Citrus Sinensis ID: 019518

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MADHTLKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE
cccccccEEEEEEEcccEEEEEEccccEEEEEEEEccccccccEEEcccccHHHHcccccccccccccccccccccEEEEccEEEEEcccccccccccccccccEEEEEEEEEEcccccEEEEEEEccccccccccEEEEEEEEEEccccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEccEEEEcccccccccccccccccccccccccHHHHHHccccccccEEEEEEcccccccccEEEEEEEccccccEEEEEEcccEEEEEccccccccccccccEEcccEEEEEcccccccccccccccccEEccccEEEEEEEEEEEEc
ccccccEEEEEEEEcccEEEEEEEccEEEEEEEEcccccccccEEEccccHHHHHccccccEEEEEEHHHHHccccEEEEccEEEEEEccccccccccccccccEEEEEEEEcccccccEEEEEEEccccccccccEEEEEEEEEEccccEEEEEEEEEccccccEEEcccccEEEcccccccccccEEEEEEccccccccccccccccEccccccccccccccccHHHHHccccccccccEEEcccccccccEEEEEEEccccccEEEEEEccccEEEEEccccccccccccEEEccccEEEEEcccccccccccccccEEEccccEEEEEEEEEEEcc
madhtlkpevfelnngsmqvKITNYGAIItslsvpdkhgnwadvvlgfdsvepyvkgaapffGCIVGRVanrikdgkfsldgveytlpinkppnslhggfkgFDKVVWEVAEykkgenpsitfkyrsrdgeegypgdvSVMATYTLTSsttmrldmeavpenkptpislaQHTYwnlaghhsgnildhsiqiwgshitpvdqntvptgeimpvkgtpfdfttekkigasinevpglgydhnyvldcgeeksglkhaaklkepstsrvlnlwtnapgmqfytgnyvngvvgkggavygkhsgvcletqgfpnainqpnfpsvvvrpgesyqhtMLFEFSVE
madhtlkpEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPinkppnslhggFKGFDKVVWEVAeykkgenpsitfkyrsrdgeegypgdVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAaklkepstsrvLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE
MADHTLKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTgnyvngvvgkggavygkHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE
**********FELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKY**********GDVSVMATYTLT*******************ISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEE***************SRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLF*****
***HTLKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE
MADHTLKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE
****TLKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE
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MADHTLKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
Q66HG4342 Aldose 1-epimerase OS=Rat yes no 0.944 0.938 0.460 6e-81
Q9GKX6342 Aldose 1-epimerase OS=Sus yes no 0.944 0.938 0.472 8e-81
Q8K157342 Aldose 1-epimerase OS=Mus yes no 0.944 0.938 0.457 1e-80
Q96C23342 Aldose 1-epimerase OS=Hom yes no 0.944 0.938 0.463 2e-80
Q5R8U1342 Aldose 1-epimerase OS=Pon yes no 0.944 0.938 0.463 6e-80
Q5EA79342 Aldose 1-epimerase OS=Bos yes no 0.944 0.938 0.466 8e-80
P05149381 Aldose 1-epimerase OS=Aci yes no 0.955 0.853 0.374 1e-59
P0A9C4346 Aldose 1-epimerase OS=Shi yes no 0.938 0.921 0.327 2e-47
P0A9C3346 Aldose 1-epimerase OS=Esc N/A no 0.938 0.921 0.327 2e-47
P31765340 Aldose 1-epimerase OS=Hae yes no 0.917 0.917 0.321 4e-38
>sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 Back     alignment and function desciption
 Score =  301 bits (770), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 153/332 (46%), Positives = 214/332 (64%), Gaps = 11/332 (3%)

Query: 9   EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGR 68
           E F+L +  + V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG +VGR
Sbjct: 20  EKFQLRSDQLNVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQ-KQPYFGAVVGR 78

Query: 69  VANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSR 128
           VANRI  G+F++DG EY LPIN+ PNSLHGGF+GFDKV+W       G    + F   S 
Sbjct: 79  VANRIAKGRFTVDGKEYHLPINREPNSLHGGFRGFDKVLWTPQVLSNG----VQFSRVSP 134

Query: 129 DGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDH 188
           DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S +I DH
Sbjct: 135 DGEEGYPGELKVWVTYTLDGG-ELVVNYRA-QASQTTPVNLTNHSYFNLAGQGSPDIYDH 192

Query: 189 SIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGE 248
            + I      PVD+  +PTG I PV+GT FD     ++G  +      G+DHN+ L   +
Sbjct: 193 EVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGKHLQSYHIHGFDHNFCLKESK 252

Query: 249 EKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVV-GKGGAVYGKHSGVCLETQ 307
           EK   K  A++   ++ R+L ++T  PG+QFYTGN+++G + GK G VY KHSG CLETQ
Sbjct: 253 EK---KFCARVHHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLETQ 309

