLA-FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIR 82

Query: 218 EVKEETGVDTEFVEVIAFRHAHNVAFQK-------SDLFFICMLKPLSTEIKVDDLEIKG 270
             + E GV+    E I     +               +F       L    +++D E+  
Sbjct: 83  RCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSAL----QINDDEVMD 138

Query: 271 AKWMPFMEF 279
            +W    + 
Sbjct: 139 YQWCDLADV 147

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 194 FAGLWKLPTGFIDESEEIFK-GAVREVKEETGVDTEFVEV 232
           F G    P GF+D  +   + G  RE++EE G     VEV
Sbjct: 64  FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEV 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.91
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.9
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	99.9
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.86
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.85
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.85
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.85
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.84
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.83
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.82
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.82
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.82
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.82
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.82
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.82
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.82
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.82
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.81
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.81
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.81
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.81
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.81
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.81
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.81
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.81
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.81
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.81
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.8
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.8
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.8
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.8
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.8
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.8
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.79
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.79
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.79
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.79
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.78
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.78
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.78
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.78
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.78
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.78
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.77
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.77
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.77
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.76
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.76
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.76
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.76
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.76
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.76
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.75
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.75
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.75
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.75
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.74
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.74
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.74
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.74
3f13_A	163	Putative nudix hydrolase family member; structural	99.73
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.72
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.7
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.68
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.68
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.66
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.64
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.6
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.6
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.6
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.54
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.51
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.51
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.36
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.35
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.24
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.89
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.8

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.91  E-value=7.9e-24  Score=192.29  Aligned_cols=165  Identities=17%  Similarity=0.257  Sum_probs=130.3

Q ss_pred             CCCCCcceeEEEEEEE---eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 019517          161 LPGNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH  237 (340)
Q Consensus       161 lp~~~~~~v~V~~lv~---~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~  237 (340)
                      .+.++.+.++|+++|+   +++++|||++|..  .+..|.|.+|||++++||++.+||+||++||||+.+..++.++.+.
T Consensus         6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~--~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~   83 (226)
T 2fb1_A            6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNF--EPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG   83 (226)
T ss_dssp             TTTSCCEEEEEEEEEEEEETTEEEEEEEECSS--SSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEEC
T ss_pred             cccCCCCeEEEEEEEEEEeCCCCEEEEEECcC--CCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeC
Confidence            4556667788998888   4568999999964  2457899999999999999999999999999999999888887665


Q ss_pred             ecc-CCCc-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc--cCCCCCCc
Q 019517          238 AHN-VAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQ  313 (340)
Q Consensus       238 ~~~-~~~~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~--y~g~~~~~  313 (340)
                      ... ...+ ...++|++...  ......+++|+.+++|++++++.++.+.   +  +.+++.++++++.+  |.++.+..
T Consensus        84 ~~~r~~~~~~v~~~y~a~~~--~~~~~~~~~e~~~~~W~~~~el~~l~~d---h--~~il~~a~~rlr~~~~y~~i~~~l  156 (226)
T 2fb1_A           84 AIDRDPGERVVSIAYYALIN--INEYDRELVQKHNAYWVNINELPALIFD---H--PEMVDKAREMMKQKASVEPIGFNL  156 (226)
T ss_dssp             CTTSSSSSCEEEEEEEEECC--TTSSCHHHHHHTTEEEEETTSCCCBSTT---H--HHHHHHHHHHHHHHHHHSGGGGGG
T ss_pred             CCCcCCCceEEEEEEEEEec--CcccccCCccccceEEEEHHHhhhccCC---H--HHHHHHHHHHHHhhcccCchHHHh
Confidence            332 2222 33445666643  2222234578889999999999987653   3  68899999988876  89999999


Q ss_pred             Ccccc-hhhhhhhhhhhcCCCC
Q 019517          314 LVSAF-DGQTSSLYYNDSDTQD  334 (340)
Q Consensus       314 l~~~f-~~~~~~ly~~~~~~~~  334 (340)
                      +|.+| ..+++.+|+.+++.+.
T Consensus       157 lp~~ftl~~l~~~ye~~~~~~~  178 (226)
T 2fb1_A          157 LPKLFTLSQLQSLYEAIYGEPM  178 (226)
T ss_dssp             SCSEEEHHHHHHHHHHHHTSCC
T ss_pred             CCccccHHHHHHHHHHHhCCCC
Confidence            99999 9999999999998765

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.90  E-value=2e-23  Score=191.35  Aligned_cols=165  Identities=21%  Similarity=0.344  Sum_probs=127.9

Q ss_pred             CCCcceeEEEEEEE---eCCceEEEEEeccCCCCCCCceEcceeeecC--CCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 019517          163 GNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDE--SEEIFKGAVREVKEETGVDTEFVEVIAFRH  237 (340)
Q Consensus       163 ~~~~~~v~V~~lv~---~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~--GEs~~eAAiREv~EETGi~~~~~~~l~~~~  237 (340)
                      .+..+.++|+++|+   +++++|||++|..  .+..|.|.+|||++++  ||++.+||+||++||||+++..+++++.+.
T Consensus        17 ~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~--~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~   94 (240)
T 3gz5_A           17 AFKAQLLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVG   94 (240)
T ss_dssp             ----CEEEEEEEEEEEETTEEEEEEEECCS--SSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEE
T ss_pred             ccCCCccEEEEEEEEEeCCCcEEEEEECcC--CCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeC
Confidence            34455678888887   3457999999863  3467899999999999  999999999999999999998888887655


Q ss_pred             eccC-CCc-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc--cCCCCCCc
Q 019517          238 AHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQ  313 (340)
Q Consensus       238 ~~~~-~~~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~--y~g~~~~~  313 (340)
                      .... ..+ ...++|++...  ........+|+.+++|++++++...++.++ +  +.+++.++++++.+  |.++.+..
T Consensus        95 ~~~r~~~~~~~~~~y~a~~~--~~~~~~~~~e~~~~~W~~~~el~~~~l~~d-h--~~il~~a~~rlr~kl~y~~i~~~l  169 (240)
T 3gz5_A           95 NNSRDARGWSVTVCYTALMS--YQACQIQIASVSDVKWWPLADVLQMPLAFD-H--LQLIEQARERLTQKALYSLVPGFA  169 (240)
T ss_dssp             ESSSSTTSCEEEEEEEEECC--HHHHHHHHTTCTTEEEEEHHHHTTSCCSTT-H--HHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred             CCccCCCceEEEEEEEEEec--ccccCCCCCcccceEEecHHHcccCCcchh-H--HHHHHHHHHHHHHhcccCcHHHHh
Confidence            4322 222 34455665542  222333457888999999999987666663 4  89999999999886  99999999


Q ss_pred             Ccccc-hhhhhhhhhhhcCCCC
Q 019517          314 LVSAF-DGQTSSLYYNDSDTQD  334 (340)
Q Consensus       314 l~~~f-~~~~~~ly~~~~~~~~  334 (340)
                      +|.+| ..+++.+|+.++|++.
T Consensus       170 lp~~Ftl~~l~~~ye~i~g~~~  191 (240)
T 3gz5_A          170 LSEPFTLPELQHVHEVLLGKPI  191 (240)
T ss_dssp             SCSSBCHHHHHHHHHHHHTSCC
T ss_pred             CCCCccHHHHHHHHHHHcCCcC
Confidence            99999 9999999999999764

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.2e-24  Score=174.67  Aligned_cols=95  Identities=27%  Similarity=0.503  Sum_probs=82.2

Q ss_pred             eeeeecccceeecccCCCCcEEEcCCC----CCCChhHHHHHHHHHHHHHHhcCceeEEEecCCccccchHHHHhccccc
Q 019517           65 SSIFSRNLRVLDFFDDEYDGVVVDPKR----LPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKY  140 (340)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~~g~~v~~~~----~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~l~~~~~~l~~~a~~~~f~~  140 (340)
                      -+...+++.+|+|..|+||||+|++++    .+.|+++|...|+.+|+.||.+++++||++||+.+++++++|++.||.|
T Consensus        15 ~~~~~~~~~~l~g~~DrygGV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlklpi~~s~lIp~a~~~GF~f   94 (113)
T 3fxt_A           15 TENLYFQSMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCF   94 (113)
T ss_dssp             ------CCCCCCCEECTTSCEEEEHHHHTTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGGGHHHHHHTTCEE
T ss_pred             ccccccccccccCCccCcCCEEEeCCccCCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEcCHHHhhhHHHHHHcCcee
Confidence            456677889999999999999999754    2559999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccccccccCCCC
Q 019517          141 HHAEPEYLMLTYWIPDGPC  159 (340)
Q Consensus       141 h~~~~~y~~l~~w~~~~~~  159 (340)
                      |||+++|+||++|+|+.|+
T Consensus        95 HHAe~dylmL~~WLpe~ps  113 (113)
T 3fxt_A           95 HHAESDSSTLTLWLREGPS  113 (113)
T ss_dssp             EEEEBTEEEEEEECCC---
T ss_pred             ecCCCCeEEEEEecCcCCC
Confidence            9999999999999998763

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.86  E-value=1.1e-20  Score=176.18  Aligned_cols=164  Identities=19%  Similarity=0.251  Sum_probs=123.2

Q ss_pred             CCCCCCcceeEEEEEEEe--C---CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcce--eeEE
Q 019517          160 VLPGNATHQVGVGGFVIN--D---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEV  232 (340)
Q Consensus       160 ~lp~~~~~~v~V~~lv~~--~---~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~--~~~~  232 (340)
                      .++.+..+.++|+++|+.  +   +++|||++|...  +..|.|.+|||++++||++.+||+||++||||+.+.  .+..
T Consensus        31 ~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~  108 (273)
T 2fml_A           31 ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ  108 (273)
T ss_dssp             CCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred             hcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEE
Confidence            345566777888888875  2   358999999643  357899999999999999999999999999997654  4555


Q ss_pred             EEEEeecc-CCC-ceEEEEEEEEEecCCCcccCCcCceeeEEEEecccccc-----------------------CCCCCC
Q 019517          233 IAFRHAHN-VAF-QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK-----------------------QPLIQG  287 (340)
Q Consensus       233 l~~~~~~~-~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~-----------------------~~~~~~  287 (340)
                      ++.+.... ... ....++|++....  .. ...++|..+++|++++++.+                       .++.+ 
T Consensus       109 l~~~~~~~r~~~~~~~~~~y~a~~~~--~~-~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~Laf-  184 (273)
T 2fml_A          109 LHSFSRPDRDPRGWVVTVSYLAFIGE--EP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAF-  184 (273)
T ss_dssp             EEEECCTTSSTTSSEEEEEEEEECCC--CC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCST-
T ss_pred             EEEEcCCCCCCCceEEEEEEEEEeCC--CC-CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccc-
Confidence            55443222 111 2345666666532  22 34567899999999997432                       23444 


Q ss_pred             CchHHHHHHHHHHHHhcc--cCCCCCCcCcccc-hhhhhhhhhhhcC
Q 019517          288 DCMFKKVIDICIARLRKR--YCGLYPHQLVSAF-DGQTSSLYYNDSD  331 (340)
Q Consensus       288 ~~~~~~il~~~l~~l~~~--y~g~~~~~l~~~f-~~~~~~ly~~~~~  331 (340)
                      +|  +.|+..++++++.+  |.++.+..||.+| ..+++.+|+.++|
T Consensus       185 dH--~~Il~~al~rlr~kl~y~~i~~~llp~~FTl~~l~~~ye~i~g  229 (273)
T 2fml_A          185 DH--SEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLG  229 (273)
T ss_dssp             TH--HHHHHHHHHHHHHHTTTCCGGGGGGCSCBCHHHHHHHHHHHHT
T ss_pred             cH--HHHHHHHHHHHHHHhcCCcHHHHhCCccccHHHHHHHHHHHhC
Confidence            44  78999999999886  9999999999999 9999999999998

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.85  E-value=3.4e-21  Score=171.03  Aligned_cols=142  Identities=35%  Similarity=0.586  Sum_probs=99.9

Q ss_pred             CCCCCCCcceeEEEEEEEeC-CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 019517          159 CVLPGNATHQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH  237 (340)
Q Consensus       159 ~~lp~~~~~~v~V~~lv~~~-~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~  237 (340)
                      +..+.++.+.++|++++++. +++|||++++.   ...|.|.+|||++++||++.+||+||++||||+.+....++++..
T Consensus        17 ~~~~~~~~~~v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~   93 (199)
T 3h95_A           17 NLYFQSMSHQVGVAGAVFDESTRKILVVQDRN---KLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQ   93 (199)
T ss_dssp             ---------CCEEEEEEEETTTTEEEEEEESS---SSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred             ccccccCcccceEEEEEEeCCCCEEEEEEEcC---CCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEe
Confidence            34556677889998888885 58999999863   247899999999999999999999999999999998777777543


Q ss_pred             ecc--CCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517          238 AHN--VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       238 ~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~  305 (340)
                      ...  .......++|++..........++++|+.+++|++++++.++.....  +.+.++..++...+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~--~~~~~~~~~~~~~~~~  161 (199)
T 3h95_A           94 QHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTP--ITSRVARLLLYGYREG  161 (199)
T ss_dssp             CC---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCH--HHHHHHHHHHHHHHHC
T ss_pred             eecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcCh--HHHHHHHHHHhhhhcC
Confidence            222  22334557778877655556667789999999999999998865433  5566666665544444

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.85  E-value=7e-21  Score=158.87  Aligned_cols=123  Identities=28%  Similarity=0.407  Sum_probs=90.3

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc---
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ---  244 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~---  244 (340)
                      .++++++|++ +++|||++|.      .|.|.+|||++|+||++.+||+||++||||+.+....+++.........+   
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~------~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~   76 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTP------SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERI   76 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECT------TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEE
T ss_pred             EEEEEEEEEE-CCEEEEEEeC------CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceE
Confidence            3678888886 4799999874      46899999999999999999999999999999988887765433222222   


Q ss_pred             -eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517          245 -KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  303 (340)
Q Consensus       245 -~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~  303 (340)
                       ...++|+|...  ++++.+ ++|+.+++|++++|+.++...+   -.+.+++.++..+.
T Consensus        77 ~~~~~~f~~~~~--~~~~~~-~~E~~~~~W~~~~e~~~~l~~~---~~r~il~~a~~l~~  130 (134)
T 3i7u_A           77 FKTVKYYLMKYK--EGEPRP-SWEVKDAKFFPIKEAKKLLKYK---GDKEIFEKALKLKE  130 (134)
T ss_dssp             EEEEEEEEEEEE--EECCCC-CTTSSEEEEEEHHHHHHHBCSH---HHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEEc--CCcCcC-ChhheEEEEEEHHHHhhhcCCh---HHHHHHHHHHHHHH
Confidence             23345666543  344444 3789999999999998875433   23778887775543

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=2.9e-20  Score=157.32  Aligned_cols=131  Identities=19%  Similarity=0.288  Sum_probs=100.4

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      ..++|++++++.+++|||++|....+..+|.|.+|||++++||++.+||+||++||||+.+....+++............
T Consensus         7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~   86 (153)
T 3grn_A            7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVI   86 (153)
T ss_dssp             EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEE
T ss_pred             eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEE
Confidence            45778889998889999999975446678999999999999999999999999999999998887777665444443344


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC-CCCCCchHHHHHHHHHHHHh
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP-LIQGDCMFKKVIDICIARLR  303 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~-~~~~~~~~~~il~~~l~~l~  303 (340)
                      ..+|.+..  ..+.+.. .+|+.+++|++++++.+++ ++.   ..+.+++.+.+...
T Consensus        87 ~~~~~~~~--~~~~~~~-~~e~~~~~W~~~~el~~~~~~~~---~~~~~l~~l~~~~~  138 (153)
T 3grn_A           87 AIVFDGGY--VVADVKL-SYEHIEYSWVSLEKILGMETLPA---YFRDFFERFDRENK  138 (153)
T ss_dssp             EEEEEEEE--CCCCCCC-CTTEEEEEEECHHHHTTCSSSCH---HHHHHHHHHHHHHT
T ss_pred             EEEEEEEe--cCCcEec-CCCcceEEEEEHHHhhhcccchH---HHHHHHHHHhcccc
Confidence            45555544  2344433 4788999999999999988 543   45777777665443

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.84  E-value=1.1e-19  Score=154.11  Aligned_cols=134  Identities=21%  Similarity=0.259  Sum_probs=100.1

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      ....|++++++.+++|||++|...  .+.|.|.+|||++++||++.+||+||++||||+++....+++.....   ....
T Consensus        19 ~~~~v~~~i~~~~~~vLl~~r~~~--~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~~~   93 (156)
T 3gg6_A           19 VCYVVLAVFLSEQDEVLLIQEAKR--ECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG---PSWV   93 (156)
T ss_dssp             CEEEEEEECBCTTSEEEEEECCCT--TSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TTEE
T ss_pred             eEEEEEEEEEeCCCEEEEEEecCC--CCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CCEE
Confidence            345577788888899999999732  26899999999999999999999999999999999988888766532   2345


Q ss_pred             EEEEEEEEecCCCc-ccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcccCC
Q 019517          247 DLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG  308 (340)
Q Consensus       247 ~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y~g  308 (340)
                      .++|++........ ...+++|+.+++|++++++.++....   -++.++..+...++++..+
T Consensus        94 ~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~~~~~~~p  153 (156)
T 3gg6_A           94 RFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAH---DILHLVELAAQYRQQARHP  153 (156)
T ss_dssp             EEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCT---HHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccch---hHHHHHHHHHHHhhcCCCc
Confidence            56677765322211 12355789999999999999865533   3567777777777665433

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.83  E-value=1.2e-19  Score=155.40  Aligned_cols=127  Identities=17%  Similarity=0.246  Sum_probs=84.2

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----eccC
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----AHNV  241 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~-----~~~~  241 (340)
                      ....+.+++++.+++|||++|....+..+|.|.+|||++++||++.+||+||++||||+.+....++....     .+..
T Consensus        26 ~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  105 (165)
T 3oga_A           26 RQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTY  105 (165)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC
T ss_pred             ceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEec
Confidence            33455566666779999999976555678999999999999999999999999999999988776654321     1111


Q ss_pred             CCc----eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHH
Q 019517          242 AFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI  297 (340)
Q Consensus       242 ~~~----~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~  297 (340)
                      ...    ...+++++.+....+.+.. ++|+.+++|++++++.++++.+.   .+.+++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~  161 (165)
T 3oga_A          106 ADGRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALYDLNVA---TRHTLAL  161 (165)
T ss_dssp             --CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGSCBCHH---HHHHHHH
T ss_pred             CCCCceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhCCCCHH---HHHHHHH
Confidence            111    1222333333333444433 47899999999999999987654   3455543

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.82  E-value=1.6e-19  Score=150.59  Aligned_cols=123  Identities=19%  Similarity=0.175  Sum_probs=90.5

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCC--CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPA--FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~--~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      ..|++++.+ +++|||++|.. .+.  .+|.|.+|||++++||++.+||+||++||||+.+....+++............
T Consensus         7 ~~v~~vi~~-~~~vLL~~r~~-~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~   84 (140)
T 3gwy_A            7 EVVAAVIRL-GEKYLCVQRGQ-TKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEIT   84 (140)
T ss_dssp             EEEEEEEEE-TTEEEEEEC----------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEE
T ss_pred             EEEEEEEEe-CCEEEEEEecC-CCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEE
Confidence            445666666 78999999973 333  68999999999999999999999999999999999888887765544444455


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                      ..+|.+...  .+.  ++..|+.+++|++++++.++++.+.   .+.+++.+.+
T Consensus        85 ~~~f~~~~~--~~~--~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~  131 (140)
T 3gwy_A           85 MHAFLCHPV--GQR--YVLKEHIAAQWLSTREMAILDWAEA---DKPIVRKISE  131 (140)
T ss_dssp             EEEEEEEEC--CSC--CCCCSSCEEEEECHHHHTTSCBCGG---GHHHHHHHHC
T ss_pred             EEEEEEEec--CCc--ccccccceeEeccHHHHhhCCCCcc---cHHHHHHHHh
Confidence            566666653  233  3456889999999999999988765   3566665543

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.82  E-value=2e-20  Score=157.49  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=81.0

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      ..+|++++++.+++|||+++. +.+.+.+.|++|||++|+||++.+||+||++||||+++..+..++.....+.......
T Consensus         5 ~~~v~vi~~~~~~~vLLv~~~-r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~   83 (145)
T 2w4e_A            5 PRAVFILPVTAQGEAVLIRQF-RYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVF   83 (145)
T ss_dssp             CEEEEEEEEETTSEEEEEEEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEE
T ss_pred             CCEEEEEEEcCCCEEEEEEEE-ecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceE
Confidence            367888999989999998765 3333566899999999999999999999999999999987777664433333333444


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      ++|++.... .+....+++|+.+++|++++++.++..
T Consensus        84 ~~f~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~~  119 (145)
T 2w4e_A           84 YPLLALGVT-LGAAQLEDTETIERVVLPLAEVYRMLE  119 (145)
T ss_dssp             EEEEEEEEE-EC--------CEEEEEEEHHHHHHHHH
T ss_pred             EEEEEEecc-cCCCCCCCCCeEEEEEEeHHHHHHHHH
Confidence            556555322 223445678899999999999987644

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.82  E-value=9.2e-20  Score=155.45  Aligned_cols=121  Identities=21%  Similarity=0.365  Sum_probs=87.1

Q ss_pred             CCCCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE
Q 019517          157 GPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR  236 (340)
Q Consensus       157 ~~~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~  236 (340)
                      .+..++....++++|++++++ +++|||++|... + ..|.|.+|||++++||++.+||+||++||||+.+....+++..
T Consensus        18 ~p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~-~-~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~   94 (157)
T 4dyw_A           18 GPGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRA-P-EAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVV   94 (157)
T ss_dssp             --------CCCEEEEEEEEEE-TTEEEEEEECSS-S-STTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEE
T ss_pred             CCCCCCCCCCceeEEEEEEEE-CCEEEEEEecCC-C-CCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEE
Confidence            344555556678889999998 689999999733 2 7899999999999999999999999999999999888888766


Q ss_pred             eeccCCCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEecccccc
Q 019517          237 HAHNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK  281 (340)
Q Consensus       237 ~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~  281 (340)
                      ........  ...++|.+..... .....+++|+.+++|++++++.+
T Consensus        95 ~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~  140 (157)
T 4dyw_A           95 DHIDAANGEHWVAPVYLAHAFSG-EPRVVEPDRHEALGWFALDDLPQ  140 (157)
T ss_dssp             EEEETTTTEEEEEEEEEESEEES-CCCCSCTTTEEEEEEEETTSCCS
T ss_pred             EeeccCCCcEEEEEEEEEEEcCC-CcccCCCCcEeEEEEECHHHccc
Confidence            55442222  3334555544321 12223457899999999999988