Query: 308 GFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 339
            +P+A+NQP FP +++RPGE Y HT  F+FSV
Sbjct: 310 NWPDAVNQPQFPPILLRPGEEYNHTTWFKFSV 341
Mutarotase converts alpha-aldose to the beta-anomer. It is active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose.
Rattus norvegicus (taxid: 10116)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 3
>sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1 Back     alignment and function description
>sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 Back     alignment and function description
>sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1 Back     alignment and function description
>sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 Back     alignment and function description
>sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1 Back     alignment and function description
>sp|P31765|GALM_HAEIN Aldose 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=galM PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
255579259340 aldose-1-epimerase, putative [Ricinus co 0.997 0.997 0.841 1e-172
225456177338 PREDICTED: aldose 1-epimerase [Vitis vin 0.979 0.985 0.862 1e-170
224118626337 predicted protein [Populus trichocarpa] 0.991 1.0 0.832 1e-168
449439151339 PREDICTED: aldose 1-epimerase-like [Cucu 0.997 1.0 0.805 1e-165
297734338322 unnamed protein product [Vitis vinifera] 0.947 1.0 0.863 1e-163
297834706341 aldose 1-epimerase family protein [Arabi 0.994 0.991 0.818 1e-159
357499099339 Aldose 1-epimerase family protein expres 0.997 1.0 0.776 1e-158
30684727341 aldose 1-epimerase [Arabidopsis thaliana 0.994 0.991 0.809 1e-158
388505008339 unknown [Lotus japonicus] 0.997 1.0 0.776 1e-157
115481198362 Os10g0155500 [Oryza sativa Japonica Grou 0.967 0.908 0.785 1e-154
>gi|255579259|ref|XP_002530475.1| aldose-1-epimerase, putative [Ricinus communis] gi|223529972|gb|EEF31898.1| aldose-1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 287/341 (84%), Positives = 321/341 (94%), Gaps = 2/341 (0%)

Query: 1   MADHT-LKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAA 59
           MADHT + P++FELNNG+M VKITN G  ITSL++PDK+GN ADVVLGFDS+EPY+KG A
Sbjct: 1   MADHTQMTPQLFELNNGTMLVKITNLGCTITSLTLPDKNGNLADVVLGFDSLEPYLKGVA 60

Query: 60  PFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENP 119
           P+FG IVGRVANRIKDGKF+LDGV+YTLP+N+PPNSLHGG KGFDK++WEVA+YKKGENP
Sbjct: 61  PYFGSIVGRVANRIKDGKFTLDGVDYTLPLNRPPNSLHGGLKGFDKMIWEVADYKKGENP 120

Query: 120 SITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAG 179
           SITFKY S DGEEGYPGD+SV ATY+L SSTTMRLDMEAVP++K TP++LAQHTYWNLAG
Sbjct: 121 SITFKYHSHDGEEGYPGDLSVTATYSLASSTTMRLDMEAVPKDKATPVNLAQHTYWNLAG 180

Query: 180 HHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYD 239
           H+SG+ILDH+IQIWGS +TPVDQNTVPTG+IMPVKGTPFDFTTEKK+GASI EV GLGYD
Sbjct: 181 HNSGSILDHAIQIWGSQVTPVDQNTVPTGDIMPVKGTPFDFTTEKKVGASIREV-GLGYD 239

Query: 240 HNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKH 299
           HNYVLDCGEEKSGLK AAKLK+PS+SRVLNLWTNAPGMQFYT NYVNGVVGKGGAVYGKH
Sbjct: 240 HNYVLDCGEEKSGLKRAAKLKDPSSSRVLNLWTNAPGMQFYTANYVNGVVGKGGAVYGKH 299

Query: 300 SGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE 340
           SG+CLETQGFPNAINQPNFPSVVVRPGE+Y+HTMLFEFSVE
Sbjct: 300 SGLCLETQGFPNAINQPNFPSVVVRPGETYKHTMLFEFSVE 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456177|ref|XP_002282634.1| PREDICTED: aldose 1-epimerase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224118626|ref|XP_002317867.1| predicted protein [Populus trichocarpa] gi|222858540|gb|EEE96087.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449439151|ref|XP_004137351.1| PREDICTED: aldose 1-epimerase-like [Cucumis sativus] gi|449497476|ref|XP_004160412.1| PREDICTED: aldose 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297734338|emb|CBI15585.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297834706|ref|XP_002885235.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297331075|gb|EFH61494.1| aldose 1-epimerase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357499099|ref|XP_003619838.1| Aldose 1-epimerase family protein expressed [Medicago truncatula] gi|355494853|gb|AES76056.1| Aldose 1-epimerase family protein expressed [Medicago truncatula] Back     alignment and taxonomy information
>gi|30684727|ref|NP_566594.2| aldose 1-epimerase [Arabidopsis thaliana] gi|9294498|dbj|BAB02717.1| aldose 1-epimerase-like protein [Arabidopsis thaliana] gi|332642506|gb|AEE76027.1| aldose 1-epimerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388505008|gb|AFK40570.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|115481198|ref|NP_001064192.1| Os10g0155500 [Oryza sativa Japonica Group] gi|78707805|gb|ABB46780.1| Aldose 1-epimerase family protein, expressed [Oryza sativa Japonica Group] gi|113638801|dbj|BAF26106.1| Os10g0155500 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
TAIR|locus:2088555341 AT3G17940 [Arabidopsis thalian 0.991 0.988 0.765 1.9e-140
TAIR|locus:2100352358 AT3G47800 [Arabidopsis thalian 0.961 0.913 0.509 5.4e-86
TAIR|locus:2150886490 AT5G15140 [Arabidopsis thalian 0.958 0.665 0.465 1.6e-77
RGD|1359459342 Galm "galactose mutarotase (al 0.944 0.938 0.433 1.3e-70
UNIPROTKB|Q9GKX6342 GALM "Aldose 1-epimerase" [Sus 0.944 0.938 0.442 2.1e-70
UNIPROTKB|Q5EA79342 GALM "Aldose 1-epimerase" [Bos 0.944 0.938 0.439 4.3e-70
MGI|MGI:2442420342 Galm "galactose mutarotase" [M 0.944 0.938 0.427 5.5e-70
UNIPROTKB|E2QWA2342 GALM "Uncharacterized protein" 0.944 0.938 0.433 8.9e-70
UNIPROTKB|Q96C23342 GALM "Aldose 1-epimerase" [Hom 0.944 0.938 0.433 1.4e-69
ZFIN|ZDB-GENE-040718-66342 galm "galactose mutarotase" [D 0.941 0.935 0.429 2.7e-68
TAIR|locus:2088555 AT3G17940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 261/341 (76%), Positives = 285/341 (83%)

Query:     1 MADHTLK-PEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAA 59
             MAD +   PE+FELNNG+MQVKI+NYG  ITSLSVPDK+G   DVVLGFDSV+PYVKG A
Sbjct:     1 MADQSKNTPEIFELNNGTMQVKISNYGTTITSLSVPDKNGKLGDVVLGFDSVDPYVKGLA 60

Query:    60 PFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKK-GEN 118
             P+FGCIVGRVANRIK+GKFSL+GV YTLPINKPPNSLHGG KGFDK +WEVA +K+ GE 
Sbjct:    61 PYFGCIVGRVANRIKEGKFSLNGVNYTLPINKPPNSLHGGNKGFDKKIWEVAGHKRDGEK 120

Query:   119 PSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLA 178
             P ITFKY S DGEEGYPG VSV ATYTLTS+TTMRLDMEAVPENK TPI+LAQHTYWNLA
Sbjct:   121 PFITFKYHSADGEEGYPGAVSVTATYTLTSATTMRLDMEAVPENKDTPINLAQHTYWNLA 180

Query:   179 GHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGY 238
             GH SGNILDH IQIWGSHITPVD+ TVPTGEI+PVKGTPFDFT EK+IG SI EV G+GY
Sbjct:   181 GHDSGNILDHKIQIWGSHITPVDEYTVPTGEILPVKGTPFDFTEEKRIGESIGEV-GIGY 239

Query:   239 DHNYVLDC-GEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXX 297
             DHNYVLDC  +EK GLKHAAKL + ++SRVLNLWTN PGMQFYT                
Sbjct:   240 DHNYVLDCPDQEKEGLKHAAKLSDAASSRVLNLWTNVPGMQFYTGNYVNGVVGKGNAVYG 299

Query:   298 XHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFS 338
              H+GVCLETQGFPNAINQ NFPSVVV+ GE Y HTMLFEFS
Sbjct:   300 KHAGVCLETQGFPNAINQSNFPSVVVKAGEKYNHTMLFEFS 340
GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0016853 "isomerase activity" evidence=IEA
GO:0019318 "hexose metabolic process" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0042732 "D-xylose metabolic process" evidence=RCA
TAIR|locus:2100352 AT3G47800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150886 AT5G15140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1359459 Galm "galactose mutarotase (aldose 1-epimerase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKX6 GALM "Aldose 1-epimerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EA79 GALM "Aldose 1-epimerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2442420 Galm "galactose mutarotase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWA2 GALM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96C23 GALM "Aldose 1-epimerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-66 galm "galactose mutarotase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R8U1GALM_PONAB5, ., 1, ., 3, ., 30.46380.94410.9385yesno
P05149GALM_ACICA5, ., 1, ., 3, ., 30.37460.95580.8530yesno
P31765GALM_HAEIN5, ., 1, ., 3, ., 30.32120.91760.9176yesno
Q5EA79GALM_BOVIN5, ., 1, ., 3, ., 30.46680.94410.9385yesno
Q9GKX6GALM_PIG5, ., 1, ., 3, ., 30.47280.94410.9385yesno
P0A9C4GALM_SHIFL5, ., 1, ., 3, ., 30.32730.93820.9219yesno
Q66HG4GALM_RAT5, ., 1, ., 3, ., 30.46080.94410.9385yesno
Q8K157GALM_MOUSE5, ., 1, ., 3, ., 30.45780.94410.9385yesno
Q96C23GALM_HUMAN5, ., 1, ., 3, ., 30.46380.94410.9385yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.30.914
3rd Layer5.1.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017847001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (338 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034293001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (498 aa)
     •  0.899
GSVIVG00022229001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (523 aa)
     •  0.899
GSVIVG00016656001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (470 aa)
     •  0.899
GSVIVG00014427001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (485 aa)
     •  0.899
GSVIVG00010644001
SubName- Full=Chromosome chr7 scaffold_275, whole genome shotgun sequence; (479 aa)
     •  0.899
GSVIVG00030923001
SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (1008 aa)
•     • 0.434