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.82  E-value=1.2e-19  Score=147.83  Aligned_cols=121  Identities=26%  Similarity=0.390  Sum_probs=92.0

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      ++|++++++.+++|||++|..      |.|.+|||++++||++.+||+||++||||+.+....+++..............
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREV   76 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT------SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC------CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEE
Confidence            678999999889999999862      78999999999999999999999999999999888887765443333334445


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  301 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~  301 (340)
                      +|++....  +. ..++.|+.+++|++++++.++....   ..+.+++.+++.
T Consensus        77 ~~~~~~~~--~~-~~~~~e~~~~~w~~~~el~~~~~~~---~~~~~l~~~~~~  123 (126)
T 1vcd_A           77 HWFLMRGE--GA-PRLEEGMTGAGWFSPEEARALLAFP---EDLGLLEVALER  123 (126)
T ss_dssp             EEEEEEEE--SC-CCCCTTCCEEEEECHHHHHHHBCSH---HHHHHHHHHHHH
T ss_pred             EEEEEEcC--CC-CCCCcceeeeEEcCHHHHHHhhcCh---hHHHHHHHHHHh
Confidence            66665432  22 2345788999999999999875433   245666666543

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.82  E-value=1.1e-19  Score=154.50  Aligned_cols=135  Identities=21%  Similarity=0.388  Sum_probs=92.7

Q ss_pred             CCCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEE--EEE
Q 019517          158 PCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV--IAF  235 (340)
Q Consensus       158 ~~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~--l~~  235 (340)
                      |.+++........+++++++.+++|||++|.. .+.++|.|.+|||++++||++.+||+||++||||+.+....+  ++.
T Consensus        19 P~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~-~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   97 (158)
T 3hhj_A           19 PGSMPIKSSLLIVVACALLDQDNRVLLTQRPE-GKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTF   97 (158)
T ss_dssp             --------CEEEEEEEEEBCTTSEEEEEECCC-TTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEE
T ss_pred             CccCCCCCceEEEEEEEEEeCCCEEEEEEeCC-CCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEE
Confidence            33445444555667778888889999999863 355789999999999999999999999999999999876533  443


Q ss_pred             EeeccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          236 RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       236 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                      .............+|.+..  ..+  .++..|..+++|++++++.+++++..   .+.+++.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~e~~~~~W~~~~el~~~~~~~~---~~~il~~~~~  155 (158)
T 3hhj_A           98 ASHGYETFHLLMPLYFCSH--YKG--VAQGREGQNLKWIFINDLDKYPMPEA---DKPLVQVLKN  155 (158)
T ss_dssp             EEEECSSCEEEEEEEEESC--CBS--CCCCTTSCEEEEEEGGGGGGSCCCTT---THHHHHHHHH
T ss_pred             EeeccCCcEEEEEEEEEEE--CCC--ccCCccccceEEEcHHHHhhCCCCcc---hHHHHHHHHH
Confidence            3333333333334444433  222  34457888999999999999988765   3566666554

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.82  E-value=2.3e-19  Score=160.09  Aligned_cols=130  Identities=24%  Similarity=0.349  Sum_probs=100.5

Q ss_pred             CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---
Q 019517          164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN---  240 (340)
Q Consensus       164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~---  240 (340)
                      +.++.++|+++|++ +++|||++|.     ..|.|.+|||++++||++.+||+||++||||+.+....+++......   
T Consensus        64 ~~~~~~~v~~vv~~-~~~vLLv~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~  137 (205)
T 3q1p_A           64 YQTPKVDIRAVVFQ-NEKLLFVKEK-----SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQP  137 (205)
T ss_dssp             SCCCEEEEEEEEEE-TTEEEEEEC--------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSC
T ss_pred             CCCCcceEEEEEEE-CCEEEEEEEc-----CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCC
Confidence            45566888889987 6899999986     36899999999999999999999999999999999888887765431   


Q ss_pred             --CCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517          241 --VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       241 --~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~  305 (340)
                        .......++|.|....  +.+..+ .|+.+++|+++++++++.+...   .+..+..+++..+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~--~~~~~~-~E~~~~~w~~~~el~~l~~~~~---~~~~i~~~~~~~~~~  198 (205)
T 3q1p_A          138 SPSATHVYKIFIGCEIIG--GEKKTS-IETEEVEFFGENELPNLSIARN---TEDQIKEMFAYMKDP  198 (205)
T ss_dssp             CCCSSCEEEEEEEEEEEE--ECCCCC-TTSCCEEEECTTSCCCBCTTTC---CHHHHHHHHHHHHCT
T ss_pred             CCCCceEEEEEEEEEecC--CccCCC-CcceEEEEEeHHHhhhcCCCcc---HHHHHHHHHHHHhCC
Confidence              2234555677776643  334433 8899999999999998877654   367788888877664

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.82  E-value=1e-19  Score=154.67  Aligned_cols=127  Identities=20%  Similarity=0.308  Sum_probs=90.3

Q ss_pred             EEEEEEE---------eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee--
Q 019517          170 GVGGFVI---------NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA--  238 (340)
Q Consensus       170 ~V~~lv~---------~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~--  238 (340)
                      ++|++++         |++.++||+|+++    +++.|.+|||++|+||++.+||+||++||||+.+.....+.....  
T Consensus         5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~----~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   80 (155)
T 3u53_A            5 ACGLIIFRRCLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKREL   80 (155)
T ss_dssp             EEEEEEEEECCCSSSSSCSEEEEEEEESS----SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEE
T ss_pred             EeEEEEEccccccceeCCCcEEEEEEecC----CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeee
Confidence            4677777         4567899999874    357899999999999999999999999999999987766643221  


Q ss_pred             --ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517          239 --HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  304 (340)
Q Consensus       239 --~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~  304 (340)
                        ..........+|++........+. .++|+.+++|++++|+.++...+   -.+.+++.+.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~ea~~~~~~~---~~~~~L~~a~~~L~~  144 (155)
T 3u53_A           81 NYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLCS  144 (155)
T ss_dssp             EEEETTEEEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHHCSH---HHHHHHHHHHHHHHH
T ss_pred             ecCCCcceeEEEEEEEEEeccCCccC-CCcceeEEEEeEHHHHHHHcCCH---HHHHHHHHHHHHHhC
Confidence              112222344556666544333333 34789999999999998764432   246777777665543

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.82  E-value=3.2e-19  Score=147.86  Aligned_cols=125  Identities=19%  Similarity=0.242  Sum_probs=91.4

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      +++++++.+++|||++|. ..+..+|.|.+|||++++||++.+||+||++||||+.+....+++...+..........+|
T Consensus        11 ~~~~ii~~~~~vLl~~r~-~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   89 (140)
T 2rrk_A           11 VVAAIIERDGKILLAQRP-AQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAW   89 (140)
T ss_dssp             EEEEEEEETTEEEEEECC-SSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEcCCEEEEEEcC-CCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEE
Confidence            444445677899999986 3345689999999999999999999999999999999988777776544333333333455


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  303 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~  303 (340)
                      .+...  .+.  ++..|+.+++|++++++.++++...   .+.+++.+++..+
T Consensus        90 ~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~r~  135 (140)
T 2rrk_A           90 HVPDF--HGT--LQAHEHQALVWCSPEEALQYPLAPA---DIPLLEAFMALRA  135 (140)
T ss_dssp             EESEE--EEC--CCCSSCSCEEEECHHHHTTSCCCTT---HHHHHHHHHHHHH
T ss_pred             EEEee--CCC--cCCCccceeEEeCHHHHhhCCCChh---HHHHHHHHHHHhh
Confidence            55432  122  3456788999999999999888654   4677777766533

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.81  E-value=2.4e-19  Score=149.50  Aligned_cols=126  Identities=25%  Similarity=0.361  Sum_probs=91.1

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCceE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQKS  246 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~~~  246 (340)
                      ..+++++++.+++|||++|.. .+.++|.|.||||++++||++.+||+||++||||+.+...  ..+.............
T Consensus         9 ~~~~~vi~~~~~~vLl~~r~~-~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   87 (144)
T 3r03_A            9 LVTAAALIDPDGRVLLAQRPP-GKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHLL   87 (144)
T ss_dssp             EEEEEEEBCTTSCEEEEECCT-TSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEEE
T ss_pred             EEEEEEEEcCCCEEEEEEeCC-CCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEEE
Confidence            446677778889999999863 3457899999999999999999999999999999998765  3333333333333333


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHH
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  302 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l  302 (340)
                      ..+|.+..  ..+  .+...|..+++|++++++.+++++...   +.+++.+.+..
T Consensus        88 ~~~~~~~~--~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~~  136 (144)
T 3r03_A           88 MPLYACRS--WRG--RATAREGQTLAWVRAERLREYPMPPAD---LPLIPILQDWL  136 (144)
T ss_dssp             EEEEEECC--CBS--CCCCCSSCEEEEECGGGGGGSCCCTTT---TTHHHHHHHHC
T ss_pred             EEEEEEEe--cCC--ccCCCCcceEEEEeHHHhccCCCCcch---HHHHHHHhCcc
Confidence            34454443  222  234578889999999999999987653   55666655443

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.81  E-value=2.3e-19  Score=153.59  Aligned_cols=128  Identities=16%  Similarity=0.213  Sum_probs=94.9

Q ss_pred             cceeEEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc
Q 019517          166 THQVGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ  244 (340)
Q Consensus       166 ~~~v~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~  244 (340)
                      ...+++.+++++++ ++|||++|.  ...+.|.|.+|||++++||++.+||+||++||||+.+....+++.........+
T Consensus         8 ~~~~~v~~vi~~~~~~~vLL~~r~--~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   85 (161)
T 3exq_A            8 PVELVTMVMVTDPETQRVLVEDKV--NVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ   85 (161)
T ss_dssp             CEEEEEEEEEBCTTTCCEEEECCC--CCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS
T ss_pred             CceEEEEEEEEeCCCCEEEEEEcc--CCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCC
Confidence            34566778888766 799999986  335677899999999999999999999999999999988888877655442333


Q ss_pred             eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                      ...+.+++.+....+.  +...|..+++|++++++.++++.+.   .+.+++.+++
T Consensus        86 ~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~  136 (161)
T 3exq_A           86 HRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAAS---LPEFLQVFTG  136 (161)
T ss_dssp             SEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTT---HHHHHHHHTT
T ss_pred             eEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChH---HHHHHHHHhh
Confidence            3333344433322333  3456778999999999999887664   4677777665

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.81  E-value=2.7e-19  Score=150.37  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=94.5

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      .+.+++++++.+++|||++|.. .+.++|.|.+|||++++||++.+||+||++||||+.+....+++...+.........
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~-~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   99 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPE-NNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILI   99 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCT-TSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEEEeCC-CCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEE
Confidence            3456666667779999999974 356789999999999999999999999999999999988877766544444333333


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  303 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~  303 (340)
                      .+|.+...  .+.  ++..|+.+++|++++++.++++...   .+.+++.+.+.++
T Consensus       100 ~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~  148 (153)
T 3ees_A          100 LFYEILYW--KGE--PRAKHHMMLEWIHPEELKHRNIPEA---NRKILHKIYKALG  148 (153)
T ss_dssp             EEEEECEE--ESC--CCCSSSSEEEEECGGGGGGSCCCHH---HHTTHHHHHHHTT
T ss_pred             EEEEEEEC--CCC--cCCCccceEEEecHHHhhhCCCCcc---hHHHHHHHHHhhc
Confidence            44555432  222  4467888999999999999887653   4666666665443

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.81  E-value=3.3e-19  Score=147.59  Aligned_cols=126  Identities=21%  Similarity=0.269  Sum_probs=90.5

Q ss_pred             eEEEEEEEeC---CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE----EEEeeccC
Q 019517          169 VGVGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI----AFRHAHNV  241 (340)
Q Consensus       169 v~V~~lv~~~---~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l----~~~~~~~~  241 (340)
                      .+|++++++.   +++|||++|+.    .+|.|.+|||++++||++.+||+||++||||+.+....++    +.......
T Consensus         4 ~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   79 (138)
T 1ktg_A            4 KAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK   79 (138)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET
T ss_pred             EEEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC
Confidence            5678888875   47899999862    4679999999999999999999999999999966544443    22222222


Q ss_pred             CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517          242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  303 (340)
Q Consensus       242 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~  303 (340)
                      .......+|++.....  ....+++|+.+++|++++++.++....   ..+.+++.+.++++
T Consensus        80 ~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~l~  136 (138)
T 1ktg_A           80 GKPKSVKYWLAKLNNP--DDVQLSHEHQNWKWCELEDAIKIADYA---EMGSLLRKFSAFLA  136 (138)
T ss_dssp             TEEEEEEEEEEEECSC--CCCCCCTTEEEEEEECHHHHHHHHCCH---HHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEEecCC--cccCCCchhcEeEeccHHHHHHhhccc---hHHHHHHHHHHHhh
Confidence            2234455666765332  233456899999999999999876544   24677777777664

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.81  E-value=9.4e-20  Score=159.91  Aligned_cols=134  Identities=16%  Similarity=0.220  Sum_probs=97.1

Q ss_pred             eEEEEEEEe---C----CceEEEEEecc-----CCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE
Q 019517          169 VGVGGFVIN---D----NNEVLVVQEKY-----CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR  236 (340)
Q Consensus       169 v~V~~lv~~---~----~~~VLLvqr~~-----~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~  236 (340)
                      ++|+++|+.   +    +++|||++|..     +.....|.|.+|||++|+||++.+||+||++||||+++....+++.+
T Consensus        28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~  107 (187)
T 3i9x_A           28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF  107 (187)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred             ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence            666666654   2    46899999942     22357899999999999999999999999999999999888888876


Q ss_pred             eeccCCC-c-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517          237 HAHNVAF-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       237 ~~~~~~~-~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~  305 (340)
                      ....... + ....+|++.............+|+.+++|++++++.++++.+.   .+.++..++++++..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~---~~~il~~a~~~l~~~  175 (187)
T 3i9x_A          108 DKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFD---HLDMLKKAFSAITEE  175 (187)
T ss_dssp             CCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTT---HHHHHHHHHHHHHHH
T ss_pred             cCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCcc---HHHHHHHHHHHHHhh
Confidence            5433221 1 2334444443221111123457888999999999998877664   378899999888775

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.81  E-value=6.5e-19  Score=149.27  Aligned_cols=119  Identities=24%  Similarity=0.328  Sum_probs=89.9

Q ss_pred             cceeEEEEEEEeCCceEEEEEeccC--CCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-
Q 019517          166 THQVGVGGFVINDNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-  242 (340)
Q Consensus       166 ~~~v~V~~lv~~~~~~VLLvqr~~~--~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~-  242 (340)
                      ....++++++++.+++|||++|...  .+..+|.|.+|||++++||++.+||+||++||||+.+....+++........ 
T Consensus        11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~   90 (159)
T 1sjy_A           11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG   90 (159)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred             eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence            3456788888888899999998631  3446799999999999999999999999999999999888888765543222 


Q ss_pred             CceEEEEEEEEEecCCCc-ccC-CcCceeeEEEEeccccccCCCCC
Q 019517          243 FQKSDLFFICMLKPLSTE-IKV-DDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~~~-~~~-~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      ......+|.+...  .+. +.+ +++|+.+++|++++++.++....
T Consensus        91 ~~~~~~~f~~~~~--~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  134 (159)
T 1sjy_A           91 VLILRHVWLAEPE--PGQTLAPAFTDEIAEASFVSREDFAQLYAAG  134 (159)
T ss_dssp             CEEEEEEEEEEEC--SSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             ceEEEEEEEEEcc--CCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence            2344456666553  233 555 67889999999999998865443

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.81  E-value=3.9e-19  Score=154.36  Aligned_cols=127  Identities=15%  Similarity=0.203  Sum_probs=94.1

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      .++++++++.+++|||++|.......+|.|.+ |||++++||++.+||+||++||||+.+..+..++.+...........
T Consensus        38 ~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  117 (180)
T 2fkb_A           38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG  117 (180)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEE
Confidence            46788888888999999886444445889999 99999999999999999999999999877777765544433333334


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccC--CCCCCCchHHHHHHHHHHH
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ--PLIQGDCMFKKVIDICIAR  301 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~--~~~~~~~~~~~il~~~l~~  301 (340)
                      .+|++.   ..+.+.++++|+.+++|++++++.++  ++.+   ..+.++..+++.
T Consensus       118 ~~f~~~---~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~---~~~~~l~~~~~~  167 (180)
T 2fkb_A          118 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARCDEFTP---DSLKALALWMKR  167 (180)
T ss_dssp             EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTGGGBCH---HHHHHHHHHHHH
T ss_pred             EEEEEe---cCCCcCCChhHhheEEEecHHHHHHHHHHhCC---cHHHHHHHHHHh
Confidence            455555   23455567789999999999999988  4432   234555555443

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.81  E-value=1.1e-18  Score=145.01  Aligned_cols=124  Identities=21%  Similarity=0.253  Sum_probs=90.6

Q ss_pred             CCcceeEEEEEEEe--CCce--EEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec
Q 019517          164 NATHQVGVGGFVIN--DNNE--VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH  239 (340)
Q Consensus       164 ~~~~~v~V~~lv~~--~~~~--VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~  239 (340)
                      +..+.++|++++++  ++++  |||++|...    ++.|.+|||++++||++.+||+||++||||+.+....+++.+...
T Consensus         5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   80 (139)
T 2yyh_A            5 VKTPLLATDVIIRLWDGENFKGIVLIERKYP----PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDP   80 (139)
T ss_dssp             CCCCEEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCT
T ss_pred             ccCCeEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCC
Confidence            34456778888887  6788  999998632    344999999999999999999999999999999888887765542


Q ss_pred             cCC--CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccc--cCCCCCCCchHHHHHHHHHH
Q 019517          240 NVA--FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV--KQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       240 ~~~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~--~~~~~~~~~~~~~il~~~l~  300 (340)
                      ...  ......+|.+...   +.+. .++|+.+++|++++++.  .+.+..     ++++..+++
T Consensus        81 ~~~~~~~~~~~~f~~~~~---~~~~-~~~e~~~~~W~~~~el~~~~l~~~~-----~~~l~~~l~  136 (139)
T 2yyh_A           81 ERDPRAHVVSVVWIGDAQ---GEPK-AGSDAKKVKVYRLEEIPLDKLVFDH-----KKIILDFLK  136 (139)
T ss_dssp             TSCTTSCEEEEEEEEEEE---SCCC-CCTTEEEEEEECTTSCCGGGBCTTH-----HHHHHHHHH
T ss_pred             CcCCCceEEEEEEEEecC---CccC-CCCCcceEEEEEHHHCCHhhcCCCH-----HHHHHHHHh
Confidence            221  2234456666652   2332 45789999999999999  665532     566666543

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.80  E-value=6.3e-19  Score=150.14  Aligned_cols=122  Identities=20%  Similarity=0.197  Sum_probs=87.6

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe----------
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH----------  237 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~----------  237 (340)
                      .++|++++++ +++|||++|+     ..|.|.+|||++++||++.+||+||++||||+++....+++...          
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (159)
T 3f6a_A            6 HFTVSVFIVC-KDKVLLHLHK-----KAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEK   79 (159)
T ss_dssp             CEEEEEEEEE-TTEEEEEECS-----SSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCE
T ss_pred             eEEEEEEEEE-CCEEEEEEcC-----CCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccc
Confidence            3567888887 6899999986     36899999999999999999999999999999988766553210          


Q ss_pred             ---------ecc--CCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          238 ---------AHN--VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       238 ---------~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                               .+.  .......++|++..  ..+.+.++++|+.+++|++++++.++++.+.  -++.+.+...
T Consensus        80 ~~~~p~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~--~~~~l~~~~~  148 (159)
T 3f6a_A           80 LLINPIHTILGDVSPNHSHIDFVYYATT--TSFETSPEIGESKILKWYSKEDLKNAHNIQE--NILVMATEAL  148 (159)
T ss_dssp             EECCCSEEEEECSSSSSCEEEEEEEEEC--SCSCCCCCTTSCCCEEEECSSSSTTCSSSCH--HHHHHHHHHH
T ss_pred             cccCccccccccCCCCceEEEEEEEEEe--CCCCcCCCCCcccceEEeeHHHHhhCcCCCh--hHHHHHHHHH
Confidence                     000  11112334555554  3455566678999999999999999985543  2344444443

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.80  E-value=6.7e-19  Score=151.63  Aligned_cols=123  Identities=23%  Similarity=0.349  Sum_probs=91.6

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      ..++|++++++ +++|||++|..    ..|.|.+|||++++||++.+||+||++||||+++....+++............
T Consensus        22 ~~~~v~~ii~~-~~~vLL~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   96 (171)
T 3id9_A           22 MQVRVTGILIE-DEKVLLVKQKV----ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLL   96 (171)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECSS----TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEE
T ss_pred             eEEEEEEEEEE-CCEEEEEEEEC----CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCcEE
Confidence            34677888876 58999999863    37899999999999999999999999999999998888887766655544555


Q ss_pred             EEEEEEEEecCCCccc-----CCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          247 DLFFICMLKPLSTEIK-----VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~-----~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                      .++|.+...  .+...     .+++|+.+++|++++++.++++.+..   +.+++.++
T Consensus        97 ~~~~~~~~~--~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~---~~~l~~~~  149 (171)
T 3id9_A           97 HITFLLERI--EGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETF---INLISGGL  149 (171)
T ss_dssp             EEEEEEEEC---------------CCCCCEEEEETGGGGGGTCCTTC---SHHHHHGG
T ss_pred             EEEEEEEEc--CCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHH---HHHHHHhh
Confidence            566666543  22222     25688999999999999999877653   45555553

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.80  E-value=2.1e-19  Score=159.75  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=89.6

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      .+|++++++++ +|||++|. +.+..++.|++|||++|+||++.+||+||++||||+.+..+..++.....+........
T Consensus        50 ~av~vl~~~~~-~vLLvrq~-r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  127 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREY-AVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMN  127 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEE
T ss_pred             CEEEEEEEECC-EEEEEEcc-cCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEE
Confidence            45777778876 99999885 44556789999999999999999999999999999999988888776655554445555


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      +|++..... .....+++|..++.|++++++.++....
T Consensus       128 ~f~a~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~~~~  164 (198)
T 1vhz_A          128 IVVAQDLYP-ESLEGDEPEPLPQVRWPLAHMMDLLEDP  164 (198)
T ss_dssp             EEEEEEEEE-CCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             EEEEEeCCc-ccCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            666654322 2334567888999999999999876544