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
PLN00194337 PLN00194, PLN00194, aldose 1-epimerase; Provisiona 0.0
cd09019326 cd09019, galactose_mutarotase_like, galactose muta 1e-169
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 1e-101
TIGR02636336 TIGR02636, galM_Leloir, galactose mutarotase 3e-91
PRK11055342 PRK11055, galM, galactose-1-epimerase; Provisional 6e-89
COG2017308 COG2017, GalM, Galactose mutarotase and related en 3e-70
PTZ00485376 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisio 3e-47
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 1e-35
cd09022284 cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, 3e-17
PRK15172300 PRK15172, PRK15172, putative aldose-1-epimerase; P 1e-07
cd09021273 cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, 2e-07
>gnl|CDD|215098 PLN00194, PLN00194, aldose 1-epimerase; Provisional Back     alignment and domain information 
 Score =  647 bits (1670), Expect = 0.0
 Identities = 251/333 (75%), Positives = 284/333 (85%), Gaps = 3/333 (0%)

Query: 7   KPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIV 66
           KP ++EL NG++ VK+TNYGA ITSL +PDK+G  ADVVLGFDSVEPY   + P+FG IV
Sbjct: 8   KPGIYELKNGNISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDS-PYFGAIV 66

Query: 67  GRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYR 126
           GRVANRIK  KF+L+GV Y LP N  PNSLHGG KGF KVVWEVA+YKKGE PSITFKY 
Sbjct: 67  GRVANRIKGAKFTLNGVTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYKKGEKPSITFKYH 126

Query: 127 SRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNIL 186
           S DGEEG+PGD+SV  TYTL SS T+RLDMEA P NK TP++LAQHTYWNLAGH+SG+IL
Sbjct: 127 SFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPLNKATPVNLAQHTYWNLAGHNSGDIL 186

Query: 187 DHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDC 246
            H IQI+GSHITPVD+N +PTGEI+PVKGTPFDFTT KKIG+ INE+P  GYDHNYVLD 
Sbjct: 187 SHKIQIFGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINELPK-GYDHNYVLD- 244

Query: 247 GEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLET 306
           GEEK GLK AAK+K+P + RVL LWTNAPGMQFYT NYVNGV GKGGAVYGKH+G+CLET
Sbjct: 245 GEEKEGLKKAAKVKDPKSGRVLELWTNAPGMQFYTSNYVNGVKGKGGAVYGKHAGLCLET 304

Query: 307 QGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 339
           QGFP+A+NQPNFPSVVV PGE Y+HTMLFEFS 
Sbjct: 305 QGFPDAVNQPNFPSVVVNPGEKYKHTMLFEFSA 337

Length = 337
>gnl|CDD|185696 cd09019, galactose_mutarotase_like, galactose mutarotase_like Back     alignment and domain information
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|233958 TIGR02636, galM_Leloir, galactose mutarotase Back     alignment and domain information
>gnl|CDD|182931 PRK11055, galM, galactose-1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|240435 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information
>gnl|CDD|185699 cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>gnl|CDD|237918 PRK15172, PRK15172, putative aldose-1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|185698 cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
PRK11055342 galM galactose-1-epimerase; Provisional 100.0
PLN00194337 aldose 1-epimerase; Provisional 100.0
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 100.0
PTZ00485376 aldolase 1-epimerase; Provisional 100.0
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 100.0
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 100.0
PRK15172300 putative aldose-1-epimerase; Provisional 100.0
COG2017308 GalM Galactose mutarotase and related enzymes [Car 100.0
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 100.0
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 100.0
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
KOG1594305 consensus Uncharacterized enzymes related to aldos 99.92
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 99.86
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.84
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 99.2
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 99.13
PF14315274 DUF4380: Domain of unknown function (DUF4380) 98.06
TIGR03593366 yidC_nterm membrane protein insertase, YidC/Oxa1 f 94.41
PF14849270 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ 93.98
PRK01318 521 membrane protein insertase; Provisional 87.02
PF02929276 Bgal_small_N: Beta galactosidase small chain; Inte 84.17
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-73  Score=539.31  Aligned_cols=332  Identities=36%  Similarity=0.687  Sum_probs=300.4

Q ss_pred             CCCCCCccEEEEEEe-CCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEE
Q 019518            1 MADHTLKPEVFELNN-GSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFS   79 (340)
Q Consensus         1 ~~~~~~~~~~~~L~n-~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~   79 (340)
                      +|.+|..+..|+|+| ++++|+|+++||+|++|+++|++|+++|||+||+++++|..+ +.++|++|+||||||++|+|.
T Consensus         2 ~~~~g~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~-~~~~Ga~iGr~anRI~~g~f~   80 (342)
T PRK11055          2 LAPDGQPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQ-AAYLGASVGRYANRIANSRFT   80 (342)
T ss_pred             cCCCCCeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhC-CCccCceeCCcCCcccCCEEE
Confidence            467899999999998 579999999999999999999999889999999999999987 789999999999999999999