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.80  E-value=3.5e-19  Score=149.87  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=89.8

Q ss_pred             eEEEEEEE---eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEee---c-
Q 019517          169 VGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHA---H-  239 (340)
Q Consensus       169 v~V~~lv~---~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~---~-  239 (340)
                      .+|.++++   +++++|||++|..     .|.|.+|||++|+||++.+||+||++||||+++...  .+......   . 
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   80 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHF   80 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESS-----SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGT
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcC-----CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceee
Confidence            45666665   4668999999962     389999999999999999999999999999998764  22222111   1 


Q ss_pred             --cCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517          240 --NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       240 --~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~  305 (340)
                        ........++|.+......+.+.+ ++|+.+++|++++++.++...+.   .+.++..+.+.++.+
T Consensus        81 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~~  144 (149)
T 3son_A           81 SFNKPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWDS---NKTALYELNERLKNN  144 (149)
T ss_dssp             CSSSCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCHH---HHHHHHHHHHHHHTT
T ss_pred             ccCCceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCHH---HHHHHHHHHHHHhhc
Confidence              111123334566655322344544 48999999999999998876543   477888887777654

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.80  E-value=7.8e-19  Score=148.95  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=86.9

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccCCC-
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNVAF-  243 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~--~~~~l~~~~~~~~~~-  243 (340)
                      +.++|++++++.+++|||++|...  ..+|.|.+|||++++||++.+||+||++||||+.+.  ...+++......... 
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~--~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   94 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF   94 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSS--SSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBT
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCC--CCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccc
Confidence            347889999988899999999742  258999999999999999999999999999999953  556665543322211 


Q ss_pred             -------ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          244 -------QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       244 -------~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                             .....+|.+..  ..+.+..+++|+.+++|++++++.++++.++
T Consensus        95 ~~~~~~~~~~~~~f~~~~--~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  143 (160)
T 1rya_A           95 SGTDFTTHYVVLGFRFRV--SEEELLLPDEQHDDYRWLTSDALLASDNVHA  143 (160)
T ss_dssp             TBSSSCEEEEEEEEEEEC--CGGGCCCCSSSEEEEEEECHHHHHHCTTBCH
T ss_pred             cCCCcCcEEEEEEEEEEc--CccccccCCCccceEEEecHHHHhhccccCH
Confidence                   22334454543  2344555678999999999999999876543

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.80  E-value=7.8e-20  Score=163.35  Aligned_cols=153  Identities=16%  Similarity=0.193  Sum_probs=100.4

Q ss_pred             HHHHhcCceeE----EEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeCCceEE
Q 019517          108 IHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVL  183 (340)
Q Consensus       108 ~~w~~~~~~~v----W~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~~~VL  183 (340)
                      +.|+..+++.|    |+++..+...+++   +....+.     ++                 .+..+|++++++.+++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~---G~~~~~~-----~~-----------------~~~~av~v~i~~~~~~vL   58 (207)
T 1mk1_A            4 HDFETISSETLHTGAIFALRRDQVRMPG---GGIVTRE-----VV-----------------EHFGAVAIVAMDDNGNIP   58 (207)
T ss_dssp             --CCEEEEEEEEECSSEEEEEEEEC--------CEEEE-----EE-----------------EECCEEEEEECCTTSEEE
T ss_pred             CCcEEEeEEEEEeCCEEEEEEEEEECCC---CCEEEEE-----EE-----------------eCCCEEEEEEEcCCCEEE
Confidence            56888877777    8999888887766   2222111     11                 112467888888889999


Q ss_pred             EEEeccCCCCCCCceEcceeeec-CCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcc-
Q 019517          184 VVQEKYCNPAFAGLWKLPTGFID-ESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEI-  261 (340)
Q Consensus       184 Lvqr~~~~~~~~g~W~lPGG~ve-~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~-  261 (340)
                      |+++. +.+...+.|++|||+++ +||++.+||+||++||||+.+..+..++..+..+........+|++......... 
T Consensus        59 Lvrr~-r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  137 (207)
T 1mk1_A           59 MVYQY-RHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPE  137 (207)
T ss_dssp             EEEEE-ETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC--
T ss_pred             EEEee-cCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEEEEEEEEccccCCCCC
Confidence            99986 44456789999999999 9999999999999999999998888777554433333334455666542211111 


Q ss_pred             cCCcCceeeEEEEeccccccCCCCC
Q 019517          262 KVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       262 ~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      ..+++|+.+++|++++++.++....
T Consensus       138 ~~~~~E~~~~~Wv~~~el~~~~~~~  162 (207)
T 1mk1_A          138 AHHEEADMTMGWYPIAEAARRVLRG  162 (207)
T ss_dssp             --------CEEEEEHHHHHHHHHTT
T ss_pred             CCCCCceEEEEEEEHHHHHHHHHcC
Confidence            2456789999999999998876544

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.79  E-value=7.1e-20  Score=159.62  Aligned_cols=117  Identities=19%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      .+|++++++.+++|||++|.. .+.++|.|.+|||++++||++.+||+||++||||+.+..+..++..............
T Consensus        42 ~~v~v~i~~~~~~vLL~~r~~-~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  120 (182)
T 2yvp_A           42 AASFVLPVTERGTALLVRQYR-HPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFH  120 (182)
T ss_dssp             EEEEEEEBCTTSEEEEEEEEE-GGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEEE
T ss_pred             CEEEEEEEcCCCEEEEEEecc-CCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEEE
Confidence            578888888889999999863 3446789999999999999999999999999999999888777654443333334455


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      +|++......+.+..+++|+.+++|++++++.++....
T Consensus       121 ~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  158 (182)
T 2yvp_A          121 PFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG  158 (182)
T ss_dssp             EEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred             EEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            56554322123444567899999999999998765443

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.79  E-value=2.1e-18  Score=160.52  Aligned_cols=138  Identities=19%  Similarity=0.273  Sum_probs=103.5

Q ss_pred             CCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 019517          159 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA  238 (340)
Q Consensus       159 ~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~  238 (340)
                      |....++...++|.+++. .+++|||++|.. .  ..|.|.+|||++|+||++++||+||++||||+++..+.+++....
T Consensus       131 C~~~~yp~~~~~viv~v~-~~~~vLL~rr~~-~--~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~  206 (269)
T 1vk6_A          131 CRERYYPQIAPCIIVAIR-RDDSILLAQHTR-H--RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW  206 (269)
T ss_dssp             SSCEECCCCEEEEEEEEE-ETTEEEEEEETT-T--CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred             CCCEecCCCCcEEEEEEE-eCCEEEEEEecC-C--CCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEec
Confidence            344445555555555444 568999999863 2  268999999999999999999999999999999998888876543


Q ss_pred             ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhccc
Q 019517          239 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY  306 (340)
Q Consensus       239 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y  306 (340)
                      .. . ....++|++...  ++++.++++|+.+++|++++|++.++....  +.+.+++.++++++..|
T Consensus       207 ~~-~-~~~~~~f~a~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~s--i~~~li~~~l~~~r~~~  268 (269)
T 1vk6_A          207 PF-P-QSLMTAFMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPGT--VARRLIEDTVAMCRAEY  268 (269)
T ss_dssp             ET-T-EEEEEEEEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTTS--HHHHHHHHHHHHHHHCC
T ss_pred             CC-C-CEEEEEEEEEEC--CCCcCCCCcceEEEEEEEHHHhhhcccCcH--HHHHHHHHHHHHHHhhc
Confidence            21 1 234455666553  345666778999999999999998866543  77899999999888654

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.79  E-value=1.8e-18  Score=148.83  Aligned_cols=127  Identities=20%  Similarity=0.319  Sum_probs=90.5

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee-----ccC
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA-----HNV  241 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~-----~~~  241 (340)
                      .+.+|++++++.+++|||++|.     ..+.|.+|||++++||++.+||+||++||||+.+....+++....     .+.
T Consensus         7 ~~~~v~~~i~~~~~~vLl~~r~-----~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~   81 (164)
T 2kdv_A            7 YRPNVGIVICNRQGQVMWARRF-----GQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPK   81 (164)
T ss_dssp             EEEEEEEEEECTTSEEEEEEET-----TCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCT
T ss_pred             CCcEEEEEEEccCCEEEEEEEc-----CCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCc
Confidence            4567888999988999999986     368999999999999999999999999999999988877765321     110


Q ss_pred             ----------CCceEEEEEEEEEecCCCcccCC---cCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517          242 ----------AFQKSDLFFICMLKPLSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  298 (340)
Q Consensus       242 ----------~~~~~~~~f~~~~~~~~~~~~~~---~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~  298 (340)
                                ..+....+|++........+.++   ..|+.+++|++++++.+.........++.++...
T Consensus        82 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l  151 (164)
T 2kdv_A           82 RLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEF  151 (164)
T ss_dssp             TTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHH
T ss_pred             ceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHH
Confidence                      11234567777764333334433   3589999999999987654433322344444433

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.79  E-value=7e-19  Score=151.79  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=82.7

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      .+|++++++ +++|||+++. +.+.+++.|.+|||++|+||++.+||+||++||||+ +.....++.....+........
T Consensus        35 ~~v~vii~~-~~~vLL~~~~-r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~~  111 (170)
T 1v8y_A           35 PAVAVIALR-EGRMLFVRQM-RPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKTH  111 (170)
T ss_dssp             CEEEEEEEE-TTEEEEEECC-BTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEEE
T ss_pred             CeEEEEEEE-CCEEEEEEEE-eCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEEE
Confidence            568888888 8999999885 444578899999999999999999999999999999 8888877765544444344556


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      +|++.... ......+++|+.+++|++++++.++....
T Consensus       112 ~f~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~  148 (170)
T 1v8y_A          112 VFLAENLK-EVEAHPDEDEAIEVVWMRPEEALERHQRG  148 (170)
T ss_dssp             EEEEEEEE-ECC--------CEEEEECHHHHHHHHHTT
T ss_pred             EEEEEecc-ccCCCCCCCceEEEEEEEHHHHHHHHHCC
Confidence            66666432 13334467889999999999998765433

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.78  E-value=1.8e-18  Score=145.68  Aligned_cols=111  Identities=22%  Similarity=0.222  Sum_probs=80.6

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc--e
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--K  245 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~--~  245 (340)
                      +++|++++. .+++|||++|.. .+. ++.|.+|||++++||++.+||+||++||||+++....+++.........+  .
T Consensus         8 ~~~v~~ii~-~~~~vLl~~r~~-~~~-~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (153)
T 2b0v_A            8 NVTVAAVIE-QDDKYLLVEEIP-RGT-AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY   84 (153)
T ss_dssp             EEEEEEECE-ETTEEEEEEECS-SSS-CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred             CEEEEEEEe-eCCEEEEEEEcC-CCC-CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEE
Confidence            355565554 568999999863 333 78999999999999999999999999999999988888776533222112  2


Q ss_pred             EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517          246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ...+|.+..... ......++|+.+++|++++++.++
T Consensus        85 ~~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           85 LRFTFSGQVVSF-DPDRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             EEEEEEEEEEEE-CTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred             EEEEEEEEeCCC-CCCCCCCCCeeeEEEecHHHHhhh
Confidence            234455554321 112345678999999999999986

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.78  E-value=1.8e-18  Score=154.48  Aligned_cols=129  Identities=26%  Similarity=0.480  Sum_probs=98.8

Q ss_pred             CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--
Q 019517          164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--  241 (340)
Q Consensus       164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~--  241 (340)
                      +.++.++|.++|+++ ++|||++|.      .|.|.+|||++++||++.+||+||++||||+.+....+++.......  
T Consensus        66 y~~~~~~v~~vv~~~-~~vLLvrr~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~  138 (206)
T 3o8s_A           66 YQTPKLDTRAAIFQE-DKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNP  138 (206)
T ss_dssp             --CCEEEEEEEEEET-TEEEEEECT------TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC
T ss_pred             CCCCCccEEEEEEEC-CEEEEEEec------CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCC
Confidence            455668888888875 899999985      67899999999999999999999999999999988888877652211  


Q ss_pred             ---CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517          242 ---AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       242 ---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~  305 (340)
                         ......++|.|....  +.+..+ .|+.+++|+++++++++++...   ++.++..+++..+..
T Consensus       139 ~~~~~~~~~~~~~~~~~~--~~~~~~-~E~~~~~w~~~~el~~l~~~~~---~~~~l~~~~~~~~~~  199 (206)
T 3o8s_A          139 AKSAHRVTKVFILCRLLG--GEFQPN-SETVASGFFSLDDLPPLYLGKN---TAEQLALCLEASRSE  199 (206)
T ss_dssp             -----CEEEEEEEEEEEE--ECCCCC-SSCSEEEEECTTSCCCBCTTTC---CHHHHHHHHHHHHCS
T ss_pred             CCCCceEEEEEEEEEecC--CeecCC-CCceEEEEEeHHHhhhccCCCc---hHHHHHHHHHHHHCC
Confidence               233445667776532  333333 7899999999999999887554   467788888877654

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.78  E-value=3.7e-18  Score=144.00  Aligned_cols=126  Identities=21%  Similarity=0.337  Sum_probs=88.4

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-CCCceE
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-VAFQKS  246 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~-~~~~~~  246 (340)
                      .++|++++. .+++|||++|. .  ...+.|.+|||++++||++.+||+||++||||+++....+++...... ......
T Consensus         5 ~~~v~~ii~-~~~~vLl~~r~-~--~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T 3shd_A            5 HVTVACVVH-AEGKFLVVEET-I--NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFL   80 (153)
T ss_dssp             EEEEEEEEE-ETTEEEEEEEE-E--TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEE
T ss_pred             ceEEEEEEE-eCCEEEEEEec-C--CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEE
Confidence            455666555 46899999986 2  357889999999999999999999999999999998888887653332 223344


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                      .++|.+..... ....++++|+.+++|++++++...+... ....+.++..++
T Consensus        81 ~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~l~~~~  131 (153)
T 3shd_A           81 RFLFAIELEQI-CPTQPHDSDIDCCRWVSAEEILQASNLR-SPLVAESIRCYQ  131 (153)
T ss_dssp             EEEEEEECSSC-CCCCCCSTTCCEEEEECHHHHHTCSCBS-STHHHHHHHHHH
T ss_pred             EEEEEEEcccc-CcCCCCcccceeeEEecHHHhhcccccc-CchHHHHHHHHH
Confidence            46666665322 2245567899999999999994333222 123445554444

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.78  E-value=6.4e-19  Score=149.86  Aligned_cols=129  Identities=20%  Similarity=0.310  Sum_probs=90.2

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-EeeccC----
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-RHAHNV----  241 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~-~~~~~~----  241 (340)
                      .+.+|++++++.+++|||++|..    .+|.|.+|||++++||++.+||+||++||||+.+..+..... ...+..    
T Consensus        13 ~~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   88 (165)
T 1f3y_A           13 YRRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKV   88 (165)
T ss_dssp             CCCEEEEEEECTTSCEEEEEETT----EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHH
T ss_pred             eeeeEEEEEECCCCcEEEEecCC----CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccc
Confidence            34668888999889999999862    358999999999999999999999999999999754322110 001100    


Q ss_pred             -----------CCceEEEEEEEEEecCCCcccC-----CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517          242 -----------AFQKSDLFFICMLKPLSTEIKV-----DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  303 (340)
Q Consensus       242 -----------~~~~~~~~f~~~~~~~~~~~~~-----~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~  303 (340)
                                 ..+....+|++........+..     +++|+.+++|++++++.++.....    ..+++.++..++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~----~~~~~~~~~~l~  162 (165)
T 1f3y_A           89 REKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFK----KPVYKEVLSVFA  162 (165)
T ss_dssp             HHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGG----HHHHHHHHHHHG
T ss_pred             cccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhh----HHHHHHHHHHhh
Confidence                       0122456777776443333333     357899999999999999765543    455666655554

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.78  E-value=7.8e-18  Score=148.06  Aligned_cols=130  Identities=20%  Similarity=0.310  Sum_probs=94.1

Q ss_pred             CcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc
Q 019517          165 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ  244 (340)
Q Consensus       165 ~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~  244 (340)
                      ..+.++|++++++ +++|||++|...  ...|.|.+|||++++||++.+||+||++||||+.+....++++.....  ..
T Consensus        37 ~~~~~~v~~ii~~-~~~vLL~~r~~~--~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~--~~  111 (189)
T 3cng_A           37 QNPKVIVGCIPEW-ENKVLLCKRAIA--PYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLPH--IS  111 (189)
T ss_dssp             CCCEEEEEEEEEE-TTEEEEEEESSS--SSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGG--GT
T ss_pred             CCCceEEEEEEEe-CCEEEEEEccCC--CCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEecCC--Cc
Confidence            3455778888887 789999999643  237899999999999999999999999999999998777776543322  23


Q ss_pred             eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517          245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  304 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~  304 (340)
                      ...++|++...  .+.+. .++|+.+++|++++++....+..+  ..+.++..+++..+.
T Consensus       112 ~~~~~f~~~~~--~~~~~-~~~E~~~~~W~~~~el~~~~l~~~--~~~~~l~~~l~~~~~  166 (189)
T 3cng_A          112 QVYMLFRAKLL--DLDFF-PGIESLEVRLFGEQEIPWNDIAFR--VIHDPLKRYMEERHH  166 (189)
T ss_dssp             EEEEEEEEEEC--CSCCC-CCTTEEEEEEECTTTCCGGGBSCH--HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEeC--CCccC-CCccceeEEEECHHHcCcccccCh--HHHHHHHHHHHhccC
Confidence            45566666653  23333 367899999999999983222222  246677777766554

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.78  E-value=8e-19  Score=154.58  Aligned_cols=130  Identities=15%  Similarity=0.108  Sum_probs=88.8

Q ss_pred             cccCCCCCCCCCCcceeEEEEEEEeCCc--eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee
Q 019517          153 WIPDGPCVLPGNATHQVGVGGFVINDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV  230 (340)
Q Consensus       153 w~~~~~~~lp~~~~~~v~V~~lv~~~~~--~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~  230 (340)
                      |+...+.+.+..+..+.++++++++.++  +|||++|.......+|.|.+|||++|+||++.+||+||++||||+++...
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~   98 (194)
T 1nqz_A           19 WLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAV   98 (194)
T ss_dssp             CBCC----------CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGC
T ss_pred             HHhhcChhhccCCCCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccce
Confidence            3333333333344555667777778777  99999987544457899999999999999999999999999999999888


Q ss_pred             EEEEEEeeccCCCceEEEEEEEEEecCCCc-ccCCcCceeeEEEEecccc-ccCC
Q 019517          231 EVIAFRHAHNVAFQKSDLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEF-VKQP  283 (340)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~leel-~~~~  283 (340)
                      .+++.........+....+|++.... ... ...+++|+.+++|++++++ .+..
T Consensus        99 ~~l~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A           99 TLLGELDDVFTPVGFHVTPVLGRIAP-EALDTLRVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             EEEEECCCEEETTTEEEEEEEEEECG-GGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             EEEEEccCccCCCCeEEEEEEEEecC-CccccCCCccceeEEEEEEHHHhccCCC
Confidence            88876554444444555666676532 223 4456789999999999999 7643

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.77  E-value=5.9e-18  Score=147.31  Aligned_cols=123  Identities=16%  Similarity=0.129  Sum_probs=87.5

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      ++++ ++++++.+++|||++|..  +...|.|.+|||++++||++.+||+||++||||+.+....+++............
T Consensus        24 ~~~~-~~~vi~~~~~vLL~~r~~--~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  100 (176)
T 3q93_A           24 SRLY-TLVLVLQPQRVLLGMKKR--GFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL  100 (176)
T ss_dssp             EEEE-EEEEEECSSEEEEEEECS--STTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCE
T ss_pred             CcEE-EEEEEEeCCEEEEEEEcC--CCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcE
Confidence            3444 444556778999999853  3468999999999999999999999999999999998888887665443332222


Q ss_pred             --EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          247 --DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       247 --~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                        ..+|.+..  ..+.+  ...|..+++|++++++.++++.+.   .+.++..++
T Consensus       101 ~~~~~f~~~~--~~~~~--~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~  148 (176)
T 3q93_A          101 MDVHVFCTDS--IQGTP--VESDEMRPCWFQLDQIPFKDMWPD---DSYWFPLLL  148 (176)
T ss_dssp             EEEEEEEESC--EESCC--CCCSSEEEEEEETTCCCGGGBCTT---HHHHHHHHH
T ss_pred             EEEEEEEEEC--CCCCc--CCCcceeeEEeeHHHccccccCcc---hHHHHHHHH
Confidence              23444432  22332  345667889999999998887665   255555554

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.77  E-value=5.3e-18  Score=149.98  Aligned_cols=133  Identities=19%  Similarity=0.337  Sum_probs=87.4

Q ss_pred             ceeEEEEEEEeCCc-eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCc-ceeeE----EEEEEeecc
Q 019517          167 HQVGVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD-TEFVE----VIAFRHAHN  240 (340)
Q Consensus       167 ~~v~V~~lv~~~~~-~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~-~~~~~----~l~~~~~~~  240 (340)
                      ..++++++|++.++ +|||++++     ..|.|.+|||++|+||++.+||+||++||||+. +....    .+.......
T Consensus        44 ~h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  118 (197)
T 3fcm_A           44 AHLTSSAFAVNKERNKFLMIHHN-----IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNG  118 (197)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEET-----TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECC
T ss_pred             ccEEEEEEEEECCCCEEEEEEec-----CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecC
Confidence            34567888888765 99999986     467999999999999999999999999999998 44211    111111110


Q ss_pred             -CC-------CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcccCC
Q 019517          241 -VA-------FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG  308 (340)
Q Consensus       241 -~~-------~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y~g  308 (340)
                       ..       .....++|++... ....+.++++|+.+++|++++++.++...+.   ++.+++.+++++++.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~~l~~~~~~  190 (197)
T 3fcm_A          119 HIKRGKYVSSHLHLNLTYLIECS-EDETLMLKEDENSGVMWIPFNEISKYCSEPH---MIPIYEKLINKLKTQSKE  190 (197)
T ss_dssp             EEETTEEECCEEEEEEEEEEECC-TTSCCCCCC----CEEEEEGGGHHHHCCCGG---GHHHHHHHHHHHHC----
T ss_pred             ccccCcccCCceeEEEEEEEEeC-CCcccCCCcccccceEEccHHHHHhhcCCHH---HHHHHHHHHHHHHhcccc
Confidence             00       0112244555443 2234556778999999999999998866443   466888898888876543

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.77  E-value=1.6e-18  Score=144.83  Aligned_cols=122  Identities=20%  Similarity=0.258  Sum_probs=86.8