Q ss_pred             ECCEEEEccCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEe
Q 019518           80 LDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAV  159 (340)
Q Consensus        80 ~~G~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~  159 (340)
                      ++|++|+|+.|+++|+|||+..||+.+.|+++...   .++|+|++.++++.+||||++.++|+|+|+++++|+|+|+++
T Consensus        81 ~~G~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~---~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~  157 (342)
T PRK11055         81 LDGETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN---DRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRAT  157 (342)
T ss_pred             ECCEEEEcccCCCCcccCCCCcccCCcEEEEEEcc---CCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEE
Confidence            99999999999999999999999999999998776   679999999988889999999999999998667999999995


Q ss_pred             eCCCceeeeecccceeecCCC-CCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCC----
Q 019518          160 PENKPTPISLAQHTYWNLAGH-HSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVP----  234 (340)
Q Consensus       160 n~~~~~p~~~g~HpyF~l~~~-~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~----  234 (340)
                       ++++||+|+|+||||||++. ...++.+|.|+++|+.++++|+++||||++.++++++|||+.++.|++.+..+.    
T Consensus       158 -~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~~~~~~  236 (342)
T PRK11055        158 -VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQINADEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLADDDQQK  236 (342)
T ss_pred             -cCCCeEEeccccceEECCCCCCCCCccceEEEEecCCEEEECcccCccCcEeccCCCcccccCCcCcCcccccchhccc
Confidence             69999999999999999874 235799999999999999999999999999999999999999999988653211    


Q ss_pred             -CCcceeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCC
Q 019518          235 -GLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAI  313 (340)
Q Consensus       235 -~~~~D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~  313 (340)
                       . ++||+|+|+. .. +...++|+|.++.++++|+|++++|+|||||+++++...++.|++|.++.+||||||++|||+
T Consensus       237 ~~-g~D~~fvl~~-~~-~~~~~~a~l~~~~sg~~l~v~t~~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~Pda~  313 (342)
T PRK11055        237 VK-GYDHAFLLQA-KG-DGKKPAAHLWSPDEKLQMKVYTTAPALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLPDSP  313 (342)
T ss_pred             CC-CcceEEEECC-CC-cccceeEEEEcCCCCeEEEEEcCCCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCCCcc
Confidence             2 7999999863 11 112468999999999999999999999999999886544667888999999999999999999


Q ss_pred             CCCCCC--CeEECCCCEEEEEEEEEEEeC
Q 019518          314 NQPNFP--SVVVRPGESYQHTMLFEFSVE  340 (340)
Q Consensus       314 n~~~~~--~~~L~pge~~~~~~~y~f~~~  340 (340)
                      |+++|+  .++|+|||+|++++.|+|++|
T Consensus       314 n~~~f~~~~~~L~pg~~y~~~t~y~f~~~  342 (342)
T PRK11055        314 NHPEWPQPDCILKPGEEYRSLTEYQFIAE  342 (342)
T ss_pred             cccCCCCCCeEECCCCEEEEEEEEEEEeC
Confidence            999996  899999999999999999986

>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain Back     alignment and domain information
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
1snz_A344 Crystal Structure Of Apo Human Galactose Mutarotase 5e-73
1lur_A339 Crystal Structure Of The GalmALDOSE EPIMERASE HOMOL 7e-35
1l7j_A347 X-Ray Structure Of Galactose Mutarotase From Lactoc 3e-33
1ns0_A347 Crystal Structure Of Galactose Mutarotase From Lact 7e-33
1ns8_A347 Crystal Structure Of Galactose Mutarotase From Lact 1e-32
1ns2_A347 Crystal Structure Of Galactose Mutarotase From Lact 1e-32
1nsm_A347 Crystal Structure Of Galactose Mutarotase From Lact 2e-32
1nsu_A347 Crystal Structure Of Galactose Mutarotase From Lact 2e-32
1nsx_A347 Crystal Structure Of Galactose Mutarotase From Lact 2e-32
3imh_A338 Crystal Structure Of Galactose 1-Epimerase From Lac 7e-25
1z45_A699 Crystal Structure Of The Gal10 Fusion Protein Galac 4e-22
1yga_A342 Crystal Structure Of Saccharomyces Cerevisiae Yn9a 5e-13
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase Length = 344 Back     alignment and structure 
Iteration: 1

 Score =  271 bits (692), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 144/332 (43%), Positives = 199/332 (59%), Gaps = 11/332 (3%)
Query: 9   EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGR 68
           E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG ++GR
Sbjct: 22  EKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQ-KQPYFGAVIGR 80
Query: 69  VANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSR 128
           VANRI  G F +DG EY L INK PNSLHGG +GFDKV+W       G    + F   S 
Sbjct: 81  VANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNG----VQFSRISP 136
Query: 129 DGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDH 188
           DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH
Sbjct: 137 DGEEGYPGELKVWVTYTLDGGELI-VNYRA-QASQATPVNLTNHSYFNLAGQASPNINDH 194
Query: 189 SIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGE 248
            + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +
Sbjct: 195 EVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSK 254
Query: 249 EKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXX-XHSGVCLETQ 307
           EK      A++   ++ RVL ++T  PG+QFYT                  HSG CLETQ
Sbjct: 255 EK---HFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQ 311
Query: 308 GFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 339
            +P+A+NQP FP V++RPGE Y HT  F+FSV
Sbjct: 312 NWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 343
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE From C. Elegans, Northeast Structural Genomics Target Wr66 Length = 339 Back     alignment and structure
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus Lactis (Apo) Length = 347 Back     alignment and structure
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant E304q Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant D243n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant E304a Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant D243a Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant H96n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant H170n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From Lactobacillus Acidophilus Ncfm Length = 338 Back     alignment and structure
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 Back     alignment and structure
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a Protein, New York Structural Genomics Consortium Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 0.0
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 0.0
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 1e-173
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 1e-161
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 1e-161
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 3e-81
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 4e-59
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 6e-58
3os7_A341 Galactose mutarotase-like protein; structural geno 3e-47
3q1n_A294 Galactose mutarotase related enzyme; structural ge 2e-20
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 1e-19
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 1e-11
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 3e-04
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 5e-04
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Length = 344 Back     alignment and structure
 Score =  518 bits (1336), Expect = 0.0
 Identities = 152/340 (44%), Positives = 213/340 (62%), Gaps = 11/340 (3%)

Query: 1   MADHTLKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAP 60
           +       E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P
Sbjct: 14  LPSGGGTVEKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQ-P 72

Query: 61  FFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPS 120
           +FG ++GRVANRI  G F +DG EY L INK PNSLHGG +GFDKV+W         +  
Sbjct: 73  YFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVL----SNG 128

Query: 121 ITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGH 180
           + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG 
Sbjct: 129 VQFSRISPDGEEGYPGELKVWVTYTLDGGE-LIVNYRAQA-SQATPVNLTNHSYFNLAGQ 186

Query: 181 HSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDH 240
            S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DH
Sbjct: 187 ASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDH 246

Query: 241 NYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNG-VVGKGGAVYGKH 299
           N+ L   +E       A++   ++ RVL ++T  PG+QFYTGN+++G + GK GAVY KH
Sbjct: 247 NFCLKGSKE---KHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKH 303

Query: 300 SGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 339
           SG CLETQ +P+A+NQP FP V++RPGE Y HT  F+FSV
Sbjct: 304 SGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 343
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Length = 339 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Length = 347 Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Length = 342 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Length = 338 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 100.0
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 100.0
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 100.0
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 100.0
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 100.0
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 100.0
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 100.0
3os7_A341 Galactose mutarotase-like protein; structural geno 100.0
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
1jov_A270 HI1317; hypothetical protein, structure 2 function 99.97
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.87
3bs6_A280 Inner membrane protein OXAA; YIDC/OXA1/ALB3 family 91.41
3blc_A330 Inner membrane protein OXAA; YIDC, membrane assemb 89.49
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
Probab=100.00  E-value=1.3e-69  Score=509.46  Aligned_cols=311  Identities=30%  Similarity=0.519  Sum_probs=279.2

Q ss_pred             CCCccEEEEEEeC-CEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECC
Q 019518            4 HTLKPEVFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDG   82 (340)
Q Consensus         4 ~~~~~~~~~L~n~-~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G   82 (340)
                      +|+.+..|+|+|+ +++|+|+++||+|++|++++     +||||++++.+.|..+ +.++|++|+||||||++|+|.++|
T Consensus        14 ~g~~v~~~tL~n~~g~~v~i~~~GA~l~sl~~~~-----~dvvlg~~~~~~y~~~-~~~~G~~lgp~anRI~~g~f~~~G   87 (338)
T 3imh_A           14 DNKDLCEITLENDAGMAVKVLNYGATLEKVLLDG-----ENMILSLNSPEDYSKE-RNFLGGTVGRIAGRVRAGQWKHGN   87 (338)
T ss_dssp             TTEEEEEEEEECSSSEEEEEETBTTEEEEEEETT-----EECBCCCSSGGGGGTS-CCCTTCEECSBCSEEGGGEEEETT
T ss_pred             CCeEEEEEEEECCCcEEEEEecCCcEEEEEEECC-----EEEEecCCChHHhccC-CCeEeeEEEeeCCEecCCEEEECC
Confidence            5788999999997 69999999999999999953     5999999999999887 889999999999999999999999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCC
Q 019518           83 VEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPEN  162 (340)
Q Consensus        83 ~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~~  162 (340)
                      ++|+|+.|+++|+|||++ ||+++.|+++.....++++|+|++.++++.++|||+++++|+|+|+++++|+|+|+++ ++
T Consensus        88 ~~y~L~~N~g~n~LHGg~-g~~~~~W~v~~~~~~~~~~v~l~l~s~d~~~gyPg~~~~~vtY~L~~~~~L~i~~~a~-~d  165 (338)
T 3imh_A           88 EIHQLPLNDGDNHIHGGI-GTDMHVWDFRPSCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAV-SD  165 (338)
T ss_dssp             EEEECCCCBTTBEETTSS-CGGGSBCEEEEEECSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTSEEEEEEEEE-ES
T ss_pred             EEEECCCCCCCcCCCCCC-CcCCceEEEEeeeecCCCEEEEEEECCccccCCCeEEEEEEEEEEecCCeEEEEEEEe-cC
Confidence            999999999999999999 9999999996533223678999999988889999999999999998557899999996 79