Q ss_pred             eEEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeec------
Q 019517          169 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAH------  239 (340)
Q Consensus       169 v~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~------  239 (340)
                      ++|++++++.+ ++|||++|...    +|.|.+|||++++||++.+||+||++||||+.+...  .+++.....      
T Consensus        10 ~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   85 (150)
T 2o1c_A           10 VSILVVIYAQDTKRVLMLQRRDD----PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFS   85 (150)
T ss_dssp             EEEEEEEEETTTCEEEEEECSSS----TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCG
T ss_pred             eEEEEEEEeCCCCEEEEEEecCC----CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeec
Confidence            67889999864 89999998632    689999999999999999999999999999998653  344332111      


Q ss_pred             ----cC---CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          240 ----NV---AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       240 ----~~---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                          ..   .......+|.+...  .+.. ....|+.+++|++++++.++.+.+.   .+.+++.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~f~~~~~--~~~~-~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~  147 (150)
T 2o1c_A           86 HLRHRYAPGVTRNTESWFCLALP--HERQ-IVFTEHLAYKWLDAPAAAALTKSWS---NRQAIEQFVI  147 (150)
T ss_dssp             GGGGGBCTTCCEEEEEEEEEEES--SCCC-CCCSSSSCEEEEEHHHHHHHCSCHH---HHHHHHHHTT
T ss_pred             ccccccCCCCcceEEEEEEEEcC--CCCC-cChhHhhccEeecHHHHHhhhcCHH---HHHHHHHHHH
Confidence                01   11234455666553  2222 2347889999999999999876543   4666666543

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.76  E-value=2.8e-18  Score=145.90  Aligned_cols=118  Identities=21%  Similarity=0.373  Sum_probs=84.1

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----------
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA----------  238 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~----------  238 (340)
                      ++++++|++ +++|||++|.     ..|.|.+|||++++||++.+||+||++||||+++.....++....          
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~-----~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   75 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHK-----RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPL   75 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECT-----TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCS
T ss_pred             eEEEEEEEE-CCEEEEEEEc-----CCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccc
Confidence            457788887 7899999986     368999999999999999999999999999999876554321100          


Q ss_pred             ------ccCCCc---eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517          239 ------HNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  304 (340)
Q Consensus       239 ------~~~~~~---~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~  304 (340)
                            ......   ....+|.+..         .+.|+.+++|++++++.++++.+.   .+.+++.+++.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~f~~~~---------~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~  138 (156)
T 1k2e_A           76 VILEEVVKYPEETHIHFDLIYLVKR---------VGGDLKNGEWIDVREIDRIETFPN---VRKVVSLALSTLYR  138 (156)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEEE---------EEECCCSCEEEEGGGGGGSCBSTT---HHHHHHHHHHHHHH
T ss_pred             eeeeeeecCCCCceEEEEEEEEEEe---------cCCcEeeeEEeCHHHHhcCCCChH---HHHHHHHHHHHHHh
Confidence                  001111   1223344442         234678999999999999887654   47777777776544

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.76  E-value=3.1e-18  Score=147.44  Aligned_cols=112  Identities=13%  Similarity=0.186  Sum_probs=84.6

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCc
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQ  244 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~  244 (340)
                      ..++++++++.+++|||++|...+..++|.|+ +|||++++||++.+||+||++||||+.+...  ..++....+.....
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~  113 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS  113 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence            35678888988899999998655555689999 9999999999999999999999999998763  44544331222222


Q ss_pred             eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517          245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ....+|.+..   .+.+.+++.|+.+++|++++++.++
T Consensus       114 ~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~  148 (171)
T 1q27_A          114 SFMCVYELRS---DATPIFNPNDISGGEWLTPEHLLAR  148 (171)
T ss_dssp             SEEEEEEEEC---CCCCCSCTTTCSCCEEECHHHHHHH
T ss_pred             cEEEEEEEEE---CCccccCchhhheEEEecHHHHHHH
Confidence            3444555544   4455566788999999999999854

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.76  E-value=1.1e-18  Score=154.64  Aligned_cols=145  Identities=17%  Similarity=0.235  Sum_probs=83.1

Q ss_pred             eeEEEEEEE--eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce
Q 019517          168 QVGVGGFVI--NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK  245 (340)
Q Consensus       168 ~v~V~~lv~--~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~  245 (340)
                      ...++++++  +.+++|||++|..    .+|.|.+|||++|+||++.+||+||++||||+++....+++.+....  ...
T Consensus        40 ~~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~  113 (194)
T 2fvv_A           40 KKRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKH  113 (194)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTE
T ss_pred             cccEEEEEEEECCCCEEEEEEEeC----CCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC--Cce
Confidence            355666666  3568999999862    35899999999999999999999999999999998888887765422  223


Q ss_pred             EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc--cCCCCCCcCcccchhhhh
Q 019517          246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQLVSAFDGQTS  323 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~--y~g~~~~~l~~~f~~~~~  323 (340)
                      ...+|++..............+..+++|++++++.++....     +.++..++..++.+  |. .....++.+|....+
T Consensus       114 ~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~-----~~~~~~~l~~l~~~~~~~-~~~~~~~~~f~~~~~  187 (194)
T 2fvv_A          114 RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH-----KPVQASYFETLRQGYSAN-NGTPVVATTYSVSAQ  187 (194)
T ss_dssp             EEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT-----CHHHHHHTCC------------------------
T ss_pred             EEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhcC-----cHHHHHHHHHHhhccccc-CchhccCcceEEeec
Confidence            34555555432111111112245689999999998764322     23334444444333  33 366777888855544


Q ss_pred             h
Q 019517          324 S  324 (340)
Q Consensus       324 ~  324 (340)
                      .
T Consensus       188 ~  188 (194)
T 2fvv_A          188 S  188 (194)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.76  E-value=7.4e-18  Score=142.45  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=84.3

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc----
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ----  244 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~----  244 (340)
                      +++++++++ +++|||++|       +|.|.+|||++++||++.+||+||++||||+.+....+++.........+    
T Consensus        20 ~~~~~ii~~-~~~vLl~~r-------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   91 (154)
T 2pqv_A           20 VRATALIVQ-NHKLLVTKD-------KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYH   91 (154)
T ss_dssp             EEEEECCEE-TTEEEEEEE-------TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEE-CCEEEEEec-------CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcce
Confidence            567777776 689999988       46899999999999999999999999999999987777765433222112    


Q ss_pred             eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHH
Q 019517          245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID  296 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~  296 (340)
                      ...++|.+...........+++|+.+++|++++++.++++.+.  ..+.++.
T Consensus        92 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~--~~~~~l~  141 (154)
T 2pqv_A           92 NIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPV--FLKTALP  141 (154)
T ss_dssp             EEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEEST--THHHHTT
T ss_pred             EEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcH--HHHHHhh
Confidence            2234566655321111112356789999999999999987765  3355543

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.76  E-value=3.6e-18  Score=152.96  Aligned_cols=117  Identities=15%  Similarity=0.066  Sum_probs=85.3

Q ss_pred             eEEEEEEEe-CCceEEEEEeccCCCCC-----CCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517          169 VGVGGFVIN-DNNEVLVVQEKYCNPAF-----AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA  242 (340)
Q Consensus       169 v~V~~lv~~-~~~~VLLvqr~~~~~~~-----~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~  242 (340)
                      .+|++++++ ++++|||+++. +.+..     ++.|++|||++|+||++.+||+||++||||+.+..+..++.+...++.
T Consensus        58 ~av~vl~~~~~~~~vLLvrq~-R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~  136 (209)
T 1g0s_A           58 HAAVLLPFDPVRDEVVLIEQI-RIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG  136 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEE-CGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT
T ss_pred             CEEEEEEEECCCCEEEEEEee-cccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCc
Confidence            568888888 57899999874 33332     578999999999999999999999999999999888888766555554


Q ss_pred             CceEEEEEEEEEecC--CC-cccCCcCceeeEEEEeccccccCCCCC
Q 019517          243 FQKSDLFFICMLKPL--ST-EIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~--~~-~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      ......+|++.....  .+ ....+++|..++.|+|++++.++....
T Consensus       137 ~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g  183 (209)
T 1g0s_A          137 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  183 (209)
T ss_dssp             BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT
T ss_pred             cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence            444556666664221  12 123466788899999999998865443

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.76  E-value=3.7e-18  Score=142.70  Aligned_cols=122  Identities=18%  Similarity=0.173  Sum_probs=86.4

Q ss_pred             cceeEEEEEEEeC-CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec-c--C
Q 019517          166 THQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH-N--V  241 (340)
Q Consensus       166 ~~~v~V~~lv~~~-~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~-~--~  241 (340)
                      ..+.+++++++++ +++|||++|.      .|.|.+|||++++||++.+||+||++||||+.+....+++..... .  .
T Consensus        16 ~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   89 (148)
T 2azw_A           16 QTRYAAYIIVSKPENNTMVLVQAP------NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNH   89 (148)
T ss_dssp             EECCEEEEECEEGGGTEEEEEECT------TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETT
T ss_pred             eeeeEEEEEEECCCCCeEEEEEcC------CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCC
Confidence            3456788888876 7899999973      379999999999999999999999999999999888777654211 1  1


Q ss_pred             C---CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          242 A---FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       242 ~---~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                      .   ......+|.+....  ... ...+|+.+++|++++++.++.....   .+.+++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~--~~~-~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~  144 (148)
T 2azw_A           90 RQTAYYNPGYFYVANTWR--QLS-EPLERTNTLHWVAPEEAVRLLKRGS---HRWAVEKWL  144 (148)
T ss_dssp             TTEEEEEEEEEEEEEEEE--ECS-SCC-CCSEEEEECHHHHHHHBSCHH---HHHHHHHHH
T ss_pred             CCcceEEEEEEEEEEcCc--CCc-CCCCceeeEEEeeHHHHHhhhcchh---HHHHHHHHH
Confidence            1   11233455555432  222 2346778999999999998765442   466666654

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.75  E-value=1.2e-18  Score=156.20  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=104.2

Q ss_pred             HHHhcCceeE----EEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeC--CceE
Q 019517          109 HWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIND--NNEV  182 (340)
Q Consensus       109 ~w~~~~~~~v----W~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~--~~~V  182 (340)
                      .|+..+++.+    |+++..+...+++   +....|..+..             +..+......++|.+++.++  +++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~~~~v~~-------------~~~~~~~~~av~v~~v~~~~~~~~~v   79 (212)
T 2dsc_A           16 KQYIISEELISEGKWVKLEKTTYMDPT---GKTRTWESVKR-------------TTRKEQTADGVAVIPVLQRTLHYECI   79 (212)
T ss_dssp             CCEEEEEEEEEECSSEEEEEEEEECTT---SCEEEEEEEEE-------------TTCCTTSCSEEEEEEEEECTTSCCEE
T ss_pred             CceEeeEEEEeeCCEEEEEEEEEECCC---CCEEEEEEEEe-------------eccCCCCCCEEEEEEEEeCCCCCcEE
Confidence            6888877766    9999888888776   32222222210             00000111223344444443  2589


Q ss_pred             EEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCC---
Q 019517          183 LVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLST---  259 (340)
Q Consensus       183 LLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~---  259 (340)
                      ||+++. +++..++.|++|||++|+||++.+||+||++||||+.+....+++.....+.......++|++.+.....   
T Consensus        80 lLv~q~-R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  158 (212)
T 2dsc_A           80 VLVKQF-RPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENA  158 (212)
T ss_dssp             EEEEEE-EGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGGGS
T ss_pred             EEEEee-cCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCcccccc
Confidence            999874 3444567899999999999999999999999999999987777654444444334445556665443211   


Q ss_pred             --cccCCcCceeeEEEEeccccccCCC
Q 019517          260 --EIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       260 --~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                        ...++++|+.++.|++++++.++..
T Consensus       159 ~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          159 RPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             SCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             CCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence              3345678999999999999987643

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.75  E-value=8.6e-19  Score=143.04  Aligned_cols=118  Identities=19%  Similarity=0.275  Sum_probs=85.2

Q ss_pred             EEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEE
Q 019517          172 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFI  251 (340)
Q Consensus       172 ~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~  251 (340)
                      .+++++.+++|||++|.. .+.++|.|.+|||++++||++.+||+||++||||+.+.....++...+..........+|.
T Consensus         8 ~~ii~~~~~~vLl~~r~~-~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
T 1mut_A            8 VGIIRNENNEIFITRRAA-DAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWL   86 (129)
T ss_dssp             CEECEETTTEEEEEECSS-CCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEE
T ss_pred             EEEEEecCCEEEEEEeCC-CCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEE
Confidence            345567889999999863 3467899999999999999999999999999999998776665543332222222234555


Q ss_pred             EEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHH
Q 019517          252 CMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI  297 (340)
Q Consensus       252 ~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~  297 (340)
                      +...  .+.  +..+|+.+++|++++++.+++++...   +.+++.
T Consensus        87 ~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~  125 (129)
T 1mut_A           87 VERW--EGE--PWGKEGQPGEWMSLVGLNADDFPPAN---EPVIAK  125 (129)
T ss_dssp             EEEC--SSC--CCCCSSCCCEEEESSSCCTTTSCTTC---HHHHHH
T ss_pred             EEcc--CCc--cCCcccceeEEeCHHHcccccCCchh---HHHHHH
Confidence            5542  222  34567889999999999998887653   445443

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=2e-18  Score=144.56  Aligned_cols=111  Identities=25%  Similarity=0.288  Sum_probs=75.4

Q ss_pred             EEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 019517          171 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF  249 (340)
Q Consensus       171 V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~  249 (340)
                      +++++++.+ ++|||+++.     ..|.|.+|||++++||++.+||+||++||||+.+.....+..+.... ..+....+
T Consensus         7 ~~~~i~~~~~~~vLl~~r~-----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-~~~~~~~~   80 (146)
T 2jvb_A            7 RGAAIFNENLSKILLVQGT-----ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERN-IQGKNYKI   80 (146)
T ss_dssp             EEEEEBCTTSSEEEEECCS-----SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEE-ETTEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEEc-----CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccc-cCCceEEE
Confidence            677777765 899999875     35899999999999999999999999999999886432211111111 11222233


Q ss_pred             EEEEEecCCCcccC-CcCceeeEEEEeccccccCCCCCC
Q 019517          250 FICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       250 f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      |++..........+ +++|+.+++|++++++.++.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~  119 (146)
T 2jvb_A           81 FLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSN  119 (146)
T ss_dssp             EEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSS
T ss_pred             EEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccc
Confidence            33322121112222 367899999999999998765544

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.75  E-value=1.4e-17  Score=140.71  Aligned_cols=122  Identities=11%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             ceeEEEEEEEeCCce----EEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517          167 HQVGVGGFVINDNNE----VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA  242 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~----VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~  242 (340)
                      +.++|++++.+ +++    |||++|... + ++| |.+|||++++||++.+||+||++||||+.+....+++........
T Consensus         7 ~~~~~~~ii~~-~~~~~~~vLl~~r~~~-~-~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   82 (155)
T 2b06_A            7 TILTNICLIED-LETQRVVMQYRAPENN-R-WSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDT   82 (155)
T ss_dssp             EEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTT
T ss_pred             cEEEEEEEEEE-CCCCeEEEEEEECCCC-C-CCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCC
Confidence            45667777877 445    888887632 2 556 999999999999999999999999999999888887765544321


Q ss_pred             -CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          243 -FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       243 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                       ......+|.+...  .+.  +...|..+++|++++++.++++...   .+.+++.+.
T Consensus        83 ~~~~~~~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~  133 (155)
T 2b06_A           83 GGRYIVICYKATEF--SGT--LQSSEEGEVSWVQKDQIPNLNLAYD---MLPLMEMME  133 (155)
T ss_dssp             SCEEEEEEEEECEE--EEC--CCCBTTBEEEEEEGGGGGGSCBCTT---HHHHHHHHH
T ss_pred             CceEEEEEEEEEec--CCC--CCCCcceeeEEeeHHHhhhCCCChh---HHHHHHHHh
Confidence             2223344444332  222  2346788999999999999987654   366665554

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.74  E-value=3e-18  Score=150.53  Aligned_cols=133  Identities=14%  Similarity=0.204  Sum_probs=93.5

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeec---cCCC
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFV-EVIAFRHAH---NVAF  243 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~~-~~l~~~~~~---~~~~  243 (340)
                      .+|++++++.+++|||++|.......+|.|.+ |||++++||++.+||+||++||||+.+..+ ..++.+...   ....
T Consensus        33 ~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  112 (190)
T 1hzt_A           33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI  112 (190)
T ss_dssp             ECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred             EEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence            35788889888999999986555556899999 999999999999999999999999999877 555322211   1111


Q ss_pred             --ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC---CchHHHHHHHHHHHHhc
Q 019517          244 --QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG---DCMFKKVIDICIARLRK  304 (340)
Q Consensus       244 --~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~---~~~~~~il~~~l~~l~~  304 (340)
                        .....+|++..   .+.+.++++|+.+++|++++++.++.....   ...++.+++.++++...
T Consensus       113 ~~~~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~~~  175 (190)
T 1hzt_A          113 VENEVCPVFAART---TSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKRL  175 (190)
T ss_dssp             EEEEECCEEEEEB---CSCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHHHH
T ss_pred             cceEEEEEEEEec---CCCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHHhh
Confidence              12224455553   245556678999999999999987632111   22456666666665443

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.74  E-value=1.4e-18  Score=161.79  Aligned_cols=194  Identities=19%  Similarity=0.194  Sum_probs=109.9

Q ss_pred             ceeecccCCCCcEEEcCCCCCCChhHHHHHHHHHH--HHHHhcCc-eeEEEecCCccccchHHHHhccc---cccccCcc
Q 019517           73 RVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSL--IHWRRMNK-KGIWLKLPLENAELVPIAVKEGF---KYHHAEPE  146 (340)
Q Consensus        73 ~~~~~~~d~~~g~~v~~~~~~~~~~~f~~~l~~~l--~~w~~~~~-~~vW~~l~~~~~~l~~~a~~~~f---~~h~~~~~  146 (340)
                      ++.+..+|-+.+.+|+.....   -.....|-..|  .+|--.+. +..+-++|.        +...+|   .|||+.  
T Consensus        12 ~~~~~l~dl~~rfi~n~p~~~---~~~~~~~~f~ie~a~wfy~d~~~~~~~~~p~--------~~~~~f~~~~f~~~~--   78 (271)
T 2a6t_A           12 TFSQVLDDLSARFILNLPAEE---QSSVERLCFQIEQAHWFYEDFIRAQNDQLPS--------LGLRVFSAKLFAHCP--   78 (271)
T ss_dssp             CTHHHHHHHHHHHTTTSCGGG---TTCHHHHHHHHHHHHHHHHHTHHHHCSSSCC--------CCHHHHHHHHHTTCH--
T ss_pred             CHHHHHHHHHHHHhhcCCHHH---hccHHHHHHHHHHHHHHHHHhhhhcccCCCc--------ccHHHHHHHHhhhhh--
Confidence            455556666777777653221   11123333333  56655443 221223343        123344   688884  


Q ss_pred             cccccccccCCCCCCCC---CCcceeEEEEEEEeC-CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHH
Q 019517          147 YLMLTYWIPDGPCVLPG---NATHQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE  222 (340)
Q Consensus       147 y~~l~~w~~~~~~~lp~---~~~~~v~V~~lv~~~-~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EE  222 (340)
                        ++..|.+.....++.   +.....+++++++++ +++|||++|..    .+|.|.+|||++|+||++.+||+||++||
T Consensus        79 --~l~~~~~~~~~~~~~~~~~~~~v~~v~avv~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEs~~eAA~REl~EE  152 (271)
T 2a6t_A           79 --LLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWK----ASSGWGFPKGKIDKDESDVDCAIREVYEE  152 (271)
T ss_dssp             --HHHHC---CCHHHHHHHHHSCCCCEEEEEEBCSSSSEEEEEEESS----TTCCCBCSEEECCTTCCHHHHHHHHHHHH
T ss_pred             --hhhcccccchhHHHHHHhcCCCCCeEEEEEEECCCCEEEEEEEeC----CCCeEECCcccCCCCcCHHHHHHHHHHHH
Confidence              566777643322221   112234567888875 48999999852    35889999999999999999999999999


Q ss_pred             hCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcccC-CcCceeeEEEEeccccccCCCCC
Q 019517          223 TGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       223 TGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      ||+++..+..+..+. .....+....+|++..........+ +++|+.+++|++++++.++....
T Consensus       153 tGl~~~~l~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  216 (271)
T 2a6t_A          153 TGFDCSSRINPNEFI-DMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK  216 (271)
T ss_dssp             HCCCCTTTCCTTCEE-EEEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC---
T ss_pred             hCCCceeeeeeeeec-cCCcCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcC
Confidence            999987642221111 1111123345566654332332233 56899999999999999876543

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.74  E-value=1.6e-17  Score=146.19  Aligned_cols=122  Identities=20%  Similarity=0.265  Sum_probs=84.6

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce---E
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK---S  246 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~---~  246 (340)
                      .+++++.+ +++|||++|.     ..|.|.+|||++++||++.+||+||++||||+.+....+++...........   .
T Consensus         6 v~~~vi~~-~~~vLL~~r~-----~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   79 (188)
T 3fk9_A            6 VTNCIVVD-HDQVLLLQKP-----RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSE   79 (188)
T ss_dssp             EEEEEEEE-TTEEEEEECT-----TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEE-CCEEEEEEeC-----CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEE
Confidence            34555555 6899999985     4789999999999999999999999999999999887777655443322221   1


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  301 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~  301 (340)
                      .+.+++.+....+.+.. ..|..+++|++++++.++++.+.   .+.+++.+++.
T Consensus        80 ~~~~~f~a~~~~~~~~~-~~e~~~~~W~~~~el~~~~l~~~---~~~~l~~~l~~  130 (188)
T 3fk9_A           80 WMLFTFKATEHEGEMLK-QSPEGKLEWKKKDEVLELPMAAG---DKWIFKHVLHS  130 (188)
T ss_dssp             EEEEEEEESCEESCCCS-EETTEEEEEEEGGGGGGSCCCHH---HHHHHHHHTTC
T ss_pred             EEEEEEEEECCCCCCcC-CCCCEeEEEEEHHHhhhCCCCHH---HHHHHHHHHcC
Confidence            13333333322333332 33446899999999999887654   35666666543

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.74  E-value=6.7e-18  Score=149.01  Aligned_cols=113  Identities=18%  Similarity=0.106  Sum_probs=84.1

Q ss_pred             eEEEEEEEeC-CceEEEEEeccCCCC------CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517          169 VGVGGFVIND-NNEVLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV  241 (340)
Q Consensus       169 v~V~~lv~~~-~~~VLLvqr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~  241 (340)
                      .+|++++++. ++++||+++. +.+.      .++.|++|||++| ||++.+||+||++||||+++..+..++.....+.
T Consensus        46 ~av~v~~~~~~~~~vlLv~~~-r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~  123 (191)
T 3o6z_A           46 NGATILLYNTKKKTVVLIRQF-RVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG  123 (191)
T ss_dssp             CEEEEEEEETTTTEEEEEEEE-CHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTT
T ss_pred             CEEEEEEEECCCCEEEEEEcC-CccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCC
Confidence            4678888884 6899999885 3222      6788999999999 9999999999999999999988888887666655


Q ss_pred             CCceEEEEEEEEEecCCC---cccCCcCceeeEEEEeccccccCCC
Q 019517          242 AFQKSDLFFICMLKPLST---EIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       242 ~~~~~~~~f~~~~~~~~~---~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      .......+|++.......   .... ++|+.+++|+|++++.++..
T Consensus       124 ~~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~  168 (191)
T 3o6z_A          124 GVTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEMIK  168 (191)
T ss_dssp             TBCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHHH
T ss_pred             ccCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHHHH
Confidence            555566667766532110   1122 67899999999999987644

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.73  E-value=3.4e-17  Score=141.08  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=80.8

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      +.+++++++.++++||++|+      .|.|.+|||++++||++.+||+||++||||+++....+++.+....    ....
T Consensus        16 ~~~~~~ii~~~~~vLL~~r~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~~   85 (163)
T 3f13_A           16 ARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF----NAHK   85 (163)
T ss_dssp             EEEEEEECEETTEEEEEECC---------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEEE
T ss_pred             eEEEEEEEEeCCEEEEEEEC------CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEEE
Confidence            44555566667899999885      4789999999999999999999999999999998888776543221    4455


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  301 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~  301 (340)
                      +|+|..   ++.+.+. +|+.+++|++ .+....++.+.   .+.+++.+.+.
T Consensus        86 ~f~~~~---~~~~~~~-~E~~~~~W~~-~~~~~~~l~~~---~~~il~~~~~~  130 (163)
T 3f13_A           86 VYLCIA---QGQPKPQ-NEIERIALVS-SPDTDMDLFVE---GRAILRRYARL  130 (163)
T ss_dssp             EEEEEC----CCCCCC-TTCCEEEEES-STTCSSCBCHH---HHHHHHHHHHH
T ss_pred             EEEEEE---CCcCccC-CCceEEEEEC-cccccCCCCHH---HHHHHHHHHHh
Confidence            566653   3455544 4899999999 44455555442   36666666554

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=151.19  Aligned_cols=116  Identities=14%  Similarity=0.094  Sum_probs=82.8

Q ss_pred             eeEEEEEEEe-CCceEEEEEeccCCCCC-------------------------------CCceEcceeeecC-CCCHHHH
Q 019517          168 QVGVGGFVIN-DNNEVLVVQEKYCNPAF-------------------------------AGLWKLPTGFIDE-SEEIFKG  214 (340)
Q Consensus       168 ~v~V~~lv~~-~~~~VLLvqr~~~~~~~-------------------------------~g~W~lPGG~ve~-GEs~~eA  214 (340)
                      ..+|++++++ .++++||+++. +++..                               ++.|++|||++|+ ||++.+|
T Consensus        36 ~~aV~vl~~~~~~~~vlLvrQ~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~ea  114 (218)
T 3q91_A           36 HDSVTVLLFNSSRRSLVLVKQF-RPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEV  114 (218)
T ss_dssp             CCEEEEEEEEGGGTEEEEEEEE-CHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHH
T ss_pred             CCeEEEEEEECCCCEEEEEEcc-ccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHH
Confidence            4678889998 46899999874 33322                               6799999999999 9999999


Q ss_pred             HHHHHHHHhCCcc--eeeEEEEEEeeccCCCceEEEEEEEEEecC----CCcccCCcCceeeEEEEeccccccCCC
Q 019517          215 AVREVKEETGVDT--EFVEVIAFRHAHNVAFQKSDLFFICMLKPL----STEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       215 AiREv~EETGi~~--~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      |+||++||||+.+  ..+..++.+...++.......+|++.....    .+...++++|+.++.|++++++.++..
T Consensus       115 A~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i~  190 (218)
T 3q91_A          115 ACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFAD  190 (218)
T ss_dssp             HHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHHH
T ss_pred             HHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHHH
Confidence            9999999999998  677777766555555555666777765321    123455678999999999999987643

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.70  E-value=5.6e-17  Score=137.41  Aligned_cols=126  Identities=17%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             ceeEEEEEEEeC---CceEEEEEeccCCCCCCCceEcceeeecCCCCHH-HHHHHHHHHHhC-CcceeeEEEEEEeeccC
Q 019517          167 HQVGVGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF-KGAVREVKEETG-VDTEFVEVIAFRHAHNV  241 (340)
Q Consensus       167 ~~v~V~~lv~~~---~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~-eAAiREv~EETG-i~~~~~~~l~~~~~~~~  241 (340)
                      ++..+.++|.++   +++|||++|. ..+.++|.|+||||.+++||++. +||+||++|||| +.+.....++...+...
T Consensus        18 ~~~~~~~vi~~~~~~~~~vLl~~R~-~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~   96 (155)
T 1x51_A           18 EESSATCVLEQPGALGAQILLVQRP-NSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS   96 (155)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECC-CCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS
T ss_pred             eEEEEEEEEEecCCCCCEEEEEECC-CCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecC
Confidence            445555666664   5899999986 34567899999999999999996 999999999999 88766666554333333


Q ss_pred             CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       242 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                      .......+|.+...  .+.  +...|..+++|++++++.+++++..   .+.+++.+++
T Consensus        97 ~~~~~~~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~  148 (155)
T 1x51_A           97 HIKLTYQVYGLALE--GQT--PVTTVPPGARWLTQEEFHTAAVSTA---MKKVFRVYQG  148 (155)
T ss_dssp             SCEEEEEEEEEECS--SCC--CCCCCCTTEEEEEHHHHHHSCCCHH---HHHHHHHHHH
T ss_pred             CccEEEEEEEEEEc--CCC--CCCCCCCccEEccHHHhhhcCCCHH---HHHHHHHHHh
Confidence            33333345555432  222  2335677899999999999887543   4666665543

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.68  E-value=3.2e-16  Score=149.21  Aligned_cols=132  Identities=20%  Similarity=0.275  Sum_probs=84.2

Q ss_pred             CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE------EEEe
Q 019517          164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI------AFRH  237 (340)
Q Consensus       164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l------~~~~  237 (340)
                      ++...++|++++++ +++|||++|...  ..+|.|.+|||++|+||++.+||+||++||||+++....++      ..+.
T Consensus       199 ~~~~~~~v~~vi~~-~~~vLL~~r~~~--~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  275 (341)
T 2qjo_A          199 YAPTFITTDAVVVQ-AGHVLMVRRQAK--PGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFD  275 (341)
T ss_dssp             SCCCEEEEEEEEEE-TTEEEEEECCSS--SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEEC
T ss_pred             CCCCceEEEEEEEe-CCEEEEEEecCC--CCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEe
Confidence            34456778888874 689999998632  35789999999999999999999999999999998744322      2222


Q ss_pred             ec-cCCCc-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC--CCCCCCchHHHHHHHHHHH
Q 019517          238 AH-NVAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ--PLIQGDCMFKKVIDICIAR  301 (340)
Q Consensus       238 ~~-~~~~~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~--~~~~~~~~~~~il~~~l~~  301 (340)
                      .. ....+ ...++|++...........+++|+.+++|++++++.++  ++.+.   .+.+++.+++.
T Consensus       276 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~---~~~il~~~~~~  340 (341)
T 2qjo_A          276 APGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYED---HFQIIQHFVSK  340 (341)
T ss_dssp             CTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTT---HHHHHHHHC--
T ss_pred             CCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchH---HHHHHHHHHhc
Confidence            11 11111 23456666653211111235688999999999999987  45443   26677766543

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.68  E-value=7e-16  Score=147.73  Aligned_cols=135  Identities=20%  Similarity=0.287  Sum_probs=92.1

Q ss_pred             CCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEE------EEEE
Q 019517          163 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV------IAFR  236 (340)
Q Consensus       163 ~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~------l~~~  236 (340)
                      .++...++|+++|+ .+++|||++|...  ..+|.|.+|||++|+||++.+||+||++||||+++....+      ...+
T Consensus       203 ~~~~~~~~v~~vv~-~~~~vLL~~r~~~--~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~  279 (352)
T 2qjt_B          203 PFKPNFVTVDALVI-VNDHILMVQRKAH--PGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVF  279 (352)
T ss_dssp             SSCCEEEEEEEEEE-ETTEEEEEEESSS--SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEE
T ss_pred             CCCCCceEEEEEEE-ECCEEEEEEEcCC--CCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEe
Confidence            34455677888887 4689999998643  2578999999999999999999999999999999864321      1121


Q ss_pred             eeccC-CCc-eEEEEEEEEEecCCCccc-CCcCceeeEEEEec-cccccC--CCCCCCchHHHHHHHHHHHHh
Q 019517          237 HAHNV-AFQ-KSDLFFICMLKPLSTEIK-VDDLEIKGAKWMPF-MEFVKQ--PLIQGDCMFKKVIDICIARLR  303 (340)
Q Consensus       237 ~~~~~-~~~-~~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~l-eel~~~--~~~~~~~~~~~il~~~l~~l~  303 (340)
                      ..... ..+ ...+.|++........+. .+++|+.+++|+++ +++.++  .+.+.   .+.+++.++++++
T Consensus       280 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~---~~~il~~~~~~l~  349 (352)
T 2qjt_B          280 DYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLED---HYQIITILLEECG  349 (352)
T ss_dssp             CCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTT---HHHHHHHHHHHTC
T ss_pred             cCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChh---HHHHHHHHHHHhc
Confidence            11111 111 234556666532211122 24688999999999 999987  44432   3778888887663

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.66  E-value=1.3e-16  Score=143.00  Aligned_cols=108  Identities=21%  Similarity=0.276  Sum_probs=73.9

Q ss_pred             EEEEEEeCCceEEEEEeccCCC--CCCCceEc-ceeeecCCCC--H----HHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517          171 VGGFVINDNNEVLVVQEKYCNP--AFAGLWKL-PTGFIDESEE--I----FKGAVREVKEETGVDTEFVEVIAFRHAHNV  241 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~--~~~g~W~l-PGG~ve~GEs--~----~eAAiREv~EETGi~~~~~~~l~~~~~~~~  241 (340)
                      +..+++..+++|||++|..+++  ...|.|.+ |||+||+||+  +    .+||+||++||||+++....+++.......
T Consensus        70 i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~  149 (211)
T 3e57_A           70 IPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTT  149 (211)
T ss_dssp             EEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSS
T ss_pred             EEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCC
Confidence            3444445578999999974332  14578998 9999999998  4    999999999999999988888887654322


Q ss_pred             CCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517          242 AFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       242 ~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ..+  ...++|.|...  .+  .+.+.|..+++|++++++.++
T Consensus       150 ~~~~~~l~~~f~~~~~--~g--~~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          150 EVSRVHLGALFLGRGK--FF--SVKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             HHHHTEEEEEEEEEEE--EE--EESCTTTCEEEEEEHHHHHHH
T ss_pred             CCCeEEEEEEEEEEeC--Cc--eeCCCCeEEEEEEEHHHHHHh
Confidence            222  22345666543  22  345667789999999999886

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.64  E-value=9.7e-16  Score=148.09  Aligned_cols=119  Identities=22%  Similarity=0.261  Sum_probs=85.3

Q ss_pred             CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-------------Cc
Q 019517          178 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-------------FQ  244 (340)
Q Consensus       178 ~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~-------------~~  244 (340)
                      ++.+|||++|.     ..|.|.+|||++|+||++.+||+||++||||+++....+++........             ..
T Consensus        36 ~~~~vLLv~r~-----~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~  110 (364)
T 3fjy_A           36 DSIEVCIVHRP-----KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADT  110 (364)
T ss_dssp             TTEEEEEEEET-----TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC--------------------
T ss_pred             CceEEEEEEcC-----CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCc
Confidence            34589999985     3589999999999999999999999999999999888877754432221             12


Q ss_pred             eEEEEEEEEEecCC----------CcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517          245 KSDLFFICMLKPLS----------TEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  304 (340)
Q Consensus       245 ~~~~~f~~~~~~~~----------~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~  304 (340)
                      ....+|++......          .....+++|+.+++|++++++.++....   ..+.+++.++++++.
T Consensus       111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~---~~r~il~~~~~~l~~  177 (364)
T 3fjy_A          111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHS---TDKDTLAVFVDRVQE  177 (364)
T ss_dssp             -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCH---HHHHHHHHHHHHHHT
T ss_pred             eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcch---hhHHHHHHHHHHhcc
Confidence            34456666553211          1123456899999999999999876543   247788888887754

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.60  E-value=3.2e-15  Score=144.98  Aligned_cols=123  Identities=15%  Similarity=0.086  Sum_probs=92.6

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      ...+++++.|.+|+|||+||. ..+.++|.|+||||.+|+| ++.+|++||++||||+.+.....++...+....+....
T Consensus       240 ~~~~~~vi~~~~g~vLL~rR~-~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~  317 (369)
T 3fsp_A          240 VPLAVAVLADDEGRVLIRKRD-STGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQL  317 (369)
T ss_dssp             EEEEEEEEECSSSEEEEEECC-SSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEE
T ss_pred             EEEEEEEEEeCCCEEEEEECC-CCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEE
Confidence            444566677788999999996 4556889999999999999 99999999999999999987776665544444444444


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHH
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  302 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l  302 (340)
                      .+|.+....  +     ..|..+++|++++++.+++++..   .+.+++.+.+.+
T Consensus       318 ~~~~~~~~~--~-----~~e~~~~~Wv~~~el~~~~l~~~---~~~il~~l~~~~  362 (369)
T 3fsp_A          318 TVFPGRLVH--G-----GPVEEPYRLAPEDELKAYAFPVS---HQRVWREYKEWA  362 (369)
T ss_dssp             EEEEEEECC--S-----SCCCTTEEEEEGGGGGGSCCCHH---HHHHHHHHHHHT
T ss_pred             EEEEEEEcC--C-----CCCccccEEeeHHHhhhCCCCHH---HHHHHHHHHHHh
Confidence            555555421  1     35778899999999999887653   466776665543

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.60  E-value=1.1e-14  Score=132.75  Aligned_cols=130  Identities=17%  Similarity=0.207  Sum_probs=89.5

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCC------CCH---HHHHHHHHHHHhCCccee-----eEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDES------EEI---FKGAVREVKEETGVDTEF-----VEVI  233 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~G------Es~---~eAAiREv~EETGi~~~~-----~~~l  233 (340)
                      .++.+++++.+|+|||++|...+..++|.|++| ||++++|      |++   .+||+||++||||+.+..     +..+
T Consensus        60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l  139 (235)
T 2dho_A           60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL  139 (235)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred             EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence            457888899889999999876666688999999 5999999      884   999999999999998652     3555


Q ss_pred             EEEee-ccC--CCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC------CCCchHHHHHHHHHHH
Q 019517          234 AFRHA-HNV--AFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI------QGDCMFKKVIDICIAR  301 (340)
Q Consensus       234 ~~~~~-~~~--~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~------~~~~~~~~il~~~l~~  301 (340)
                      +.+.. ...  ...  ....+|++..   ...+.++++|+.+++|++++++.++...      .-...++.+++.++..
T Consensus       140 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~ftp~~~~i~~~~L~~  215 (235)
T 2dho_A          140 TRIHYKAQSDGIWGEHEIDYILLVRM---NVTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFLFK  215 (235)
T ss_dssp             EEEEEEEECSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHHHHHHHTTSSCBCHHHHHHHHHTHHH
T ss_pred             EEEEEeccCCCccceeEEEEEEEEEE---CCCCcCChHHEEEEEEEcHHHHHHHHhhccCCCcEECHhHHHHHHHHHHH
Confidence            44322 111  111  1223444443   3456677899999999999999764211      1122456666665544

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.60  E-value=1.1e-14  Score=133.70  Aligned_cols=131  Identities=13%  Similarity=0.167  Sum_probs=90.7

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcce-eeecCC------CCH---HHHHHHHHHHHhCCccee-----eEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPT-GFIDES------EEI---FKGAVREVKEETGVDTEF-----VEVI  233 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPG-G~ve~G------Es~---~eAAiREv~EETGi~~~~-----~~~l  233 (340)
                      .++.++++|.+|+|||+||...+..++|.|++|+ |++++|      |++   .+||+||++||||+.+..     +..+
T Consensus        71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l  150 (246)
T 2pny_A           71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFM  150 (246)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEE
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEE
Confidence            4578888998899999999766667899999995 999999      887   999999999999998652     3455


Q ss_pred             EEEee-ccC--CCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC------CCCchHHHHHHHHHHHH
Q 019517          234 AFRHA-HNV--AFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI------QGDCMFKKVIDICIARL  302 (340)
Q Consensus       234 ~~~~~-~~~--~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~------~~~~~~~~il~~~l~~l  302 (340)
                      +.+.. .+.  ...  ....+|++..   ...+.++++|+.+++|++++++.++...      .-...++.+++.++...
T Consensus       151 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp~~~~i~~~~l~~w  227 (246)
T 2pny_A          151 TIYHHKAKSDRIWGEHEICYLLLVRK---NVTLNPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERFLYRW  227 (246)
T ss_dssp             EEEEEEEESSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCHHHHHHHHHTHHHH
T ss_pred             EEEEEEecCCCceeeeEEEEEEEEEE---CCCCCCChHHeeEEEEEeHHHHHHHHHhccCCCceECHhHHHHHHHHHHHH
Confidence            43322 111  111  1223444443   3456677899999999999999764211      11224666776666544

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.54  E-value=6.8e-15  Score=131.92  Aligned_cols=103  Identities=25%  Similarity=0.304  Sum_probs=74.0

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCC-CHHHHHHHHHHHHhCCcceeeE-----EEEEEeeccCCCc
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGVDTEFVE-----VIAFRHAHNVAFQ  244 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGi~~~~~~-----~l~~~~~~~~~~~  244 (340)
                      +.+++++.+++|||++|      .+|.|+||||++|+|| ++.+||+||++||||+.+....     .++....... ..
T Consensus        47 vv~~i~~~~~~vLl~~r------~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~  119 (212)
T 1u20_A           47 KLFDRVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QK  119 (212)
T ss_dssp             EETTTEECCEEEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SC
T ss_pred             EEEEEEecCCEEEEEEe------CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-Cc
Confidence            44455677789999887      3689999999999999 9999999999999999987543     3443332222 34


Q ss_pred             eEEEEEEEEEecCCCcc----------cCCcCceeeEEEEeccccccC
Q 019517          245 KSDLFFICMLKPLSTEI----------KVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~~----------~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ...++|+|....  +.+          ..++.|..++.|+|++++.+.
T Consensus       120 ~~~~~f~~~~~~--~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          120 CVTHFYIKELKL--EEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             EEEEEEEEECCH--HHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             EEEEEEEEEecC--CCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence            455666666421  211          124568889999999999764

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.51  E-value=3.6e-13  Score=126.53  Aligned_cols=117  Identities=14%  Similarity=0.200  Sum_probs=75.8

Q ss_pred             eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc------------eeeEEE---E---EEeeccCC
Q 019517          181 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT------------EFVEVI---A---FRHAHNVA  242 (340)
Q Consensus       181 ~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~------------~~~~~l---~---~~~~~~~~  242 (340)
                      +|||++|.     ..|.|.+|||++++||++.+||+||++||||+.+            ....++   +   +.......
T Consensus       140 ~vLl~~r~-----~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dp  214 (292)
T 1q33_A          140 QFVAIKRK-----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP  214 (292)
T ss_dssp             EEEEEECT-----TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT
T ss_pred             EEEEEEec-----CCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCC
Confidence            69999986     2489999999999999999999999999999983            111111   0   11111111


Q ss_pred             -C----ceEEEEEEEEEec---CCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcccC
Q 019517          243 -F----QKSDLFFICMLKP---LSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYC  307 (340)
Q Consensus       243 -~----~~~~~~f~~~~~~---~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y~  307 (340)
                       .    ....++|.+....   ........++|+.+++|++++++..+..   ++  +.+++.++++++..|.
T Consensus       215 r~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L~~---~h--~~il~~~~~~~~a~~~  282 (292)
T 1q33_A          215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYA---SH--SQFIKLVAEKRDAHWS  282 (292)
T ss_dssp             TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCST---TH--HHHHHHHHHHHTCCCC
T ss_pred             CCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcccCH---hH--HHHHHHHHHHhcCccc
Confidence             1    1223444444321   1111123467899999999999987532   33  7888888887765543

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.51  E-value=4.4e-13  Score=126.14  Aligned_cols=180  Identities=16%  Similarity=0.151  Sum_probs=110.2

Q ss_pred             CcEEEcCCCCCCChhHHHHHHHHHHHHHHhcCceeEEEecCCccccchHHHHhccccccccCcccccccccccCCCCCCC
Q 019517           83 DGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLP  162 (340)
Q Consensus        83 ~g~~v~~~~~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp  162 (340)
                      ++|++.+  ...+.++=...|+..+..|+..+.      ++.-..++.++....+      .+....+    +  +...+
T Consensus        53 ~~v~l~~--~~~~~~~rt~~~~~~~~~~~~~g~------~~gwr~E~~~V~~~~~------~~~~~~~----e--R~~~~  112 (300)
T 3dup_A           53 DAVLLSA--SLRTPQSRTRAVADVVDRLADEGV------VPAPRGELYRVNQSWG------EPTLMLL----D--RAVVP  112 (300)
T ss_dssp             SEEEECT--TCCSHHHHHHHHHHHHHHHHHTTS------SCCCCSCEEEECSSTT------SCCCEEE----E--GGGTG
T ss_pred             CEEEEec--CCCCHHHHHHHHHHHHHHHHHcCC------CCccccccEEeecCCC------CeeeEEE----E--hhhcc
Confidence            4566654  234778888999999999999873      1111111111110000      0000000    0  00111


Q ss_pred             CCCcceeEEEEEEEeCCc---eEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcceee---EEEEE
Q 019517          163 GNATHQVGVGGFVINDNN---EVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFV---EVIAF  235 (340)
Q Consensus       163 ~~~~~~v~V~~lv~~~~~---~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~~---~~l~~  235 (340)
                      .......+|.+.+++.++   ++||.||...+..++|.|+ .|||++++||++.+||+||+.||+||.+...   ..++.
T Consensus       113 ~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~  192 (300)
T 3dup_A          113 TFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGA  192 (300)
T ss_dssp             GGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEE
T ss_pred             ccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccce
Confidence            122234568888888776   9999999888888999995 8999999999999999999999999987532   22222


Q ss_pred             Eee-ccCCCc-eEEEEEEEEEe-cCCCcccCCcCceeeEEEEeccccccC
Q 019517          236 RHA-HNVAFQ-KSDLFFICMLK-PLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       236 ~~~-~~~~~~-~~~~~f~~~~~-~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ... .....+ ...+.|++.+. +....+.++++|+.+++|++++|+.++
T Consensus       193 i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~  242 (300)
T 3dup_A          193 ITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA  242 (300)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHH
T ss_pred             EEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHH
Confidence            111 111111 12233333332 222344568899999999999999764

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.36  E-value=5.3e-13  Score=120.19  Aligned_cols=92  Identities=26%  Similarity=0.394  Sum_probs=64.2

Q ss_pred             eEEEEEeccCCCCCCCceEcceeeecCCC-CHHHHHHHHHHHHhCCccee--eEEEEEEeeccC-CCceEEEEEEEEEec
Q 019517          181 EVLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGVDTEF--VEVIAFRHAHNV-AFQKSDLFFICMLKP  256 (340)
Q Consensus       181 ~VLLvqr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGi~~~~--~~~l~~~~~~~~-~~~~~~~~f~~~~~~  256 (340)
                      ++||+.|.      ++.|++|||++|+|| ++.+||+||++||||+.+..  +..+......+. ......++|++.+..
T Consensus        66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~  139 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL  139 (217)
T ss_dssp             EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred             cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence            56666553      578999999999999 99999999999999999873  222222222222 224556677776532


Q ss_pred             CCCcc----------cCCcCceeeEEEEeccccc
Q 019517          257 LSTEI----------KVDDLEIKGAKWMPFMEFV  280 (340)
Q Consensus       257 ~~~~~----------~~~~~E~~~~~Wv~leel~  280 (340)
                        +..          ..++.|..++.|+|++++.
T Consensus       140 --~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          140 --EELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             --HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             --ccceecccccccccccCCceeeEEEEEHHHhh
Confidence              111          2235788999999999987

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.35  E-value=4.7e-12  Score=115.10  Aligned_cols=112  Identities=26%  Similarity=0.316  Sum_probs=74.6

Q ss_pred             eeEEEEEEEeC--Cc--eEEEEEeccCCCCCCCceEcceeeecCCCC--------------------HHHHHHHHHHHHh
Q 019517          168 QVGVGGFVIND--NN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEE--------------------IFKGAVREVKEET  223 (340)
Q Consensus       168 ~v~V~~lv~~~--~~--~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs--------------------~~eAAiREv~EET  223 (340)
                      +.++.++++++  ++  +|||++|.......+|.|.||||++|+||+                    +..||+||++|||
T Consensus         8 r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~   87 (232)
T 3qsj_A            8 RKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEI   87 (232)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHh
Confidence            45566666653  23  899999986555568999999999999987                    5899999999999


Q ss_pred             CCcceee------------------------------------------EEEEEEeeccCCCc-eEEEEEEEEEecCCCc
Q 019517          224 GVDTEFV------------------------------------------EVIAFRHAHNVAFQ-KSDLFFICMLKPLSTE  260 (340)
Q Consensus       224 Gi~~~~~------------------------------------------~~l~~~~~~~~~~~-~~~~~f~~~~~~~~~~  260 (340)
                      ||.+...                                          ..++.......... ....||++.+. ....
T Consensus        88 Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lp-q~~~  166 (232)
T 3qsj_A           88 GWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQ-HLGE  166 (232)
T ss_dssp             SCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECS-SCCC
T ss_pred             CceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECC-CCCC
Confidence            9975321                                          11111111111112 23355665553 1111


Q ss_pred             ccCCcCceeeEEEEeccccc
Q 019517          261 IKVDDLEIKGAKWMPFMEFV  280 (340)
Q Consensus       261 ~~~~~~E~~~~~Wv~leel~  280 (340)
                      +..++.|+.++.|++++|+.
T Consensus       167 v~~d~~E~~~~~W~~p~eal  186 (232)
T 3qsj_A          167 PRLHGAELDAALWTPARDML  186 (232)
T ss_dssp             CCCCSSSEEEEEEEEHHHHH
T ss_pred             CCCCCCceEEEEEEcHHHHH
Confidence            24578999999999999995

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.24  E-value=2.9e-11  Score=114.92  Aligned_cols=115  Identities=7%  Similarity=0.126  Sum_probs=83.8

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHh-CCcceeeEEEEEEeeccCCCce
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET-GVDTEFVEVIAFRHAHNVAFQK  245 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EET-Gi~~~~~~~l~~~~~~~~~~~~  245 (340)
                      +.+.|++++.+ +|+|||+  .     ..| |.+|||.++.+  ..++|+||++||| |++++...+++.+....  .+.
T Consensus       182 p~~~vgaii~~-~g~vLL~--~-----~~G-W~LPG~~~~~~--~~~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~~~  248 (321)
T 3rh7_A          182 GEIRLGAVLEQ-QGAVFLA--G-----NET-LSLPNCTVEGG--DPARTLAAYLEQLTGLNVTIGFLYSVYEDKS--DGR  248 (321)
T ss_dssp             SCEEEEEEEES-SSCEEEB--C-----SSE-EBCCEEEESSS--CHHHHHHHHHHHHHSSCEEEEEEEEEEECTT--TCC
T ss_pred             CcceEEEEEEE-CCEEEEe--e-----CCC-ccCCcccCCCC--hhHHHHHHHHHHhcCCEEeeceEEEEEEcCC--Cce
Confidence            34767777764 6899999  2     357 99998866544  4469999999997 99999888888876543  234


Q ss_pred             EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517          246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~  305 (340)
                      ..++|.|...  +++       ..+++|++++|++.+.+..+  -.+.+++.+++..+..
T Consensus       249 ~~i~f~~~~~--~g~-------~~e~~~f~~~elp~~~~~~~--~~~~~L~~y~~e~~~g  297 (321)
T 3rh7_A          249 QNIVYHALAS--DGA-------PRQGRFLRPAELAAAKFSSS--ATADIINRFVLESSIG  297 (321)
T ss_dssp             EEEEEEEEEC--SSC-------CSSSEEECHHHHTTCEESSH--HHHHHHHHHHHTTSCS
T ss_pred             EEEEEEEEeC--CCC-------eeeeEEECHHHCCCcccCCH--HHHHHHHHHHHHhhcC
Confidence            5678888763  222       26789999999998866544  4577887777655443

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.89  E-value=1.7e-09  Score=94.51  Aligned_cols=84  Identities=18%  Similarity=0.273  Sum_probs=55.1

Q ss_pred             CCCceEcceeeecCCC-CHHHHHHHHHHHHhCC-cceeeEEEEEEeeccCCCceEEEEEEEEEecCCCccc--------C
Q 019517          194 FAGLWKLPTGFIDESE-EIFKGAVREVKEETGV-DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIK--------V  263 (340)
Q Consensus       194 ~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGi-~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--------~  263 (340)
                      ..|.|+||||+||+|| ++++|+.||+.||+|+ .+....++......+. ......+|.|....  +++.        .
T Consensus        52 ~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl~~--Ge~~~lE~~A~~A  128 (214)
T 3kvh_A           52 FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQLTL--EQLHAVEISAVHS  128 (214)
T ss_dssp             TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEECCH--HHHHHHHHHHHTS
T ss_pred             eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEeeC--CccchhhhcccCC
Confidence            4689999999999999 9999999999999997 4655555544332222 34555677776531  2111        1


Q ss_pred             --CcCceeeEEEEeccccc
Q 019517          264 --DDLEIKGAKWMPFMEFV  280 (340)
Q Consensus       264 --~~~E~~~~~Wv~leel~  280 (340)
                        -..|.....-+|+=.+.
T Consensus       129 ~d~G~EvlGlvRVPlytl~  147 (214)
T 3kvh_A          129 RDHGLEVLGLVRVPLYTQK  147 (214)
T ss_dssp             TTBTTTEEEEEEECCCBCT
T ss_pred             cccCceecceEEeeeEEec
Confidence              24677778888886654

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.80  E-value=1.4e-08  Score=89.65  Aligned_cols=62  Identities=27%  Similarity=0.382  Sum_probs=46.9

Q ss_pred             eEEEEEEE-eCCc--eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhC------CcceeeEEEEEE
Q 019517          169 VGVGGFVI-NDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG------VDTEFVEVIAFR  236 (340)
Q Consensus       169 v~V~~lv~-~~~~--~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG------i~~~~~~~l~~~  236 (340)
                      .+|.++++ ++.+  +|||+|+.      .+.|.+|||.+|+||+..+|+.||+.||+|      ...+..+.++..
T Consensus        59 ~sV~avil~~~~~~phVLLlq~~------~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~w  129 (208)
T 3bho_A           59 RTVEGVLIVHEHRLPHVLLLQLG------TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNW  129 (208)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEE------TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEE
T ss_pred             eEEEEEEEEcCCCCcEEEEEEcC------CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEE
Confidence            44554444 4444  79999974      358999999999999999999999999999      455555677653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-20
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	9e-18
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	2e-17
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	3e-15
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-14
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	1e-13
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	3e-13
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	1e-12
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	2e-12
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	4e-12
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	8e-12
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	2e-11
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	3e-11
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	4e-10
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	6e-10
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	8e-10
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	6e-09
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	2e-08
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	4e-08
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	6e-08
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	2e-07
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-07
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	3e-07
d1mqea_	202	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobac	7e-07
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-05

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 84.8 bits (209), Expect = 1e-20
 Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 3/144 (2%)

Query: 166 THQVGVGGFVINDNNEVLVVQEKY--CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 223
                 G  ++N+  ++L+VQEK    +P  AGLW +P+G +++ E     AVRE  EET
Sbjct: 10  VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEET 69

Query: 224 GVDTEFVEVIA-FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282
           G+    V+ +  +              ++   +P  T       EI  A ++   +F + 
Sbjct: 70  GLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQL 129

Query: 283 PLIQGDCMFKKVIDICIARLRKRY 306
                  M++  +    A   K +
Sbjct: 130 YAAGQIRMYQTKLFYADALREKGF 153

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 76.2 bits (187), Expect = 9e-18
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 12/135 (8%)

Query: 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227
           ++G GG V N   EVL+++++       G W  P G  +  E + + AVREV EETGV  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRA 55

Query: 228 EFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287
           E +  +      N    + ++ +  M        ++++  + GA W    E         
Sbjct: 56  EVLLPLYPTRYVNPKGVEREVHWFLM--RGEGAPRLEE-GMTGAGWFSPEEARALLAFPE 112

Query: 288 DCMFKKVIDICIARL 302
           D     ++++ + RL
Sbjct: 113 D---LGLLEVALERL 124

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 76.0 bits (186), Expect = 2e-17
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 10/152 (6%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
           V V   VI  +++ L+V+E       A     P G ++  E I +   REV EETG    
Sbjct: 4   VTVAA-VIEQDDKYLLVEEI--PRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFL 60

Query: 229 FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLIQG 287
              +    H    +   + L F    + +S +  +  D  I  A W    E   +  +  
Sbjct: 61  PEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHR 120

Query: 288 DCMFKKVIDICIARLRKRYCGLYPHQLVSAFD 319
             +  + I+   A  R      YP  ++  +D
Sbjct: 121 TPLVMQCIEDYHAGKR------YPLDILQYYD 146

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 70.2 bits (171), Expect = 3e-15
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 171 VGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
            G  +++    + ++V+    +      W  P G ID+ E     A+REV EETG D   
Sbjct: 5   RGAIMLDMSMQQCVLVKGWKAS----SGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 60

Query: 230 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDC 289
                      +  Q   L+ I  +   +        EI   +W   M+       +   
Sbjct: 61  RINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQT 120

Query: 290 MFKKVIDIC--IARLRK 304
           M  K   +   +A L+K
Sbjct: 121 MKNKFYMVIPFLAPLKK 137

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 67.6 bits (164), Expect = 2e-14
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
           V   V+ +N +VL+V+ K       G++  P G ++ +E   +   RE +EETG+  E +
Sbjct: 3   VTSGVLVENGKVLLVKHKR-----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57

Query: 231 EVIAFRHAHNVAFQKSDLFFICMLKPLSTE----------IKVDDLEIKGAKWMPFMEFV 280
                    N   +   L  +  +     E          +K    ++K  +W+   E  
Sbjct: 58  GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREID 117

Query: 281 KQPLIQGDCMFKKVIDICIARLRKR 305
           +          +KV+ + ++ L + 
Sbjct: 118 RIETFPNV---RKVVSLALSTLYRL 139

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 65.6 bits (159), Expect = 1e-13
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225
           T  V +   V N   E L+ +    N    G W +P G + + E +     R    E G+
Sbjct: 16  TPLVSLDFIVENSRGEFLLGKRT--NRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGL 73

Query: 226 D---TEFVEVIAFRHAHNVAFQKSD-----LFFICMLKPLSTEIKVDDLEIKGAKWMPFM 277
               T       ++H ++  F  +D     +      +    E+ + D +    +W+   
Sbjct: 74  RLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSD 133

Query: 278 EFVKQPLI 285
             +    +
Sbjct: 134 ALLASDNV 141

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 11/139 (7%)

Query: 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225
             +      V    N  +V+ +        G + LP G I+ +E   +   REV EE G+
Sbjct: 15  QTRYAAYIIVSKPENNTMVLVQAP-----NGAYFLPGGEIEGTETKEEAIHREVLEELGI 69

Query: 226 DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDL---EIKGAKWMPFMEFVKQ 282
             E    +     +  +  +   ++      ++   +             W+   E V+ 
Sbjct: 70  SVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRL 129

Query: 283 PLIQGDCMFKKVIDICIAR 301
                    +  ++  +A 
Sbjct: 130 LKRGSH---RWAVEKWLAA 145

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 1e-12
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 175 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 234
           ++     VL+  +K      AG W    G + E E I  GA RE++EE+G+  + +  + 
Sbjct: 11  LVLQPQRVLLGMKK--RGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVG 68

Query: 235 FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 288
                     + +L  + +    S +    + +     W    +   + +   D
Sbjct: 69  QIVFE--FVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDD 120

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
            +     F      EVL+V            W +P G ++  EE    AVREV EE GV 
Sbjct: 12  KRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVK 67

Query: 227 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
                ++          +     ++ ++  +  + +      +  +W    + +K
Sbjct: 68  GTLGRLVGIFENQE--RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIK 120

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 4e-12
 Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 12/139 (8%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
           +   V N+  E L++Q           W  P G ++  E+  + A+R  +EE G++   +
Sbjct: 20  LIPKVDNNAIEFLLLQASDGI----HHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 231 EVIAFRHAHNVAF----QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286
            +I               K+ ++++  +K    EI++   E +  +W+   E  +    +
Sbjct: 76  TIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYRWLGLEEACQLAQFK 134

Query: 287 GDCMFKKVIDICIARLRKR 305
                K  +      L   
Sbjct: 135 EM---KAALQEGHQFLCSI 150

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 59.7 bits (144), Expect = 8e-12
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 175 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 234
            I  ++ +L+ Q         G+  +  GF++  E + +   REV EE+G+  + +  + 
Sbjct: 9   AIRRDDSILLAQHTRHRN---GVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVT 65

Query: 235 FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKV 294
            +           L    M +  S +I +D  E+  A W  + +    P      + +++
Sbjct: 66  SQPWP----FPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPP--PGTVARRL 119

Query: 295 IDICIARLRKRY 306
           I+  +A  R  Y
Sbjct: 120 IEDTVAMCRAEY 131

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 60.2 bits (145), Expect = 2e-11
 Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 13/150 (8%)

Query: 135 KEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVI-----NDNNEVLVVQEKY 189
           K  ++   +  E+L   Y        LP      + V   ++      D  +VL++Q K 
Sbjct: 9   KNYYERQASLAEFLT-WYH----QQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRK- 62

Query: 190 CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-FQKSDL 248
               F   W LP GF++ +E      +RE KEETGV      +             +  +
Sbjct: 63  -GHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWV 121

Query: 249 FFICMLKPLSTEIKVDDLEIKGAKWMPFME 278
             +  L  +  E  +   + K   W     
Sbjct: 122 VTVSYLAFIGEEPLIAGDDAKEVHWFNLER 151

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 8/148 (5%)

Query: 174 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 233
            + +   + +V+Q +         +  P G ++  E   +  +RE+ EETG+    ++  
Sbjct: 14  LIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT---IQNP 70

Query: 234 AFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKK 293
                 N        + +   K       +   E     W+   +     L         
Sbjct: 71  QLVGIKNWPLDTGGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDM---LP 127

Query: 294 VIDICIARLRKRYCGLYPHQLVSAFDGQ 321
           ++++  A  +  +   YP +    ++ +
Sbjct: 128 LMEMMEAPDKSEF--FYPRRTEDDWEKK 153

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
           H+  V    + +   + V Q            ++P G I+  E+  + A RE+ E+TG+ 
Sbjct: 23  HKPAVAVIALREGRMLFVRQ--MRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 80

Query: 227 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
            +   + ++  +     +K+ +F    LK    E   D+ E     WM   E ++
Sbjct: 81  GDLTYLFSYFVSPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALE 133

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 54.5 bits (130), Expect = 6e-10
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230
             G + N+NNE+ + +    +   A   + P G I+  E   +  VRE++EE G+  +  
Sbjct: 7   AVGIIRNENNEIFITRRAA-DAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65

Query: 231 EVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCM 290
            +             +  F++        E +    E +  +WM  +          +  
Sbjct: 66  SLFEKLEYEFPDRHITLWFWLVE----RWEGEPWGKEGQPGEWMSLVGLNADDFPPAN-- 119

Query: 291 FKKVIDICIARLRK 304
            + VI     +L++
Sbjct: 120 -EPVIA----KLKR 128

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 55.2 bits (132), Expect = 8e-10
 Identities = 20/113 (17%), Positives = 36/113 (31%)

Query: 174 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 233
                +  VL+       P   G    P G +D  E   + A+RE +EE  +D   V ++
Sbjct: 39  LTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLL 98

Query: 234 AFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286
                            +  + P + +      E+         E    PL++
Sbjct: 99  GELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLVR 151

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 52.2 bits (124), Expect = 6e-09
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 4/115 (3%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGL-WKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229
              ++ N   ++LV +      A+ G+      G     E      +R  + E GV+   
Sbjct: 5   FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 64

Query: 230 VEVIAFRHAHNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281
            E I     +          +          ++ ++++D E+   +W    + + 
Sbjct: 65  PESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLH 119

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 162 PGNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVRE 218
             N T  +G+   +         +L+++         G W L  GF+ + E +   A R 
Sbjct: 4   SSNPTFYLGIDCIIFGFNEGEISLLLLKRN--FEPAMGEWSLMGGFVQKDESVDDAAKRV 61

Query: 219 VKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 278
           + E TG++  ++E +    A +    +  +           E   + ++   A W+   E
Sbjct: 62  LAELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINE 121

Query: 279 FVKQPLIQGDCMFKKVIDICIARLRKR 305
               P +  D    +++D     ++++
Sbjct: 122 L---PALIFD--HPEMVDKAREMMKQK 143

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 25/135 (18%)

Query: 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 228
             VG  ++N++ ++               W++P G IDE E+    A+RE++EETGV + 
Sbjct: 15  RNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA 70

Query: 229 FVEVIA----------------FRHAHNVAFQKSDLFFICMLKPLSTEIKV-----DDLE 267
            V                         +    ++  +F+        EI +     +  E
Sbjct: 71  EVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPE 130

Query: 268 IKGAKWMPFMEFVKQ 282
                W+   + +  
Sbjct: 131 FGEWSWVTPEQLIDL 145

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 19/117 (16%)

Query: 175 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEE-IFKGAVREVKEETGVDTEFVEVI 233
            +     +L++        F G    P GF+D  +  + +G  RE++EE G     VEV 
Sbjct: 38  RVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVT 91

Query: 234 AF------------RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 278
                         +   +   ++  L  I  ++  +   K   LE+ G   +P   
Sbjct: 92  EDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYT 148

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 4/115 (3%)

Query: 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTE 228
                V +   ++LV +         G+      G +   E++ + A RE +EE G+   
Sbjct: 32  ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 91

Query: 229 FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 283
                   +  +   +     F C+         + + E+    W+   E   + 
Sbjct: 92  PFAEHGQFYFEDKNCRVWGALFSCV---SHGPFALQEDEVSEVCWLTPEEITARC 143

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 2/111 (1%)

Query: 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEF 229
           V  F+ N   ++ + +       F     +   G +   E   +   RE +EE  V+ + 
Sbjct: 31  VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 90

Query: 230 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV 280
           +               S    +  L+        +  +I G +W+     +
Sbjct: 91  LSWRPLASFSPFQTTLSSFMCVYELRS-DATPIFNPNDISGGEWLTPEHLL 140

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 172 GGFVINDNN-----EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226
           G  +++  +     + + ++ K C     G W +P G +D  E+I     RE  EE    
Sbjct: 126 GNKIMHPVSGKHILQFVAIKRKDC-----GEWAIPGGMVDPGEKISATLKREFGEEALNS 180

Query: 227 TEFVEVIAFRHAHNV 241
            +            +
Sbjct: 181 LQKTSAEKREIEEKL 195

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.0 bits (111), Expect = 7e-07
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 155 PDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKG 214
           P G  V      H   V    ++DN  + +V + Y +     LW+LP G +D + E    
Sbjct: 25  PGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQ-YRHTYGRRLWELPAGLLDVAGEPPHL 83

Query: 215 AV-REVKEETGVDTEFVEVIAFRH-AHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAK 272
              RE++EE G+     +V+     A   + +   ++    L+ +       +       
Sbjct: 84  TAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMG 143

Query: 273 WMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGL 309
           W P  E  ++ +++G+ +    I   +  +     G 
Sbjct: 144 WYPIAEAARR-VLRGEIVNSIAI-AGVLAVHAVTTGF 178

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 169 VGVGGFVI----NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 224
           V   G VI        E L++Q  Y        W  P G +D  E+ ++ A+RE KEE  
Sbjct: 2   VKAAGLVIYRKLAGKIEFLLLQASYPP----HHWTPPKGHVDPGEDEWQAAIRETKEEAN 57

Query: 225 VDTEFVEVIAFRHAHNV--AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282
           +  E + +    H      A  K       + K  + +      E +  KW    + +K 
Sbjct: 58  ITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKI 117

Query: 283 PLIQGDCMFKKVIDICIARL 302
                      ++    A L
Sbjct: 118 ADYAEM---GSLLRKFSAFL 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.87
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.87
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.86
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.85
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.85
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.83
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.83
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.82
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.81
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.81
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.81
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.81
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.81
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.8
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.78
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.78
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.78
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.78
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.78
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.78
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.76
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.75
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.75
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.75
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.68
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.65
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.59
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.45
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.31
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.3

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.87  E-value=4.6e-22  Score=167.07  Aligned_cols=134  Identities=17%  Similarity=0.345  Sum_probs=100.8

Q ss_pred             CCCcceeEEEEEEEe--C-CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec
Q 019517          163 GNATHQVGVGGFVIN--D-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH  239 (340)
Q Consensus       163 ~~~~~~v~V~~lv~~--~-~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~  239 (340)
                      .++...++|.++|+.  + +.+|||++|+..  +..|.|.+|||++++||++.+||+||++||||+++....+++.+...
T Consensus         5 ~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~   82 (147)
T d2fb1a2           5 SNPTFYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI   82 (147)
T ss_dssp             TSCCEEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred             CCCCcceEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCC
Confidence            345567888888763  3 347999998643  46799999999999999999999999999999999888888876543


Q ss_pred             cCCC-c-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517          240 NVAF-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       240 ~~~~-~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~  305 (340)
                      .... . ...++|+|....  .......+|..+++|+++++++.+++   +|  ++|++.++++++.+
T Consensus        83 ~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~~lp~laf---DH--~~ii~~a~~~lr~k  143 (147)
T d2fb1a2          83 DRDPGERVVSIAYYALINI--NEYDRELVQKHNAYWVNINELPALIF---DH--PEMVDKAREMMKQK  143 (147)
T ss_dssp             TSSSSSCEEEEEEEEECCT--TSSCHHHHHHTTEEEEETTSCCCBST---TH--HHHHHHHHHHHHHH
T ss_pred             cccCCCceEEEEEEEEecC--CcccCCCcchhheEEecHHhchhccc---CH--HHHHHHHHHHHHHH
Confidence            3222 2 334566666533  23333456788999999999998776   44  78999999988765

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.3e-21  Score=159.39  Aligned_cols=128  Identities=20%  Similarity=0.291  Sum_probs=99.3

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      ++|.+++.+ ++++||++++. .  .+|.|.+|||++|+|||+++||+||++||||+++.....++.....  ......+
T Consensus         4 paViv~i~~-~~~vLL~~~~~-~--~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~--~~~~~~~   77 (131)
T d1vk6a2           4 PCIIVAIRR-DDSILLAQHTR-H--RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWP--FPQSLMT   77 (131)
T ss_dssp             EEEEEEEEE-TTEEEEEEETT-T--CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEE--TTEEEEE
T ss_pred             cEEEEEEEe-CCEEEEEEecc-C--CCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccC--cCceEEE
Confidence            456555554 57999998863 2  3689999999999999999999999999999999888777654332  2234556


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhccc
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY  306 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y  306 (340)
                      +|++...  .+++.+++.|+.+++|++++|++.++....  +.+++++.+++..+..|
T Consensus        78 ~f~~~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~~--i~r~li~~~l~~~r~~~  131 (131)
T d1vk6a2          78 AFMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPGT--VARRLIEDTVAMCRAEY  131 (131)
T ss_dssp             EEEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTTS--HHHHHHHHHHHHHHHCC
T ss_pred             EEEEEEc--CCcccCCCccEEEEEEEcHHHHhhCCCChH--HHHHHHHHHHHHHHhcC
Confidence            6666653  355677789999999999999998876543  67889999999887654

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.9e-21  Score=158.65  Aligned_cols=122  Identities=26%  Similarity=0.426  Sum_probs=91.4

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-CceE
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-FQKS  246 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~-~~~~  246 (340)
                      .+||+++|+|++++|||++++      .|.|.+|||++++||++.+||+||++||||+++.....++........ ....
T Consensus         2 ~v~agavv~~~~~~vLl~~~~------~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~   75 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVERE   75 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECT------TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEE
T ss_pred             EEEEEEEEEECCCEEEEEEcC------CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeEEE
Confidence            488999999999999999874      468999999999999999999999999999999888777654333222 2233


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHH
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  302 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l  302 (340)
                      .++|++...   +... .++|+.+++|++++++.++...+.   .+.+++.+++++
T Consensus        76 ~~~~~~~~~---~~~~-~~~e~~~~~W~~~~e~~~~~~~~~---~~~il~~~~~~l  124 (126)
T d1vcda1          76 VHWFLMRGE---GAPR-LEEGMTGAGWFSPEEARALLAFPE---DLGLLEVALERL  124 (126)
T ss_dssp             EEEEEEEEE---SCCC-CCTTCCEEEEECHHHHHHHBCSHH---HHHHHHHHHHHS
T ss_pred             EEEEEEEEc---CCCC-CCccceEEEEEEHHHHhhccCChH---HHHHHHHHHHhC
Confidence            445555543   2222 246888999999999988754332   367777777654

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.85  E-value=1.3e-20  Score=158.63  Aligned_cols=120  Identities=25%  Similarity=0.319  Sum_probs=88.2

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCC--CCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-CCC
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCN--PAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-VAF  243 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~--~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~-~~~  243 (340)
                      +..+++++++|++|+|||++|+..+  ....|.|.+|||++++||++.+||+||++||||+++....+++.+.... ...
T Consensus        11 ~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~~~~~   90 (158)
T d1sjya_          11 ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGV   90 (158)
T ss_dssp             CEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTSC
T ss_pred             ceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEECCCCC
Confidence            3456888888989999999996432  2356899999999999999999999999999999999888887654332 222


Q ss_pred             ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          244 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       244 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                      .....+|++...........+++|+.+++|++++|+.++....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~  133 (158)
T d1sjya_          91 LILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  133 (158)
T ss_dssp             EEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             EEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhCC
Confidence            2334455555543322233345799999999999998765443

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.85  E-value=8e-21  Score=157.84  Aligned_cols=127  Identities=20%  Similarity=0.205  Sum_probs=90.3

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      .++|+++|. .+|++||++|...  ...+.|.+|||++++||++.+||+||++||||+++.....++.........+...
T Consensus         3 ~v~va~ii~-~~~k~Llv~r~~~--~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (146)
T d2b0va1           3 NVTVAAVIE-QDDKYLLVEEIPR--GTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY   79 (146)
T ss_dssp             EEEEEEECE-ETTEEEEEEECSS--SSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred             eEEEEEEEE-eCCEEEEEEEecC--CCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEE
Confidence            366766665 4689999998643  3578899999999999999999999999999999988888776655544444333


Q ss_pred             --EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517          248 --LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  298 (340)
Q Consensus       248 --~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~  298 (340)
                        ++|.+...... .....++|+.+++|++++|+.+++.......+.+++..+
T Consensus        80 ~~~~~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~v~~~l~~y  131 (146)
T d2b0va1          80 LRFTFSGQVVSFD-PDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDY  131 (146)
T ss_dssp             EEEEEEEEEEEEC-TTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHH
T ss_pred             EEEEEEEEeecCC-CCCCCCcceeEEEEeeHHHHhhCccccCCHHHHHHHHHH
Confidence              33444433222 223346789999999999998876654433444444444

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.83  E-value=1.3e-20  Score=160.73  Aligned_cols=126  Identities=21%  Similarity=0.317  Sum_probs=88.4

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-----Eee---
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-----RHA---  238 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~-----~~~---  238 (340)
                      .+.+|+++|+|++++|||++|..    .+|.|.+|||+||+||++++||+||++||||+.+........     ...   
T Consensus        13 yR~~Vg~vI~n~~~~vLL~kR~~----~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   88 (165)
T d1jkna_          13 YRRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKV   88 (165)
T ss_dssp             EEEEEEEEEECTTSCEEEEEESS----STTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHH
T ss_pred             ccccEEEEEEeCCCEEEEEEEcC----CCCcccCccceEcCCCChhHHHHHHHHHhhcccccccccccccccccccccee
Confidence            47899999999999999999863    358999999999999999999999999999999876543321     100   


Q ss_pred             --------ccCCCceEEEEEEEEEecCCCcccC-----CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          239 --------HNVAFQKSDLFFICMLKPLSTEIKV-----DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       239 --------~~~~~~~~~~~f~~~~~~~~~~~~~-----~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                              ..........+|++........+..     ...|+.+++|+++++++++..++.    +.+++.+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i~~fk----~~v~~~~l~  159 (165)
T d1jkna_          89 REKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFK----KPVYKEVLS  159 (165)
T ss_dssp             HHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHSCGGG----HHHHHHHHH
T ss_pred             eceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhcchhh----HHHHHHHHH
Confidence                    0111223344555555433333332     234899999999999998765544    444444443

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=5.2e-21  Score=168.84  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=106.0

Q ss_pred             HHhcCceeE----EEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeCCceEEEE
Q 019517          110 WRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVV  185 (340)
Q Consensus       110 w~~~~~~~v----W~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~~~VLLv  185 (340)
                      |+..+++.|    |+++..+...+++   +....|+..                      .+..+|++++++++++|||+
T Consensus         1 ~~~l~s~~v~~~~~~~v~~d~v~~pd---G~~~~~~~v----------------------~~~~~V~vl~~~~~~~ilLv   55 (202)
T d1mqea_           1 FETISSETLHTGAIFALRRDQVRMPG---GGIVTREVV----------------------EHFGAVAIVAMDDNGNIPMV   55 (202)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEEC--------CEEEEEE----------------------EECCEEEEEECCTTSEEEEE
T ss_pred             CeEccEEEEEECCEEEEEEEEEECCC---CCEEEEEEE----------------------EcCCeEEEEEECCCCEEEEE
Confidence            566667766    9999999999998   444444333                      11246788888999999999


Q ss_pred             EeccCCCCCCCceEcceeeec-CCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCccc-C
Q 019517          186 QEKYCNPAFAGLWKLPTGFID-ESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIK-V  263 (340)
Q Consensus       186 qr~~~~~~~~g~W~lPGG~ve-~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~  263 (340)
                      ++. +++.+...|++|+|.+| +||++++||+||++||||+.++.+.+++.+.+.++......++|++.......... .
T Consensus        56 rq~-R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~~~~~fla~~~~~~~~~~~~  134 (202)
T d1mqea_          56 YQY-RHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAH  134 (202)
T ss_dssp             EEE-ETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC----
T ss_pred             Eec-ccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccCCcEEEEEEEEeccccCCCCCC
Confidence            884 66667778999999999 79999999999999999999999999988777766666555666665433222322 2


Q ss_pred             CcCceeeEEEEeccccccCCCC
Q 019517          264 DDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       264 ~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      +++|..++.|+|++|+.++...
T Consensus       135 ~eee~i~v~w~~~~e~~~~i~~  156 (202)
T d1mqea_         135 HEEADMTMGWYPIAEAARRVLR  156 (202)
T ss_dssp             ------CEEEEEHHHHHHHHTT
T ss_pred             CccceEEEEEEEHHHHHHHHHc
Confidence            3455668999999999887654

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=9.6e-20  Score=154.71  Aligned_cols=113  Identities=15%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      .+|.++++|++|+|||++|...+..++|.|++| ||++++||++.+||+||++|||||+......++.+...........
T Consensus        31 ~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~  110 (161)
T d2fkba1          31 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG  110 (161)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecCCcEEEE
Confidence            458889999999999999976666789999987 8999999999999999999999999877776665443333322333


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      .+|.+.   ..+++.++++|+.+++|++++|+.+++.
T Consensus       111 ~~~~~~---~~~~~~~~~~Ev~~~~w~~~~el~~~~~  144 (161)
T d2fkba1         111 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARCD  144 (161)
T ss_dssp             EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTGG
T ss_pred             EEEEEE---ECCCCcCChhHeeEEEEEeHHHHhhhhh
Confidence            344443   2456777889999999999999988653

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.2e-20  Score=164.44  Aligned_cols=151  Identities=15%  Similarity=0.138  Sum_probs=108.3

Q ss_pred             HHhcCceeE----EEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeCCceEEEE
Q 019517          110 WRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVV  185 (340)
Q Consensus       110 w~~~~~~~v----W~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~~~VLLv  185 (340)
                      |+..+++.|    |+++.....++++   +....|+....                    .+..+|.++... ++++||+
T Consensus         9 ~~il~~~~v~~~~~f~v~~~~v~~p~---G~~~~~~~~~~--------------------~~~~~v~vi~~~-~~~vlLv   64 (186)
T d1vhza_           9 PTILNVETVARSRLFTVESVDLEFSN---GVRRVYERMRP--------------------TNREAVMIVPIV-DDHLILI   64 (186)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEEECTT---SCEEEEEEECC--------------------CCCCEEEEEEEE-TTEEEEE
T ss_pred             CEEeeeEEEEeCCEEEEEEEEEEcCC---CCEEEEEEEEe--------------------CCCcEEEEEEcc-CCEEEEE
Confidence            444555555    8888888888887   33333332200                    111344444444 6789999


Q ss_pred             EeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcccCCc
Q 019517          186 QEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDD  265 (340)
Q Consensus       186 qr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  265 (340)
                      ++. +++.....|+||||++|+||++.+||+||++||||+.+..+.+++.....++.......+|++.... ......++
T Consensus        65 rq~-R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~~a~~~~-~~~~~~de  142 (186)
T d1vhza_          65 REY-AVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLY-PESLEGDE  142 (186)
T ss_dssp             EEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEE-ECCCCCCC
T ss_pred             Eee-ecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEEEEEEEecc-cccCCCCC
Confidence            874 6777788899999999999999999999999999999999998887777666655555555554322 23445677


Q ss_pred             CceeeEEEEeccccccCCCCC
Q 019517          266 LEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       266 ~E~~~~~Wv~leel~~~~~~~  286 (340)
                      +|..++.|+|++|+.++....
T Consensus       143 ~E~~~~~~~~~~e~~~~i~~g  163 (186)
T d1vhza_         143 PEPLPQVRWPLAHMMDLLEDP  163 (186)
T ss_dssp             SSCCCEEEEEGGGGGGGGGCT
T ss_pred             CcEEEEEEEeHHHHHHHHHcC
Confidence            889999999999999876543

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.81  E-value=2.1e-19  Score=158.40  Aligned_cols=139  Identities=22%  Similarity=0.312  Sum_probs=98.2

Q ss_pred             CCCCCCCcceeEEEEEEEe--CC---ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--E
Q 019517          159 CVLPGNATHQVGVGGFVIN--DN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--E  231 (340)
Q Consensus       159 ~~lp~~~~~~v~V~~lv~~--~~---~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~  231 (340)
                      +.++.|+.+.++|.++|+.  .+   .+|||++|+.  .++.|.|.+|||++++||++.+||+||++||||+.+...  .
T Consensus        28 ~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~--~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~  105 (202)
T d2fmla2          28 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKG--HPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE  105 (202)
T ss_dssp             SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECS--SSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred             ccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecC--CCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceee
Confidence            4567788888888877763  32   3799999963  346799999999999999999999999999999987543  3


Q ss_pred             EEEEEee-ccCCCc-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC-----------------------CCCC
Q 019517          232 VIAFRHA-HNVAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ-----------------------PLIQ  286 (340)
Q Consensus       232 ~l~~~~~-~~~~~~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~-----------------------~~~~  286 (340)
                      .+..+.. .....+ ...++|++..   .++.....+|+.+++|+++++++..                       .+.+
T Consensus       106 ~~~~~~~~~r~~~~~~i~~~~~~~~---~~~~~~~~~e~~~~~Wf~ld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LaF  182 (202)
T d2fmla2         106 QLHSFSRPDRDPRGWVVTVSYLAFI---GEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAF  182 (202)
T ss_dssp             EEEEECCTTSSTTSSEEEEEEEEEC---CCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCST
T ss_pred             eeeecccCCccccceEEEEEEEEEe---CCCCcCCCcceeeEEEEeHHHCcchhcccchhhhhhhhhhhhccccCCCccc
Confidence            3433322 222222 3344555543   2233345688999999999998642                       1222


Q ss_pred             CCchHHHHHHHHHHHHhcc
Q 019517          287 GDCMFKKVIDICIARLRKR  305 (340)
Q Consensus       287 ~~~~~~~il~~~l~~l~~~  305 (340)
                       ||  ..|+..|++++|.+
T Consensus       183 -DH--~~Ii~~Al~Rlr~k  198 (202)
T d2fmla2         183 -DH--SEIIIKAFNRVVDK  198 (202)
T ss_dssp             -TH--HHHHHHHHHHHHHH
T ss_pred             -CH--HHHHHHHHHHHHHh
Confidence             34  78999999999876

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=6.1e-20  Score=154.94  Aligned_cols=112  Identities=16%  Similarity=0.304  Sum_probs=83.7

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE--EeeccCCC--c
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF--RHAHNVAF--Q  244 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~--~~~~~~~~--~  244 (340)
                      +++++|+|++|++||+||...+..++|.|.+ |||++++||++.+||+||+.|||||++.....+..  ........  .
T Consensus         4 a~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~   83 (153)
T d1hzta_           4 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIV   83 (153)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCE
T ss_pred             EEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceecccccccccccccc
Confidence            5788999999999999997666678999987 99999999999999999999999999877665531  11111111  1


Q ss_pred             eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517          245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  282 (340)
Q Consensus       245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~  282 (340)
                      ...+++++... ....+.++++|+.+++|++++|+.+.
T Consensus        84 ~~~~~~~~~~~-~~~~~~~~~~Ev~~~~W~~~~el~~~  120 (153)
T d1hzta_          84 ENEVCPVFAAR-TTSALQINDDEVMDYQWCDLADVLHG  120 (153)
T ss_dssp             EEEECCEEEEE-BCSCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             ceeEEEEEEEe-eCCCccCChhheeEEEEeeHHHHHHH
Confidence            22222222222 34667778889999999999999764

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.2e-20  Score=154.06  Aligned_cols=112  Identities=19%  Similarity=0.283  Sum_probs=84.7

Q ss_pred             EEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEE
Q 019517          172 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFI  251 (340)
Q Consensus       172 ~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~  251 (340)
                      ++++++.+++|||+||.. .+..+|.|.||||++|+||++.+||+||++||||+.+....++..............++|.
T Consensus         8 v~ii~~~~~~vLl~~R~~-~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
T d1puna_           8 VGIIRNENNEIFITRRAA-DAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWL   86 (129)
T ss_dssp             EEECBCTTSCEEEBCCCS-SCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEecC-CCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccccceeEEEEE
Confidence            345677889999999863 3556899999999999999999999999999999999877776655544443333334444


Q ss_pred             EEEecCCCcccCCcCceeeEEEEeccccccCCCCCCC
Q 019517          252 CMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD  288 (340)
Q Consensus       252 ~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~  288 (340)
                      |.  ...+++  ...|+.+++|++++++.++++++.+
T Consensus        87 ~~--~~~~~~--~~~E~~~~~W~~~~el~~~~~~~~~  119 (129)
T d1puna_          87 VE--RWEGEP--WGKEGQPGEWMSLVGLNADDFPPAN  119 (129)
T ss_dssp             CC--CCSSCC--CTTSSSCCEEECGGGCCTTTSCGGG
T ss_pred             Ee--eccCcC--CCCccceEEEEEHHHcccCCCCcch
Confidence            43  233433  4568889999999999999887653

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2e-19  Score=151.81  Aligned_cols=116  Identities=17%  Similarity=0.159  Sum_probs=82.9

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      +++.+.++|. .+++|||++|+.  +.+.|.|.+|||++++||++.+||+||++||||+++....+++............
T Consensus         4 ~r~~~~v~i~-~~~~vLL~~r~~--~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d1irya_           4 SRLYTLVLVL-QPQRVLLGMKKR--GFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL   80 (156)
T ss_dssp             CEEEEEECEE-CSSEEEEEEESS--SSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCE
T ss_pred             cEEEEEEEEE-ECCEEEEEEecC--CCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCCEE
Confidence            4565555555 578999999863  3467999999999999999999999999999999988777776544333333333


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      ...+++......++  +.+.|..+++|+++++++.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~--~~~~ee~~~~W~~~~~l~~~~~~~~  119 (156)
T d1irya_          81 MDVHVFCTDSIQGT--PVESDEMRPCWFQLDQIPFKDMWPD  119 (156)
T ss_dssp             EEEEEECCCCBCSC--CCCCSSEEEEEEETTCCCSTTTCSS
T ss_pred             EEEEEEEEEeecCc--ccCCchhheEEeEHHHCCcCCCCcc
Confidence            33333333333333  3334446789999999999887765

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.5e-19  Score=152.67  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=84.0

Q ss_pred             eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeec-c----
Q 019517          168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAH-N----  240 (340)
Q Consensus       168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~--~~~l~~~~~~-~----  240 (340)
                      .++|+++|.|.+|+|||++|...  +++|.|.+|||++++||++.+||+||++||||+++..  ...++..... .    
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~--~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   95 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS   95 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSS--SSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTT
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCC--CCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEecccccc
Confidence            47888999999999999999743  4778999999999999999999999999999998753  2333322211 1    


Q ss_pred             -CCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517          241 -VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  286 (340)
Q Consensus       241 -~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~  286 (340)
                       .......+.+.+.+..........++|+.+++|++++|+.+++..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~~~  142 (160)
T d1ryaa_          96 GTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVH  142 (160)
T ss_dssp             BSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBC
T ss_pred             CCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcCcccc
Confidence             1112222333333333344455567899999999999998876544

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.78  E-value=8.1e-20  Score=153.33  Aligned_cols=108  Identities=22%  Similarity=0.271  Sum_probs=70.7

Q ss_pred             EEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 019517          171 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF  249 (340)
Q Consensus       171 V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~  249 (340)
                      +||+++|.+ ++|||+|+..    ..+.|.||||++++||++.+||+||++||||+++............... +....+
T Consensus         5 ~Gaii~~~~~~kvLLvk~~~----~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~-~~~~~~   79 (151)
T d2a6ta2           5 RGAIMLDMSMQQCVLVKGWK----ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIR-GQNVRL   79 (151)
T ss_dssp             EEEEEBCSSSSEEEEEEESS----TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEET-TEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEeC----CCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeeccc-CceEEE
Confidence            588888865 7899999852    4678999999999999999999999999999987643222111111111 122233


Q ss_pred             EEEEEecCCCcc-cCCcCceeeEEEEeccccccCC
Q 019517          250 FICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       250 f~~~~~~~~~~~-~~~~~E~~~~~Wv~leel~~~~  283 (340)
                      |++......... ..+.+|+.+++|++++|++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~  114 (151)
T d2a6ta2          80 YIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFK  114 (151)
T ss_dssp             EEECCCCTTCCCC------EEEEEEEEGGGSTTCC
T ss_pred             EEEEEeccCCcccccCCCccceEEEEEHHHhhhhh
Confidence            444332222222 2345799999999999998754

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=4e-19  Score=150.73  Aligned_cols=112  Identities=18%  Similarity=0.221  Sum_probs=79.5

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  248 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~  248 (340)
                      .+|++++++ ++++||+++. +++...+.|++|||++|+||++.+||+||++||||+.+. +..++.....++..+....
T Consensus        25 ~aV~vl~~~-~~~vlLv~q~-R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~-~~~l~~~~~~~g~~~~~~~  101 (158)
T d1v8ya_          25 PAVAVIALR-EGRMLFVRQM-RPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGD-LTYLFSYFVSPGFTDEKTH  101 (158)
T ss_dssp             CEEEEEEEE-TTEEEEEECC-BTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEE-EEEEEEEESCTTTBCCEEE
T ss_pred             CEEEEEEEE-CCEEEEEEee-ecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcce-eeeecceecCCCcceEEEE
Confidence            467777776 5799999984 677788899999999999999999999999999999875 4444444444555455555


Q ss_pred             EEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      +|++..... ....++++|..++.|++++|+.++..
T Consensus       102 ~f~a~~~~~-~~~~~d~~E~~ev~w~~~~e~~~~i~  136 (158)
T d1v8ya_         102 VFLAENLKE-VEAHPDEDEAIEVVWMRPEEALERHQ  136 (158)
T ss_dssp             EEEEEEEEE-CC--------CEEEEECHHHHHHHHH
T ss_pred             EEEEccccc-cccCCCCCeeEEEEEEEHHHHHHHHH
Confidence            566544322 34456677888999999999988644

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.78  E-value=7.5e-19  Score=147.95  Aligned_cols=114  Identities=12%  Similarity=0.148  Sum_probs=80.1

Q ss_pred             eEEEEEEEe-CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc-eE
Q 019517          169 VGVGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ-KS  246 (340)
Q Consensus       169 v~V~~lv~~-~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~-~~  246 (340)
                      ++..++|++ +++++||++|... ....+.|.+|||++++|||+.+||+||++||||+++....+++.......... ..
T Consensus         9 ~~~~~~i~~~~~~~lLl~~R~~~-~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~   87 (155)
T d2b06a1           9 LTNICLIEDLETQRVVMQYRAPE-NNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYI   87 (155)
T ss_dssp             EEEEEEEEETTTTEEEEEEEC------CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEE
T ss_pred             EEEEEEEEECCCCEEEEEEECCC-CCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCCeEE
Confidence            444556666 5568988888633 33446799999999999999999999999999999988888876554433322 22


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  287 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~  287 (340)
                      .++|.|.  ...+.  +...|..+++|+++++++++++...
T Consensus        88 ~~~~~~~--~~~~~--~~~~e~~~~~W~~~~el~~l~~~~~  124 (155)
T d2b06a1          88 VICYKAT--EFSGT--LQSSEEGEVSWVQKDQIPNLNLAYD  124 (155)
T ss_dssp             EEEEEEC--EEEEC--CCCBTTBEEEEEEGGGGGGSCBCTT
T ss_pred             EEEEEEE--ecCCc--cCCCchheEEEEEHHHhccCCCCch
Confidence            2333332  22233  3456778999999999999887765

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.78  E-value=6.3e-19  Score=149.66  Aligned_cols=114  Identities=14%  Similarity=0.229  Sum_probs=81.9

Q ss_pred             eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517          169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  247 (340)
Q Consensus       169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~  247 (340)
                      .+|+++++|++|++||.+|...+...+|.|.+| ||++++||++.+||+||++||||+++.....+..............
T Consensus        29 ~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~  108 (162)
T d2o5fa1          29 RVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSS  108 (162)
T ss_dssp             EEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSCSS
T ss_pred             EEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEeccccccceE
Confidence            458899999999999999876666789999887 9999999999999999999999999987766655444333322222


Q ss_pred             EEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517          248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  283 (340)
Q Consensus       248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~  283 (340)
                      .++++.+.. .+.+.++++|+.+++|++++|+.++.
T Consensus       109 ~~~~~~~~~-~~~~~~~~~Ev~~~~W~~~eel~~~~  143 (162)
T d2o5fa1         109 FMCVYELRS-DATPIFNPNDISGGEWLTPEHLLARI  143 (162)
T ss_dssp             EEEEEEEEC-SSCCCCCTTTCSEEEEECHHHHHHHH
T ss_pred             EEEEEEEec-CCCccCChhHeeEEEEeeHHHHHHHH
Confidence            223333322 35566778899999999999997653

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.78  E-value=1e-18  Score=143.12  Aligned_cols=125  Identities=22%  Similarity=0.337  Sum_probs=84.8

Q ss_pred             EEEEEEEe---CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec---cCCC
Q 019517          170 GVGGFVIN---DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH---NVAF  243 (340)
Q Consensus       170 ~V~~lv~~---~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~---~~~~  243 (340)
                      +++++|++   ++.++||++|++    .+|.|.+|||++|+||++.+||+||++||||+++.....+......   ....
T Consensus         4 aag~vv~~~~~~~~~~Ll~~r~~----~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   79 (137)
T d1ktga_           4 AAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG   79 (137)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETT
T ss_pred             EEEEEEEEEcCCCEEEEEEEEcC----CCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCc
Confidence            46666664   334789998863    3589999999999999999999999999999998776655322111   1111


Q ss_pred             -ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517          244 -QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  303 (340)
Q Consensus       244 -~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~  303 (340)
                       .....+|++... ....+.+ ..|+.+++|++++++.++....   -.+.+++.+.+.+.
T Consensus        80 ~~~~~~~~~~~~~-~~~~~~~-~~E~~~~~W~~~~e~~~~~~~~---~~~~~l~~~~~~L~  135 (137)
T d1ktga_          80 KPKSVKYWLAKLN-NPDDVQL-SHEHQNWKWCELEDAIKIADYA---EMGSLLRKFSAFLA  135 (137)
T ss_dssp             EEEEEEEEEEEEC-SCCCCCC-CTTEEEEEEECHHHHHHHHCCH---HHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEEec-CCCCcCC-CcceEEEEEEEHHHHHHhcCCH---HHHHHHHHHHHHhc
Confidence             122333443432 2233333 4789999999999998764322   24678887777664

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.78  E-value=2e-19  Score=149.71  Aligned_cols=125  Identities=22%  Similarity=0.334  Sum_probs=82.2

Q ss_pred             EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---CCCceE
Q 019517          170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN---VAFQKS  246 (340)
Q Consensus       170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~---~~~~~~  246 (340)
                      .++++|+. +|+|||++|+     ..|.|.+|||++|+||++.+||+||++||||+++.....+.......   ......
T Consensus         3 ~a~~vi~~-d~kvLl~~r~-----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   76 (152)
T d1k2ea_           3 VTSGVLVE-NGKVLLVKHK-----RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLV   76 (152)
T ss_dssp             EEEEECEE-TTEEEEEECT-----TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSE
T ss_pred             EEEEEEEE-CCEEEEEEEc-----CCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEE
Confidence            35556664 5899999986     46789999999999999999999999999999987655433211111   111111


Q ss_pred             EEEEEEEEecCCC--------cccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517          247 DLFFICMLKPLST--------EIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  304 (340)
Q Consensus       247 ~~~f~~~~~~~~~--------~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~  304 (340)
                      ...+.... ....        ...++.+|+.+++|++++++.++...+.   .+.++..+++.+.+
T Consensus        77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~  138 (152)
T d1k2ea_          77 ILEEVVKY-PEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPN---VRKVVSLALSTLYR  138 (152)
T ss_dssp             EEEEEEEC-SSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTT---HHHHHHHHHHHHHH
T ss_pred             EEEEEEec-CCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHH---HHHHHHHHHHHHhh
Confidence            11111111 0000        1123457888999999999999877553   46777777766543

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1.1e-18  Score=144.94  Aligned_cols=123  Identities=17%  Similarity=0.166  Sum_probs=82.6

Q ss_pred             ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC---C
Q 019517          167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA---F  243 (340)
Q Consensus       167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~---~  243 (340)
                      .+++++++|+++++++||+.++     ..|.|.+|||++|+||++.+||+||++||||+++.....++........   .
T Consensus        16 ~r~~~~~vi~~~~~~~lll~~~-----~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   90 (147)
T d2azwa1          16 TRYAAYIIVSKPENNTMVLVQA-----PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQ   90 (147)
T ss_dssp             ECCEEEEECEEGGGTEEEEEEC-----TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTT
T ss_pred             CCCeEEEEEEECCCCEEEEEEc-----CCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeeccCC
Confidence            3477888899877665555554     2468999999999999999999999999999998877776544332211   1


Q ss_pred             c---eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517          244 Q---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  300 (340)
Q Consensus       244 ~---~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~  300 (340)
                      .   ....+|.+..  ... .....+|+.+++|++++++.++....   -.+.+++.+++
T Consensus        91 ~~~~~~~~~~~~~~--~~~-~~~~~~e~~~~~W~~~~e~~~~l~~~---~~r~~l~~~la  144 (147)
T d2azwa1          91 TAYYNPGYFYVANT--WRQ-LSEPLERTNTLHWVAPEEAVRLLKRG---SHRWAVEKWLA  144 (147)
T ss_dssp             EEEEEEEEEEEEEE--EEE-CSSCC-CCSEEEEECHHHHHHHBSCH---HHHHHHHHHHH
T ss_pred             ceEEEEEEEEEEEe--ccc-cCCCCccceEEEEEEHHHHHHHcCCh---hHHHHHHHHHh
Confidence            1   1122333332  222 22344678899999999998764332   23667776664

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.75  E-value=1.6e-18  Score=150.94  Aligned_cols=117  Identities=18%  Similarity=0.149  Sum_probs=86.5

Q ss_pred             eeEEEEEEEe-CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          168 QVGVGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       168 ~v~V~~lv~~-~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      ..+|.+++++ ++.+|||++|.......+|.|.||||++|+||++.+||+||++||||+....+++++.........+..
T Consensus        32 ~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~  111 (187)
T d1nqza_          32 RAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFH  111 (187)
T ss_dssp             EEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEE
T ss_pred             ccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccccE
Confidence            3444445553 345799999986655679999999999999999999999999999999999999988766555555555


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      ...|++.+.........+++|+.++.|+|++++.+.+.
T Consensus       112 V~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~~~~  149 (187)
T d1nqza_         112 VTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPL  149 (187)
T ss_dssp             EEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             EEEEEEEECCccccccccCCcceEEEeccHHHHhcCcc
Confidence            55577766544333445668999999999999987654

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=142.48  Aligned_cols=110  Identities=18%  Similarity=0.279  Sum_probs=77.8

Q ss_pred             eEEEEEEEe--CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517          169 VGVGGFVIN--DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  246 (340)
Q Consensus       169 v~V~~lv~~--~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~  246 (340)
                      ..+++++++  +++.+||++++.    .+|.|.+|||++++||++.+||+||++||||+.+....+++..........  
T Consensus        12 ~~a~~vv~~~~~~~~~lL~~~~~----~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~--   85 (135)
T d2fvva1          12 KRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHR--   85 (135)
T ss_dssp             EEEEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEE--
T ss_pred             eEEEEEEEEecCCCEEEEEEEeC----CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCcc--
Confidence            346667775  445677777652    468899999999999999999999999999999988887776554433322  


Q ss_pred             EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517          247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      ..++.+.............+|+.+++|++++|+.++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~  123 (135)
T d2fvva1          86 TYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQ  123 (135)
T ss_dssp             EEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHT
T ss_pred             EEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHh
Confidence            22222222222233333457888999999999988743

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.7e-18  Score=140.94  Aligned_cols=128  Identities=19%  Similarity=0.306  Sum_probs=92.6

Q ss_pred             eEEEEEEE---------eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE----
Q 019517          169 VGVGGFVI---------NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF----  235 (340)
Q Consensus       169 v~V~~lv~---------~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~----  235 (340)
                      .++|++++         +++.++||+|+.+    +.+.|.+|||++++||++.+||+||++||||+.+.....+..    
T Consensus         9 ~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~----~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~   84 (153)
T d1xsba_           9 RACGLIIFRRCLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRE   84 (153)
T ss_dssp             EEEEEEEEEECSSCSSSSTTEEEEEEEESS----TTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEE
T ss_pred             heeEEEEEeccccccccCCCCEEEEEEecC----CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceee
Confidence            55788887         4678999999874    356799999999999999999999999999999876665532    


Q ss_pred             EeeccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517          236 RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  304 (340)
Q Consensus       236 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~  304 (340)
                      .............+|++........+.+ .+|+.+++|++++|+.++....   -.+.++..+.+.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~e~~~~~~~~---~~~~iL~~~~~~L~~  149 (153)
T d1xsba_          85 LNYVARNKPKTVIYWLAEVKDYDVEIRL-SHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLCS  149 (153)
T ss_dssp             EEEESSSCEEEEEEEEEEESCTTCCCCC-CTTEEEEEEECHHHHHHHTCSH---HHHHHHHHHHHHHTT
T ss_pred             ecccccCceeEEEEEEEEEeecccccCC-CcceeEEEEEEHHHHHHhcCCH---HHHHHHHHHHHHHhc
Confidence            1111222223445565655544444443 4789999999999999876432   347788888777654

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=8.4e-17  Score=142.20  Aligned_cols=116  Identities=15%  Similarity=0.058  Sum_probs=88.1

Q ss_pred             eEEEEEEEeC-CceEEEEEeccCCCC-----CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517          169 VGVGGFVIND-NNEVLVVQEKYCNPA-----FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA  242 (340)
Q Consensus       169 v~V~~lv~~~-~~~VLLvqr~~~~~~-----~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~  242 (340)
                      -+|+++++++ +++++|+++. +++.     ....|++|+|.+|+||++++||+||+.||||+.+..+..++.+.+.++.
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~-R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~spg~  136 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQI-RIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG  136 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEE-CGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT
T ss_pred             CEEEEEEEEecCCeEEEEEEE-eccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccCCcc
Confidence            5677888875 4789999885 5443     3457999999999999999999999999999999999999888887777


Q ss_pred             CceEEEEEEEEEecCCC---cccCCcCceeeEEEEeccccccCCCC
Q 019517          243 FQKSDLFFICMLKPLST---EIKVDDLEIKGAKWMPFMEFVKQPLI  285 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~~---~~~~~~~E~~~~~Wv~leel~~~~~~  285 (340)
                      .....++|++.......   ....+++|..++.|+|++|+.++...
T Consensus       137 ~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~  182 (209)
T d1g0sa_         137 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE  182 (209)
T ss_dssp             BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHT
T ss_pred             cCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHc
Confidence            77777778776432211   11235567779999999999876543

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.65  E-value=3.8e-16  Score=127.06  Aligned_cols=117  Identities=16%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517          171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  250 (340)
Q Consensus       171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f  250 (340)
                      ++++++|++|++|+.||. ..+..+|+|+||||.++++|+ .++++||++||+|+++.....++...+..+.+.....+|
T Consensus         7 ~~~vi~~~~g~iLl~kR~-~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~~~~~~   84 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRD-STGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVF   84 (127)
T ss_dssp             EEEEEEESSSEEEEEECC-SSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSSEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEECC-CCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCCeEEEEEEE
Confidence            345567889999999986 556788999999999997776 789999999999999887766666655555555444556


Q ss_pred             EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                      .|....  +.     .+..+++|++++++.+++++..   .+++++.+.
T Consensus        85 ~~~~~~--~~-----~~~~~~~Wv~~~el~~~~~p~~---~~Ki~~~~~  123 (127)
T d1rrqa2          85 PGRLVH--GG-----PVEEPYRLAPEDELKAYAFPVS---HQRVWREYK  123 (127)
T ss_dssp             EEEEEC--CS-----CCCTTEEEEEGGGGGGSCCCHH---HHHHHHHHH
T ss_pred             EEEECC--CC-----ccccceEEeeHHHHhHCCCChH---HHHHHHHHH
Confidence            665432  21     2345789999999999988653   466666554

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.7e-15  Score=131.69  Aligned_cols=114  Identities=17%  Similarity=0.074  Sum_probs=83.9

Q ss_pred             eEEEEEEEe-CCceEEEEEeccCCCC------CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517          169 VGVGGFVIN-DNNEVLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV  241 (340)
Q Consensus       169 v~V~~lv~~-~~~~VLLvqr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~  241 (340)
                      -+|++++++ .+++|+|+++. |++.      ....|++|||.+| ||++++||+||+.||||+.+..+..++.+.+.++
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~-R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG  121 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQF-RVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG  121 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEE-CHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTT
T ss_pred             CEEEEEEEEcCCCEEEEEEee-ccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCcc
Confidence            468888887 46799999884 4432      4456889999988 6778999999999999999999999988777777


Q ss_pred             CCceEEEEEEEEEecCC--CcccCCcCceeeEEEEeccccccCCC
Q 019517          242 AFQKSDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVKQPL  284 (340)
Q Consensus       242 ~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~leel~~~~~  284 (340)
                      ......++|++......  .....+++|..++.|+|++|+.++..
T Consensus       122 ~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~  166 (189)
T d1viua_         122 GVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIK  166 (189)
T ss_dssp             TBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHH
T ss_pred             ccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHH
Confidence            76666777777653221  11223567888999999999987654

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.2e-13  Score=123.14  Aligned_cols=116  Identities=14%  Similarity=0.160  Sum_probs=77.7

Q ss_pred             eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee---------------------EEEEEEeec
Q 019517          181 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV---------------------EVIAFRHAH  239 (340)
Q Consensus       181 ~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~---------------------~~l~~~~~~  239 (340)
                      +|||++|+     ..|.|.||||+||+||++.+||+||+.||||+.+...                     .+.+.....
T Consensus       140 qvLlIkR~-----d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddp  214 (292)
T d1q33a_         140 QFVAIKRK-----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP  214 (292)
T ss_dssp             EEEEEECT-----TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT
T ss_pred             EEEEEEec-----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeecccccccccccccccc
Confidence            59999986     5689999999999999999999999999999976432                     111222111


Q ss_pred             cCCCc--eEEEEEEEEEecCC--Ccc-cCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhccc
Q 019517          240 NVAFQ--KSDLFFICMLKPLS--TEI-KVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY  306 (340)
Q Consensus       240 ~~~~~--~~~~~f~~~~~~~~--~~~-~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y  306 (340)
                      .....  ...++|.+......  ... ....+|+.+++|++++++..+..   +|  ..+|+.+.+++...|
T Consensus       215 rntd~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~~---~H--~~il~~aa~~~~Ah~  281 (292)
T d1q33a_         215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYA---SH--SQFIKLVAEKRDAHW  281 (292)
T ss_dssp             TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCST---TH--HHHHHHHHHHHTCCC
T ss_pred             CCCCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccchh---hH--HHHHHHHHHHHhccc
Confidence            11111  23344555443211  111 12357899999999999987643   33  678888877776554

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.31  E-value=3.7e-12  Score=110.70  Aligned_cols=96  Identities=27%  Similarity=0.413  Sum_probs=63.1

Q ss_pred             ceEEEEEeccCCCCCCCceEcceeeecCCCC-HHHHHHHHHHHHhCCcceeeEEEE--EEeec--cCCCceEEEEEEEEE
Q 019517          180 NEVLVVQEKYCNPAFAGLWKLPTGFIDESEE-IFKGAVREVKEETGVDTEFVEVIA--FRHAH--NVAFQKSDLFFICML  254 (340)
Q Consensus       180 ~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs-~~eAAiREv~EETGi~~~~~~~l~--~~~~~--~~~~~~~~~~f~~~~  254 (340)
                      ..||+++|      ..|.|.||||++|+||+ +++||+||+.||||+.+....++.  ....+  ........++|++..
T Consensus        43 ~~vl~~~r------~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~~~~~~~~~~~~~~~v~~fy~~~~  116 (196)
T d1u20a1          43 RVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKEL  116 (196)
T ss_dssp             EEEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTTSCEEEEEEEEEC
T ss_pred             cEEEEEEe------cCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEeeEEEEeccCCCCCEEEEEEEEEEc
Confidence            45666655      35899999999999996 678999999999999987655431  11111  122233445565554


Q ss_pred             ecCC--------CcccCCcCceeeEEEEecccccc
Q 019517          255 KPLS--------TEIKVDDLEIKGAKWMPFMEFVK  281 (340)
Q Consensus       255 ~~~~--------~~~~~~~~E~~~~~Wv~leel~~  281 (340)
                      ....        ......+.|+.++.|+|+.++.+
T Consensus       117 ~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1         117 KLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             CHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             chHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            2110        11122346889999999999865

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.8e-12  Score=103.30  Aligned_cols=124  Identities=16%  Similarity=0.196  Sum_probs=84.6

Q ss_pred             eeEEEEEEEe---CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCc--ceeeEEEEEEeeccCC
Q 019517          168 QVGVGGFVIN---DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD--TEFVEVIAFRHAHNVA  242 (340)
Q Consensus       168 ~v~V~~lv~~---~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~--~~~~~~l~~~~~~~~~  242 (340)
                      ...+.+++.+   .+++|||.||. ..+...|+|+||+|.++.||+..++|.||..+|.+..  +.....++.+.+..+.
T Consensus        12 ~~~~~~vv~~~~~~~~~iLl~kR~-~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH   90 (142)
T d1x51a1          12 ESSATCVLEQPGALGAQILLVQRP-NSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH   90 (142)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEECC-CCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS
T ss_pred             EEEEEEEEEecCCCCCEEEEEECC-CCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCC
Confidence            3444555555   36899999996 4578899999999999999999988887776666543  3444555544444455


Q ss_pred             CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517          243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  299 (340)
Q Consensus       243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l  299 (340)
                      +.....+|.|...  ++..  ...|..+.+|++++++.+++++.   .++++++.+.
T Consensus        91 ~~~~~~v~~~~~~--~~~~--~~~~~~~~~W~~~~el~~~~lp~---~~~Kil~~~~  140 (142)
T d1x51a1          91 IKLTYQVYGLALE--GQTP--VTTVPPGARWLTQEEFHTAAVST---AMKKVFRVYQ  140 (142)
T ss_dssp             CEEEEEEEEEECS--SCCC--CCCCCTTEEEEEHHHHHHSCCCH---HHHHHHHHHH
T ss_pred             cceEEEEEEEEEe--CCCc--ccccCccCEEeeHHHccccCCCH---HHHHHHHHHh
Confidence            4444455555542  2222  23567789999999999988755   3566665543