Q ss_pred             CceeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCC------CC
Q 019518          163 KPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVP------GL  236 (340)
Q Consensus       163 ~~~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~------~~  236 (340)
                      ++|||++|+||||||++    ++++|.|+|+|+.++++|+++||||+++++++++|||+.+++|++.+....      + 
T Consensus       166 ~~tp~nlg~HpYFnL~g----~i~~~~L~i~a~~~~~~d~~~iPTG~~~~v~gt~~DFr~~~~ig~~~~~~~~q~~~~~-  240 (338)
T 3imh_A          166 KLTIFNPVNHTYFNLGE----RAEDLNLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRN-  240 (338)
T ss_dssp             SSEECBCEECCEECTTS----CGGGCEEEECEEEECCBCTTSSBSSCCEECTTSTTCCSSCEEHHHHHTSCCHHHHHHT-
T ss_pred             CCeEEEEeeCCEEeCCC----CcCCeEEEEEcCcEEEeCCccCCcCceecCCCCcccCCCCeEcchhhhccchhhcccC-
Confidence            99999999999999986    699999999999999999999999999999999999999999988765432      2 


Q ss_pred             cceeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCCCCC
Q 019518          237 GYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQP  316 (340)
Q Consensus       237 ~~D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~n~~  316 (340)
                      ++||+|+++. .     +++|+|.+  +|++|+|++++|++||||++.++.. + .|..|.++.+||||||++|  +|++
T Consensus       241 g~Dh~f~l~~-~-----~~~a~l~~--sg~~l~v~t~~p~~q~YTgn~l~~~-g-~g~~~~~~~g~clE~q~~P--~n~~  308 (338)
T 3imh_A          241 GLDHPFILNG-N-----NPAALLSS--NKHRLIVKTNAPALVLYAGNHFNHT-G-IVNNIGQYDGITFEAQCPP--AEGN  308 (338)
T ss_dssp             SCEEEEEECS-C-----SCSEEEEC--SSEEEEEEESSSEEEEECCTTCCSB-T-TBTTCCTTSCEECEEESCC--CSSS
T ss_pred             CCCCceeecC-C-----ceEEEEEC--CCeEEEEEeCCCEEEEeCCCCcCCC-C-CCcccCccCEEEEEccCCC--CCCC
Confidence            6999999852 1     35678864  8999999999999999999988654 4 5677888999999999988  8999


Q ss_pred             CCCCeEECCCCEEEEEEEEEEEe
Q 019518          317 NFPSVVVRPGESYQHTMLFEFSV  339 (340)
Q Consensus       317 ~~~~~~L~pge~~~~~~~y~f~~  339 (340)
                      +|+.++|+|||+|+.++.|+|+-
T Consensus       309 ~f~~~vL~pGe~y~~~t~y~f~~  331 (338)
T 3imh_A          309 DLGQITLLPFEKFKRTVDWKFEE  331 (338)
T ss_dssp             CCGGGEECTTCCEEEEEEEEEEE
T ss_pred             CCCCeEECCCCEEEEEEEEEECC
Confidence            99999999999999999999963
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Back     alignment and structure
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 340
d1nsza_340 b.30.5.4 (A:) Galactose mutarotase {Lactococcus la 1e-102
d1lura_329 b.30.5.4 (A:) Aldose 1-epimerase homologue {Nemato 3e-97
d1z45a1342 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's 1e-95
d1so0a_344 b.30.5.4 (A:) Galactose mutarotase {Human (Homo sa 1e-95
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Length = 340 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Aldose 1-epimerase (mutarotase)
domain: Galactose mutarotase
species: Lactococcus lactis [TaxId: 1358]

 Score =  302 bits (774), Expect = e-102
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 19/339 (5%)

Query: 9   EVFELNNGS-MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVG 67
           ++  L N + + +  TN GA I       K      ++LGFDS + Y++    + G  VG
Sbjct: 12  DLISLTNKAGVTISFTNLGARIVDWQKDGK-----HLILGFDSAKEYLEKD-AYPGATVG 65

Query: 68  RVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRS 127
             A RIKDG   + G +Y L  N+ P +LHGG +     +W       G    + F   S
Sbjct: 66  PTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVS 125

Query: 128 RDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILD 187
            DG  GYPG + +  T++       ++  EA+  +K T  +   + Y+NL G  S ++ +
Sbjct: 126 NDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGNVYFNLNGDASESVEN 184

Query: 188 HSIQIWGSHITPV-DQNTVPTGEIMPVKGTPFDFTTEKKIGASINE-----VPGLGYDHN 241
           H +++  S   P+ DQ  +  G+I+ +K T  DF  EK++  + N          G DH 
Sbjct: 185 HGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHP 244

Query: 242 YVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSG 301
           ++LD            + +       ++++T+ P +  +T N+ +            H G
Sbjct: 245 FLLDQLGLDK-----EQARLTLDDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHGG 299

Query: 302 VCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE 340
           +  E Q  P +   P    + ++ GE YQ T ++    +
Sbjct: 300 ITFECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHTK 338
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 329 Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Length = 344 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 100.0
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 100.0
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 100.0
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 99.96
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Aldose 1-epimerase (mutarotase)
domain: Aldose 1-epimerase homologue
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-70  Score=514.84  Aligned_cols=323  Identities=31%  Similarity=0.570  Sum_probs=290.0

Q ss_pred             EEEEEEe-CCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEc
Q 019518            9 EVFELNN-GSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTL   87 (340)
Q Consensus         9 ~~~~L~n-~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l   87 (340)
                      ..|+|+| .+++|+|+++||+|.+|+++|++|+.+|||+|+++.++|..+ +.++|++|+||||||++|+|.++|++|+|
T Consensus         3 ~~i~l~N~~g~~v~i~~~GA~i~~l~~pd~~g~~~~vvlg~d~~~~Y~~~-~~~~Ga~igr~aNRI~~g~f~~~G~~y~L   81 (329)
T d1lura_           3 GFIEIANKQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKD-AASIGKTVGRVANRIKNSTLHFDGKQYTM   81 (329)
T ss_dssp             CCEEEECSSSCEEEEETBTTEEEEEEEECTTSCEEECBCCCSSHHHHHHC-SSCTTCEECSBCSEEGGGEEEETTEEEEC
T ss_pred             cEEEEECCCCcEEEEECCCcEEEEEEEECCCCCEeeeEECCCCHHHHhhC-CCccCcEecCcCCeeeCCeEEECCEEEEe
Confidence            3689998 469999999999999999999999999999999999999988 88999999999999999999999999999


Q ss_pred             cCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCCCceee
Q 019518           88 PINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPI  167 (340)
Q Consensus        88 ~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~~p~  167 (340)
                      ++|+++|++||+..||+.+.|+++...   .++++|++.+.++..||||++.++|+|+|++++.|+|++++ ++++++|+
T Consensus        82 ~~N~~~n~lHGg~~g~~~~~w~v~~~~---~~~v~~~~~~~~~~~GyPg~l~~~vtY~L~~~~~l~i~~~a-~~d~~tp~  157 (329)
T d1lura_          82 TPNNGPHYLHGGPNGLGYRKWEVVRHA---PESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHA-TCDTPGLL  157 (329)
T ss_dssp             CCSBTTBEETTCTTSGGGSBCEEEEEE---TTEEEEEEEEEHHHHSSSSEEEEEEEEEECTTSEEEEEEEE-ECSSCEEC
T ss_pred             ccCCCCcccccCCCCcceEEEEEEeec---CceeEEEEEecCCccCcccceEEEEEEEEccCCEEEEEEEE-eecccccc
Confidence            999999999999999999999999888   88999999988777899999999999999877889999988 46999999


Q ss_pred             eecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCC-CcceeeEEeCC
Q 019518          168 SLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPG-LGYDHNYVLDC  246 (340)
Q Consensus       168 ~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~-~~~D~~f~l~~  246 (340)
                      ++|+||||||++.  .++++|.|+++|++++++|+++||||++.+++++++||+.++.|++.+..... .++|++|++..
T Consensus       158 nlt~H~YFnL~~~--~~i~~h~L~i~a~~~l~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~d~~~~~~~  235 (329)
T d1lura_         158 ALTNHAYWNLDGS--DTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDLVITK  235 (329)
T ss_dssp             BCEECCEECSSCC--SCSTTCEEEECEEEEEEECTTSCEEEEEEECTTSTTCCTTCEETTCSCCCSSCCCCCEEEEEECC
T ss_pred             cccccceeecccc--ccccCeEEEeCcCeEEEeCccccccccccccccccccccccccccccccccccceecCCCEEEee
Confidence            9999999999863  57999999999999999999999999999999999999999999886554321 26999999764


Q ss_pred             CcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCCCCCCCCCeEECCC
Q 019518          247 GEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVRPG  326 (340)
Q Consensus       247 ~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~n~~~~~~~~L~pg  326 (340)
                      .........+++|.++.+|++|+|++++|++||||+++++. .++.|.++.++.+||||||.+|||+|+++|+.++|+||
T Consensus       236 ~~~~~~~~~~~~l~~~~sg~~l~v~t~~p~~qvYT~~~l~~-~~~~g~~~~~~~gi~lEpq~~PdA~N~~~f~~~~L~pg  314 (329)
T d1lura_         236 KTPPSTPSTYLRFWSEKSGIELSITTSYPVIHLYASKFLDC-KGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSLRPG  314 (329)
T ss_dssp             CCC----CCCEEEECTTTCEEEEEEESSSEEEEECCTTCCE-ECGGGCEECTTCCEEEEEESCTTGGGCTTSCCCEECTT
T ss_pred             cccCCCcceeEEEeCCCCceEEEEeCCCCEEEEeCCCCcCC-CCCCCCCcCCCCEEEEEccCCCCccccCCCCCeEECCC
Confidence            22111123468999999999999999999999999998753 46667888889999999999999999999999999999


Q ss_pred             CEEEEEEEEEEEe
Q 019518          327 ESYQHTMLFEFSV  339 (340)
Q Consensus       327 e~~~~~~~y~f~~  339 (340)
                      |+|++++.|+|++
T Consensus       315 e~y~~~~~y~Fs~  327 (329)
T d1lura_         315 DHYCQEIVYTFSH  327 (329)
T ss_dssp             CCEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEec
Confidence            9999999999986
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure