Citrus Sinensis ID: 019519

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA
Secondary Structure (PSIPRED)
cccccHHHHHccccccccccccccccccccEEEEcccccccHHHHHHHHHcccccEEEEEEccccccHHHHcccccccccEEEEEccccHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHHHHHcccccccEEEEccccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MRSSVLRSVKTLakpagargyssesvpdrKVAVLGaaggigqpLALLMKLNPLVSRLALydiantpgvaadvgHINTRSevagymgndqlgqaledsdvviipagvprkpgmtrddlfniNAGIVKDLCSAIAKYCPNAIVNmisnpvnstvPIAAEVFKkagtynekklfgvTTLDVVRAKtfyagkanvnvaevnvpvvgghagitilplfsqatpkanlaDEDIKALTKRTQDGGTEVVeakagkgsatLSMAYAGAIFADACLkglngvpdvvECSFVQStvtelpffaskvrlgkngveevlglgplsdfeqeGLEKLKPELKASIEKGVKFANA
Flexible Loop (DISEMBL)
mrssvlrsvktlakpagargyssesvpdRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKagtynekklfgvttLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTkrtqdggtevveakagkgsATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELkasiekgvkfana
Low Complexity Region (SEG)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYagkanvnvaevnvpvvggHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA
Disordered region (IsUnstruct)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQAT*********************************ATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPL****************************
Disordered Region (DISOPRED)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA
Disordered Region (DISEMBL)
********VKTLA************VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA
Disordered Region (DISPRO)
**************PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
P17783	347	Malate dehydrogenase, mit	N/A	no	0.941	0.922	0.9	1e-168
Q9LKA3	341	Malate dehydrogenase 2, m	yes	no	0.997	0.994	0.840	1e-167
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	0.997	0.994	0.834	1e-166
P83373	339	Malate dehydrogenase, mit	N/A	no	0.976	0.979	0.857	1e-166
P46487	347	Malate dehydrogenase, mit	N/A	no	0.997	0.976	0.858	1e-164
Q43744	341	Malate dehydrogenase, mit	N/A	no	0.997	0.994	0.805	1e-158
Q42686	373	Malate dehydrogenase, mit	N/A	no	0.902	0.823	0.705	1e-125
Q42972	356	Malate dehydrogenase, gly	no	no	0.95	0.907	0.684	1e-124
P46488	356	Malate dehydrogenase, gly	N/A	no	0.958	0.915	0.665	1e-121
P19446	356	Malate dehydrogenase, gly	N/A	no	0.958	0.915	0.659	1e-121

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  591 bits (1524), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/320 (90%), Positives = 310/320 (96%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNVPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 201 VGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 260
           +GGHAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 266

Query: 261 IFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL 320
           +FADACLKGLNGVPDVVECSFVQSTVTELPFFASKV+LGKNGVE VL LGPLSDFE+EGL
Sbjct: 267 LFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGL 326

Query: 321 EKLKPELKASIEKGVKFANA 340
           EKLKPELKASIEKG++FANA
Sbjct: 327 EKLKPELKASIEKGIQFANA 346

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1

 Score =  587 bits (1512), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 285/339 (84%), Positives = 318/339 (93%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           NGVEEVL LGPLSDFE+EGLE LK ELK+SIEKG+KFAN
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEALKAELKSSIEKGIKFAN 340

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  585 bits (1507), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 283/339 (83%), Positives = 315/339 (92%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGKANV VAEVNVPV+GGHAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECS+VQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           NGVEEVL LGPLSDFE+EGLE LKPELK+SIEKGVKFAN
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFAN 340

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  583 bits (1502), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/336 (85%), Positives = 313/336 (93%), Gaps = 4/336 (1%)

Query: 4   SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
           S++RSV  +A+    RGYSSESVP RKVAVLGAAGGIGQPLALLMKLNPLVS+L+LYDIA
Sbjct: 6   SLIRSVSRVAR----RGYSSESVPQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIA 61

Query: 64  NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
            TPGVAADV HINTRSEV GY G +QLG+ALE  DVVIIPAGVPRKPGMTRDDLFNINAG
Sbjct: 62  GTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAG 121

Query: 124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
           IV+ L +AIAKYCP+AI+NMISNPVNSTVPIA+EV KKAG Y+EKKLFGVTTLDVVRAKT
Sbjct: 122 IVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFGVTTLDVVRAKT 181

Query: 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
           FYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+D+ IKALTKRTQDGGTEVVE
Sbjct: 182 FYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDDYIKALTKRTQDGGTEVVE 241

Query: 244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGV 303
           AKAGKGSATLSMAYAGA+FADACL GLNGVPDVVECS+VQS++TELPFFASKVRLGKNGV
Sbjct: 242 AKAGKGSATLSMAYAGALFADACLXGLNGVPDVVECSYVQSSITELPFFASKVRLGKNGV 301

Query: 304 EEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           EEVL LGPLSDFE+EGL++LKPELK+SIEKG+KFAN
Sbjct: 302 EEVLDLGPLSDFEKEGLKQLKPELKSSIEKGIKFAN 337

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46487|MDHM_EUCGU Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1

 Score =  577 bits (1486), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 297/346 (85%), Positives = 319/346 (92%), Gaps = 7/346 (2%)

Query: 1   MRSSVLRSVKTLAKPAGAR------GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLV 54
           MR+S+LR +++ +  A  R       Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLV
Sbjct: 1   MRASMLRLIRSRSSSAAPRPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLV 60

Query: 55  SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
           S+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTR
Sbjct: 61  SQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTR 120

Query: 115 DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174
           DDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAE+FKKAGTYNEKKL GVT
Sbjct: 121 DDLFNINAGIVKSLCTAIAKYCPNAVVNMISNPVNSTVPIAAEIFKKAGTYNEKKLLGVT 180

Query: 175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRT 234
           TLDVVRAKTFYAGKA V V EVNVPVVGGHAGITILPLFSQA PKANLADEDIKALTKRT
Sbjct: 181 TLDVVRAKTFYAGKAKVPVEEVNVPVVGGHAGITILPLFSQAVPKANLADEDIKALTKRT 240

Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST-VTELPFFA 293
           QDGGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECSFVQS+ +TELPFFA
Sbjct: 241 QDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSSIITELPFFA 300

Query: 294 SKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           SKV+LGKNGVEEVL LGP+SD+E++GLE L PELKASIEKG+KFAN
Sbjct: 301 SKVKLGKNGVEEVLELGPMSDYEKQGLEILIPELKASIEKGIKFAN 346

Eucalyptus gunnii (taxid: 3933)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43744|MDHM_BRANA Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1

 Score =  557 bits (1435), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 273/339 (80%), Positives = 306/339 (90%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS+++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSALVRSSASAKQSLLRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L SAIAKYCP+A+VNMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
            KT YAGKANV VAEVNVP + GHAG+TILPLFSQATP+A L+ + +   TKRTQDGGTE
Sbjct: 182 VKTSYAGKANVPVAEVNVPAIVGHAGVTILPLFSQATPQAILSGDALTVTTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           V EAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECS+VQST+TELPFFASKVRLGK
Sbjct: 242 VEEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSYVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           NGVEEVL LGPLSDFE+EGLE L+P +K++IEKGVKFAN
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEALRPGIKSTIEKGVKFAN 340

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42686|MDHM_CHLRE Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/309 (70%), Positives = 265/309 (85%), Gaps = 2/309 (0%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKVAVLGAAGGIGQPL++LMK+N  VS L+LYDIA TPGVAADV HINT+++V G+   D
Sbjct: 63  RKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKD 121

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
            L +AL   D+VIIPAGVPRKPGMTRDDLF INAGIV+DL +A+ ++CP A++N+ISNPV
Sbjct: 122 GLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNIISNPV 181

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGIT 208
           NSTVPIAAE  KK G Y+++K+ GVTTLDVVRAKTFYA K  ++VA V+VPVVGGHAG+T
Sbjct: 182 NSTVPIAAEQLKKMGVYDKRKVMGVTTLDVVRAKTFYAEKNGLDVASVDVPVVGGHAGVT 241

Query: 209 ILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK 268
           ILPLFSQATPKA ++ E + ALTKRTQDGGTEVV+AKAGKGSATLSMAYA A+FAD+CL+
Sbjct: 242 ILPLFSQATPKATMSAEVLDALTKRTQDGGTEVVQAKAGKGSATLSMAYAAALFADSCLR 301

Query: 269 GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK 328
           GLNG P VVEC++V+STVT+ P+FASKV+L   GV+++  LGPLSD+E+ GL+ + PEL 
Sbjct: 302 GLNGAP-VVECTYVESTVTDAPYFASKVKLSTEGVDKIHDLGPLSDYEKAGLKAMMPELL 360

Query: 329 ASIEKGVKF 337
           ASIEKGV+F
Sbjct: 361 ASIEKGVQF 369

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/323 (68%), Positives = 256/323 (79%)

Query: 17  GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN 76
           G+   +  + P  KVA+LGA+GGIGQPLALLMK+NPLVS L LYD+ NTPGV AD+ H+N
Sbjct: 33  GSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMN 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK C
Sbjct: 93  TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 152

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV 196
           PNAIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVTTLDVVRA TF A    ++  +V
Sbjct: 153 PNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDV 212

Query: 197 NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           NVPV+GGHAG+TILPL SQ  P  +   E+I  LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct: 213 NVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMA 272

Query: 257 YAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFE 316
           YA + FADACL+GL G   +VECSFV S VTELPFFASKVRLG+ G+EE+L LGPL++FE
Sbjct: 273 YAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFE 332

Query: 317 QEGLEKLKPELKASIEKGVKFAN 339
           + GLEK K EL  SI+KGV F N
Sbjct: 333 RAGLEKAKKELAESIQKGVAFIN 355

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/335 (66%), Positives = 258/335 (77%), Gaps = 9/335 (2%)

Query: 3   SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
           SSVLR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+
Sbjct: 28  SSVLRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV 78

Query: 63  ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
            N PGV AD+ H++T + V G++G  QL +AL   D+V+IPAGVPRKPGMTRDDLF INA
Sbjct: 79  VNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINA 138

Query: 123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           GIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA 
Sbjct: 139 GIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRAN 198

Query: 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
           TF A    ++  +VNVPVVGGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVV
Sbjct: 199 TFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVV 258

Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
           EAKAG GSATLSMAYA   FADACL+GL G   VVEC+FV S VTELPFFA+KVRLG+NG
Sbjct: 259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNG 318

Query: 303 VEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           ++EV  LGPL+++E+ GLEK K EL  SIEKGV F
Sbjct: 319 IDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  434 bits (1115), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/335 (65%), Positives = 256/335 (76%), Gaps = 9/335 (2%)

Query: 3   SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
           SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+
Sbjct: 28  SSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV 78

Query: 63  ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
            N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INA
Sbjct: 79  VNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINA 138

Query: 123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           GIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA 
Sbjct: 139 GIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRAN 198

Query: 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
           TF A    ++  +V+VPVVGGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVV
Sbjct: 199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVV 258

Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
           EAKAG GSATLSMAYA   FADACL+GL G   V+EC+FV S VTELPFFASKVRLG+NG
Sbjct: 259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNG 318

Query: 303 VEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           +EEV  LGPL+++E+ GLEK K EL  SIEKGV F
Sbjct: 319 IEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
255566555	345	malate dehydrogenase, putative [Ricinus	0.997	0.982	0.880	1e-171
224114557	341	predicted protein [Populus trichocarpa]	0.985	0.982	0.867	1e-167
449438883	347	PREDICTED: malate dehydrogenase, mitocho	0.947	0.927	0.903	1e-167
126896	347	RecName: Full=Malate dehydrogenase, mito	0.941	0.922	0.9	1e-166
356517066	345	PREDICTED: malate dehydrogenase, mitocho	0.997	0.982	0.854	1e-166
255634854	345	unknown [Glycine max]	0.997	0.982	0.851	1e-165
224061310	340	predicted protein [Populus trichocarpa]	0.985	0.985	0.864	1e-165
21592905	341	mitochondrial NAD-dependent malate dehyd	0.997	0.994	0.837	1e-165
15232468	341	malate dehydrogenase 2 [Arabidopsis thal	0.997	0.994	0.840	1e-165
297853098	341	mitochondrial malate dehydrogenase [Arab	0.997	0.994	0.837	1e-165

>gi|255566555|ref|XP_002524262.1| malate dehydrogenase, putative [Ricinus communis] gi|223536453|gb|EEF38101.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 303/344 (88%), Positives = 319/344 (92%), Gaps = 5/344 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MRSS+ RSVK L   + +     RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS
Sbjct: 1   MRSSLFRSVKALGSTSSSSHLLRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            LALYDIANTPGVAADV HINTRS+V GY+G DQLG+ALE SDVVIIPAGVPRKPGMTRD
Sbjct: 61  NLALYDIANTPGVAADVSHINTRSDVKGYVGEDQLGKALEGSDVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTT
Sbjct: 121 DLFNINAGIVKGLCEAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTT 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA V VAEVNVPVVGGHAGITILPL SQATPKANL DE+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVPVAEVNVPVVGGHAGITILPLLSQATPKANLPDEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK
Sbjct: 241 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 300

Query: 296 VRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           VRLGKNGVEEVLGLGPLSD+E+EGLEKLKPEL +SIEKG+ FAN
Sbjct: 301 VRLGKNGVEEVLGLGPLSDYEKEGLEKLKPELLSSIEKGINFAN 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114557|ref|XP_002316794.1| predicted protein [Populus trichocarpa] gi|118484579|gb|ABK94163.1| unknown [Populus trichocarpa] gi|222859859|gb|EEE97406.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 294/339 (86%), Positives = 317/339 (93%), Gaps = 4/339 (1%)

Query: 5   VLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
           +LRS+K+LA    +    RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS LALY
Sbjct: 2   MLRSIKSLATSPSSHILRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVSSLALY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADV HINTRSEV+GY G  +LG+ALE +DVVIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVSHINTRSEVSGYSGEAELGKALEGADVVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK LC AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+ K+LFGVTTLDVVR
Sbjct: 122 NAGIVKGLCQAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDPKRLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           AKTFYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+D +I ALTKRTQDGGTE
Sbjct: 182 AKTFYAGKAKVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDAEITALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGAIFADACLKGLNG PDVVECS+VQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGAPDVVECSYVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           NGVEEVLGLGPLSD+E+EGLEKLKPEL++SIEKG+KFAN
Sbjct: 302 NGVEEVLGLGPLSDYEKEGLEKLKPELQSSIEKGIKFAN 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438883|ref|XP_004137217.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus] gi|449483204|ref|XP_004156521.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/322 (90%), Positives = 308/322 (95%)

Query: 19  RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
           R +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDI  TPGVAADVGH+NTR
Sbjct: 25  RTFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIGATPGVAADVGHVNTR 84

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           SEV GYMG +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPN
Sbjct: 85  SEVTGYMGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPN 144

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV 198
           A+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNV
Sbjct: 145 ALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNV 204

Query: 199 PVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
           PVVGGHAGITILPLFSQATPKANL D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYA
Sbjct: 205 PVVGGHAGITILPLFSQATPKANLTDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYA 264

Query: 259 GAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQE 318
           GA+FADACLKGLNGVPDVVECSFVQSTVTELPFFASKV+LGKNGVE VL LGPLSDFE+E
Sbjct: 265 GALFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKE 324

Query: 319 GLEKLKPELKASIEKGVKFANA 340
           GLEKL PELKASIEKG++FANA
Sbjct: 325 GLEKLMPELKASIEKGIQFANA 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126896|sp|P17783.1|MDHM_CITLA RecName: Full=Malate dehydrogenase, mitochondrial; Flags: Precursor gi|18297|emb|CAA35239.1| unnamed protein product [Citrullus lanatus subsp. vulgaris]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/320 (90%), Positives = 310/320 (96%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNVPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 201 VGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 260
           +GGHAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 266

Query: 261 IFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL 320
           +FADACLKGLNGVPDVVECSFVQSTVTELPFFASKV+LGKNGVE VL LGPLSDFE+EGL
Sbjct: 267 LFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGL 326

Query: 321 EKLKPELKASIEKGVKFANA 340
           EKLKPELKASIEKG++FANA
Sbjct: 327 EKLKPELKASIEKGIQFANA 346

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517066|ref|XP_003527211.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Glycine max]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 293/343 (85%), Positives = 318/343 (92%), Gaps = 4/343 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR 56
           M+ S+LRS+ + A    +    RGY+SE VP+RKVAVLGAAGGIGQPL+LLMKLNPLVS 
Sbjct: 2   MKPSMLRSLHSAATRGASHLSRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSS 61

Query: 57  LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
           L+LYDIA TPGVAADV HINT SEV GY G+++LG+ALE +DVVIIPAGVPRKPGMTRDD
Sbjct: 62  LSLYDIAGTPGVAADVSHINTGSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDD 121

Query: 117 LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
           LFNINAGIVK LC+AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTTL
Sbjct: 122 LFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTL 181

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQD 236
           DVVRAKTFYAGKANV VA VNVPVVGGHAGITILPLFSQATPKANL D+ IKALTKRTQD
Sbjct: 182 DVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKANLDDDVIKALTKRTQD 241

Query: 237 GGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
           GGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECSFVQSTVTELP+FASKV
Sbjct: 242 GGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPYFASKV 301

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           RLGKNGVEEVLGLGPLSDFEQ+GLE LKPELK+SIEKG+KFAN
Sbjct: 302 RLGKNGVEEVLGLGPLSDFEQQGLESLKPELKSSIEKGIKFAN 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634854|gb|ACU17786.1| unknown [Glycine max]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/343 (85%), Positives = 318/343 (92%), Gaps = 4/343 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR 56
           M+ S+LRS+ + A    +    RGY+SE VP+RKVAVLGAAGGIGQPL+LLMKLNPLVS 
Sbjct: 2   MKPSMLRSLHSAATRGASHLSRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSS 61

Query: 57  LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
           L+LYDIA TPGVAADV HINT SEV GY G+++LG+ALE +DVVIIPAGVPRKPGMTRDD
Sbjct: 62  LSLYDIAGTPGVAADVSHINTGSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDD 121

Query: 117 LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
           LFNINAGIV+ LC+AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTTL
Sbjct: 122 LFNINAGIVETLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTL 181

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQD 236
           DVVRAKTFYAGKANV VA VNVPVVGGHAGITILPLFSQATPKANL D+ IKALTKRTQD
Sbjct: 182 DVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKANLDDDVIKALTKRTQD 241

Query: 237 GGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
           GGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECSFVQSTVTELP+FASKV
Sbjct: 242 GGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPYFASKV 301

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           RLGKNGVEEVLGLGPLSDFEQ+GLE LKPELK+SIEKG+KFAN
Sbjct: 302 RLGKNGVEEVLGLGPLSDFEQQGLESLKPELKSSIEKGIKFAN 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061310|ref|XP_002300420.1| predicted protein [Populus trichocarpa] gi|222847678|gb|EEE85225.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 293/339 (86%), Positives = 314/339 (92%), Gaps = 4/339 (1%)

Query: 5   VLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
           +LRS+K+L     +    RGY+SE+VP+RKVAVLGAAGGIGQ L+LLMKLNPLVS LALY
Sbjct: 1   MLRSIKSLTTSPSSHVLRRGYASEAVPERKVAVLGAAGGIGQSLSLLMKLNPLVSNLALY 60

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADV HINTRSEV GY  + +LG+ALE +DVVIIPAGVPRKPGMTRDDLFNI
Sbjct: 61  DIANTPGVAADVSHINTRSEVVGYASDAELGKALEGADVVIIPAGVPRKPGMTRDDLFNI 120

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK LC AIAK+CPNA+VNMISNPVNSTVPIAAEVFKKAGTY+ K+LFGVTTLDVVR
Sbjct: 121 NAGIVKGLCEAIAKHCPNALVNMISNPVNSTVPIAAEVFKKAGTYDPKRLFGVTTLDVVR 180

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           AKTFYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+DE I ALTKRTQDGGTE
Sbjct: 181 AKTFYAGKAMVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDEVITALTKRTQDGGTE 240

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV+ECSFVQSTVTELPFFASKVRLGK
Sbjct: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVIECSFVQSTVTELPFFASKVRLGK 300

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           NGVEEVLGLGPLSDFE+EGLEKLKPELK+SIEKG+KFA 
Sbjct: 301 NGVEEVLGLGPLSDFEKEGLEKLKPELKSSIEKGIKFAT 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592905|gb|AAM64855.1| mitochondrial NAD-dependent malate dehydrogenase [Arabidopsis thaliana]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/339 (83%), Positives = 316/339 (93%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS  +  + A  R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSMLVRSSASAKQAAIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGKANV VAEVNVPV+GGHAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECS+VQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           NGVEEVL LGPLSDFE+EGLE LKPELK+SIEKGVKFAN
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFAN 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232468|ref|NP_188120.1| malate dehydrogenase 2 [Arabidopsis thaliana] gi|75311246|sp|Q9LKA3.1|MDHM2_ARATH RecName: Full=Malate dehydrogenase 2, mitochondrial; AltName: Full=mNAD-MDH 2; Flags: Precursor gi|8777485|dbj|BAA97065.1| NAD-dependent malate dehydrogenase [Arabidopsis thaliana] gi|15010582|gb|AAK73950.1| AT3g15020/K15M2_16 [Arabidopsis thaliana] gi|20147389|gb|AAM10404.1| AT3g15020/K15M2_16 [Arabidopsis thaliana] gi|332642083|gb|AEE75604.1| malate dehydrogenase 2 [Arabidopsis thaliana]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/339 (84%), Positives = 318/339 (93%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           NGVEEVL LGPLSDFE+EGLE LK ELK+SIEKG+KFAN
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEALKAELKSSIEKGIKFAN 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853098|ref|XP_002894430.1| mitochondrial malate dehydrogenase [Arabidopsis lyrata subsp. lyrata] gi|297340272|gb|EFH70689.1| mitochondrial malate dehydrogenase [Arabidopsis lyrata subsp. lyrata]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/339 (83%), Positives = 315/339 (92%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSMLVRSSSSAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           AKTFYAGKANV VAEVNVPV+GGHAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTE
Sbjct: 182 AKTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDVLTALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECS+VQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           NGVEEVL LGPLSDFE+EGLE LKPELK+SIEKGVKFAN
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFAN 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.994	0.991	0.795	1.3e-139
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.994	0.991	0.789	4.4e-139
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.917	0.881	0.657	3.7e-103
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.991	0.836	0.595	2.8e-98
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.985	0.997	0.590	7.4e-98
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.967	0.973	0.566	7.8e-94
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.967	0.973	0.566	1e-93
UNIPROTKB|Q32LG3	338	MDH2 "Malate dehydrogenase, mi	0.967	0.973	0.566	2.7e-93
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.967	0.973	0.566	3.4e-93
MGI|MGI:97050	338	Mdh2 "malate dehydrogenase 2,	0.967	0.973	0.569	4.3e-93

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
 Identities = 269/338 (79%), Positives = 300/338 (88%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LYD
Sbjct:     3 RSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
             +TFY                  HAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTEV
Sbjct:   183 RTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTEV 242

Query:   242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKN 301
             VEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASKVRLGKN
Sbjct:   243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGKN 302

Query:   302 GVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
             GVEEVL LGPLSDFE+EGLE LK ELK+SIEKG+KFAN
Sbjct:   303 GVEEVLDLGPLSDFEKEGLEALKAELKSSIEKGIKFAN 340

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
 Identities = 267/338 (78%), Positives = 298/338 (88%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYD
Sbjct:     3 RSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
             +TFY                  HAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTEV
Sbjct:   183 RTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEV 242

Query:   242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKN 301
             VEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECS+VQST+TELPFFASKVRLGKN
Sbjct:   243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKN 302

Query:   302 GVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
             GVEEVL LGPLSDFE+EGLE LKPELK+SIEKGVKFAN
Sbjct:   303 GVEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFAN 340

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 205/312 (65%), Positives = 239/312 (76%)

Query:    27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
             P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+AN PGV AD+ H++T + V G++G
Sbjct:    41 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLG 100

Query:    87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
               QL +AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ L  AIAK CP AIVN+ISN
Sbjct:   101 QPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISN 160

Query:   147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
             PVNSTVPIAAEVFKKAGT++ KKL GVT LDVVRA TF                   HAG
Sbjct:   161 PVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAG 220

Query:   207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266
             +TILPL SQ  P  +   ++I+ LT R Q+GGTEVVEAKAG GSATLSMAYA   FADAC
Sbjct:   221 VTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADAC 280

Query:   267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE 326
             L+GL G  ++VEC++V S VTELPFFASKVRLG+ G++EV GLGPL+++E+ GLEK K E
Sbjct:   281 LRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKKE 340

Query:   327 LKASIEKGVKFA 338
             L  SI KGV FA
Sbjct:   341 LSVSIHKGVTFA 352

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 202/339 (59%), Positives = 246/339 (72%)

Query:     3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
             +  LR   T A+ +  + Y  +     KVAVLGAAGGIGQPL+LL+K++PLVS L LYDI
Sbjct:    57 AKTLRGSVTKAQTSDKKPYGFKINASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDI 116

Query:    63 ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
             AN  GVAAD+ H NT S+V  + G  +L   L+D +VV+IPAGVPRKPGMTRDDLFNINA
Sbjct:   117 ANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINA 176

Query:   123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              IVK L  A+A+ CPNA +++ISNPVNSTVPIAAEV KK G Y+ KKLFGVTTLDVVRA 
Sbjct:   177 NIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRAN 236

Query:   183 TFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
             TF                   HAGITILPL S+  P  N  DE+I+ LT R Q+ GTEVV
Sbjct:   237 TFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVV 296

Query:   243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
             +AKAG GSATLSMAYA A F ++ L+ L+G  DV ECSFV+ST+T+LPFFAS+V++GKNG
Sbjct:   297 DAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNG 356

Query:   303 VEEVL--GLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
             +E V+   L  L+++EQ+ LE LK ELKASI+KGV FAN
Sbjct:   357 LEAVIESDLQGLTEYEQKALEALKVELKASIDKGVAFAN 395

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
 Identities = 199/337 (59%), Positives = 253/337 (75%)

Query:     5 VLRSV-KTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
             +L+ V K LA   G R +S     + KV V GAAGGIGQPL+LL+K NPLV+ LALYDI 
Sbjct:     1 MLKQVTKQLALQ-GVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIV 59

Query:    64 NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
             +TPGVAAD+ HI+T+S+ AG++G DQLG +L+ SDVV+IPAGVPRKPGMTRDDLFN+NAG
Sbjct:    60 HTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAG 119

Query:   124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
             I+KD+ ++IAK CP A+V +I+NPVN+ VPIAAE+ KKAG Y+ K+LFGV+TLDVVRA+ 
Sbjct:   120 IIKDISNSIAKNCPKALVAIITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARA 179

Query:   184 FYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
             F                   H+G+TILP+ SQ+ P      + I+ LT R Q+ GTEVV+
Sbjct:   180 FIGHALGVDPQTVQIPVIGGHSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVK 239

Query:   244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGV 303
             AKAG GSATLSMAYAGA FA + LKGLNG  +V+ECS+VQSTVTE  FF++ + LGKNGV
Sbjct:   240 AKAGAGSATLSMAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGV 299

Query:   304 EEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA 340
             +E LGL  L+D+E++ LE   PELK +I+KG+ FANA
Sbjct:   300 QENLGLPKLNDYEKKLLEAAIPELKKNIQKGIDFANA 336

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 188/332 (56%), Positives = 240/332 (72%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   306 VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
              LG+G +S FE++ + +  PELKASI+KG +F
Sbjct:   302 NLGIGKISPFEEKMIAEAIPELKASIKKGEEF 333

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 188/332 (56%), Positives = 239/332 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+    + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   306 VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
              LG+G +S FE++ + +  PELKASI+KG +F
Sbjct:   302 NLGIGKISPFEEKMIAEAIPELKASIKKGEEF 333

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q32LG3 MDH2 "Malate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 188/332 (56%), Positives = 238/332 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK     + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKDLDPARVNVPVIGGHAGKTIIPLISQCTPKVEFPQDQLTTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   306 VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
              LG+G +S FE++ + +  PELKASI+KG +F
Sbjct:   302 NLGIGKVSPFEEKMIAEAIPELKASIKKGEEF 333

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 188/332 (56%), Positives = 240/332 (72%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPLALL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A++ +ISNPVNST+PIA EVFKK G Y+  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFI 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +L  + + A+T R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S   +  +F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQEADCAYFSTPLLLGKKGIEK 301

Query:   306 VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
              LG+G +S FE++ + +  PELKASI+KG +F
Sbjct:   302 NLGIGKISPFEEKMIAEAIPELKASIKKGEEF 333

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97050 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Mus musculus (taxid:10090)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 189/332 (56%), Positives = 238/332 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A+V +I+NPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFVQS  TE  +F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEK 301

Query:   306 VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
              LG+G ++ FE++ + +  PELKASI+KG  F
Sbjct:   302 NLGIGKITPFEEKMIAEAIPELKASIKKGEDF 333

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO;ISA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=ISO;ISA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.8053	0.9970	0.9941	N/A	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.6816	0.9147	0.8687	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.5987	0.9588	0.9644	yes	no
Q7X3X5	MDH_MORS2	1, ., 1, ., 1, ., 3, 7	0.5580	0.9	0.9807	N/A	no
Q9KUT3	MDH_VIBCH	1, ., 1, ., 1, ., 3, 7	0.5774	0.9	0.9839	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6018	0.9588	0.9644	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.8583	0.9970	0.9769	N/A	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.8571	0.9764	0.9793	N/A	no
Q9LKA3	MDHM2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8407	0.9970	0.9941	yes	no
Q0I491	MDH_HAES1	1, ., 1, ., 1, ., 3, 7	0.6025	0.9029	0.9871	yes	no
A3QB91	MDH_SHELP	1, ., 1, ., 1, ., 3, 7	0.5612	0.9	0.9839	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.6656	0.9588	0.9157	N/A	no
P17783	MDHM_CITLA	1, ., 1, ., 1, ., 3, 7	0.9	0.9411	0.9221	N/A	no
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.5705	0.9058	0.9871	yes	no
Q9ZP06	MDHM1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8348	0.9970	0.9941	no	no
Q8DEC2	MDH_VIBVU	1, ., 1, ., 1, ., 3, 7	0.5806	0.8970	0.9838	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.5987	0.9588	0.9644	yes	no
Q7MP97	MDH_VIBVY	1, ., 1, ., 1, ., 3, 7	0.5806	0.8970	0.9838	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.6848	0.9147	0.8687	N/A	no
A1S3C4	MDH_SHEAM	1, ., 1, ., 1, ., 3, 7	0.5774	0.9	0.9839	yes	no
A5UCQ1	MDH_HAEIE	1, ., 1, ., 1, ., 3, 7	0.5993	0.9029	0.9871	yes	no
A8H0U0	MDH_SHEPA	1, ., 1, ., 1, ., 3, 7	0.5612	0.9	0.9839	yes	no
B0TUH8	MDH_SHEHH	1, ., 1, ., 1, ., 3, 7	0.5612	0.9	0.9839	yes	no
A6TEQ3	MDH_KLEP7	1, ., 1, ., 1, ., 3, 7	0.5608	0.9058	0.9871	yes	no
P48364	MDH_MORS5	1, ., 1, ., 1, ., 3, 7	0.5580	0.9	0.9807	N/A	no
A5UIX3	MDH_HAEIG	1, ., 1, ., 1, ., 3, 7	0.6025	0.9029	0.9871	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5555	0.9617	0.9589	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.5957	0.9588	0.9644	yes	no
B1KGG7	MDH_SHEWM	1, ., 1, ., 1, ., 3, 7	0.5612	0.9	0.9839	yes	no
A0KG16	MDH_AERHH	1, ., 1, ., 1, ., 3, 7	0.5741	0.9	0.9839	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.5957	0.9588	0.9644	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.6597	0.9588	0.9157	N/A	no
Q5R030	MDH_IDILO	1, ., 1, ., 1, ., 3, 7	0.5641	0.9029	0.9903	yes	no
B7VID0	MDH_VIBSL	1, ., 1, ., 1, ., 3, 7	0.5673	0.9058	0.9903	yes	no
Q42686	MDHM_CHLRE	1, ., 1, ., 1, ., 3, 7	0.7055	0.9029	0.8230	N/A	no
Q12R11	MDH_SHEDO	1, ., 1, ., 1, ., 3, 7	0.5612	0.9	0.9839	yes	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.5957	0.9588	0.9644	yes	no
Q9CN86	MDH_PASMU	1, ., 1, ., 1, ., 3, 7	0.5993	0.9029	0.9871	yes	no
Q6AW21	MDH_MORJA	1, ., 1, ., 1, ., 3, 7	0.5580	0.9	0.9807	N/A	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.5705	0.9058	0.9903	yes	no
A4SIV0	MDH_AERS4	1, ., 1, ., 1, ., 3, 7	0.5709	0.9	0.9839	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5769	0.9058	0.9871	yes	no
B0UUR6	MDH_HAES2	1, ., 1, ., 1, ., 3, 7	0.5993	0.9029	0.9871	yes	no
Q87SU7	MDH_VIBPA	1, ., 1, ., 1, ., 3, 7	0.5673	0.9058	0.9903	yes	no
Q4R568	MDHM_MACFA	1, ., 1, ., 1, ., 3, 7	0.5896	0.9588	0.9644	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
3rd Layer	1.1.1.37	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XI0680	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (341 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XVI2794	citrate synthase (EC-2.3.3.1) (509 aa)						•	•		0.975
	estExt_Genewise1_v1.C_LG_XIV2957	citrate synthase (EC-2.3.3.1) (512 aa)						•	•		0.975
	estExt_fgenesh4_pm.C_1480010	citrate synthase (EC-2.3.3.1) (478 aa)				•	•	•	•		0.974
	fgenesh4_pg.C_LG_XV000664	malate synthase (EC-2.3.3.9) (554 aa)						•	•		0.940
	eugene3.00021795	aspartate ammonia-lyase (EC-4.2.1.2) (490 aa)						•	•		0.927
	estExt_Genewise1_v1.C_LG_VII3984	phosphoenolpyruvate carboxykinase (ATP) (EC-4.1.1.49) (664 aa)						•	•		0.909
	estExt_fgenesh4_pg.C_LG_II0983	phosphoenolpyruvate carboxykinase (ATP) (EC-4.1.1.49) (667 aa)						•	•		0.908
	grail3.0010034901	ATP citrate (pro-S)-lyase (EC-2.3.3.8) (608 aa)						•			0.900
	eugene3.00061692	hypothetical protein (570 aa)						•	•		0.900
	estExt_fgenesh4_pg.C_LG_XVIII0238	hypothetical protein (570 aa)						•	•		0.900

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	0.0
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-150
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-149
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-137
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	6e-86
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	5e-58
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	2e-57
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	9e-53
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	4e-50
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	4e-39
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	2e-35
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	2e-32
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	1e-31
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	2e-31
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	8e-29
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	3e-27
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	5e-25
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	9e-25
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	9e-19
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	2e-18
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	2e-18
cd00704	323	cd00704, MDH, Malate dehydrogenase	2e-17
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	2e-16
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	8e-16
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	2e-15
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-13
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	1e-12
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	1e-12
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	3e-11
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	2e-10
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	2e-06
TIGR01757	387	TIGR01757, Malate-DH_plant, malate dehydrogenase,	4e-06

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  635 bits (1639), Expect = 0.0
 Identities = 246/316 (77%), Positives = 276/316 (87%)

Query: 18  ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT 77
               +    P  KVAVLGAAGGIGQPL+LLMK+NPLVS L LYDIANTPGVAADV HINT
Sbjct: 8   RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT 67

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
            ++V G++G+DQLG AL+ +D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC A+AK+CP
Sbjct: 68  PAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP 127

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN 197
           NA+VN+ISNPVNSTVPIAAEV KKAG Y+ KKLFGVTTLDVVRA TF A K  ++ A+V+
Sbjct: 128 NALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVD 187

Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           VPVVGGHAGITILPL SQATPK +  DE+I+ALTKR Q+GGTEVVEAKAG GSATLSMAY
Sbjct: 188 VPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY 247

Query: 258 AGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQ 317
           A A FADACL+GLNG  DVVECS+VQS VTELPFFASKVRLG+NGVEEVLGLGPLS++EQ
Sbjct: 248 AAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQ 307

Query: 318 EGLEKLKPELKASIEK 333
           +GLE LKPELKASIEK
Sbjct: 308 KGLEALKPELKASIEK 323

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  560 bits (1447), Expect = 0.0
 Identities = 211/309 (68%), Positives = 254/309 (82%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KLNPLVS LALYDI NTPGVAAD+ HINT ++V GY+G ++
Sbjct: 2   KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEE 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L +AL+ +DVV+IPAGVPRKPGMTRDDLFNINAGIV+DL +A+AK CP A++ +ISNPVN
Sbjct: 62  LKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAEV KKAG Y+ K+LFGVTTLDVVRA TF A    ++ A+VNVPV+GGH+G+TI
Sbjct: 122 STVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTI 181

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           LPL SQ  P      E+I+ALT R Q GG EVV+AKAG GSATLSMAYAGA FA++ L+G
Sbjct: 182 LPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRG 241

Query: 270 LNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
           L G   V+EC++V+S VTE PFFA+ V LGKNGVE+ LGLG L+D+E++ LE   PELK 
Sbjct: 242 LKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKK 301

Query: 330 SIEKGVKFA 338
           +IEKGV F 
Sbjct: 302 NIEKGVDFV 310

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  424 bits (1093), Expect = e-150
 Identities = 189/311 (60%), Positives = 235/311 (75%), Gaps = 1/311 (0%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KL P VS L+LYDIA   GVAAD+ HI T + V G+ G + 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L  AL+ +DVV+IPAGVPRKPGMTRDDLFN+NAGIVKDL +A+A+ CP A++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAEV KK G Y+  KLFGVTTLD+VRA TF A     +  EVNVPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ   K    ++ ++AL  R Q+ GTEVV+AKAG GSATLSMA+AGA F  + ++G
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 270 LNGVPDVVECSFVQS-TVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK 328
           L G   VVEC++V+S  VTE  FFA+ + LGKNGVE+ LG+G LS FE++ L    PELK
Sbjct: 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELK 300

Query: 329 ASIEKGVKFAN 339
            +I+KG +F  
Sbjct: 301 KNIKKGEEFVA 311

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  420 bits (1083), Expect = e-149
 Identities = 177/312 (56%), Positives = 215/312 (68%), Gaps = 4/312 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLDV+R++TF A        EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL 327
           + L G   VVEC++V+       FFA  V LGKNGVEE L +G LS FEQ  LE +   L
Sbjct: 240 RALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTL 299

Query: 328 KASIEKGVKFAN 339
           K  I  G +F N
Sbjct: 300 KKDIALGEEFVN 311

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  391 bits (1007), Expect = e-137
 Identities = 187/311 (60%), Positives = 234/311 (75%), Gaps = 3/311 (0%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+K NP VS L+LYDI   PGVAAD+ HI+T ++V GY   + 
Sbjct: 10  KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGEL 69

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             +AL  +D+V+I AGVPRKPGMTRDDLFN NA IV+DL +A+A   P AIV ++SNPVN
Sbjct: 70  WEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAE  KKAG Y+ +KLFGVTTLDVVRA+ F A    +N  +VNVPVVGGH+G+TI
Sbjct: 130 STVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTI 189

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ T  + L +E ++ +T R Q GG EVV+AK G GSATLSMAYA A ++ + LK 
Sbjct: 190 VPLLSQ-TGLS-LPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKA 247

Query: 270 LNGVPDVVECSFVQSTVT-ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK 328
           L G   +VEC+FV+S +  E PFF+S V LGK GVE VL +GPL+ +E+E LE   P+LK
Sbjct: 248 LRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLK 307

Query: 329 ASIEKGVKFAN 339
            +IEKG++FA 
Sbjct: 308 KNIEKGLEFAR 318

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  261 bits (669), Expect = 6e-86
 Identities = 123/322 (38%), Positives = 169/322 (52%), Gaps = 21/322 (6%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA G +G  LA L+ L  L S L L DI      GVA D+ H          + 
Sbjct: 1   MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT 59

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   + L+ +D+V+I AGVPRKPGMTR DL   NA IVKD+  AIAKY P+AIV +++N
Sbjct: 60  GDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           PV+    IA +    +G    + +   T LD  R +TF A K  V+  +V+  V+G H G
Sbjct: 120 PVDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-G 175

Query: 207 ITILPLFSQAT----PKANLA----DEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
            T++PL+SQAT    P   L     +ED++ L +R ++ G E++EAK          A A
Sbjct: 176 DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK--GAGTYYGPAAA 233

Query: 259 GAIFADACLKGLNGVPDVVECSFVQ-STVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQ 317
            A   +A L+    V  +    ++      E  +F     LGKNGVEE+L L    D EQ
Sbjct: 234 LARMVEAILRDEKRV--LPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILELLLSDD-EQ 290

Query: 318 EGLEKLKPELKASIEKGVKFAN 339
           E L+K   ELK +IE   +   
Sbjct: 291 EKLDKSAEELKKNIELVKELVL 312

Length = 313

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  184 bits (470), Expect = 5e-58
 Identities = 77/177 (43%), Positives = 100/177 (56%), Gaps = 16/177 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPLFSQATPKANLA 223
           TTLD  RA+TF A K  V+   VNV V+G H+G          +TI+PL SQ        
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 224 DEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV--PDVVECSF 281
           D +++ L +R Q+ G EV+EAKAG  S T SMAYA A  A A L+G  GV    V    +
Sbjct: 61  DWELEELIERVQNAGYEVIEAKAG--STTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 282 VQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFA 338
                 +  +F+  V LGK+GVE+V+ + PL+DFE+E LEK   ELK  IEKG  F 
Sbjct: 119 YG--SPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKGFAFV 173

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  182 bits (463), Expect = 2e-57
 Identities = 71/146 (48%), Positives = 90/146 (61%), Gaps = 6/146 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA GG+G  LA  + L  L   L L DI      GVA D+ H +T   V G +G
Sbjct: 1   VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVG 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +AL+D+DVV+I AGVPRKPGMTR DL N NAGI KD+  AIAK  P+AIV ++SN
Sbjct: 61  GDD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    IA +V   +G   E+ +  
Sbjct: 120 PVDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  175 bits (447), Expect = 9e-53
 Identities = 109/318 (34%), Positives = 166/318 (52%), Gaps = 52/318 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAG 83
           K++++GA G +G  LA L+ L  L   + L+DI    P G A D+          +++ G
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND   + +  SDVV+I AGVPRKPGM+RDDL  INA I+KD+   I KY P+AIV +
Sbjct: 62  --TNDY--EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NPV++   +A     K   + + ++ G+   LD  R +TF A + NV+V +V   V+G
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G +++PL   +T    P  +L + E +  + +RT+ GG E+V      GSA  + A 
Sbjct: 174 GH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231

Query: 258 AGAIFADA-------------CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
           + A   +A              L+G  GV DV              +    V+LGKNGVE
Sbjct: 232 SIAEMVEAILKDKKRVLPCSAYLEGEYGVKDV--------------YVGVPVKLGKNGVE 277

Query: 305 EVLGLGPLSDFEQEGLEK 322
           +++ L  L D E+   +K
Sbjct: 278 KIIEL-ELDDEEKAAFDK 294

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  168 bits (429), Expect = 4e-50
 Identities = 110/327 (33%), Positives = 165/327 (50%), Gaps = 52/327 (15%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAGY 84
           ++++GA G +G  LA L+ L  L   + L DI    P G A D+      + + ++V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTG- 57

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             ND   + +  SDVV+I AG+PRKPGM+RDDL   NA IVK++   I KY PNAIV ++
Sbjct: 58  -TNDY--EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           +NP++        V  KA  +   ++ G+   LD  R + F A +  V+V +V   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 204 HAGITILPLFSQAT-----PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
           H G T++PL   +T         +  E+I  + +RT++GG E+V      GSA  + A A
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228

Query: 259 GAIFADACLK-------------GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            A   +A LK             G  G+ D+              F    V LGKNGVE+
Sbjct: 229 IAEMVEAILKDKKRVLPCSAYLEGEYGIKDI--------------FVGVPVVLGKNGVEK 274

Query: 306 VLGLGPLSDFEQEGLEKLKPELKASIE 332
           ++ L  L+D E+E  +K    +K  I+
Sbjct: 275 IIEL-DLTDEEKEAFDKSVESVKELID 300

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  138 bits (351), Expect = 4e-39
 Identities = 98/306 (32%), Positives = 141/306 (46%), Gaps = 47/306 (15%)

Query: 31  VAVLGAAGGIGQPLALLM--KLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMG 86
           +AV+GA G +G  LA  +      L   L LYDI      GVA D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +A +D+DVVII AGV RKPGM R DL   N  IVK++   I KY P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           PV+    I   +  +     ++K+ G+ TLD +R +   A K  V+  +V V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266
            + +P +S      ++AD  I++L     D G  +                 G       
Sbjct: 177 -SQVPDWSTVRIATSIADL-IRSLLN---DEGEILP---------------VGVR----- 211

Query: 267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE 326
             G  G+PD V        V  +P       +GKNGVEE + +  L+DFE E L+K    
Sbjct: 212 NNGQIGIPDDV--------VVSVP-----CIVGKNGVEEPIEV-GLTDFELEKLQKSADT 257

Query: 327 LKASIE 332
           LK  +E
Sbjct: 258 LKKELE 263

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  130 bits (329), Expect = 2e-35
 Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 29/305 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP-GVAADVGHINTRSEVAGYMGN 87
           K++++GA G IG  +ALL+    L   + LYD+    P G A D+ H +T       +  
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
               + ++DSDVV+I AGV RK  MTR+DL  IN  I+K +  ++ KYCPNA V  ++NP
Sbjct: 65  TNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           ++       +VF++       K+ G+   LD  R +   A K  V+  +V+  V+GGH G
Sbjct: 125 LD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH-G 179

Query: 207 ITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             ++PL           S    K  + +++I  + K+T++ G E+V+    KGSA  + A
Sbjct: 180 DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAPA 238

Query: 257 YAGAIFADACLKGLNGVPDVVECSFV---QSTVTELPFFASKVRLGKNGVEEVLGLGPLS 313
            A     +A LK       V+ CS     Q     L F    V +G  G+E+V+ L  L+
Sbjct: 239 AAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNL-FVGVPVVIGGKGIEKVIEL-ELN 293

Query: 314 DFEQE 318
             E+E
Sbjct: 294 AEEKE 298

Length = 319

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  121 bits (307), Expect = 2e-32
 Identities = 87/310 (28%), Positives = 141/310 (45%), Gaps = 38/310 (12%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGND 88
           + ++GA G +G  +A  +    L S L L D+      G A D+ H       A      
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSH-------ASAFLAT 52

Query: 89  Q---LGQALED---SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
                G    D   +D+V+I AG PRKPG TR DL N NA I++ + + + KY P+AI+ 
Sbjct: 53  GTIVRGGDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIIL 112

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           ++SNPV+    I   V +K     + ++ G  T LD  R ++  A K +V+   V+  V+
Sbjct: 113 VVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVL 168

Query: 202 GGHAGITILPLFSQAT-------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
           G H G + +  +S AT         A     D++A+ +  +  G E++     KG+    
Sbjct: 169 GEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYG 224

Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELP--FFASKVRLGKNGVEEVLGLGPL 312
           +A A A    + L        V+  S VQ     +     +    +G+ GV  +L   PL
Sbjct: 225 IATAIADIVKSILLDERR---VLPVSAVQEGQYGIEDVALSVPAVVGREGVVRIL-EIPL 280

Query: 313 SDFEQEGLEK 322
           ++ E+  L+K
Sbjct: 281 TEDEEAKLQK 290

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  120 bits (303), Expect = 1e-31
 Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 42/323 (13%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TR 78
            +  RK++++G+ G IG  +A L+ L  L   + L+DI  N P G A D+ H N    + 
Sbjct: 3   MIKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSN 60

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIA 133
           S+V G   N+   + +  SDVVI+ AG+ ++PG +     RDDL  +NA I+ ++   I 
Sbjct: 61  SKVIG--TNNY--EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIK 116

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVN 192
           KYCPNA V +I+NP++  V    ++ ++     + K+ G+   LD  R +T+ A K  VN
Sbjct: 117 KYCPNAFVIVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVN 172

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVV 242
             +V+  V+G H G  ++PL    T           K  +  E+I  + +RT++ G E+V
Sbjct: 173 PRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIV 231

Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV---QSTVTELPFFASKVRLG 299
           +   G GSA  + A A    A+A LK       V+ CS     Q    ++ +  +   +G
Sbjct: 232 DL-LGTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDI-YMGTPAVIG 286

Query: 300 KNGVEEVLGLGPLSDFEQEGLEK 322
            NGVE+++ L  L+  EQ+  ++
Sbjct: 287 ANGVEKIIEL-DLTPEEQKKFDE 308

Length = 321

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  119 bits (300), Expect = 2e-31
 Identities = 102/307 (33%), Positives = 159/307 (51%), Gaps = 28/307 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD------VGHINTRSE 80
           +K++V+GA G +G   A  +    L + L L D+      G A D      VG  +T+  
Sbjct: 2   KKISVIGA-GFVGATTAFRLAEKEL-ADLVLLDVVEGIPQGKALDMYEASPVGGFDTK-- 57

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V G   N+    A  +SD+V+I AG+PRKPGM+R+DL ++NAGIV+++   I ++ PN I
Sbjct: 58  VTG--TNNYADTA--NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPI 113

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           + ++SNP+++   +A +   K+G   E+ +     LD  R +TF A +  V+V +V   V
Sbjct: 114 IVVVSNPLDAMTYVAWQ---KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACV 170

Query: 201 VGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           +GGH G  ++PL   +T    P A+L + E I  + +RT+ GG E+V     +GSA  + 
Sbjct: 171 LGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSAYYAP 228

Query: 256 AYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDF 315
           A +     +A LK    V         Q  +  + +    V LGKNGVE +  L  L   
Sbjct: 229 AASVVEMVEAILKDRKRVLPCAAYLDGQYGIDGI-YVGVPVILGKNGVEHIYEL-KLDQS 286

Query: 316 EQEGLEK 322
           E   L K
Sbjct: 287 ELALLNK 293

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  112 bits (282), Expect = 8e-29
 Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 91/340 (26%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNP------LVSR-----------LALYDIANTPGVAADV 72
           KV+++GA+G +G   ALL+          L+SR           L +YD     G+ A++
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 73  GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI 132
              +  S+VAG             SD+VII AGVPRK GM+R DL   NA IVK     I
Sbjct: 62  KISSDLSDVAG-------------SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 133 AKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANV 191
           A++ P+  + +++NPV+     A    K++G +++ ++FG+ T LD +R K   A   NV
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 192 NVAEVNVPVVGGHAGITILPLFSQAT----PKANLA---DEDIKALTKRTQDGGTEVVEA 244
           +++EV+  ++G H G +++PL S  +    P        D D++ + +  ++ G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 245 KAGK--GSA------------------TLSMAYAGAI--FADACLKGLNGVPDVVECSFV 282
           K G   G A                  T+S    G I    D C+    GVP        
Sbjct: 224 KGGSEYGPASAISNLVRTIANDERRILTVSTYLEGEIDGIRDVCI----GVP-------- 271

Query: 283 QSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
                        V+LGKNG+EE++ +  + D E+E   K
Sbjct: 272 -------------VKLGKNGIEEIVPI-EMDDDEREAFRK 297

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score =  108 bits (272), Expect = 3e-27
 Identities = 92/330 (27%), Positives = 145/330 (43%), Gaps = 50/330 (15%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH----INTRSEVA 82
            KVA++GA G +G   A  + L  L S + L DI  A   G A D+ H    +      A
Sbjct: 1   MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 83  G-YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           G Y          + +DVV+I AG  +KPG TR DL   N  I K++   I KY P+AI+
Sbjct: 60  GDY-------ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAIL 112

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            +++NPV+    +   V  K       ++ G  T LD  R +        V+   V+  +
Sbjct: 113 LVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYI 168

Query: 201 VGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
           +G H G + + ++S A                   +E  + + +  ++   E++E    K
Sbjct: 169 IGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RK 224

Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL------GKNG 302
           G+   ++  A A   +A L+  N V  V       S++ +  +    V L      G++G
Sbjct: 225 GATYYAIGLALARIVEAILRDENSVLTV-------SSLLDGQYGIKDVALSLPCIVGRSG 277

Query: 303 VEEVLGLGPLSDFEQEGLEKLKPELKASIE 332
           VE VL   PLS+ E+E L      LK +IE
Sbjct: 278 VERVLPP-PLSEEEEEALRASAEVLKEAIE 306

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score =  102 bits (256), Expect = 5e-25
 Identities = 83/306 (27%), Positives = 136/306 (44%), Gaps = 37/306 (12%)

Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEV--AGYMGND 88
           AG +G   A  +    +   + L DI      G A D+ H    + T  ++    Y    
Sbjct: 4   AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY---- 59

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
                 +D+D+V+I AG P+KPG TR +L   N  I+K +   + K   + I  + +NPV
Sbjct: 60  ---SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV 116

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           +    I   V  K   + + ++ G  T LD  R +   A K  V+   V+  ++G H G 
Sbjct: 117 D----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEH-GD 171

Query: 208 TILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           + +P++S AT            K    D D++ + K  +D   E++     KG+    + 
Sbjct: 172 SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG 228

Query: 257 YAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFE 316
            A A   +A L   N V  V      +  + ++ +      LG+NGVEE++ L PLSD E
Sbjct: 229 MAVARIVEAILHDENRVLPVSAYLDGEYGIKDV-YIGVPAVLGRNGVEEIIEL-PLSDEE 286

Query: 317 QEGLEK 322
           +E  +K
Sbjct: 287 KEAFQK 292

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score =  101 bits (254), Expect = 9e-25
 Identities = 91/331 (27%), Positives = 140/331 (42%), Gaps = 51/331 (15%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKV ++GA G +G   A  +    +   L L DI N      +   +             
Sbjct: 1   RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKI 58

Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           + G     +D+D+V+I AG P+KPG TR DL   NA I+K +   I     + I  + SN
Sbjct: 59  KAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHA 205
           PV+    +   V +K     + ++ G  T+LD  R +   A K NV+   V+  V+G H 
Sbjct: 119 PVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEH- 173

Query: 206 GITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS----- 250
           G +    +S  T           +  L++ D+  + +  +  G E++    GKG+     
Sbjct: 174 GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYYGI 230

Query: 251 ATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
           AT       AI  D        A L G  G  DV              +      +G+NG
Sbjct: 231 ATALARIVKAILNDENAILPVSAYLDGEYGEKDV--------------YIGVPAIIGRNG 276

Query: 303 VEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           VEEV+ L  L++ EQE  EK    +K +I+K
Sbjct: 277 VEEVIEL-DLTEEEQEKFEKSADIIKENIKK 306

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 84.9 bits (211), Expect = 9e-19
 Identities = 84/343 (24%), Positives = 135/343 (39%), Gaps = 75/343 (21%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHI-----NTRSEV 81
            KV ++G  G +G   A  +    +   L + DI      G A D+ H       T+   
Sbjct: 7   NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
             Y          +D+D+V+I AG P+KPG TR DL   N  I K +   +     + I 
Sbjct: 66  GDY-------SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIF 118

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---------TTLDVVRAKTFYAGKANVN 192
            + SNPV+              TY   KL G          T+LD  R +   + K +V+
Sbjct: 119 LVASNPVDIL------------TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVD 166

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEV 241
              V+  ++G H G T  P++S A                  +ED+  + +  +D   E+
Sbjct: 167 PRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEI 225

Query: 242 VEAKAGKGSATLSMAYA---GAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELP 290
           +E K G     ++MA A    AI  +        A L+G  G  DV              
Sbjct: 226 IEKK-GATYYGIAMALARITKAILNNENAVLPVSAYLEGQYGEEDV-------------- 270

Query: 291 FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           +      + +NG+ E++ L PL+D E++        LK  +++
Sbjct: 271 YIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEIMDE 312

Length = 315

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 93/339 (27%), Positives = 136/339 (40%), Gaps = 68/339 (20%)

Query: 30  KVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH-------INT 77
           K+ V+GA G +G   L   + L  L S + L D+    GVA     D  H        NT
Sbjct: 1   KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDV--NEGVAEGEALDFHHATALTYSTNT 56

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT--RDDLFNINAGIVKDLCSAIAKY 135
           +     Y           D+D+++I AG    PG T  R DL   NA I++++   I K 
Sbjct: 57  KIRAGDY-------DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV 109

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
              A++ +I+NP++  V IAA  F     Y   K+ G  T LD  R +   A K  V+  
Sbjct: 110 TKEAVIILITNPLDIAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPK 165

Query: 195 EVNVPVVGGHAGITILPLFSQATPKANLADE----------DIKALTKRTQDGGTEVVEA 244
            V   V+G H G    P++S         DE          D   L +       +V   
Sbjct: 166 NVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR 224

Query: 245 KAGKGSATLSMA---YAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFA 293
           K G  +A ++ +      AI  D          L G  G+ DV   +    TV       
Sbjct: 225 K-GWTNAGIAKSASRLIKAILLDERSILPVCTLLSGEYGLSDV---ALSLPTV------- 273

Query: 294 SKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE 332
               +G  G+E VL + PL ++E E L K    ++ +IE
Sbjct: 274 ----IGAKGIERVLEI-PLDEWELEKLHKSAKAIRETIE 307

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 102/331 (30%), Positives = 136/331 (41%), Gaps = 48/331 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        L  K  P+V  L L DI         V       E  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGV-----AMELE 57

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +      +A +D D  ++    PRKPGM R DL + N  I K+   A+ K
Sbjct: 58  DCAFPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNK 117

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA+   K A     K    +T LD  RAK   A KA V V
Sbjct: 118 VAKKDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPV 174

Query: 194 AEV-NVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAK 245
           ++V NV + G H+  T +P F+ AT       E IK             Q  G  V+EA+
Sbjct: 175 SDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR 233

Query: 246 AGKGSATLSMAYAGAIFADACLKGLNGVP--DVVECSFVQST-----VTELPFFASKVRL 298
            G  SA  S A A     D     + G P  D V    V S      + E   F+  V  
Sbjct: 234 -GASSA-ASAANAA---IDHVRDWVTGTPEGDWVSMG-VYSDGNPYGIPEGIIFSFPVTC 287

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
             +G  E++   PL DF +  L+  + EL  
Sbjct: 288 KGDGEWEIVEGLPLDDFVRGKLDATEDELLE 318

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 68/205 (33%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
            V + GAAG IG  L        L     P++  L L DI   P + A  G      E  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI--PPAMKALEG---VVMELQ 54

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 + G +      +A +D DV I+    PRKPGM R DL   NA I K+   A+ K
Sbjct: 55  DCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK 114

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
              P   V ++ NP N+   IA    K A     K    +T LD  RAK   A K  V V
Sbjct: 115 VAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRV 171

Query: 194 AEV-NVPVVGGHAGITILPLFSQAT 217
           ++V NV + G H+  T +P  S A 
Sbjct: 172 SDVKNVIIWGNHSN-TQVPDLSNAV 195

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 87/328 (26%), Positives = 136/328 (41%), Gaps = 66/328 (20%)

Query: 30  KVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           KV V+G    G+   +++L K   L   L L D+      G A D+ H       + ++ 
Sbjct: 5   KVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GSAFLK 56

Query: 87  N-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           N     D+      +S VVI+ AG  +  G +R DL   N  I K +   + KY PNAI+
Sbjct: 57  NPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL 116

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            ++SNPV+    I   V  K     + ++ G    LD  R +   A +  V  + V+  +
Sbjct: 117 LVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWI 172

Query: 201 VGGH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           +G H             AG+ +  L        +   E  K + K+  D   EV+     
Sbjct: 173 IGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKD--PEKWKEVHKQVVDSAYEVI---KL 227

Query: 248 KGSATLSMAYAGAIFADA-------------CLKGLNGVPDVVECSFVQSTVTELPFFAS 294
           KG  + ++  + A   DA              +KGL+G+ D V  S        LP    
Sbjct: 228 KGYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLS--------LP---- 275

Query: 295 KVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
              LG+NG+  V+   PL++ EQE L+K
Sbjct: 276 -CILGENGITHVIKQ-PLTEEEQEKLQK 301

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 76.5 bits (189), Expect = 8e-16
 Identities = 95/340 (27%), Positives = 131/340 (38%), Gaps = 68/340 (20%)

Query: 30  KVAVLGAAGGIGQPLALLMKL---------NPLVSRLALYDIANT----PGVA---ADVG 73
           +VAV GAAG IG   +LL ++          P++  L L ++        GVA    D  
Sbjct: 4   RVAVTGAAGQIGY--SLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMELEDCA 59

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                  V      D    A +D+D  ++    PR PGM R DL   N  I      A+ 
Sbjct: 60  FPLLAEIVIT----DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALN 115

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                +  V ++ NP N+   IA    K A          +T LD  RAK+  A KA V 
Sbjct: 116 DVASRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVP 172

Query: 193 VAEV-NVPVVGGHAGITILPLFSQATPKANLADEDI-------KALTKRTQDGGTEVVEA 244
           V +V N+ + G H+  T  P F+ AT     A E I              Q  G  +++A
Sbjct: 173 VTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA 231

Query: 245 KAGKGSATLSMAYA--------------GAIFADA-CLKGLNGVPDVVECSFVQSTVTEL 289
           + G  SA  S A A              G  F+ A    G  G+P+ +  SF        
Sbjct: 232 R-GASSAA-SAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSF-------- 281

Query: 290 PFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
           P     VR    G E V GL  + DF +E ++    EL  
Sbjct: 282 P-----VRSKGGGYEIVEGL-EIDDFAREKIDATLAELLE 315

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 72/261 (27%), Positives = 106/261 (40%), Gaps = 49/261 (18%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSR-----------LALYDIANTPGVAADVGHINTR 78
           +V V GAAG I   L       P++++           L L DI         V      
Sbjct: 4   RVLVTGAAGQIAYSLL------PMIAKGDVFGPDQPVILHLLDIPPALKALEGV-----V 52

Query: 79  SE--------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS 130
            E        +   +      +A +D DV I+   +PRK GM R DL   N  I K+   
Sbjct: 53  MELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGE 112

Query: 131 AIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA 189
           A+ KY   N  V ++ NP N+   I     K A +  ++    +T LD  RAK+  A K 
Sbjct: 113 ALDKYAKKNVKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKL 169

Query: 190 NVNVAEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTK-----------RTQDG 237
            V V++V NV + G H+  T  P  + AT + N   +  +   K             Q  
Sbjct: 170 GVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKR 228

Query: 238 GTEVVEAKAGKGSATLSMAYA 258
           G  V++A+  K S+ +S A A
Sbjct: 229 GAAVIKAR--KLSSAMSAAKA 247

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 72/257 (28%), Positives = 103/257 (40%), Gaps = 41/257 (15%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV- 81
           +V V GAAG IG  L        +L K  P++  L L DI     V   V       E+ 
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGV-----VMELM 53

Query: 82  -------AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                   G +       A  D DV I+    PRK GM R DL + N  I K+   A+ K
Sbjct: 54  DCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK 113

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   + +     A +   K    +T LD  RA    A +A V V
Sbjct: 114 LAKKDCKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPV 170

Query: 194 AEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR-----------TQDGGTEV 241
           ++V NV + G H+  T  P  + AT       + ++   K             Q  G  +
Sbjct: 171 SDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAI 229

Query: 242 VEAKAGKGSATLSMAYA 258
           + A+  K S+ LS A A
Sbjct: 230 IRAR--KLSSALSAAKA 244

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 67.6 bits (165), Expect = 1e-12
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNA 139
           +AG +   +L +A +D D   + A VP KPG  R DL   N  I K    A+++Y  P  
Sbjct: 45  LAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTV 104

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP 199
            V +I NPVN+   +A      A   + +    +  LD  RA +  A K  V V  +   
Sbjct: 105 KVLVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 200 VVGGHAGITILPLFSQAT 217
           VV G+   +++   + A 
Sbjct: 162 VVWGNHAESMVADLTHAE 179

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 78/250 (31%), Positives = 106/250 (42%), Gaps = 44/250 (17%)

Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P+   L L +I   P + A  G      E  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPV--ILQLLEI--PPALKALEG---VVMELD 58

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +  D    A +D+DV ++    PR PGM R DL   N  I      A+ +
Sbjct: 59  DCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE 118

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA    K A     +    +T LD  RA +  A KA V V
Sbjct: 119 VAARDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPV 175

Query: 194 AEV-NVPVVGGHAGITILPLFSQAT----PKAN-------LADEDIKALTKRTQDGGTEV 241
           A++  + V G H+  T  P F  AT    P A        L D  I  + KR    G  +
Sbjct: 176 ADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKR----GAAI 230

Query: 242 VEAKAGKGSA 251
           +EA+ G  SA
Sbjct: 231 IEAR-GASSA 239

Length = 326

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 80/323 (24%), Positives = 137/323 (42%), Gaps = 36/323 (11%)

Query: 22  SSESVPDR---KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGH-- 74
           SS   P R   KV+V+G  G +G  +A  +    L   LAL D+      G   D+ H  
Sbjct: 28  SSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA 86

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
               R+++               SD+ I+ AG  + PG +R +L   N  + + +   +A
Sbjct: 87  AFLPRTKILA----STDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELA 142

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
           KY P+ I+ ++SNPV+    +A   +K +G    + +   T LD  R +   A   +VN 
Sbjct: 143 KYSPDTILLIVSNPVDVLTYVA---WKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNA 199

Query: 194 AEVNVPVVGGH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
            +V   +VG H              G+ +L    +   +     E ++ + +   D   E
Sbjct: 200 QDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQ--QIAYEKETLEEIHRAVVDSAYE 257

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFAS-KVRLG 299
           V++    KG  + ++ Y+ A    + L+    +  V   +     + E   F S   +LG
Sbjct: 258 VIKL---KGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLG 314

Query: 300 KNGVEEVLGLGPLSDFEQEGLEK 322
           +NGV  V+ +  L+D E E L K
Sbjct: 315 RNGVLGVVNV-HLTDEEAERLRK 336

Length = 350

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 19/180 (10%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150
           +A +  ++ ++  G PRK GM R D+ + N  I K   SA+ K+  P+  V +++NP N+
Sbjct: 54  EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANT 113

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITI 209
              I  E    A +  EK +  +T LD  RA    + +  V V++V NV + G H+  T 
Sbjct: 114 NALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS-TQ 169

Query: 210 LPLFSQATPKANLADEDIKALT-----------KRTQDGGTEVVEAKAGKGSATLSMAYA 258
            P  + AT K    ++ ++ L               Q  G  +++A+  K S+ LS A +
Sbjct: 170 YPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASS 227

Length = 309

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 95  EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNSTVP 153
           +D++  ++    PR PGM R DL +IN  I  +   A+      N  V ++ NP N+   
Sbjct: 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNAL 234

Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPL 212
           I     K A     K    +T LD  RAK   A KA V   +V NV + G H+  T +P 
Sbjct: 235 IC---LKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPD 290

Query: 213 FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           F  A        E I    K  ++  T  V+ + G
Sbjct: 291 FLNAKINGLPVKEVITD-HKWLEEEFTPKVQKRGG 324

Length = 444

>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 52/158 (32%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS 150
           +  ED+D  ++    PR PGM R DL +IN  I  D   A+      N  V ++ NP N+
Sbjct: 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITI 209
              IA    K A     K    +T LD  RAK   A K+      V NV + G H+  T 
Sbjct: 176 NALIA---MKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQ 231

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           +P F  A      A E IK  TK  ++  T  V+ + G
Sbjct: 232 VPDFVNAKIGGRPAKEVIKD-TKWLEEEFTPTVQKRGG 268

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
PLN00106	323	malate dehydrogenase	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
PLN02602	350	lactate dehydrogenase	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PLN00135	309	malate dehydrogenase	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
PRK15076	431	alpha-galactosidase; Provisional	100.0
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	100.0
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.97
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.96
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.96
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.87
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.86
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.82
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.75
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.68
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.62
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.62
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.6
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.59
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.58
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.58
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.55
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.55
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.52
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.49
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.45
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.43
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.42
PLN02206	442	UDP-glucuronate decarboxylase	98.37
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.33
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.31
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.3
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.29
PLN02427	386	UDP-apiose/xylose synthase	98.29
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.26
PLN00198	338	anthocyanidin reductase; Provisional	98.25
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.25
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.22
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.2
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.19
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.19
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.18
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.18
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.17
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.17
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.13
PLN02650	351	dihydroflavonol-4-reductase	98.13
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.12
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.12
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.07
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.04
CHL00194	317	ycf39 Ycf39; Provisional	98.02
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.02
PLN03209	576	translocon at the inner envelope of chloroplast su	97.96
PLN02214	342	cinnamoyl-CoA reductase	97.95
PLN02572	442	UDP-sulfoquinovose synthase	97.93
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	97.92
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.91
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	97.91
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	97.89
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	97.87
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.86
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	97.86
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.85
PLN02778	298	3,5-epimerase/4-reductase	97.85
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	97.82
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	97.82
PLN02695	370	GDP-D-mannose-3',5'-epimerase	97.82
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.82
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.78
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.78
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.76
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.74
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.73
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.7
PLN02260	668	probable rhamnose biosynthetic enzyme	97.7
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.69
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.69
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.69
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.68
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.68
PLN02583	297	cinnamoyl-CoA reductase	97.67
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.67
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.65
PRK06194	287	hypothetical protein; Provisional	97.64
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	97.64
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.63
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.62
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.59
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.58
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.58
PLN02240	352	UDP-glucose 4-epimerase	97.57
PRK07201	657	short chain dehydrogenase; Provisional	97.55
PF11975	232	Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term	97.55
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.53
PLN02653	340	GDP-mannose 4,6-dehydratase	97.5
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.5
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.48
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.46
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.43
PRK12320	699	hypothetical protein; Provisional	97.43
PLN02686	367	cinnamoyl-CoA reductase	97.42
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.4
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.38
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.36
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.35
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.34
PLN02253	280	xanthoxin dehydrogenase	97.33
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.29
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.29
PRK05875	276	short chain dehydrogenase; Provisional	97.29
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.29
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.29
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	97.28
PRK05865	854	hypothetical protein; Provisional	97.28
PRK08267	260	short chain dehydrogenase; Provisional	97.25
PRK07680	273	late competence protein ComER; Validated	97.18
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.17
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.16
PRK05717	255	oxidoreductase; Validated	97.15
PRK14982	340	acyl-ACP reductase; Provisional	97.14
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.14
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.14
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.12
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.11
PRK07326	237	short chain dehydrogenase; Provisional	97.11
PRK07069	251	short chain dehydrogenase; Validated	97.1
PRK12829	264	short chain dehydrogenase; Provisional	97.09
PRK07102	243	short chain dehydrogenase; Provisional	97.08
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.08
PLN02688	266	pyrroline-5-carboxylate reductase	97.07
PRK07417	279	arogenate dehydrogenase; Reviewed	97.07
PRK07806	248	short chain dehydrogenase; Provisional	97.07
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.06
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.04
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.04
PRK06182	273	short chain dehydrogenase; Validated	97.03
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.01
PRK09135	249	pteridine reductase; Provisional	97.01
PRK06180	277	short chain dehydrogenase; Provisional	97.0
PRK12828	239	short chain dehydrogenase; Provisional	97.0
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.99
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.99
PRK06482	276	short chain dehydrogenase; Provisional	96.98
PRK06545	359	prephenate dehydrogenase; Validated	96.98
PRK08655	437	prephenate dehydrogenase; Provisional	96.97
PRK07067	257	sorbitol dehydrogenase; Provisional	96.97
PRK08643	256	acetoin reductase; Validated	96.97
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.95
PRK08278	273	short chain dehydrogenase; Provisional	96.95
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.94
PLN02996	491	fatty acyl-CoA reductase	96.94
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.94
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.93
PRK12939	250	short chain dehydrogenase; Provisional	96.92
TIGR01746	367	Thioester-redct thioester reductase domain. It has	96.92
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.91
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.91
PRK06914	280	short chain dehydrogenase; Provisional	96.9
PRK10538	248	malonic semialdehyde reductase; Provisional	96.89
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.89
PRK06172	253	short chain dehydrogenase; Provisional	96.89
PRK06924	251	short chain dehydrogenase; Provisional	96.89
PRK12367	245	short chain dehydrogenase; Provisional	96.88
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.88
PRK08219	227	short chain dehydrogenase; Provisional	96.87
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.87
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.86
PLN02256	304	arogenate dehydrogenase	96.85
PLN02260	668	probable rhamnose biosynthetic enzyme	96.85
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.85
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.82
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.82
PLN00016	378	RNA-binding protein; Provisional	96.82
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.82
PRK07063	260	short chain dehydrogenase; Provisional	96.82
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.81
PRK06701	290	short chain dehydrogenase; Provisional	96.81
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.8
PRK07814	263	short chain dehydrogenase; Provisional	96.8
PRK05876	275	short chain dehydrogenase; Provisional	96.78
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.77
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.77
PRK07832	272	short chain dehydrogenase; Provisional	96.76
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.74
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.74
PRK12480	330	D-lactate dehydrogenase; Provisional	96.73
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.73
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.69
PRK07576	264	short chain dehydrogenase; Provisional	96.69
PRK07024	257	short chain dehydrogenase; Provisional	96.68
PRK07774	250	short chain dehydrogenase; Provisional	96.68
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.67
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.67
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	96.66
PLN02712	667	arogenate dehydrogenase	96.65
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.64
PRK06841	255	short chain dehydrogenase; Provisional	96.64
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.63
PRK08251	248	short chain dehydrogenase; Provisional	96.63
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.63
PRK08263	275	short chain dehydrogenase; Provisional	96.63
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.62
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.61
PRK05993	277	short chain dehydrogenase; Provisional	96.6
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	96.6
PRK07060	245	short chain dehydrogenase; Provisional	96.6
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.6
PRK12937	245	short chain dehydrogenase; Provisional	96.59
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.59
PRK07856	252	short chain dehydrogenase; Provisional	96.59
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.58
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.58
PRK07890	258	short chain dehydrogenase; Provisional	96.57
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.57
PRK12827	249	short chain dehydrogenase; Provisional	96.56
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.56
PRK06181	263	short chain dehydrogenase; Provisional	96.55
PRK05866	293	short chain dehydrogenase; Provisional	96.55
PRK08265	261	short chain dehydrogenase; Provisional	96.54
PRK08628	258	short chain dehydrogenase; Provisional	96.54
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.54
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.53
PRK09291	257	short chain dehydrogenase; Provisional	96.53
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.53
PRK12746	254	short chain dehydrogenase; Provisional	96.52
PRK05650	270	short chain dehydrogenase; Provisional	96.49
PRK09134	258	short chain dehydrogenase; Provisional	96.49
PRK08589	272	short chain dehydrogenase; Validated	96.48
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.48
PRK06057	255	short chain dehydrogenase; Provisional	96.47
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.47
PRK08507	275	prephenate dehydrogenase; Validated	96.47
PRK06197	306	short chain dehydrogenase; Provisional	96.46
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.46
PRK06101	240	short chain dehydrogenase; Provisional	96.46
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.44
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.44
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.43
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.41
PRK06138	252	short chain dehydrogenase; Provisional	96.41
PRK07074	257	short chain dehydrogenase; Provisional	96.41
PRK06500	249	short chain dehydrogenase; Provisional	96.39
PRK05867	253	short chain dehydrogenase; Provisional	96.39
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.38
PRK09186	256	flagellin modification protein A; Provisional	96.38
PRK05854	313	short chain dehydrogenase; Provisional	96.37
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.36
PRK06128	300	oxidoreductase; Provisional	96.36
COG2910	211	Putative NADH-flavin reductase [General function p	96.36
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.35
PLN02780	320	ketoreductase/ oxidoreductase	96.35
PRK06198	260	short chain dehydrogenase; Provisional	96.34
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.34
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.31
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.31
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.31
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.3
PRK12742	237	oxidoreductase; Provisional	96.29
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.29
PRK05693	274	short chain dehydrogenase; Provisional	96.29
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.28
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.28
PLN02712	667	arogenate dehydrogenase	96.28
PRK09242	257	tropinone reductase; Provisional	96.28
PLN02503	605	fatty acyl-CoA reductase 2	96.27
PRK13243	333	glyoxylate reductase; Reviewed	96.27
PRK08226	263	short chain dehydrogenase; Provisional	96.27
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.26
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.26
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.25
PRK07062	265	short chain dehydrogenase; Provisional	96.25
PRK08818	370	prephenate dehydrogenase; Provisional	96.23
PRK07109	334	short chain dehydrogenase; Provisional	96.23
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.23
PRK07831	262	short chain dehydrogenase; Provisional	96.23
PRK06196	315	oxidoreductase; Provisional	96.22
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.21
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.2
PLN02928	347	oxidoreductase family protein	96.2
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.19
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.19
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.19
PRK06523	260	short chain dehydrogenase; Provisional	96.18
PRK12744	257	short chain dehydrogenase; Provisional	96.18
PRK07574	385	formate dehydrogenase; Provisional	96.17
PRK06179	270	short chain dehydrogenase; Provisional	96.16
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.16
PRK05884	223	short chain dehydrogenase; Provisional	96.16
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.15
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.15
PRK07023	243	short chain dehydrogenase; Provisional	96.14
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.14
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.13
PRK07454	241	short chain dehydrogenase; Provisional	96.13
PRK06953	222	short chain dehydrogenase; Provisional	96.12
PRK08703	239	short chain dehydrogenase; Provisional	96.12
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.11
PRK09072	263	short chain dehydrogenase; Provisional	96.11
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.1
PRK08264	238	short chain dehydrogenase; Validated	96.1
PRK05872	296	short chain dehydrogenase; Provisional	96.1
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.09
PRK05855	582	short chain dehydrogenase; Validated	96.09
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.09
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.08
PRK06949	258	short chain dehydrogenase; Provisional	96.08
PRK07478	254	short chain dehydrogenase; Provisional	96.07
PRK07035	252	short chain dehydrogenase; Provisional	96.07
PRK07577	234	short chain dehydrogenase; Provisional	96.06
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.05
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.05
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.03
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.03
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	96.03
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	96.02
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.01
PRK07825	273	short chain dehydrogenase; Provisional	95.99
PRK07677	252	short chain dehydrogenase; Provisional	95.98
TIGR02415	254	23BDH acetoin reductases. One member of this famil	95.97
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.97
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.97
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	95.96
PRK12747	252	short chain dehydrogenase; Provisional	95.95
PRK07985	294	oxidoreductase; Provisional	95.94
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.91
PRK06139	330	short chain dehydrogenase; Provisional	95.91
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.91
PRK08324	681	short chain dehydrogenase; Validated	95.91
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	95.89
PRK08339	263	short chain dehydrogenase; Provisional	95.88
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.88
PRK06114	254	short chain dehydrogenase; Provisional	95.88
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.87
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.86
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.86
PRK06398	258	aldose dehydrogenase; Validated	95.85
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.83
PRK12743	256	oxidoreductase; Provisional	95.82
PRK08605	332	D-lactate dehydrogenase; Validated	95.79
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	95.78
PLN03139	386	formate dehydrogenase; Provisional	95.78
PRK12824	245	acetoacetyl-CoA reductase; Provisional	95.78
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.75
PRK08177	225	short chain dehydrogenase; Provisional	95.74
PRK07904	253	short chain dehydrogenase; Provisional	95.73
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.73
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.72
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.72
PRK09009	235	C factor cell-cell signaling protein; Provisional	95.71
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.71
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	95.69
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.69
KOG0409	327	consensus Predicted dehydrogenase [General functio	95.68
PRK06125	259	short chain dehydrogenase; Provisional	95.64
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.64
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.61
PRK06947	248	glucose-1-dehydrogenase; Provisional	95.6
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.59
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.58
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.58
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.57
PRK08291	330	ectoine utilization protein EutC; Validated	95.56
PRK06940	275	short chain dehydrogenase; Provisional	95.54
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.54
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.53
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.52
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.51
PRK08223	287	hypothetical protein; Validated	95.49
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.49
PRK09496	453	trkA potassium transporter peripheral membrane com	95.48
PRK07775	274	short chain dehydrogenase; Provisional	95.47
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.47
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.46
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	95.45
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.44
PRK08618	325	ornithine cyclodeaminase; Validated	95.43
PRK12938	246	acetyacetyl-CoA reductase; Provisional	95.41
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.41
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.41
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.4
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.39
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.36
PRK06407	301	ornithine cyclodeaminase; Provisional	95.36
PLN02383	344	aspartate semialdehyde dehydrogenase	95.31
PRK06123	248	short chain dehydrogenase; Provisional	95.31
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.28
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.27
PLN02494	477	adenosylhomocysteinase	95.25
PRK06484	520	short chain dehydrogenase; Validated	95.25
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	95.24
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.22
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	95.21
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.21
PRK07340	304	ornithine cyclodeaminase; Validated	95.2
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.18
PRK06436	303	glycerate dehydrogenase; Provisional	95.13
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	95.13
PRK05599	246	hypothetical protein; Provisional	95.11
PRK07201	657	short chain dehydrogenase; Provisional	95.11
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.1
PRK06141	314	ornithine cyclodeaminase; Validated	95.08
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.01
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.98
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	94.96
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.94
PRK07589	346	ornithine cyclodeaminase; Validated	94.92
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.89
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.88
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.88
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	94.88
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.87
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.86
PRK08017	256	oxidoreductase; Provisional	94.86
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.85
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.85
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.84
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	94.82
PRK06823	315	ornithine cyclodeaminase; Validated	94.81
PRK07578	199	short chain dehydrogenase; Provisional	94.81
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.81
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.8
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.79
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	94.75
PRK06484	520	short chain dehydrogenase; Validated	94.75
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.74
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	94.73
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.72
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.67
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.65
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.65
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	94.63
PRK07877	722	hypothetical protein; Provisional	94.63
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.59
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	94.57
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.56
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.53
PRK06483	236	dihydromonapterin reductase; Provisional	94.53
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	94.52
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.52
PRK08862	227	short chain dehydrogenase; Provisional	94.48
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.46
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.44
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.41
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.37
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.36
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.35
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.35
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.34
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	94.3
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.28
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.28
PRK06199	379	ornithine cyclodeaminase; Validated	94.26
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.23
PRK07041	230	short chain dehydrogenase; Provisional	94.22
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.19
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.19
PRK08303	305	short chain dehydrogenase; Provisional	94.16
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	94.15
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.11
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.1
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	94.1
PLN02306	386	hydroxypyruvate reductase	94.06
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	94.05
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.02
PRK06046	326	alanine dehydrogenase; Validated	94.02
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.01

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=9.9e-68  Score=497.34  Aligned_cols=309  Identities=60%  Similarity=0.929  Sum_probs=275.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~~  109 (340)
                      ||+||||+|+||+++++.|+.+++++||+|+|++++.|+++||+|.....++..+++.+|++++++|||+||+++|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999988999999999999999999999999998889999999987544566433223567899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH-HHHHhCCCCCCceEeccchhHHHHHHHHHHH
Q 019519          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (340)
Q Consensus       110 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~-~~~~sg~~~~~kviG~~~ld~~R~~~~la~~  188 (340)
                      +|++|.+++..|.++++++++.|.+++|++++|++|||+|++++++++ +++.+| +|++||||+|.||++||++++|++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg-~p~~rViG~g~LDsaR~r~~la~~  159 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGV-YDPNKLFGVTTLDIVRANTFVAEL  159 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcC-CChHHEEeeecchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999995553332 366777 999999999889999999999999


Q ss_pred             cCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHHHHHc
Q 019519          189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK  268 (340)
Q Consensus       189 l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~ai~~  268 (340)
                      +++++++|+++||||||+++++|+||++++...+++++++++.+++++++++|++.++|||+|+||+|.++++++++|++
T Consensus       160 l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~  239 (312)
T TIGR01772       160 KGKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVR  239 (312)
T ss_pred             hCCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHH
Confidence            99999999999999998668999999998643455666899999999999999997667899999999999999999997


Q ss_pred             CCCCCCcEEEeeeeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019519          269 GLNGVPDVVECSFVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN  339 (340)
Q Consensus       269 ~~~~~~~v~~~~~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  339 (340)
                      +..+++.++|+++++|+| ++|+|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|++
T Consensus       240 ~~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~  311 (312)
T TIGR01772       240 GLKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA  311 (312)
T ss_pred             hhCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            533344688888888888 78999999999999999999887579999999999999999999999999975

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=1.1e-67  Score=490.91  Aligned_cols=297  Identities=43%  Similarity=0.608  Sum_probs=270.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCC--ceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +||+|||| |+||+++++.|+..++..|++|+|+++  ++|.++||.|+...  ....... +.| +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence            59999998 999999999998777777999999996  79999999999742  2333332 245 58899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHH
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~  183 (340)
                      |.||||||+|+|++..|++|+++++++|.++|||++++++|||+|+|||++   |+.+| +|++||||+ |.||++||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~---~k~sg-~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA---MKFSG-FPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH---HHhcC-CCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998   89999 999999999 8999999999


Q ss_pred             HHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C-------CChHHHHHHHHHHhcchhhhhhhhcCCCCccchH
Q 019519          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (340)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~  255 (340)
                      ++|+++++++++|+++|+|+||+ ++||+||++++++ +       .++++++++.++|+++|++|++.| |.| ++||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999999 9999999999975 2       223567899999999999999976 444 99999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019519          256 AYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK  333 (340)
Q Consensus       256 A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  333 (340)
                      |.++++++++|++|++   +++|++ +++|+| ++|+|||+||++|++|+++++++ +|+++|+++|++|++.||+.++.
T Consensus       231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~  306 (313)
T COG0039         231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIEL  306 (313)
T ss_pred             HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999973   578886 689999 89999999999999999999998 99999999999999999999999


Q ss_pred             Hhhhhh
Q 019519          334 GVKFAN  339 (340)
Q Consensus       334 ~~~~~~  339 (340)
                      ..++++
T Consensus       307 ~~~~~~  312 (313)
T COG0039         307 VKELVL  312 (313)
T ss_pred             HHHhhc
Confidence            988765

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=2.4e-67  Score=493.91  Aligned_cols=308  Identities=67%  Similarity=1.023  Sum_probs=274.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||+||||+|+||+++++.|+.+++++||+|+|++.++|+++||+|+..+.++....+++|++++++|||+||+|||.||
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999998899999999999999999999999998678999999999754566653233466799999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH-HHHhCCCCCCceEeccchhHHHHHHHHHH
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV-FKKAGTYNEKKLFGVTTLDVVRAKTFYAG  187 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~-~~~sg~~~~~kviG~~~ld~~R~~~~la~  187 (340)
                      ++|++|+|++..|.++++++++.|.+++|++|+|++|||+|+||++++++ ++.+| +|++||||+|.||++|+++++|+
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~-~p~~rviG~~~LDs~R~~~~la~  159 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGV-YDPKRLFGVTTLDVVRANTFVAE  159 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcC-CCHHHEEeeechHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999985544332 67777 99999999988999999999999


Q ss_pred             HcCCCCCCCceeEEEec-CCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHHHH
Q 019519          188 KANVNVAEVNVPVVGGH-AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC  266 (340)
Q Consensus       188 ~l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~ai  266 (340)
                      ++|+++++|++++|||| |+ +++|+||++.+...+++++++++.+++++++++|++.+.|||+|+||+|.++++++++|
T Consensus       160 ~l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aI  238 (310)
T cd01337         160 LLGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSL  238 (310)
T ss_pred             HhCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHH
Confidence            99999999999999999 77 99999999987545666668999999999999999976678999999999999999999


Q ss_pred             HcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019519          267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFA  338 (340)
Q Consensus       267 ~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  338 (340)
                      ++|..+++.++++++++++-.+|+|+|+||++|++|+++++++++|+++|+++|++|++.|++.++++++|+
T Consensus       239 l~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (310)
T cd01337         239 LRGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV  310 (310)
T ss_pred             HHhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            987555455777776665435789999999999999999988734999999999999999999999999884

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-64  Score=474.67  Aligned_cols=310  Identities=58%  Similarity=0.891  Sum_probs=278.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      +|.||+||||+|+||+++++.|+..+..+||+|+|++.++++++||.|......+...++..+++++++|||+||+++|.
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~   86 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV   86 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence            35699999988999999999999888899999999955889999999987644555443223446899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH-HHHHHhCCCCCCceEeccchhHHHHHHHH
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA-EVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~-~~~~~sg~~~~~kviG~~~ld~~R~~~~l  185 (340)
                      |++++++|.+++..|+++++++++.|++++|+++++++|||+|+++++++ .+++.+| +||+||||++.||++||++++
T Consensus        87 ~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg-~p~~~viG~g~LDs~R~r~~l  165 (321)
T PTZ00325         87 PRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGV-YDPRKLFGVTTLDVVRARKFV  165 (321)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccC-CChhheeechhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999974 2246777 999999999779999999999


Q ss_pred             HHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHHH
Q 019519          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA  265 (340)
Q Consensus       186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~a  265 (340)
                      |+++|++|++|+++||||||++++||+||++  +.++++++++++.+++++++++|++.|.+||+|+||+|.++++++++
T Consensus       166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~--g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a  243 (321)
T PTZ00325        166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS  243 (321)
T ss_pred             HHHhCcChhheEEEEEeecCCcccccchhcc--CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            9999999999999999999984699999999  44677777999999999999999998667799999999999999999


Q ss_pred             HHcCCCCCCcEEEeeeeeCCC-CCccEEEEeEEEcCCceEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 019519          266 CLKGLNGVPDVVECSFVQSTV-TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLEKLKPELKASIEKGVKFANA  340 (340)
Q Consensus       266 i~~~~~~~~~v~~~~~~~g~~-~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  340 (340)
                      |+++..+++.++++++++|+| .+|+|+|+||++|++|++++++ + +|+++|+++|++|++.|++.++++++|+++
T Consensus       244 il~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~  319 (321)
T PTZ00325        244 VLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKKNIEKGLEFARK  319 (321)
T ss_pred             HHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998744445678888889988 6899999999999999999998 6 999999999999999999999999999875

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=4.8e-64  Score=474.03  Aligned_cols=300  Identities=77%  Similarity=1.164  Sum_probs=271.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      .||+||||+|+||+++++.|+.+++++||+|+|+++++++++||.|+.....+..+++++|++++++|||+||++||.|+
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~~   98 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPR   98 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCCC
Confidence            49999998899999999999999999999999999888999999999865566654456778899999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC----ccHHHHHHHHHHhCCCCCCceEeccchhHHHHHHH
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN----STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF  184 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d----~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~~  184 (340)
                      ++|++|.+++..|.++++++++.+++++|+++++++|||+|    ++++.+   ++.+| +||+|+||+|.||++||+++
T Consensus        99 ~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~---~~~s~-~p~~~viG~~~LDs~Rl~~~  174 (323)
T PLN00106         99 KPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVL---KKAGV-YDPKKLFGVTTLDVVRANTF  174 (323)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH---HHcCC-CCcceEEEEecchHHHHHHH
Confidence            99999999999999999999999999999999999999999    677654   67787 99999999988999999999


Q ss_pred             HHHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHH
Q 019519          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFAD  264 (340)
Q Consensus       185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~  264 (340)
                      +|+++|+++.+|+++|+||||++++||+||++.+...+++++++++.+++++++++|++.+.|||+++||+|.+++++++
T Consensus       175 lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~  254 (323)
T PLN00106        175 VAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFAD  254 (323)
T ss_pred             HHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHH
Confidence            99999999999999999999766999999999765446666789999999999999999754689999999999999999


Q ss_pred             HHHcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 019519          265 ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE  332 (340)
Q Consensus       265 ai~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  332 (340)
                      +|+.++++++.++||++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus       255 ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~  322 (323)
T PLN00106        255 ACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE  322 (323)
T ss_pred             HHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            99998765667899988777664349999999999999999998768999999999999999998875

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.6e-64  Score=474.18  Aligned_cols=286  Identities=26%  Similarity=0.383  Sum_probs=260.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-C--ceEEEEecCCccccccCCCCEEEEcC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-R--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~--~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ||+|||+ |+||+++|+.|+..++++||+|+|+++  ++|+++||+|... .  ..+..++  +| +++++|||+||+||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence            8999998 999999999999999999999999987  7899999999753 2  2455543  45 58899999999999


Q ss_pred             CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          105 GVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       105 g~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      |.|+++|++  |+|++..|++|++++++.+.+++|++++|++|||+|+||+++   ++.+| ||++|+||+ |.||++||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA---ATEFD-YPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH---HHHhC-cChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999999998   78999 999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---C------ChHHHHHHHHHHhcchhhhhhhhcCCCCc
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L------ADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---~------~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  251 (340)
                      ++++|+++|+++++|+++||||||+ +++|+||++++++ +   +      ++.+++++.+++++++++|++   +||+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence            9999999999999999999999998 9999999999864 1   1      122478999999999999999   57899


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       252 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      +|++|.++++++++|++|.+   .++|++ +++|+| ++|+|+|+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~  304 (307)
T cd05290         229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE  304 (307)
T ss_pred             hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998853   578886 578888 78999999999999999999998 9999999999999999997


Q ss_pred             HH
Q 019519          330 SI  331 (340)
Q Consensus       330 ~~  331 (340)
                      .+
T Consensus       305 ~~  306 (307)
T cd05290         305 TI  306 (307)
T ss_pred             Hh
Confidence            65

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.9e-63  Score=441.32  Aligned_cols=290  Identities=26%  Similarity=0.415  Sum_probs=266.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC---CceEEEEecCCccccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      ..||+|+|+ |+||.++++.++.+++.+|++|+|.++  ++|++|||+|...   .+++...   .|+ .+.+|+|+||+
T Consensus        20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~---~Dy-~~sa~S~lvIi   94 (332)
T KOG1495|consen   20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVAS---KDY-SVSANSKLVII   94 (332)
T ss_pred             CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEec---Ccc-cccCCCcEEEE
Confidence            469999998 999999999999999999999999998  7999999999863   4666653   574 77899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      |||..+++|++|++++++|+.|++.+.+++.+|.||++++++|||+|+|||++   ||.+| ||++||||. |+||++||
T Consensus        95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~---wKLSg-fP~nRViGsGcnLDsaRF  170 (332)
T KOG1495|consen   95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT---WKLSG-FPKNRVIGSGCNLDSARF  170 (332)
T ss_pred             ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH---HHHcC-CcccceeccCcCccHHHH
Confidence            99999999999999999999999999999999999999999999999999997   89999 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC------------CCChHHHHHHHHHHhcchhhhhhhhcCCC
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGKG  249 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg  249 (340)
                      |+.++++||++|+++++|++||||+ +.||.||..++.+            ..+++.|+++.++|.+.+++|+++   ||
T Consensus       171 ryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---KG  246 (332)
T KOG1495|consen  171 RYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---KG  246 (332)
T ss_pred             HHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---cC
Confidence            9999999999999999999999999 8999999998853            256778999999999999999996   59


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHH
Q 019519          250 SATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE  326 (340)
Q Consensus       250 ~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  326 (340)
                      +|.|++|.++++++++|+.|.+   .++|++. ++|.|  .+|+|+|+||++|++|+..++.. +|+++|.++|.+|++.
T Consensus       247 yTswaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~t  322 (332)
T KOG1495|consen  247 YTSWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKT  322 (332)
T ss_pred             chHHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHH
Confidence            9999999999999999999976   4778874 78887  67999999999999999999998 9999999999999999


Q ss_pred             HHHHHHHHh
Q 019519          327 LKASIEKGV  335 (340)
Q Consensus       327 l~~~~~~~~  335 (340)
                      |. ++|+.+
T Consensus       323 l~-~~q~~l  330 (332)
T KOG1495|consen  323 LL-EAQKSL  330 (332)
T ss_pred             HH-HHHHhc
Confidence            95 555544

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=8.2e-63  Score=465.30  Aligned_cols=288  Identities=28%  Similarity=0.421  Sum_probs=261.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-C--ceEEEEecCCccccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-R--SEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~--~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      .+||+|||| |+||+++++.|+..++++||+|+|+++  ++|+++||+|+.. .  ..+..   ++|+ ++++|||+||+
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~---~~dy-~~~~~adivvi   77 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA---DKDY-SVTANSKVVIV   77 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE---CCCH-HHhCCCCEEEE
Confidence            469999997 999999999999999999999999987  6899999999972 2  23432   3565 67999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      ++|.|+++||+|.|++.+|+++++++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++|+
T Consensus        78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~k~sg-~p~~~viG~gt~Ld~~R~  153 (312)
T cd05293          78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA---WKLSG-LPKHRVIGSGCNLDSARF  153 (312)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH---HHHhC-CCHHHEEecCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997   78888 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C-----------CChHHHHHHHHHHhcchhhhhhhhcCCC
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg  249 (340)
                      ++++|+++++++++|++++|||||+ +++|+||++++++ +           .++++++++.+++++++++|++   +||
T Consensus       154 ~~~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg  229 (312)
T cd05293         154 RYLIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKG  229 (312)
T ss_pred             HHHHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcC
Confidence            9999999999999999999999998 8999999999864 1           1234578999999999999998   578


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHH
Q 019519          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE  326 (340)
Q Consensus       250 ~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  326 (340)
                      +|+|++|.++++++++|+.+.+   .++|++ +++|.|  |+|++||+||++|++|+++++++ +|+++|+++|++|++.
T Consensus       230 ~t~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~  305 (312)
T cd05293         230 YTSWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADT  305 (312)
T ss_pred             CchHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHH
Confidence            9999999999999999998864   477776 578877  68999999999999999999998 9999999999999999


Q ss_pred             HHHHHH
Q 019519          327 LKASIE  332 (340)
Q Consensus       327 l~~~~~  332 (340)
                      |++.++
T Consensus       306 i~~~~~  311 (312)
T cd05293         306 LWEVQK  311 (312)
T ss_pred             HHHHhh
Confidence            998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=5.7e-63  Score=467.48  Aligned_cols=296  Identities=31%  Similarity=0.407  Sum_probs=263.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCCC----cHHHHHHHhcCCC--CceEEEEecCCcccccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al   94 (340)
                      ++|.||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||+|+..  ...+...  .+| ++++
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~   77 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF   77 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence            367899999987999999999999999999     999999964    6999999999973  1223332  234 6889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHh-CCCCCCceEe
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFG  172 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~s-g~~~~~kviG  172 (340)
                      +|||+||+|||.|+++||+|.|++..|++++++++++|.+++| ++++|++|||+|+||+++   ++.+ | ||++||||
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g-~p~~rViG  153 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA---SKNAPD-IPPKNFSA  153 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcCC-CCHHHEEE
Confidence            9999999999999999999999999999999999999999998 999999999999999998   7889 8 99999999


Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCc-eeEEEecCCCccccccccCCCCC-C----CChHH--HHHHHHHHhcchhhhhhh
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~  244 (340)
                      +|.||++||++++|+++|+++++|+ .+||||||+ +++|+||++++++ +    ++++.  +++|.+++++++++|++ 
T Consensus       154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-  231 (323)
T TIGR01759       154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE-  231 (323)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh-
Confidence            9999999999999999999999995 569999998 9999999999864 2    23332  68999999999999999 


Q ss_pred             hcCCCCccc-hHHHHHHHHHHHHHcCCCCCCcEEEee-eeeC-CC--CCccEEEEeEEEcCCceEEEec-CCCCCHHHHH
Q 019519          245 KAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQE  318 (340)
Q Consensus       245 ~~~kg~~~~-s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~  318 (340)
                        +||+++| ++|.++++++++|++|++. +.++|++ +++| +|  |+|+|||+||++|++|++++++ + +|+++|++
T Consensus       232 --~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~  307 (323)
T TIGR01759       232 --ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRG  307 (323)
T ss_pred             --ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHH
Confidence              4688999 5779999999999999732 2488997 6899 88  5899999999999999999999 7 99999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 019519          319 GLEKLKPELKASIEKG  334 (340)
Q Consensus       319 ~l~~s~~~l~~~~~~~  334 (340)
                      +|++|++.|++++++|
T Consensus       308 ~l~~sa~~lk~~~~~~  323 (323)
T TIGR01759       308 KLDATEDELLEEKEEA  323 (323)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999764

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=7.8e-62  Score=459.16  Aligned_cols=309  Identities=56%  Similarity=0.841  Sum_probs=273.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh-CCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~-~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |||+||||+|.||+++++.+.. .+...+++|+|+++ ..++++|+.|......+..+ ..+|++++++|+|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            6999999989999999998865 56678999999877 56788999986422344432 235667899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHH-HHhCCCCCCceEeccchhHHHHHHHH
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF-KKAGTYNEKKLFGVTTLDVVRAKTFY  185 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~-~~sg~~~~~kviG~~~ld~~R~~~~l  185 (340)
                      +++++++|.+++..|+++++++++.|++++|+++++++|||+|+||+++++.. +.+| +|++||||+|.||++|+++++
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg-~p~~rvig~~~Lds~R~~~~i  158 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGV-YDKNKLFGVTTLDVIRSETFV  158 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcC-CCHHHEEeeecHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999975433 6777 999999999889999999999


Q ss_pred             HHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHHH
Q 019519          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA  265 (340)
Q Consensus       186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~a  265 (340)
                      |+++|+++++|++++|||||++++||+||++ -+.++++++++++.+++++++++|++.|.|+|+|+||+|.++++++++
T Consensus       159 a~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~a  237 (312)
T PRK05086        159 AELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS  237 (312)
T ss_pred             HHHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999776899999999 334677777999999999999999997656799999999999999999


Q ss_pred             HHcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 019519          266 CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA  340 (340)
Q Consensus       266 i~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  340 (340)
                      |+.++++++.++|+++++|+-.+++|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|+++
T Consensus       238 i~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~  312 (312)
T PRK05086        238 LVRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_pred             HHhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            998865556688887766643468999999999999999999977999999999999999999999999999875

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=4.7e-62  Score=465.16  Aligned_cols=291  Identities=26%  Similarity=0.406  Sum_probs=262.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +||+|||+ |+||+++++.|+..++++||+|+|+++  ++|+++||+|+.. ....... .++|+ ++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence            69999997 999999999999999999999999987  6899999999863 2223332 22464 67999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHHH
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~~  184 (340)
                      .|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHHhC-CCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997   78899 999999999 69999999999


Q ss_pred             HHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C-----------CChHHHHHHHHHHhcchhhhhhhhcCCCCcc
Q 019519          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (340)
Q Consensus       185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  252 (340)
                      +|+++|+++++|+++||||||+ +++|+||.+++++ +           +++++++++.+++++++++|++   +||+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence            9999999999999999999998 9999999998853 1           3345588999999999999999   578999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC-C--CccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          253 LSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV-T--ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       253 ~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~-~--~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      |++|.++++++++|++|.+   .++|++. ++|+| .  +++|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~  342 (350)
T PLN02602        267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW  342 (350)
T ss_pred             HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999874   5888875 68888 3  7999999999999999999998 999999999999999999


Q ss_pred             HHHHHH
Q 019519          329 ASIEKG  334 (340)
Q Consensus       329 ~~~~~~  334 (340)
                      +.++..
T Consensus       343 ~~~~~~  348 (350)
T PLN02602        343 EVQSQL  348 (350)
T ss_pred             HHHHHh
Confidence            887654

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-61  Score=458.17  Aligned_cols=298  Identities=27%  Similarity=0.362  Sum_probs=263.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCCC----cHHHHHHHhcCCC--CceEEEEecCCccccccC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~   95 (340)
                      .|+||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||+|+..  ...+..+  +++ +++++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence            46899999987999999999999999888     999999954    6899999999862  2234443  234 68899


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~  174 (340)
                      |||+||++||.|+++|++|.|++..|++++++++++|.+++ |++++|++|||+|+||+++   ++.+|+||++||||+|
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~t  156 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA---MKNAPDLPAENFTAMT  156 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHHHEEeee
Confidence            99999999999999999999999999999999999999988 7999999999999999998   7899349999999999


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCceeE-EEecCCCccccccccCCCCC-C----CChHH--HHHHHHHHhcchhhhhhhhc
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVNVPV-VGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAKA  246 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~~~v-~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~~  246 (340)
                      .||++||++++|+++++++++|++++ |||||+ +++|+||++++++ +    +++++  ++++.+++++++++|++   
T Consensus       157 ~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---  232 (326)
T PRK05442        157 RLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE---  232 (326)
T ss_pred             HHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh---
Confidence            99999999999999999999999965 899998 9999999999975 1    33332  67899999999999999   


Q ss_pred             CCCCccchHHHH-HHHHHHHHHcCCCCCCcEEEeee-eeCCC--CCccEEEEeEEEcCCceEEEec-CCCCCHHHHHHHH
Q 019519          247 GKGSATLSMAYA-GAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLE  321 (340)
Q Consensus       247 ~kg~~~~s~A~a-~~~li~ai~~~~~~~~~v~~~~~-~~g~~--~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~~l~  321 (340)
                      +||+++|++|.+ +++++++|+++.+. +.++|+++ ++|+|  |+++|||+||++| +|+++++. + +|+++|+++|+
T Consensus       233 ~kG~t~~~~a~~~~~~iv~ail~~~~~-~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~  309 (326)
T PRK05442        233 ARGASSAASAANAAIDHVRDWVLGTPE-GDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKID  309 (326)
T ss_pred             CcCCccHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHH
Confidence            578999999999 59999999998521 35888875 68888  5899999999999 99999866 6 99999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 019519          322 KLKPELKASIEKGVKF  337 (340)
Q Consensus       322 ~s~~~l~~~~~~~~~~  337 (340)
                      +|++.|+++.+.++..
T Consensus       310 ~s~~~l~~~~~~~~~~  325 (326)
T PRK05442        310 ATLAELEEERDAVKHL  325 (326)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=4.4e-61  Score=454.64  Aligned_cols=292  Identities=27%  Similarity=0.438  Sum_probs=264.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      +.+||+|||| |.||+++++.|+..++++||+|+|+++  ++++++||.|+.. ..++...+  +| +++++|||+||++
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivIit   80 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVVIT   80 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEEEe
Confidence            4579999998 999999999999999999999999987  6899999999863 23444442  45 5789999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~  182 (340)
                      +|.|+++|++|.|++..|+++++++++.+++++|++|+|++|||+|++|+++   ++++| +|++||||+ |.||+.|++
T Consensus        81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~---~k~sg-~p~~~viG~gt~LDs~R~~  156 (315)
T PRK00066         81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT---WKLSG-FPKERVIGSGTSLDSARFR  156 (315)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH---HHHhC-CCHHHEeecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987   78888 999999999 799999999


Q ss_pred             HHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----------CChHHHHHHHHHHhcchhhhhhhhcCCCCc
Q 019519          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (340)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  251 (340)
                      +++|+++|+++++|+++|||+||+ +++|+||++++++ +          +++++++++.+++++++++|++   +||++
T Consensus       157 ~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t  232 (315)
T PRK00066        157 YMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGAT  232 (315)
T ss_pred             HHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCee
Confidence            999999999999999999999998 8999999999864 1          3445688899999999999999   56899


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       252 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      +|++|.++++++++|+++.+   .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++
T Consensus       233 ~~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~  308 (315)
T PRK00066        233 YYGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKE  308 (315)
T ss_pred             hHHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999753   578887 478888 78999999999999999999998 9999999999999999999


Q ss_pred             HHHHH
Q 019519          330 SIEKG  334 (340)
Q Consensus       330 ~~~~~  334 (340)
                      .++..
T Consensus       309 ~~~~~  313 (315)
T PRK00066        309 IMDEA  313 (315)
T ss_pred             HHHHh
Confidence            88754

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.5e-61  Score=454.50  Aligned_cols=281  Identities=29%  Similarity=0.467  Sum_probs=254.9

Q ss_pred             EEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        33 IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||+ |+||+++++.|+..++++||+|+|+++  ++++++||+|+..  ...+....  +| +++++|||+||+++|.||
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCC
Confidence            6897 999999999999999999999999987  7999999999863  22344432  45 588999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHHHHHH
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAG  187 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~~la~  187 (340)
                      ++||+|.|++..|+++++++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA---WKLSG-FPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHHhC-CCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997   78888 999999999 79999999999999


Q ss_pred             HcCCCCCCCceeEEEecCCCccccccccCCCCC-C---C-------ChHHHHHHHHHHhcchhhhhhhhcCCCCccchHH
Q 019519          188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L-------ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (340)
Q Consensus       188 ~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---~-------~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A  256 (340)
                      ++++++++|+++|||+||+ +++|+||++++++ +   +       ++.+++++.+++++++++|++   +||+|+|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence            9999999999999999998 9999999999864 2   2       123477999999999999999   5789999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       257 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      .++++++++|+.|.+   .++||+ +++|+| .+|+|||+||+||++|+++++++ +|+++|+++|++|++.||+
T Consensus       229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence            999999999999863   588996 678888 67899999999999999999998 9999999999999999973

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=1.1e-60  Score=464.79  Aligned_cols=301  Identities=26%  Similarity=0.301  Sum_probs=265.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhC-------CCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCcccccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLN-------PLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~-------~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al   94 (340)
                      +++.||+||||+|+||+++++.|+.+       +++.||+|+|+++  ++|+++||+|+.+  ..++...+  +| ++++
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~--~~-ye~~  174 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI--DP-YEVF  174 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec--CC-HHHh
Confidence            45789999998899999999999988       6777999999988  7999999999873  22454332  34 6889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      +|||+||+++|.|+++||+|.|++..|.+|++++++.|.+ ++|++++|++|||+|+||+++   ++.+| ++++|+||+
T Consensus       175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~---~k~sg-~~~~rViGt  250 (444)
T PLN00112        175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC---LKNAP-NIPAKNFHA  250 (444)
T ss_pred             CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH---HHHcC-CCCcceEEe
Confidence            9999999999999999999999999999999999999999 589999999999999999998   78999 889999999


Q ss_pred             -cchhHHHHHHHHHHHcCCCCCCC-ceeEEEecCCCccccccccCCCCC-C----CChHH--HHHHHHHHhcchhhhhhh
Q 019519          174 -TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       174 -~~ld~~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~  244 (340)
                       |.||++||+++||+++|+++++| +++||||||+ ++||+||++++++ +    +++.+  +++|.+++++++++|++ 
T Consensus       251 gT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~-  328 (444)
T PLN00112        251 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK-  328 (444)
T ss_pred             eccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh-
Confidence             89999999999999999999999 5699999999 9999999999965 2    22222  67999999999999998 


Q ss_pred             hcCCCCccc-hHHHHHHHHHHHHHcCCCCCCcEEEee-eeeC-CC--CCccEEEEeEEEcCCceEEEe-cCCCCCHHHHH
Q 019519          245 KAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKVRLGKNGVEEVL-GLGPLSDFEQE  318 (340)
Q Consensus       245 ~~~kg~~~~-s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~svP~~ig~~Gv~~i~-~~~~L~~~E~~  318 (340)
                        +||+++| ++|.++++++++|+.+.+ ++.++|++ +++| +|  ++|+|||+||++|++|+++++ ++ +|+++|++
T Consensus       329 --~kG~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~~  404 (444)
T PLN00112        329 --KWGRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLRE  404 (444)
T ss_pred             --ccCchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHHH
Confidence              4676766 999999999999995443 24689997 5788 48  589999999999999999999 67 99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q 019519          319 GLEKLKPELKASIEKGVKFAN  339 (340)
Q Consensus       319 ~l~~s~~~l~~~~~~~~~~~~  339 (340)
                      +|++|+++|+++.+.+...++
T Consensus       405 ~l~~Sa~~L~~e~~~~~~~~~  425 (444)
T PLN00112        405 RIKKSEAELLAEKRCVAHLTG  425 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988876553

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=2.3e-60  Score=456.41  Aligned_cols=300  Identities=27%  Similarity=0.285  Sum_probs=262.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEE--eCCC--cHHHHHHHhcCCC--CceEEEEecCCcccccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALY--DIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~--D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al   94 (340)
                      +++.||+||||+|+||+++++.|+.+++++     +|+|+  |+++  ++|+++||.|+.+  ...+...  ++| ++++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~~~  118 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YEVF  118 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence            346899999988999999999999999988     57777  5555  6999999999872  2244433  234 6889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      +|||+||++||.||++|++|.|++..|+++++++++.|.+++ |++++|++|||+|+||+++   ++.+| ++|+|+||+
T Consensus       119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~---~k~sg-~~~~rviG~  194 (387)
T TIGR01757       119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA---MKNAP-NIPRKNFHA  194 (387)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH---HHHcC-CCcccEEEe
Confidence            999999999999999999999999999999999999999988 9999999999999999998   78898 899999999


Q ss_pred             -cchhHHHHHHHHHHHcCCCCCCCc-eeEEEecCCCccccccccCCCCC-CC----ChH--HHHHHHHHHhcchhhhhhh
Q 019519          174 -TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-NL----ADE--DIKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       174 -~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-~~----~~~--~~~~l~~~v~~~~~~i~~~  244 (340)
                       |.||++||+++||+++++++++|+ ++||||||+ +++|+||++++++ ++    ++.  .+++|.+.+++++++|++ 
T Consensus       195 gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~-  272 (387)
T TIGR01757       195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK-  272 (387)
T ss_pred             cchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh-
Confidence             899999999999999999999995 999999998 9999999999864 22    222  268999999999999998 


Q ss_pred             hcCCCCccc-hHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCC-C--CCccEEEEeEEEcCCceEEEe-cCCCCCHHHHH
Q 019519          245 KAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECSF-VQST-V--TELPFFASKVRLGKNGVEEVL-GLGPLSDFEQE  318 (340)
Q Consensus       245 ~~~kg~~~~-s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~-~--~~~~~~svP~~ig~~Gv~~i~-~~~~L~~~E~~  318 (340)
                        +||.+.| ++|.++++++++|+++.+. +.++|++. ++|+ |  ++|+|||+||++|++|+++++ ++ +|+++|++
T Consensus       273 --~KG~t~~~s~a~ai~~~i~ai~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~  348 (387)
T TIGR01757       273 --KWGRSSAASTAVSIADAIKSLVVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRE  348 (387)
T ss_pred             --ccCchhHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHH
Confidence              4676666 9999999999999954432 35888875 6885 8  589999999999999999996 77 99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 019519          319 GLEKLKPELKASIEKGVKFA  338 (340)
Q Consensus       319 ~l~~s~~~l~~~~~~~~~~~  338 (340)
                      +|++|+++|+++.+.+++.+
T Consensus       349 ~l~~Sa~~L~~e~~~~~~~~  368 (387)
T TIGR01757       349 RIRKSEDELLKEKECVAHLI  368 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999887754

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.7e-60  Score=424.25  Aligned_cols=324  Identities=71%  Similarity=1.063  Sum_probs=305.3

Q ss_pred             ccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC
Q 019519           16 AGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        16 ~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~   95 (340)
                      ..++.|++...+..||+|+||+|-+|+.+..+|.+.++++++.|||+....|.+.||+|......+.++++...++++++
T Consensus        16 ~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~   95 (345)
T KOG1494|consen   16 GPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALK   95 (345)
T ss_pred             CCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhc
Confidence            44566777776889999999999999999999999999999999999989999999999998889999987788999999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccc
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~  175 (340)
                      +||+||+.||+||||||+|.|++..|+.|+++++..+.++||+|.+.++|||+|...++++++++..|.|+|+|+||+|.
T Consensus        96 ~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTt  175 (345)
T KOG1494|consen   96 GADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTT  175 (345)
T ss_pred             CCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCCC-CCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccch
Q 019519          176 LDVVRAKTFYAGKANVNV-AEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS  254 (340)
Q Consensus       176 ld~~R~~~~la~~l~v~~-~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s  254 (340)
                      ||..|.+.++++.++++| .+++++|+|+|.+.+++|++|+..+...+++++++.++.+++..|.|+.+.|.|+|++.+|
T Consensus       176 LDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLS  255 (345)
T KOG1494|consen  176 LDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLS  255 (345)
T ss_pred             hhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhh
Confidence            999999999999999999 5599999999988899999999988667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019519          255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG  334 (340)
Q Consensus       255 ~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  334 (340)
                      +|+|.++++.+++.+..++..++-|+|+....-+-.||+.|+++|++|++++..+++|+++|++.|+.+..+|++.|+++
T Consensus       256 MAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KG  335 (345)
T KOG1494|consen  256 MAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKG  335 (345)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999988766678889887664356799999999999999999999999999999999999999999999


Q ss_pred             hhhhh
Q 019519          335 VKFAN  339 (340)
Q Consensus       335 ~~~~~  339 (340)
                      ++|++
T Consensus       336 v~F~~  340 (345)
T KOG1494|consen  336 VTFVK  340 (345)
T ss_pred             HHHHh
Confidence            99986

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=2.3e-60  Score=450.35  Aligned_cols=295  Identities=30%  Similarity=0.365  Sum_probs=261.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCCC----cHHHHHHHhcCCC--CceEEEEecCCccccccCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~a   97 (340)
                      .||+||||+|+||+++++.|+.+++++     +|+|+|+++    ++++++||.|+..  .......   ++.+++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~---~~~~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT---TDPEEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe---cChHHHhCCC
Confidence            389999988999999999999988888     499999985    6899999999852  2223332   2336999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccch
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~l  176 (340)
                      |+||++||.|+++|++|.+++..|+++++++++.|+++| |++++|++|||+|+||+++   ++.+|.+|++||||+|.|
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~vig~t~L  154 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA---LKNAPNLPPKNFTALTRL  154 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEeeHH
Confidence            999999999999999999999999999999999999996 9999999999999999997   789984499999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCC-ceeEEEecCCCccccccccCCCCCC---------CChH-HHHHHHHHHhcchhhhhhhh
Q 019519          177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKAN---------LADE-DIKALTKRTQDGGTEVVEAK  245 (340)
Q Consensus       177 d~~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~~---------~~~~-~~~~l~~~v~~~~~~i~~~~  245 (340)
                      |++||++++|++++++|++| .++||||||+ +++|+||++++++.         ++++ ..++|.+++++++++|++  
T Consensus       155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~--  231 (323)
T cd00704         155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK--  231 (323)
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh--
Confidence            99999999999999999999 5689999999 89999999998642         3333 267899999999999999  


Q ss_pred             cCCCCccch-HHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHH
Q 019519          246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (340)
Q Consensus       246 ~~kg~~~~s-~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l  320 (340)
                       +||+++|+ +|.++++++++|++|.+++ .++||+ +++|+|   |+|+|||+||+||++||++++++ +|+++|+++|
T Consensus       232 -~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l  308 (323)
T cd00704         232 -KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREKL  308 (323)
T ss_pred             -ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHHH
Confidence             46889896 6999999999999998633 589997 678887   58999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 019519          321 EKLKPELKASIEKGV  335 (340)
Q Consensus       321 ~~s~~~l~~~~~~~~  335 (340)
                      ++|++.|+++-+.++
T Consensus       309 ~~s~~~l~~~~~~~~  323 (323)
T cd00704         309 KATEEELIEEKEIAL  323 (323)
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999988764

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=7e-60  Score=446.87  Aligned_cols=297  Identities=27%  Similarity=0.349  Sum_probs=264.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCCC----cHHHHHHHhcCCC--CceEEEEecCCccccccC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~   95 (340)
                      +++||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||+|+..  ...+...  ++| +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            46799999988999999999999999999     999999954    6899999999873  2234443  234 68899


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~  174 (340)
                      |||+||+|||.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|+||+++   ++.+|++|++||||+|
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~ViG~t  154 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA---MKNAPDIPPDNFTAMT  154 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH---HHHcCCCChHheEEeh
Confidence            99999999999999999999999999999999999999999 5999999999999999998   7888559999999999


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCce-eEEEecCCCccccccccCCCCC-C----CChH--HHHHHHHHHhcchhhhhhhhc
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADE--DIKALTKRTQDGGTEVVEAKA  246 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~----~~~~--~~~~l~~~v~~~~~~i~~~~~  246 (340)
                      .||++||++.+|+++|+++++|++ +|||+||+ +++|+||.+++++ +    +.+.  .++++.+++++++++|++   
T Consensus       155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---  230 (322)
T cd01338         155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK---  230 (322)
T ss_pred             HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---
Confidence            999999999999999999999998 56999998 9999999998864 2    3343  267999999999999999   


Q ss_pred             CCCCccchHH-HHHHHHHHHHHcCCCCCCcEEEeee-eeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHH
Q 019519          247 GKGSATLSMA-YAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (340)
Q Consensus       247 ~kg~~~~s~A-~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~  322 (340)
                      +||+++|++| .++++++++|++|.+. ..++|+++ ++|+|  |+++|||+||++|++||++++++ +|+++|+++|++
T Consensus       231 ~kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~  308 (322)
T cd01338         231 ARGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDA  308 (322)
T ss_pred             CcCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHH
Confidence            5689999999 5999999999998751 25888874 68988  58999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 019519          323 LKPELKASIEKGV  335 (340)
Q Consensus       323 s~~~l~~~~~~~~  335 (340)
                      |++.|+++-++.+
T Consensus       309 s~~~l~~~~~~~~  321 (322)
T cd01338         309 TLAELLEEREAVK  321 (322)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=3e-59  Score=441.65  Aligned_cols=288  Identities=31%  Similarity=0.442  Sum_probs=259.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +||+|||+ |.||+++++.|+..++..+|+|+|+++  +++.++||.|...  ........  .+ ++++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~-~~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GD-YSDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CC-HHHhCCCCEEEEcc
Confidence            38999998 999999999999999888999999987  6888999998753  22233332  34 46799999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHH
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~  183 (340)
                      |.|+++|++|.+++.+|+++++++++.|+++||++++|++|||+|++|+++   ++++| +|++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~---~~~~g-~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV---QKLSG-LPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH---HHHhC-cCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997   77888 999999999 7999999999


Q ss_pred             HHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---------CChHHHHHHHHHHhcchhhhhhhhcCCCCccc
Q 019519          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSATL  253 (340)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~  253 (340)
                      ++|+++++++++|+++|||+||+ +++|+||++++++ +         +.+++++++.+++++++++|++   +||+++|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence            99999999999999999999998 8999999999864 2         2245588999999999999999   5789999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 019519          254 SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI  331 (340)
Q Consensus       254 s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  331 (340)
                      ++|.++++++++|+++.+   .++|++ +++|+| ++|+|||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus       229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~  304 (306)
T cd05291         229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENI  304 (306)
T ss_pred             HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999753   578887 578888 78999999999999999999998 999999999999999999876


Q ss_pred             H
Q 019519          332 E  332 (340)
Q Consensus       332 ~  332 (340)
                      +
T Consensus       305 ~  305 (306)
T cd05291         305 K  305 (306)
T ss_pred             h
Confidence            4

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2.3e-59  Score=440.90  Aligned_cols=286  Identities=30%  Similarity=0.440  Sum_probs=258.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCC-ceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      |+|||+ |.||+++++.|+..+++.||+|+|+++  +.++++||.|.... .....+. ++| +++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence            689998 999999999999999999999999987  68999999998742 2223222 245 47899999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHHHHH
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA  186 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~~la  186 (340)
                      +++|++|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++++| +|++||||+ |.||+.|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~---~~~sg-~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA---QKLSG-LPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH---HHHhC-cCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987   78899 999999999 6999999999999


Q ss_pred             HHcCCCCCCCceeEEEecCCCccccccccCCCCC-CC------ChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHH
Q 019519          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL------ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG  259 (340)
Q Consensus       187 ~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~~------~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~  259 (340)
                      +++++++++|+++++|+||+ +++|+||++++++ ++      +++.++++.+++++++++|++   +||+++|++|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence            99999999999999999998 8999999999864 21      234578999999999999998   5789999999999


Q ss_pred             HHHHHHHHcCCCCCCcEEEeee-eeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 019519          260 AIFADACLKGLNGVPDVVECSF-VQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI  331 (340)
Q Consensus       260 ~~li~ai~~~~~~~~~v~~~~~-~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  331 (340)
                      ++++++|+++.+   .++|+++ ++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus       230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999853   5888874 68888 78999999999999999999987 999999999999999999765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=7.8e-59  Score=440.44  Aligned_cols=297  Identities=33%  Similarity=0.537  Sum_probs=264.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCC--ceEEEEecCCccccccCCCCEEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +++.++|+.|....  ...... .++|+ ++++|||+||+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEEE
Confidence            4579999998 9999999999998886 6899999987  57889999988531  122222 23576 58999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld~~R~  181 (340)
                      ++|.|+++|++|.|++..|.++++++++.|+++||++|+|++|||+|++|+++   ++.++ +|++||+|+| .||++|+
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~---~~~s~-~p~~rviG~gt~lds~R~  155 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF---QEKSG-IPSNKICGMAGVLDSSRF  155 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHhhC-CCcccEEEecchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987   67787 9999999995 8999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---------CChHHHHHHHHHHhcchhhhhhhhcCCCCc
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  251 (340)
                      ++.+|+++++++++|+++++||||+ +++|+||++++++ +         +++++++++.+++++++++|++.+ |||++
T Consensus       156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t  233 (319)
T PTZ00117        156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA  233 (319)
T ss_pred             HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence            9999999999999999999999998 8999999998864 1         445568899999999999999975 78999


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       252 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      +||+|.++++++++|++|.+   .++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       234 ~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~  309 (319)
T PTZ00117        234 FFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQE  309 (319)
T ss_pred             HHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999863   588997 578888 46899999999999999999998 9999999999999999999


Q ss_pred             HHHHHhhh
Q 019519          330 SIEKGVKF  337 (340)
Q Consensus       330 ~~~~~~~~  337 (340)
                      .++.....
T Consensus       310 ~~~~~~~~  317 (319)
T PTZ00117        310 LTQKAKAL  317 (319)
T ss_pred             HHHHHHHh
Confidence            99876543

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-58  Score=438.29  Aligned_cols=290  Identities=34%  Similarity=0.590  Sum_probs=261.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC----CceEEEEecCCccccccCCCCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +++||+|||| |+||+++++.++..++ .+|+|+|+++  +.+.++|+.|...    ..++..   ++|+ ++++|||+|
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~---~~d~-~~l~~aDiV   78 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG---TNNY-EDIAGSDVV   78 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE---CCCH-HHhCCCCEE
Confidence            3469999997 9999999999998887 4699999988  5788999998742    234443   3575 789999999


Q ss_pred             EEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-
Q 019519          101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-  174 (340)
Q Consensus       101 i~~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-  174 (340)
                      |+++|.|+++|+     +|.+++..|+++++++++.|+++||++|+|++|||+|++++.+   ++.+| +|++||||+| 
T Consensus        79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~---~~~sg-~p~~rviGlgt  154 (321)
T PTZ00082         79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL---QEHSG-LPKNKVCGMAG  154 (321)
T ss_pred             EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHhcC-CChhhEEEecC
Confidence            999999999999     9999999999999999999999999999999999999999987   67888 9999999995 


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---------CChHHHHHHHHHHhcchhhhhhh
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~  244 (340)
                      .||+.|+++.+|+++++++++|+++++||||+ ++||+||++++++ +         +++++++++.+++++++++|++.
T Consensus       155 ~lds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~  233 (321)
T PTZ00082        155 VLDSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL  233 (321)
T ss_pred             cccHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999998 9999999999864 1         34556889999999999999997


Q ss_pred             hcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHH
Q 019519          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (340)
Q Consensus       245 ~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~  322 (340)
                      + |||+|+||+|.++++++++|++|.+   .++|++ +++|+| .+|+|+|+||+||++|+++++++ +|+++|+++|++
T Consensus       234 ~-gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~  308 (321)
T PTZ00082        234 L-GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDE  308 (321)
T ss_pred             c-CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHH
Confidence            5 7899999999999999999999864   588997 578888 67999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHH
Q 019519          323 LKPELKASIE  332 (340)
Q Consensus       323 s~~~l~~~~~  332 (340)
                      |++.|++.++
T Consensus       309 sa~~i~~~~~  318 (321)
T PTZ00082        309 SIKEVKRLEA  318 (321)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.6e-58  Score=435.48  Aligned_cols=288  Identities=32%  Similarity=0.551  Sum_probs=259.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC----CceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|||+ |.||+.+|+.++..++. +++|+|+++  ..+.++|+.|...    ..+++.   ++|+ +++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence            69999998 99999999999998876 899999987  4677888877642    234543   3566 45899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld~~R~  181 (340)
                      ++|.|+++|++|.+++..|.+++++++++|.+++|++++|++|||+|+||+++   ++.+| +|++||||+| .||++|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~---~~~sg-~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA---WQKSG-FPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999997   78998 9999999995 8999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----CChHHHHHHHHHHhcchhhhhhhhcCCCCccchHH
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A  256 (340)
                      ++++|+++++++++|++++|||||+ +++|+||++++++ +    +++++++++.+++++++++|++.+ |||+++|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            9999999999999999999999998 8999999999865 2    344458899999999999999975 6899999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 019519          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE  332 (340)
Q Consensus       257 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  332 (340)
                      .++++++++|+.|.+   .++|++ +++|+| .+++|+|+||++|++|+++++++ +|+++|+++|++|++.|++.++
T Consensus       230 ~~~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~  303 (305)
T TIGR01763       230 ASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCK  303 (305)
T ss_pred             HHHHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999864   488887 578888 68999999999999999999998 9999999999999999998775

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.1e-57  Score=432.24  Aligned_cols=294  Identities=27%  Similarity=0.317  Sum_probs=255.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCCC----cHHHHHHHhcCCCC--ceEEEEecCCccccccCCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSD   98 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~~aD   98 (340)
                      ||+||||+|+||+++++.|+..++++     ||+|+|+++    ++++++||.|+...  ..+.   .+++.+++++|||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~---~~~~~~~~~~~aD   77 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVV---PTHDPAVAFTDVD   77 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCcee---ccCChHHHhCCCC
Confidence            69999988999999999999988875     799999954    57899999999732  2222   1234468999999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cch
Q 019519           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTL  176 (340)
Q Consensus        99 iVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~l  176 (340)
                      +||++||.|+++|++|.+++..|++++++++++|.+++ |++++|++|||+|+||+++   ++.+| ++|.++||+ |.|
T Consensus        78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~~~sg-~~~~~vig~gt~L  153 (324)
T TIGR01758        78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL---SNYAP-SIPPKNFSALTRL  153 (324)
T ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCcceEEEeeeh
Confidence            99999999999999999999999999999999999996 9999999999999999997   78898 666679999 899


Q ss_pred             hHHHHHHHHHHHcCCCCCCCc-eeEEEecCCCccccccccCCCC-C----CC----ChHH--HHHHHHHHhcchhhhhhh
Q 019519          177 DVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPK-A----NL----ADED--IKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       177 d~~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~-~----~~----~~~~--~~~l~~~v~~~~~~i~~~  244 (340)
                      |++||++++|+++++++++|+ ++||||||+ +++|+||+++++ +    ++    +++.  ++++.+++++++++|++.
T Consensus       154 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~  232 (324)
T TIGR01758       154 DHNRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRA  232 (324)
T ss_pred             HHHHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhc
Confidence            999999999999999999996 699999999 999999999997 5    22    2222  578999999999999996


Q ss_pred             hcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCC-C--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHH
Q 019519          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (340)
Q Consensus       245 ~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~-~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l  320 (340)
                      +  +|++.|++|.++++++++|+++.. .+.++|++ +++|+ |  |+|+|||+||++|++|++.+.++ +|+++|+++|
T Consensus       233 k--~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l  308 (324)
T TIGR01758       233 R--KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKL  308 (324)
T ss_pred             c--CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHH
Confidence            3  358999999999999999995432 23589997 47888 8  58999999999997777776667 9999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 019519          321 EKLKPELKASIEKGV  335 (340)
Q Consensus       321 ~~s~~~l~~~~~~~~  335 (340)
                      ++|++.|+++++.++
T Consensus       309 ~~s~~~lk~~~~~~~  323 (324)
T TIGR01758       309 ALTAKELEEERDEAL  323 (324)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998764

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.2e-57  Score=428.82  Aligned_cols=288  Identities=30%  Similarity=0.451  Sum_probs=260.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |||+|||+ |.||+++++.|+..++..|++|+|+++  ..+.++|+.|... ......++  +|+ +++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~--~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA--GDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee--CCH-HHhCCCCEEEEccC
Confidence            69999998 999999999999999888999999987  5789999998852 12233332  454 78999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHHH
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~~  184 (340)
                      .|++++++|.+++..|+++++++++.+++++|+++++++|||+|++|+++   ++.+| +|++||||+ |.||++|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA---YKLSG-LPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997   78898 999999999 89999999999


Q ss_pred             HHHHcCCCCCCCceeEEEecCCCccccccccCCCCC------------CCChHHHHHHHHHHhcchhhhhhhhcCCCCcc
Q 019519          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (340)
Q Consensus       185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  252 (340)
                      +|+++++++++|+++|+|+||+ +++|+||++++++            .+++++++++.+++++++++|++   +||+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence            9999999999999999999998 8999999998864            13335588999999999999999   468999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 019519          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKAS  330 (340)
Q Consensus       253 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  330 (340)
                      |++|.++++++++|+.|.+   .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.
T Consensus       229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~  304 (308)
T cd05292         229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEA  304 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   588887 578888 57899999999999999999998 99999999999999999988


Q ss_pred             HH
Q 019519          331 IE  332 (340)
Q Consensus       331 ~~  332 (340)
                      ++
T Consensus       305 ~~  306 (308)
T cd05292         305 IE  306 (308)
T ss_pred             Hh
Confidence            75

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=9.4e-58  Score=433.39  Aligned_cols=297  Identities=28%  Similarity=0.338  Sum_probs=260.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCCC----cHHHHHHHhcCCC--CceEEEEecCCccccccC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~   95 (340)
                      +|.||+||||+|+||+++++.|+..++++     ||+|+|+++    ++++++|+.|+..  ...+..   +++++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            36799999988999999999999888764     999999954    5788899999752  223332   256679999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-  173 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-  173 (340)
                      |||+||++||.|++++++|.+++..|+++++++++.|++++ |++++|++|||+|+||+++   ++.++.+|+++ ||+ 
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~~~~~~~~~-ig~g  153 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL---LKYAPSIPKEN-FTAL  153 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH---HHHcCCCCHHH-EEee
Confidence            99999999999999999999999999999999999999997 7999999999999999997   77865488877 888 


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCce-eEEEecCCCccccccccCCCC----C-CC----ChH--HHHHHHHHHhcchhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPK----A-NL----ADE--DIKALTKRTQDGGTEV  241 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~----~-~~----~~~--~~~~l~~~v~~~~~~i  241 (340)
                      |.||++||++++|+++++++++|+. +||||||+ +++|+||+++++    + ++    +++  .+++|.+++++++++|
T Consensus       154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~I  232 (325)
T cd01336         154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV  232 (325)
T ss_pred             ehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHH
Confidence            8999999999999999999999975 59999999 999999999986    4 22    222  2689999999999999


Q ss_pred             hhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHH
Q 019519          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (340)
Q Consensus       242 ~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~  318 (340)
                      ++.  ++|+++||+|.++++++++|++|.+. +.++|++. ++|+|  ++|+|||+||++|++||++++++ +|+++|++
T Consensus       233 i~~--~~g~t~~~~a~~~~~i~~ail~~~~~-~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~  308 (325)
T cd01336         233 IKA--RKLSSAMSAAKAICDHVHDWWFGTPE-GEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSRE  308 (325)
T ss_pred             HHc--cccchHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHH
Confidence            996  35799999999999999999998531 35889874 78998  58999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 019519          319 GLEKLKPELKASIEKGV  335 (340)
Q Consensus       319 ~l~~s~~~l~~~~~~~~  335 (340)
                      +|++|++.|+++++.++
T Consensus       309 ~l~~s~~~l~~e~~~~~  325 (325)
T cd01336         309 KIDATAKELVEEKETAL  325 (325)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=1.9e-55  Score=416.04  Aligned_cols=290  Identities=37%  Similarity=0.637  Sum_probs=260.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC----CceEEEEecCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      |+||+|||| |.||+++++.++..++. ||+|+|+++  .++.++|+.|...    ..+++.   ++|+ +++++||+||
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~---~~d~-~~~~~aDiVi   75 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG---TNDY-EDIAGSDVVV   75 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe---CCCH-HHHCCCCEEE
Confidence            579999998 99999999999988877 999999987  5788888887642    234442   3565 6799999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHH
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R  180 (340)
                      +++|.|+++|++|.+++.+|+++++++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++|
T Consensus        76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~---~~~s~-~~~~~viG~gt~lds~r  151 (307)
T PRK06223         76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA---LKESG-FPKNRVIGMAGVLDSAR  151 (307)
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCcccEEEeCCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999997   78888 999999999 5899999


Q ss_pred             HHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----CChHHHHHHHHHHhcchhhhhhhhcCCCCccchH
Q 019519          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (340)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~  255 (340)
                      ++++||+++++++++|+++++|+||+ +++|+||++++++ +    +++++++++.+.+++++++|++.. +|++++|++
T Consensus       152 ~~~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~  229 (307)
T PRK06223        152 FRTFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAP  229 (307)
T ss_pred             HHHHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHH
Confidence            99999999999999999999999998 9999999998864 2    455568899999999999999864 578999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019519          256 AYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK  333 (340)
Q Consensus       256 A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  333 (340)
                      |.++++++++++.|.+   .++|++ +++|.| .+|++||+||++|++|+++++++ +|+++|+++|++|+++|++.++.
T Consensus       230 A~~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  305 (307)
T PRK06223        230 AASIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA  305 (307)
T ss_pred             HHHHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998754   478886 578887 68999999999999999999998 99999999999999999988764

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=1.4e-55  Score=428.76  Aligned_cols=294  Identities=19%  Similarity=0.169  Sum_probs=256.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCC--C--cHHHHHHHhcCCCC--ceEEEEecCCccccccC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~--~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~   95 (340)
                      ++.+|+|+||||++|+++.+.++.+..++     .|+|+|++  +  ++|+++||+|+.++  ..+..++   +.+++++
T Consensus       122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~---~~~ea~~  198 (452)
T cd05295         122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT---DLDVAFK  198 (452)
T ss_pred             CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE---CCHHHhC
Confidence            46799999999999999999999876442     69999994  3  69999999998731  2344442   3369999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |||+||+++|.||++||+|.|++..|.+|++++++.|.+++|  ++++|++|||+|++|+++   +++++++|++||+|+
T Consensus       199 daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~---~k~apgiP~~rVig~  275 (452)
T cd05295         199 DAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL---IKYAPSIPRKNIIAV  275 (452)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEe
Confidence            999999999999999999999999999999999999999999  899999999999999997   788934999999999


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCC-ceeEEEecCCCccccccccCCCCC-------------C----CChHH--HHHHHHH
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-------------N----LADED--IKALTKR  233 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-------------~----~~~~~--~~~l~~~  233 (340)
                      +.+|++|++++||+++|+++++| +++||||||+ ++||+||++++++             +    +.+++  .+++.+.
T Consensus       276 gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~  354 (452)
T cd05295         276 ARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVAT  354 (452)
T ss_pred             cchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHH
Confidence            77889999999999999999999 6799999999 9999999999853             1    12222  3567778


Q ss_pred             HhcchhhhhhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCC
Q 019519          234 TQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLG  310 (340)
Q Consensus       234 v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~  310 (340)
                      +++++.   .   +||+++||+|.|+++++++|++|++. ..++|++ +++|+|  |+|++||+||+++++|++.+.++ 
T Consensus       355 v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~-~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L-  426 (452)
T cd05295         355 LKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPP-GEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL-  426 (452)
T ss_pred             HHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC-
Confidence            888777   2   57899999999999999999999752 2588987 479998  69999999999999999999998 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHh
Q 019519          311 PLSDFEQEGLEKLKPELKASIEKGV  335 (340)
Q Consensus       311 ~L~~~E~~~l~~s~~~l~~~~~~~~  335 (340)
                      +|+++|+++|++|+++|+++.+.++
T Consensus       427 ~L~e~E~~kL~~S~~eL~~E~~~~~  451 (452)
T cd05295         427 ELSEILREVLKRITSDLIQEKLVAL  451 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999987663

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=2.2e-55  Score=415.11  Aligned_cols=288  Identities=28%  Similarity=0.477  Sum_probs=257.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC----cHHHHHHHhcCCC--C--ceEEEEecCCccccccCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT--R--SEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~----~~~~~~dl~~~~~--~--~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      |||+|+||+|.+|+++++.|+..++.+||+|+|+++    +++.++|+.|...  .  .++..   ++| ++++++||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~---~~d-~~~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI---SSD-LSDVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE---CCC-HHHhCCCCEE
Confidence            699999988999999999999999988999999954    5788899988742  1  23332   346 4679999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHH
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~  179 (340)
                      |+++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++   ++.+| +|++|+||+ |.||++
T Consensus        77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~---~~~~g-~~~~~viG~gt~LDs~  152 (309)
T cd05294          77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSL  152 (309)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---HHhcC-CCHHHEeeccchHHHH
Confidence            9999999999999999999999999999999999999999999999999999987   78999 999999999 689999


Q ss_pred             HHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C------CChHHHHHHHHHHhcchhhhhhhhcCCCCcc
Q 019519          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (340)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  252 (340)
                      |+++.||+++++++++|+++++||||+ +++|+||++++++ +      +.+..++++.+++++++++|++.   ||+++
T Consensus       153 R~~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~  228 (309)
T cd05294         153 RFKVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSE  228 (309)
T ss_pred             HHHHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCch
Confidence            999999999999999999999999998 8999999999864 2      12345788999999999999994   57899


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       253 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      ||+|.++++++++|++|++   .++|++ +++|+|  .+|+++|+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~~~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~  304 (309)
T cd05294         229 YGPASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKK  304 (309)
T ss_pred             hhHHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   478886 478876  34899999999999999999998 9999999999999999998


Q ss_pred             HHH
Q 019519          330 SIE  332 (340)
Q Consensus       330 ~~~  332 (340)
                      .++
T Consensus       305 ~~~  307 (309)
T cd05294         305 YTR  307 (309)
T ss_pred             HHh
Confidence            764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=3.4e-55  Score=413.04  Aligned_cols=285  Identities=37%  Similarity=0.625  Sum_probs=256.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC----CceEEEEecCCccccccCCCCEEEEcC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+|||| |.||+++++.++..++. ||+|+|+++  +.+.++|+.|...    ..+++.   ++|+ ++++|||+||+++
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~---t~d~-~~l~dADiVIit~   74 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG---TNDY-EDIAGSDVVVITA   74 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE---cCCH-HHhCCCCEEEEec
Confidence            689998 99999999999988877 999999987  5677888887642    224443   2564 7799999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chhHHHHHH
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKT  183 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld~~R~~~  183 (340)
                      |.|+++|++|.+.+.+|++++++++++|+++||++++|++|||+|++|+++   ++++| +|++||||+| .||++|+++
T Consensus        75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~---~~~s~-~~~~rviGlgt~lds~r~~~  150 (300)
T cd01339          75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA---YKASG-FPRNRVIGMAGVLDSARFRY  150 (300)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCHHHEEEecchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997   68888 9999999995 899999999


Q ss_pred             HHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----CChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHH
Q 019519          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA  258 (340)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a  258 (340)
                      ++|+++++++++|+++++|+||+ +++|+||++++++ +    +++++++++.+++++++++|++.+ |||+++|++|.+
T Consensus       151 ~la~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~  228 (300)
T cd01339         151 FIAEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA  228 (300)
T ss_pred             HHHHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHH
Confidence            99999999999999999999998 8999999999864 2    344558899999999999999976 679999999999


Q ss_pred             HHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 019519          259 GAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI  331 (340)
Q Consensus       259 ~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  331 (340)
                      +++++++|+.|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       229 ~~~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~  299 (300)
T cd01339         229 IAEMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI  299 (300)
T ss_pred             HHHHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999863   588887 578888 56999999999999999999998 999999999999999999765

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=3.7e-55  Score=411.23  Aligned_cols=271  Identities=25%  Similarity=0.295  Sum_probs=241.2

Q ss_pred             eEEEEeCCC----cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 019519           56 RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC  129 (340)
Q Consensus        56 el~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~  129 (340)
                      .|+|+|+++    ++|+++||.|+..  ...+..   ++|.+++++|||+||++||.|+++|++|.+++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999976    5899999999872  223432   2454688999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHHHHHHHcCCCCCCC-ceeEEEecCC
Q 019519          130 SAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAG  206 (340)
Q Consensus       130 ~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~~la~~l~v~~~~v-~~~v~G~hg~  206 (340)
                      +.|.++ +|++++|++|||+|+||+++   ++.+| +|++|+||+ |.||++||++++|+++++++++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~---~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL---KEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999999997   78899 999999999 89999999999999999999999 6899999999


Q ss_pred             CccccccccCCC----CC-C----CChHH--HHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCc
Q 019519          207 ITILPLFSQATP----KA-N----LADED--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPD  275 (340)
Q Consensus       207 ~~~vp~~s~~~v----~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~  275 (340)
                       ++||+||++++    ++ +    +.+++  .+++.+++++++++|++.  +||+|+||+|.++++++++|+++++ .+.
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~--~kg~t~~~ia~a~~~iv~ai~~~~~-~~~  243 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTP-EGT  243 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence             99999999999    54 2    22333  678999999999999996  3689999999999999999998532 235


Q ss_pred             EEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019519          276 VVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFA  338 (340)
Q Consensus       276 v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  338 (340)
                      ++|++ +++|+|  |+|+|||+||++|++|++.++++ +|+++|+++|++|+++|+++.+++++.|
T Consensus       244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~  308 (309)
T PLN00135        244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCL  308 (309)
T ss_pred             EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88987 479998  58999999999999999999898 9999999999999999999999998765

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=7.4e-54  Score=403.41  Aligned_cols=271  Identities=22%  Similarity=0.269  Sum_probs=236.9

Q ss_pred             eEEEEeCCC----cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 019519           56 RLALYDIAN----TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS  130 (340)
Q Consensus        56 el~L~D~~~----~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~  130 (340)
                      .|+|+|+++    ++|+++||.|+.+ ..+....  ++|++++++|||+||+|||.|+++|++|.+++..|+++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            899999976    5899999999972 1122222  35666899999999999999999999999999999999999999


Q ss_pred             HHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHHHHHHHcCCCCCCCcee-EEEecCCC
Q 019519          131 AIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGI  207 (340)
Q Consensus       131 ~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~~la~~l~v~~~~v~~~-v~G~hg~~  207 (340)
                      .|++++| ++++|++|||+|+||++++  ++.+| +|++ +||+ |.||++||++++|++++++|++|+.+ ||||||+ 
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t~v~~--~~~sg-~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~-  169 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNCLVAM--LHAPK-LSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE-  169 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHHHHHH--HHcCC-CCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence            9999995 5889999999999999872  36677 9998 9999 89999999999999999999999655 9999999 


Q ss_pred             ccccccccCCC--CC-C------CChH-HHHHHHHHHhcchhhhhhhhcCCCCccchHH-HHHHHHHHHHHcCCCCCCcE
Q 019519          208 TILPLFSQATP--KA-N------LADE-DIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAIFADACLKGLNGVPDV  276 (340)
Q Consensus       208 ~~vp~~s~~~v--~~-~------~~~~-~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A-~a~~~li~ai~~~~~~~~~v  276 (340)
                      +++|+||++++  ++ +      ++++ .++++.+++++++++|++   +||+|+|++| .++++++++|+++++. +.+
T Consensus       170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~i  245 (313)
T TIGR01756       170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GEV  245 (313)
T ss_pred             ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence            99999999999  54 2      2332 367899999999999999   5789999977 6999999999996543 368


Q ss_pred             EEeee-ee-C-CC--CCccEEEEeEEEcCCceEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019519          277 VECSF-VQ-S-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLEKLKPELKASIEKGVKFA  338 (340)
Q Consensus       277 ~~~~~-~~-g-~~--~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  338 (340)
                      +|++. ++ + +|  ++|+|+|+||++|++|++++++ + +|+++|+++|++|+++|+++.+.+++.|
T Consensus       246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~~~~~  312 (313)
T TIGR01756       246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETALKAL  312 (313)
T ss_pred             EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99975 64 3 78  4799999999999999999999 8 9999999999999999999999998866

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=7.6e-51  Score=376.66  Aligned_cols=254  Identities=34%  Similarity=0.503  Sum_probs=228.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC--CcceEEEEeCCC--cHHHHHHHhcCCCCc-eEEEEecCCccccccCCCCEEEEcCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~--~~~el~L~D~~~--~~~~~~dl~~~~~~~-~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |+||||+|.+|+++++.|+..+  ...||+|+|+++  +++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899987999999999999988  778999999987  688999999886321 22322 24677899999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHHHHHH
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~~l  185 (340)
                      .|+++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++   ++++| +|++|+||+|.+|+.|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~---~~~sg-~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV---WRYSG-LPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997   78888 999999999659999999999


Q ss_pred             HHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHHH
Q 019519          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA  265 (340)
Q Consensus       186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~a  265 (340)
                      |+++++++++|++++||+||+ +++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            999999999999999999999 8999999763                                     66889999999


Q ss_pred             HHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 019519          266 CLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI  331 (340)
Q Consensus       266 i~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  331 (340)
                      |++|.+   .++|++ +++|+|  ++|++||+||++|++|+++++++ +|+++|+++|+++++.++..+
T Consensus       198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~  262 (263)
T cd00650         198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL  262 (263)
T ss_pred             HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999853   578886 478887  68999999999999999888887 999999999999999998765

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.9e-46  Score=327.65  Aligned_cols=304  Identities=29%  Similarity=0.352  Sum_probs=266.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC-----cceEEEEeCCC----cHHHHHHHhcCCCCceEEEEecCCccccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~-----~~el~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (340)
                      .+.+|.|+||+|++|+++.+.++.+..     -..++|+|+.+    ++|..|+|+|+.++ .+.....++|..++|+|.
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccC
Confidence            468999999999999999999986422     23899999987    58999999999864 333333456778999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccch
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~l  176 (340)
                      |+.|+.+++||++||+|.|++..|.+|++..+..+++|+ |+++++++.||++..+-++   .++++++|.++|-.+|.|
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~---~k~ApsIP~kNfs~lTRL  158 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALIL---KKFAPSIPEKNFSALTRL  158 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHH---hhhCCCCchhcchhhhhh
Confidence            999999999999999999999999999999999999998 8999999999999999887   678888999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCC-ceeEEEecCCCccccccccCCCCC---C------CChH-HH-HHHHHHHhcchhhhhhh
Q 019519          177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA---N------LADE-DI-KALTKRTQDGGTEVVEA  244 (340)
Q Consensus       177 d~~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~---~------~~~~-~~-~~l~~~v~~~~~~i~~~  244 (340)
                      |++|+..++|.++|++.++| +..+||+|+. +|+|+..++++..   .      ..|. ++ .++.+.|++||..+++.
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            99999999999999999999 6899999998 9999999999852   1      2233 33 58999999999999986


Q ss_pred             hcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHH
Q 019519          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (340)
Q Consensus       245 ~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~  321 (340)
                        .|.++.+|.|.++++++++|+.+++.. .++++. +.+|.|  |+|..||+||++ ++|-|+++.-.+++++-++++.
T Consensus       238 --rk~SSA~SaA~aacDhi~dw~~gTpeG-~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~  313 (332)
T KOG1496|consen  238 --RKLSSAMSAAKAACDHIRDWWFGTPEG-TFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMD  313 (332)
T ss_pred             --hhhhhhhhHHHhHhhhhhheecCCCCc-cEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhh
Confidence              357899999999999999999999865 356665 579988  999999999999 6799998884499999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 019519          322 KLKPELKASIEKGVKFAN  339 (340)
Q Consensus       322 ~s~~~l~~~~~~~~~~~~  339 (340)
                      .++++|+++.+.+..+|+
T Consensus       314 ~t~~EL~eEkd~a~~~l~  331 (332)
T KOG1496|consen  314 LTAKELKEEKDLAYSCLS  331 (332)
T ss_pred             hhHHHHHHhHHHHHHhhc
Confidence            999999999999988775

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=100.00  E-value=6.4e-32  Score=264.38  Aligned_cols=280  Identities=20%  Similarity=0.191  Sum_probs=191.9

Q ss_pred             CeEEEEcCCCChHHHHHH----HHHhCC--C-cceEEEEeCCC-cH----HHHHHHhcCC-CCceEEEEecCCccccccC
Q 019519           29 RKVAVLGAAGGIGQPLAL----LMKLNP--L-VSRLALYDIAN-TP----GVAADVGHIN-TRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~----~l~~~~--~-~~el~L~D~~~-~~----~~~~dl~~~~-~~~~v~~~~~~~d~~~al~   95 (340)
                      |||+|||| |+   ++++    .|+...  + .+||+|+|+++ ..    ..+..+.+.. ...++..   ++|+++|++
T Consensus         1 ~KI~iIGg-GS---~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~---ttD~~~Al~   73 (425)
T cd05197           1 VKIAIIGG-GS---SFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEK---TMDLEDAII   73 (425)
T ss_pred             CEEEEECC-ch---HhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEE---eCCHHHHhC
Confidence            69999998 74   3444    334333  2 58999999997 22    2223333222 2334544   478999999


Q ss_pred             CCCEEEEcC---CC---------CCCCC---CC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 019519           96 DSDVVIIPA---GV---------PRKPG---MT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (340)
Q Consensus        96 ~aDiVi~~a---g~---------~~~~g---~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  155 (340)
                      ||||||.+.   |.         |.++|   ++     ......+|+++++++++.|+++||+||+|++|||+|++|+++
T Consensus        74 gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~  153 (425)
T cd05197          74 DADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV  153 (425)
T ss_pred             CCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH
Confidence            999999974   32         44554   22     567778999999999999999999999999999999999987


Q ss_pred             HHHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE-ecCCCccccccccCCCCC--------------
Q 019519          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPKA--------------  220 (340)
Q Consensus       156 ~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G-~hg~~~~vp~~s~~~v~~--------------  220 (340)
                         ++.   +|+.|+||+|+. +.|+++.+|+.+|+++++|+++++| ||+.     .||..++++              
T Consensus       154 ---~~~---~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~  221 (425)
T cd05197         154 ---RRY---VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEK  221 (425)
T ss_pred             ---HHh---CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhcc
Confidence               554   467899999877 7899999999999999999999999 9974     233222110              


Q ss_pred             ------------------------------C------CC----hH-------------HH----HHHHHHHhcch--hhh
Q 019519          221 ------------------------------N------LA----DE-------------DI----KALTKRTQDGG--TEV  241 (340)
Q Consensus       221 ------------------------------~------~~----~~-------------~~----~~l~~~v~~~~--~~i  241 (340)
                                                    +      +.    ++             +.    +++.+..++..  ...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~  301 (425)
T cd05197         222 SKDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSV  301 (425)
T ss_pred             CccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCCh
Confidence                                          0      00    00             00    01111111100  000


Q ss_pred             hhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHH
Q 019519          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQ  317 (340)
Q Consensus       242 ~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~  317 (340)
                      -++ ..++.+.++  ..++++++||++|.+.   ++.++ -++|.+   |+|.++++||+++++|+.++ .+++|++...
T Consensus       302 ~~~-~~r~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~-~vg~lp~~~~  374 (425)
T cd05197         302 VEL-IKRGGRKYS--EAAIPLIRALLNDNGA---RFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPI-KVGPLDRFVK  374 (425)
T ss_pred             hhh-hhcCCcccH--HHHHHHHHHHHcCCCe---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-ccCCCCHHHH
Confidence            000 012345555  8899999999998752   44444 477875   89999999999999999997 6679999888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 019519          318 EGLEKLKPELKASIEKG  334 (340)
Q Consensus       318 ~~l~~s~~~l~~~~~~~  334 (340)
                      ++++.-...-+-.++.+
T Consensus       375 ~Li~~~~~~e~l~veAa  391 (425)
T cd05197         375 GLLRQRKMRERLALEAF  391 (425)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            87776444433344433

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=3.5e-33  Score=234.77  Aligned_cols=137  Identities=44%  Similarity=0.683  Sum_probs=124.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCc--eEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+||||+|.||+++++.|++.++++||+|+|+++  ++++++||+|.....  ......  .+ +++++|||+||+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~~aDivvita   77 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS--GD-YEALKDADIVVITA   77 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE--SS-GGGGTTESEEEETT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc--cc-ccccccccEEEEec
Confidence            699999988999999999999999999999999996  799999999986432  333332  33 68999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      |.|+++|++|.+++..|.+++++++++|.+++|+++++++|||+|++|+++   ++++| +|++|+||
T Consensus        78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~---~~~s~-~~~~kviG  141 (141)
T PF00056_consen   78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA---QKYSG-FPPNKVIG  141 (141)
T ss_dssp             STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH---HHHHT-SSGGGEEE
T ss_pred             cccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH---HHhhC-cCcccCcC
Confidence            999999999999999999999999999999999999999999999999997   78898 99999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=8.9e-33  Score=240.61  Aligned_cols=159  Identities=37%  Similarity=0.551  Sum_probs=144.0

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-----------CCChHHHHHHHHHHhcchhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~  242 (340)
                      |.||++||++++|+++|++|++++++|||+||+ ++||+||++++++           .+++++++++.+++++++++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            679999999999999999999999999999999 9999999999863           2566778999999999999999


Q ss_pred             hhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCc-cEEEEeEEEcCCceEEEecCCCCCHHHHH
Q 019519          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TEL-PFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (340)
Q Consensus       243 ~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~-~~~svP~~ig~~Gv~~i~~~~~L~~~E~~  318 (340)
                      +.+.  |+++||+|.++++++++|+.|.+   .++|++ +.+|+|  +++ +|||+||++|++|++++++.++|+++|++
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  154 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE  154 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred             eecc--ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence            9652  89999999999999999999973   578886 578988  344 99999999999999999993399999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 019519          319 GLEKLKPELKASIEKGVKFA  338 (340)
Q Consensus       319 ~l~~s~~~l~~~~~~~~~~~  338 (340)
                      +|++|++.|+++++++++|+
T Consensus       155 ~l~~sa~~l~~~i~~~~~f~  174 (174)
T PF02866_consen  155 KLKESAKELKKEIEKGLEFV  174 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999985

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>PRK15076 alpha-galactosidase; Provisional

Probab=100.00  E-value=1.3e-31  Score=262.94  Aligned_cols=286  Identities=16%  Similarity=0.166  Sum_probs=194.8

Q ss_pred             CCeEEEEcCCCChHHHHHH--HHH-hCCCc-ceEEEEeCCC--cH-HHHHHHhcCC----CCceEEEEecCCccccccCC
Q 019519           28 DRKVAVLGAAGGIGQPLAL--LMK-LNPLV-SRLALYDIAN--TP-GVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~--~l~-~~~~~-~el~L~D~~~--~~-~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~   96 (340)
                      |+||+|||| |++|++.++  .++ ..++. .||+|+|+++  .+ +.++ +.+..    ...+++.   ++|++++++|
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~~---ttD~~eal~d   75 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKITA---TTDRREALQG   75 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEEE---ECCHHHHhCC
Confidence            479999998 999988877  665 33444 4999999987  22 3332 33321    2235554   3688899999


Q ss_pred             CCEEEEcCCCC-CCCC--------------CCHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHH
Q 019519           97 SDVVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP  153 (340)
Q Consensus        97 aDiVi~~ag~~-~~~g--------------~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~  153 (340)
                      |||||++++.+ ++++              ++|.+.        +.+|+++++++++.|+++||+||+|++|||+|++|+
T Consensus        76 ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~  155 (431)
T PRK15076         76 ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTW  155 (431)
T ss_pred             CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHH
Confidence            99999999876 4434              445555        899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCceEeccc--hhHHHHHHHHHHHcCCCCCCCceeEEE-ecCC---------Ccccccccc---CC-
Q 019519          154 IAAEVFKKAGTYNEKKLFGVTT--LDVVRAKTFYAGKANVNVAEVNVPVVG-GHAG---------ITILPLFSQ---AT-  217 (340)
Q Consensus       154 ~~~~~~~~sg~~~~~kviG~~~--ld~~R~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp~~s~---~~-  217 (340)
                      ++   +   + +|+.||||+|+  +++   .+.+|+.+|+++++|++++.| ||..         ++.+|.+..   .. 
T Consensus       156 ~~---~---~-~~~~rviG~c~~~~~~---~~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~  225 (431)
T PRK15076        156 AM---N---R-YPGIKTVGLCHSVQGT---AEQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQ  225 (431)
T ss_pred             HH---h---c-CCCCCEEEECCCHHHH---HHHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccC
Confidence            86   3   4 88899999983  565   388999999999999999999 3332         234442111   00 


Q ss_pred             ------CC-----------C----------C-C----ChHHHHHHHH----HHh------cchhhhh-hhhcCCCC--cc
Q 019519          218 ------PK-----------A----------N-L----ADEDIKALTK----RTQ------DGGTEVV-EAKAGKGS--AT  252 (340)
Q Consensus       218 ------v~-----------~----------~-~----~~~~~~~l~~----~v~------~~~~~i~-~~~~~kg~--~~  252 (340)
                            +.           +          + +    .++.++++..    ..+      ....+.. +...++..  ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (431)
T PRK15076        226 TRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKR  305 (431)
T ss_pred             chhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCcccccc
Confidence                  00           0          0 1    2222222211    100      1111111 11111101  22


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          253 LSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       253 ~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      +  +..++++++||++|.+   .++.+++ ++|.+   |+|.++++||+++++|+.++ .+++||+..+++++.-...=+
T Consensus       306 ~--~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~-~~g~lP~~~~~l~~~~~~~e~  379 (431)
T PRK15076        306 S--REYASTIIEAIETGEP---SVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPT-KVGDLPPQLAALNRTNINVQE  379 (431)
T ss_pred             c--hHHHHHHHHHHhcCCc---eEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceee-ecCCCCHHHHHHHHHHHHHHH
Confidence            3  4789999999998875   2444554 67875   89999999999999999997 567999999998877554444


Q ss_pred             HHHHHH
Q 019519          329 ASIEKG  334 (340)
Q Consensus       329 ~~~~~~  334 (340)
                      -.++.+
T Consensus       380 l~veAa  385 (431)
T PRK15076        380 LTVEAA  385 (431)
T ss_pred             HHHHHH
Confidence            344443

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=100.00  E-value=4.4e-31  Score=258.06  Aligned_cols=288  Identities=17%  Similarity=0.190  Sum_probs=192.8

Q ss_pred             CeEEEEcCCCChHH-HHHHHHHhC-C--CcceEEEEeCC-C-cH----HHHHHHhcCC-CCceEEEEecCCccccccCCC
Q 019519           29 RKVAVLGAAGGIGQ-PLALLMKLN-P--LVSRLALYDIA-N-TP----GVAADVGHIN-TRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        29 ~KI~IiGaaG~VG~-~~a~~l~~~-~--~~~el~L~D~~-~-~~----~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~a   97 (340)
                      |||+|||| |++-. .+...|+.. .  ..+||+|+|++ + ..    ..+.++.+.. ...++..   ++|+++|++||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~---t~d~~~al~ga   76 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHL---TTDRREALEGA   76 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEE---eCCHHHHhCCC
Confidence            69999998 85421 223344442 2  35899999999 5 21    1122222222 2334544   47899999999


Q ss_pred             CEEEEcCCCCCCCCCC--------------------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 019519           98 DVVIIPAGVPRKPGMT--------------------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~--------------------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~  157 (340)
                      ||||++++++..++++                    ......+|+++++++++.|+++|||||+|++|||+|++|+++  
T Consensus        77 dfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~--  154 (419)
T cd05296          77 DFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV--  154 (419)
T ss_pred             CEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH--
Confidence            9999998765544433                    334578999999999999999999999999999999999987  


Q ss_pred             HHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE-ecCC---------Cccccccc-------------
Q 019519          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAG---------ITILPLFS-------------  214 (340)
Q Consensus       158 ~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp~~s-------------  214 (340)
                       ++.+    +.|+||+|+.+ .|+++.+|+.+|+++++|+++++| ||..         ++.+|.+-             
T Consensus       155 -~k~~----~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~  228 (419)
T cd05296         155 -LRHT----GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGL  228 (419)
T ss_pred             -HHhc----cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhcccccccc
Confidence             4543    68999999875 799999999999999999999999 7765         24455211             


Q ss_pred             ---cCCC---C---CC------CChH--------------HHH----HHHHHHhcchh-hhhhhhcCCCCccchHHHHHH
Q 019519          215 ---QATP---K---AN------LADE--------------DIK----ALTKRTQDGGT-EVVEAKAGKGSATLSMAYAGA  260 (340)
Q Consensus       215 ---~~~v---~---~~------~~~~--------------~~~----~l~~~v~~~~~-~i~~~~~~kg~~~~s~A~a~~  260 (340)
                         ....   +   ++      +.++              .++    ++.+....... +..+....++.++|+  ..++
T Consensus       229 ~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~--e~a~  306 (419)
T cd05296         229 LFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYS--EAAL  306 (419)
T ss_pred             chHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchH--HHHH
Confidence               1000   0   00      0111              111    11122221100 000000123445566  8899


Q ss_pred             HHHHHHHcCCCCCCcEEEee-eeeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019519          261 IFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG  334 (340)
Q Consensus       261 ~li~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  334 (340)
                      ++++||++|.+.   ++.++ .++|.+   |+|.++++||.++++|+.++ .+++||+...++++.-...-+-.++.+
T Consensus       307 ~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~-~vg~lP~~~~~l~~~~~~~e~l~veAa  380 (419)
T cd05296         307 ALISAIYNDKGD---IHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPL-PVGPLPPAILGLIQQVKAYERLTIEAA  380 (419)
T ss_pred             HHHHHHhcCCCc---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-cCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988652   34444 477875   89999999999999999997 667999999888766444333334433

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.97  E-value=3e-29  Score=245.98  Aligned_cols=288  Identities=16%  Similarity=0.179  Sum_probs=190.1

Q ss_pred             CeEEEEcCCCCh-HHHHHHHHHhC-C-C-cceEEEEeCCC-cH----HHHHHHhcC-CCCceEEEEecCCccccccCCCC
Q 019519           29 RKVAVLGAAGGI-GQPLALLMKLN-P-L-VSRLALYDIAN-TP----GVAADVGHI-NTRSEVAGYMGNDQLGQALEDSD   98 (340)
Q Consensus        29 ~KI~IiGaaG~V-G~~~a~~l~~~-~-~-~~el~L~D~~~-~~----~~~~dl~~~-~~~~~v~~~~~~~d~~~al~~aD   98 (340)
                      |||+|||| |++ +..+...|++. . + .+||+|+|+++ ..    ..+..+.+. ....+++.   ++|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~---Ttdr~eAl~gAD   76 (437)
T cd05298           1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVY---TTDPEEAFTDAD   76 (437)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEE---ECCHHHHhCCCC
Confidence            79999998 743 11223344444 2 3 58999999997 22    222233222 22334544   478999999999


Q ss_pred             EEEEcC---CC---------CCCCCC---C-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 019519           99 VVIIPA---GV---------PRKPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (340)
Q Consensus        99 iVi~~a---g~---------~~~~g~---~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  158 (340)
                      |||.+.   |.         |.++|.   +     ......||+++++++++.|+++|||||+|++|||+|++|+++   
T Consensus        77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~---  153 (437)
T cd05298          77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL---  153 (437)
T ss_pred             EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---
Confidence            999974   32         445542   2     466788999999999999999999999999999999999987   


Q ss_pred             HHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE-ecCC----------Ccccccccc------------
Q 019519          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAG----------ITILPLFSQ------------  215 (340)
Q Consensus       159 ~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G-~hg~----------~~~vp~~s~------------  215 (340)
                      ++.   +|+.|+||+|+... .+...+|+.+|+++++++..+.| ||..          ++.+|.+-.            
T Consensus       154 ~~~---~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~  229 (437)
T cd05298         154 RRL---FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDS  229 (437)
T ss_pred             HHH---CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcccc
Confidence            444   67889999998775 47889999999999999999888 2221          234443210            


Q ss_pred             --C---C-------------------CCCC-----C-ChH--------------HHHHHHHHHhcchhh-----hhhhhc
Q 019519          216 --A---T-------------------PKAN-----L-ADE--------------DIKALTKRTQDGGTE-----VVEAKA  246 (340)
Q Consensus       216 --~---~-------------------v~~~-----~-~~~--------------~~~~l~~~v~~~~~~-----i~~~~~  246 (340)
                        .   .                   +.++     + .++              .+++..++..+...+     -.+..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~  309 (437)
T cd05298         230 DEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGST  309 (437)
T ss_pred             cccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhh
Confidence              0   0                   0000     0 111              011111111000000     000000


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHH
Q 019519          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (340)
Q Consensus       247 ~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~  322 (340)
                      ..+ ..  .|.+++++++||++|.+   .++++++ ++|.|   |+|+++|+||+||++|+.++ .+++||+...++++.
T Consensus       310 ~~~-~~--ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi-~vg~lP~~~~~l~~~  382 (437)
T cd05298         310 FHV-DV--HGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPL-VVGKIPTFYKGLMEQ  382 (437)
T ss_pred             hhc-cc--hHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceec-ccCCCCHHHHHHHHH
Confidence            011 11  35889999999999864   4677764 77876   78999999999999999997 667999999998776


Q ss_pred             HHHHHHHHHHHH
Q 019519          323 LKPELKASIEKG  334 (340)
Q Consensus       323 s~~~l~~~~~~~  334 (340)
                      -...-+-.++.+
T Consensus       383 ~~~~e~l~veAa  394 (437)
T cd05298         383 QVAYEKLLVEAY  394 (437)
T ss_pred             HHHHHHHHHHHH
Confidence            554444444443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.2e-28  Score=233.38  Aligned_cols=292  Identities=17%  Similarity=0.192  Sum_probs=193.0

Q ss_pred             CCCCeEEEEcCCCChHHHH--HHHHHhCC--CcceEEEEeCCC-cHHH----HHHHhc-CCCCceEEEEecCCccccccC
Q 019519           26 VPDRKVAVLGAAGGIGQPL--ALLMKLNP--LVSRLALYDIAN-TPGV----AADVGH-INTRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~--a~~l~~~~--~~~el~L~D~~~-~~~~----~~dl~~-~~~~~~v~~~~~~~d~~~al~   95 (340)
                      |++.||+|||| |+++..-  ...|.+.+  ..+||+|+|+++ ....    +..+.+ ...+.++..   ++|+++||+
T Consensus         1 m~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~---ttd~~eAl~   76 (442)
T COG1486           1 MKKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEA---TTDRREALE   76 (442)
T ss_pred             CCcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEE---ecCHHHHhc
Confidence            45689999998 8655433  22333433  357999999997 2222    222322 223334444   478999999


Q ss_pred             CCCEEEEcCC------------CCCCCCC---C-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 019519           96 DSDVVIIPAG------------VPRKPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (340)
Q Consensus        96 ~aDiVi~~ag------------~~~~~g~---~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  155 (340)
                      |||||+.+..            +|.|+|.   +     ......|+++++.+|++.|+++||+||++++|||+.++|+++
T Consensus        77 gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv  156 (442)
T COG1486          77 GADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV  156 (442)
T ss_pred             CCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH
Confidence            9999999642            3666652   2     455668999999999999999999999999999999999986


Q ss_pred             HHHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCC-CCCceeEEE-ecCC---------Ccccccccc---------
Q 019519          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG-GHAG---------ITILPLFSQ---------  215 (340)
Q Consensus       156 ~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~-~~v~~~v~G-~hg~---------~~~vp~~s~---------  215 (340)
                         .++   +|..|++|+|+... -....+|+.||+++ ++++..+.| +|..         .+.+|.+..         
T Consensus       157 ---~r~---~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~  229 (442)
T COG1486         157 ---RRL---YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPS  229 (442)
T ss_pred             ---HHh---CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCC
Confidence               554   45349999998765 47899999999975 999999888 3322         122221111         


Q ss_pred             --------------CC----CC---CC------C-----------------ChHHHHHHHHHH----hc-chhhhhhhhc
Q 019519          216 --------------AT----PK---AN------L-----------------ADEDIKALTKRT----QD-GGTEVVEAKA  246 (340)
Q Consensus       216 --------------~~----v~---~~------~-----------------~~~~~~~l~~~v----~~-~~~~i~~~~~  246 (340)
                                    ..    +.   ++      +                 ..+++.+..+..    .+ .-.+..+...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~  309 (442)
T COG1486         230 EPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELE  309 (442)
T ss_pred             ccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhh
Confidence                          00    00   00      0                 011111111100    00 0000000011


Q ss_pred             CCCCc--cchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHH
Q 019519          247 GKGSA--TLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (340)
Q Consensus       247 ~kg~~--~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l  320 (340)
                      .++.+  .++  .++++++.||++|++.   ++.+.+ ++|.+   |+|.++++||+++++|++++. .|+||+..++++
T Consensus       310 ~~~~~~~~~~--e~a~~ii~Ai~~~~~~---~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~-~g~lP~~~~~l~  383 (442)
T COG1486         310 KRIGAGKYSS--EYASNIINAIENNKPS---RIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLA-VGDLPEFVKGLM  383 (442)
T ss_pred             hcCCcccccH--HHHHHHHHHHhcCCce---EEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccc-cCCCCHHHHHHH
Confidence            22333  566  7799999999999763   454554 78875   899999999999999999964 579999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 019519          321 EKLKPELKASIEKG  334 (340)
Q Consensus       321 ~~s~~~l~~~~~~~  334 (340)
                      +.....-+-.++.+
T Consensus       384 ~~~i~~e~l~veA~  397 (442)
T COG1486         384 HTNINVEELTVEAA  397 (442)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88766555555544

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.96  E-value=3.8e-27  Score=231.63  Aligned_cols=286  Identities=17%  Similarity=0.143  Sum_probs=194.7

Q ss_pred             CeEEEEcCCCChHHHHHH--HHHhC-CC-cceEEEEeCCC--cHHHHHHHhcC----CCCceEEEEecCCccccccCCCC
Q 019519           29 RKVAVLGAAGGIGQPLAL--LMKLN-PL-VSRLALYDIAN--TPGVAADVGHI----NTRSEVAGYMGNDQLGQALEDSD   98 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~--~l~~~-~~-~~el~L~D~~~--~~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~~aD   98 (340)
                      +||+|||| |.+|++.+.  .++.. .. ..+|+|+|+++  .+....++.+.    ....++..   ++|++++++|||
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~---ttD~~eal~~AD   76 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEA---TTDRREALDGAD   76 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhcCCC
Confidence            58999998 999998776  45433 33 34999999987  34444444332    12335554   368889999999


Q ss_pred             EEEEcCCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 019519           99 VVIIPAGVPRKPGMTR----------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (340)
Q Consensus        99 iVi~~ag~~~~~g~~r----------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~  156 (340)
                      +||++++.+..++.++                      .....+|++++.++++.++++||++|++++|||++++|+++ 
T Consensus        77 ~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~-  155 (423)
T cd05297          77 FVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL-  155 (423)
T ss_pred             EEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH-
Confidence            9999987544333332                      56678999999999999999999999999999999999987 


Q ss_pred             HHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE-ecCC---------Ccccccccc-----------
Q 019519          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAG---------ITILPLFSQ-----------  215 (340)
Q Consensus       157 ~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp~~s~-----------  215 (340)
                        ++.++    .|++|+|+. +.++++.+|+.+++++++|+++++| ||..         ++.+|.+-.           
T Consensus       156 --~k~~~----~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~  228 (423)
T cd05297         156 --NRYTP----IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQ  228 (423)
T ss_pred             --HHhCC----CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchh
Confidence              56554    799999865 6789999999999999999999999 3322         244443111           


Q ss_pred             CC-CC-------C-----------C------CChHHHHH------------------HHHHHhcchhhhhhh--hcCCCC
Q 019519          216 AT-PK-------A-----------N------LADEDIKA------------------LTKRTQDGGTEVVEA--KAGKGS  250 (340)
Q Consensus       216 ~~-v~-------~-----------~------~~~~~~~~------------------l~~~v~~~~~~i~~~--~~~kg~  250 (340)
                      .. +.       +           +      ..++....                  +.......  ...+.  ....+.
T Consensus       229 ~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  306 (423)
T cd05297         229 LSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKL--ILAEIDKEELDPV  306 (423)
T ss_pred             cccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhh--ccchhcchhcccc
Confidence            10 00       0           0      00011111                  11111000  00000  000122


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE  326 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  326 (340)
                      ..++  ..++++++||++|++   .++.+++ ++|.+   |+|.++++||+|+++|+.++ .+++|++...++++.-...
T Consensus       307 ~~~~--e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~-~~g~lp~~~~~l~~~~~~~  380 (423)
T cd05297         307 KRSG--EYASPIIEALVTGKP---RRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPE-KIGPLPPQLAALIRPRINV  380 (423)
T ss_pred             ccch--HHHHHHHHHHhcCCc---eEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceec-ccCCCCHHHHHHHHHHHHH
Confidence            2334  778999999998865   3444554 77875   89999999999999999997 6679999999988775544


Q ss_pred             HHHHHHHH
Q 019519          327 LKASIEKG  334 (340)
Q Consensus       327 l~~~~~~~  334 (340)
                      -+-.++.+
T Consensus       381 e~l~veA~  388 (423)
T cd05297         381 QELAVEAA  388 (423)
T ss_pred             HHHHHHHH
Confidence            44444443

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.87  E-value=3.2e-21  Score=167.39  Aligned_cols=151  Identities=21%  Similarity=0.208  Sum_probs=108.3

Q ss_pred             eEEEEcCCCChHHHH--HHHHHhCCC--cceEEEEeCCC-c----HHHHHHHhc-CCCCceEEEEecCCccccccCCCCE
Q 019519           30 KVAVLGAAGGIGQPL--ALLMKLNPL--VSRLALYDIAN-T----PGVAADVGH-INTRSEVAGYMGNDQLGQALEDSDV   99 (340)
Q Consensus        30 KI~IiGaaG~VG~~~--a~~l~~~~~--~~el~L~D~~~-~----~~~~~dl~~-~~~~~~v~~~~~~~d~~~al~~aDi   99 (340)
                      ||+|||| |++-...  ...+...+.  .+||+|+|+++ .    ...+..+.. ...+.+++.+   +|+++|++||||
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~t---td~~eAl~gADf   76 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEAT---TDRREALEGADF   76 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEE---SSHHHHHTTESE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEe---CCHHHHhCCCCE
Confidence            8999998 8765543  224444442  46999999997 2    122333322 2234566653   789999999999


Q ss_pred             EEEcCC------------CCCCCCCC----------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 019519          100 VIIPAG------------VPRKPGMT----------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (340)
Q Consensus       100 Vi~~ag------------~~~~~g~~----------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~  157 (340)
                      ||++..            .|.++|..          ......|+++++.++++.|+++|||||+||+|||+..+|+++  
T Consensus        77 Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~--  154 (183)
T PF02056_consen   77 VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL--  154 (183)
T ss_dssp             EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH--
T ss_pred             EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH--
Confidence            999754            36666532          467788999999999999999999999999999999999987  


Q ss_pred             HHHHhCCCCCCceEeccchhHHHHHHHHHHHcCC
Q 019519          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV  191 (340)
Q Consensus       158 ~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v  191 (340)
                       .+.   +|..|++|+|+... -+...+|+.||+
T Consensus       155 -~r~---~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  155 -SRY---TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             -HHH---STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             -HHh---CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence             455   45589999998765 478889998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.86  E-value=1e-08  Score=89.71  Aligned_cols=117  Identities=23%  Similarity=0.366  Sum_probs=79.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--c---HHHHHH-Hh----cCC--------CCceEEEEecCCccc
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T---PGVAAD-VG----HIN--------TRSEVAGYMGNDQLG   91 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~---~~~~~d-l~----~~~--------~~~~v~~~~~~~d~~   91 (340)
                      ||+|+|| |.+|..++..++..|+  +++|+|.++  .   .....+ +.    ...        ...++...   +|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~---~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT---TDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE---SSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc---cCHH
Confidence            7999998 9999999999999998  999999986  1   111111 11    111        12356654   5776


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-cHHHHHHHHHHhCCCCCCc
Q 019519           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTYNEKK  169 (340)
Q Consensus        92 ~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~-~t~~~~~~~~~sg~~~~~k  169 (340)
                      ++. +||+||.+.              .++.++.+++...+++++ |++++  .||.... ++.++    ...  -.|+|
T Consensus        75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i~~la----~~~--~~p~R  131 (180)
T PF02737_consen   75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSISELA----AAL--SRPER  131 (180)
T ss_dssp             GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-HHHHH----TTS--STGGG
T ss_pred             HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCHHHHH----hcc--CcCce
Confidence            655 999999996              478999999999999999 57755  8888774 55443    222  35778


Q ss_pred             eEeccc
Q 019519          170 LFGVTT  175 (340)
Q Consensus       170 viG~~~  175 (340)
                      ++|++.
T Consensus       132 ~ig~Hf  137 (180)
T PF02737_consen  132 FIGMHF  137 (180)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            888864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.82  E-value=2.9e-08  Score=93.22  Aligned_cols=119  Identities=24%  Similarity=0.353  Sum_probs=87.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--c-HHH--HH----HHhcCC---------CCceEEEEecCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PGV--AA----DVGHIN---------TRSEVAGYMGND   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~-~~~--~~----dl~~~~---------~~~~v~~~~~~~   88 (340)
                      ..+||+|||| |.+|+.+|+.++..++  +|+|+|+++  . .+.  ..    .+....         ...+++.   ++
T Consensus         2 ~i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~---~~   75 (307)
T COG1250           2 EIKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITP---TT   75 (307)
T ss_pred             CccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc---cC
Confidence            3569999998 9999999999998777  999999985  1 111  11    111111         1224443   34


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-cHHHHHHHHHHhCCCC
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTYN  166 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~-~t~~~~~~~~~sg~~~  166 (340)
                      |+ .++++||+||.++              .+|.++.+++..++++++ |++++  .||.+.+ ++.+++    .+  -.
T Consensus        76 ~~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~----~~--~r  132 (307)
T COG1250          76 DL-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAE----AL--KR  132 (307)
T ss_pred             ch-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHH----Hh--CC
Confidence            54 5899999999996              589999999999999999 68865  9999984 666542    22  45


Q ss_pred             CCceEecc
Q 019519          167 EKKLFGVT  174 (340)
Q Consensus       167 ~~kviG~~  174 (340)
                      |+|++|++
T Consensus       133 per~iG~H  140 (307)
T COG1250         133 PERFIGLH  140 (307)
T ss_pred             chhEEEEe
Confidence            78999996

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.75  E-value=9e-08  Score=91.58  Aligned_cols=115  Identities=19%  Similarity=0.243  Sum_probs=83.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHH-------------HH-hcCCCCceEEEEecCCcccccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-------------DV-GHINTRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~-------------dl-~~~~~~~~v~~~~~~~d~~~al   94 (340)
                      |||+|+|. |.||...+..|++.|+  +|+++|+++.+-..+             +| .+.....++..+   +|+++|+
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT---td~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT---TDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE---cCHHHHH
Confidence            79999997 9999999999999998  999999987221111             12 111223457764   6889999


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHH
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIA  155 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~t~~~  155 (340)
                      +++|+++++.|.|.++.-      ..++..+...++.|.++.+...+|+.  |-|++....+-
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~  131 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR  131 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence            999999999999876632      24567788888888888765344443  77887766554

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.68  E-value=1.2e-07  Score=90.18  Aligned_cols=119  Identities=14%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHH-----H--H-HHhcCC-----CCceEEEEecCCcccccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGV-----A--A-DVGHIN-----TRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~-----~--~-dl~~~~-----~~~~v~~~~~~~d~~~al   94 (340)
                      .||+|||+ |.+|+.++..++..|+  +|+|+|+++ ....     .  + .+....     ...+++..   +++++++
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~---~~l~~av   81 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV---ATIEACV   81 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec---CCHHHHh
Confidence            59999998 9999999999999998  999999985 1111     0  0 111110     12345542   5677889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      ++||+|+.++              .+|.++.+++...+.+++| ++  |+.||.+.+...-+   ....  -.|+|++|+
T Consensus        82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~l---a~~~--~~p~R~~g~  140 (321)
T PRK07066         82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPTDF---YARA--THPERCVVG  140 (321)
T ss_pred             cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHH---HHhc--CCcccEEEE
Confidence            9999999985              4788999999999999996 55  44899887543322   2222  346789998


Q ss_pred             c
Q 019519          174 T  174 (340)
Q Consensus       174 ~  174 (340)
                      +
T Consensus       141 H  141 (321)
T PRK07066        141 H  141 (321)
T ss_pred             e
Confidence            5

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.62  E-value=3.1e-07  Score=86.20  Aligned_cols=120  Identities=22%  Similarity=0.380  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHH----Hh-----cCCC---------CceEEEEecC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAAD----VG-----HINT---------RSEVAGYMGN   87 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~d----l~-----~~~~---------~~~v~~~~~~   87 (340)
                      ..+||+|||+ |.+|+.+|..++..++  +|+++|.++. ...+.+    +.     ....         ..++..+   
T Consensus         2 ~~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---   75 (287)
T PRK08293          2 DIKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT---   75 (287)
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe---
Confidence            3469999998 9999999999998887  9999999861 111110    10     0000         1245443   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCcc-HHHHHHHHHHhCCC
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNST-VPIAAEVFKKAGTY  165 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~-t~~~~~~~~~sg~~  165 (340)
                      +|+++++++||+||++.              ..+.+..+++.+.+.++++ ++++  ++|.+... +.+    .+...  
T Consensus        76 ~d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~~~----~~~~~--  133 (287)
T PRK08293         76 TDLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPSQF----AEATG--  133 (287)
T ss_pred             CCHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHHHH----HhhcC--
Confidence            56777899999999985              2457788888888888875 5533  67777643 333    23332  


Q ss_pred             CCCceEecc
Q 019519          166 NEKKLFGVT  174 (340)
Q Consensus       166 ~~~kviG~~  174 (340)
                      .+.|++|++
T Consensus       134 ~~~r~vg~H  142 (287)
T PRK08293        134 RPEKFLALH  142 (287)
T ss_pred             CcccEEEEc
Confidence            356888875

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.62  E-value=6.2e-07  Score=84.17  Aligned_cols=122  Identities=13%  Similarity=0.217  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HH-H--H---HH-HhcCC---------CCceEEEEecCCc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG-V--A---AD-VGHIN---------TRSEVAGYMGNDQ   89 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~-~--~---~d-l~~~~---------~~~~v~~~~~~~d   89 (340)
                      +.||+|||+ |.+|..+|..++..|+  +|+|+|.++.  .. .  .   ++ +.+..         ...+++..   +|
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~---~~   78 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT---TD   78 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee---CC
Confidence            349999998 9999999999999998  9999999861  11 1  0   01 11111         11345543   56


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~  167 (340)
                      + +++++||+||.+.              .++.++.+++...++++| + ++++  +||....-...+   ....  -.+
T Consensus        79 ~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~l---a~~~--~~~  136 (286)
T PRK07819         79 L-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMKL---AAAT--KRP  136 (286)
T ss_pred             H-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH---Hhhc--CCC
Confidence            6 6799999999996              478899999999999997 4 5544  888877443332   1223  346


Q ss_pred             CceEeccchh
Q 019519          168 KKLFGVTTLD  177 (340)
Q Consensus       168 ~kviG~~~ld  177 (340)
                      +|++|++..+
T Consensus       137 ~r~~g~hf~~  146 (286)
T PRK07819        137 GRVLGLHFFN  146 (286)
T ss_pred             ccEEEEecCC
Confidence            7899886433

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.60  E-value=3.5e-07  Score=95.92  Aligned_cols=119  Identities=19%  Similarity=0.236  Sum_probs=87.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c--HHH--HHH----H-hcCC--------CCceEEEEecCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AAD----V-GHIN--------TRSEVAGYMGND   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~--~~~--~~d----l-~~~~--------~~~~v~~~~~~~   88 (340)
                      +..||+|||| |.+|..+|..++..|+  +|+|+|.++ .  .+.  ..+    + .+..        ...+++.+   +
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT---L  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe---C
Confidence            3469999998 9999999999999998  999999986 1  111  111    1 1110        12356653   5


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-cHHHHHHHHHHhCCCC
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTYN  166 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-~t~~~~~~~~~sg~~~  166 (340)
                      |+ +++++||+||.++              .+++++.+++..+++++|| ++++  .||.+.+ ++.++    ...  -.
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~ia----~~~--~~  442 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLLA----KAL--KR  442 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhc--CC
Confidence            65 7799999999996              4789999999999999994 6654  9999884 55554    233  35


Q ss_pred             CCceEecc
Q 019519          167 EKKLFGVT  174 (340)
Q Consensus       167 ~~kviG~~  174 (340)
                      |+|++|++
T Consensus       443 p~r~ig~H  450 (714)
T TIGR02437       443 PENFCGMH  450 (714)
T ss_pred             cccEEEEe
Confidence            78999996

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.59  E-value=5.7e-07  Score=94.48  Aligned_cols=119  Identities=22%  Similarity=0.251  Sum_probs=87.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c--HHH--HH----HHh-cCC--------CCceEEEEecCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AA----DVG-HIN--------TRSEVAGYMGND   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~--~~~--~~----dl~-~~~--------~~~~v~~~~~~~   88 (340)
                      +..||+|||| |.+|..+|..++..|+  +|+|+|+++ .  .+.  ..    .+. +..        ...+++.+   +
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~---~  385 (715)
T PRK11730        312 PVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT---L  385 (715)
T ss_pred             ccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe---C
Confidence            3469999998 9999999999999998  999999986 1  111  11    111 110        12356653   5


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-cHHHHHHHHHHhCCCC
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTYN  166 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-~t~~~~~~~~~sg~~~  166 (340)
                      |+ +++++||+||.++              .+++++.+++..++++++| ++++  .||.+.+ ++.++    ...  -.
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~~~--~~  442 (715)
T PRK11730        386 DY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTISISLLA----KAL--KR  442 (715)
T ss_pred             CH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----hhc--CC
Confidence            65 7799999999996              4789999999999999995 6644  9999884 56654    233  34


Q ss_pred             CCceEecc
Q 019519          167 EKKLFGVT  174 (340)
Q Consensus       167 ~~kviG~~  174 (340)
                      |+|++|++
T Consensus       443 p~r~~g~H  450 (715)
T PRK11730        443 PENFCGMH  450 (715)
T ss_pred             CccEEEEe
Confidence            67999985

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.58  E-value=3.4e-07  Score=96.30  Aligned_cols=119  Identities=21%  Similarity=0.271  Sum_probs=87.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c--HHH--HHH-H----hcCC--------CCceEEEEecCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AAD-V----GHIN--------TRSEVAGYMGND   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~--~~~--~~d-l----~~~~--------~~~~v~~~~~~~   88 (340)
                      +..||+|||| |.+|+.++..++..|+  +|+|+|+++ .  ++.  ..+ +    ....        ...+++.+   +
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~---~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT---L  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---C
Confidence            3469999998 9999999999999998  999999986 1  111  111 1    1110        12356653   5


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-cHHHHHHHHHHhCCCC
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTYN  166 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-~t~~~~~~~~~sg~~~  166 (340)
                      |+ +++++||+||.++              .+|.++.+++..++++++| ++++  .||.+.+ ++.++    ...  -.
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~~~--~~  464 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIA----AVS--SR  464 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----hhc--CC
Confidence            65 6799999999986              5899999999999999995 6654  8999884 55554    233  34


Q ss_pred             CCceEecc
Q 019519          167 EKKLFGVT  174 (340)
Q Consensus       167 ~~kviG~~  174 (340)
                      |+|++|++
T Consensus       465 p~r~ig~H  472 (737)
T TIGR02441       465 PEKVIGMH  472 (737)
T ss_pred             ccceEEEe
Confidence            68999985

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.58  E-value=4.7e-07  Score=95.05  Aligned_cols=118  Identities=22%  Similarity=0.333  Sum_probs=86.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHH-hCCCcceEEEEeCCC-c--HH--HHHHH-----hcCC--------CCceEEEEecCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN-T--PG--VAADV-----GHIN--------TRSEVAGYMGND   88 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~-~~~~~~el~L~D~~~-~--~~--~~~dl-----~~~~--------~~~~v~~~~~~~   88 (340)
                      ..||+|||| |.+|..+|..++ ..|+  +|+|+|.++ .  .+  ...+.     .+..        ...+|+.+   +
T Consensus       309 i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~---~  382 (708)
T PRK11154        309 VNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT---T  382 (708)
T ss_pred             ccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe---C
Confidence            469999998 999999999988 7788  999999976 1  11  11111     1110        12356654   5


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-cHHHHHHHHHHhCCCC
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTYN  166 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~-~t~~~~~~~~~sg~~~  166 (340)
                      |+ ++++|||+||.++              .+|.++.+++..++++++ |++++  .||.+.+ ++.++    ...  -.
T Consensus       383 ~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la----~~~--~~  439 (708)
T PRK11154        383 DY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIA----AAA--AR  439 (708)
T ss_pred             Ch-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----Hhc--Cc
Confidence            65 7899999999996              589999999999999999 57754  8999884 55554    233  34


Q ss_pred             CCceEecc
Q 019519          167 EKKLFGVT  174 (340)
Q Consensus       167 ~~kviG~~  174 (340)
                      |+|++|++
T Consensus       440 p~r~ig~H  447 (708)
T PRK11154        440 PEQVIGLH  447 (708)
T ss_pred             ccceEEEe
Confidence            67999986

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.55  E-value=7e-07  Score=93.55  Aligned_cols=119  Identities=20%  Similarity=0.297  Sum_probs=86.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHH-hCCCcceEEEEeCCC-c--HHH--HH-HHh----cCC--------CCceEEEEecC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN-T--PGV--AA-DVG----HIN--------TRSEVAGYMGN   87 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~-~~~~~~el~L~D~~~-~--~~~--~~-dl~----~~~--------~~~~v~~~~~~   87 (340)
                      +..||+|||| |.+|+.+|..++ ..|+  +|+|+|+++ .  .+.  .. .+.    ...        ...+|+..   
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~---  376 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT---  376 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe---
Confidence            3469999998 999999999888 4788  999999986 1  111  11 111    110        12356653   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCC-ccHHHHHHHHHHhCCC
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVN-STVPIAAEVFKKAGTY  165 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d-~~t~~~~~~~~~sg~~  165 (340)
                      +|+ ++++|||+||.++              .+++++.+++..+++++++ ++++  .||.+. .++.++    ...  -
T Consensus       377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la----~~~--~  433 (699)
T TIGR02440       377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIA----AAA--S  433 (699)
T ss_pred             CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH----Hhc--C
Confidence            565 6799999999986              4789999999999999995 6644  899988 466554    222  3


Q ss_pred             CCCceEecc
Q 019519          166 NEKKLFGVT  174 (340)
Q Consensus       166 ~~~kviG~~  174 (340)
                      .|+|++|++
T Consensus       434 ~p~r~~g~H  442 (699)
T TIGR02440       434 RPENVIGLH  442 (699)
T ss_pred             CcccEEEEe
Confidence            567999986

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.55  E-value=3.6e-08  Score=87.24  Aligned_cols=122  Identities=20%  Similarity=0.330  Sum_probs=89.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c-----HHHHHHHhcCC-----------------CCceEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-----PGVAADVGHIN-----------------TRSEVAG   83 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~-----~~~~~dl~~~~-----------------~~~~v~~   83 (340)
                      ++..|+|+|| |.+|+.+|+..+..++  .++|+|.++ .     ++....+.+..                 ...+++.
T Consensus        10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~   86 (298)
T KOG2304|consen   10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT   86 (298)
T ss_pred             cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence            3468999998 9999999999999998  999999987 1     23333332211                 0123333


Q ss_pred             EecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-ccHHHHHHHHHHh
Q 019519           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN-STVPIAAEVFKKA  162 (340)
Q Consensus        84 ~~~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d-~~t~~~~~~~~~s  162 (340)
                         ++|...++.|||+||.++              .+|+.+.+++.+.+++.|+..-+ ..||... .++.++.    ..
T Consensus        87 ---~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~i-l~tNTSSl~lt~ia~----~~  144 (298)
T KOG2304|consen   87 ---STNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSSTI-LATNTSSLSLTDIAS----AT  144 (298)
T ss_pred             ---cCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccceE-EeecccceeHHHHHh----hc
Confidence               367788899999998874              68999999999999999964333 3899987 4666642    11


Q ss_pred             CCCCCCceEeccc
Q 019519          163 GTYNEKKLFGVTT  175 (340)
Q Consensus       163 g~~~~~kviG~~~  175 (340)
                        -+|.+|.|++.
T Consensus       145 --~~~srf~GlHF  155 (298)
T KOG2304|consen  145 --QRPSRFAGLHF  155 (298)
T ss_pred             --cChhhhceeec
Confidence              46789999963

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.52  E-value=1.6e-06  Score=86.11  Aligned_cols=119  Identities=13%  Similarity=0.011  Sum_probs=79.5

Q ss_pred             CCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        21 ~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      |.....+.|||.|+||+||||++++..|+..++  +|+.+|.... +....+.+.....+++.... +-+..++.++|+|
T Consensus       113 ~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~V  188 (436)
T PLN02166        113 PVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQI  188 (436)
T ss_pred             CcccccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEE
Confidence            445556679999999999999999999998887  9999997531 00011111111123333221 1223457899999


Q ss_pred             EEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |++|+...  ....+..+++..|+....++++.+++.+.  .+|.+|
T Consensus       189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S  233 (436)
T PLN02166        189 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS  233 (436)
T ss_pred             EECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            99997532  22235667888999999999999998753  555553

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.49  E-value=2e-06  Score=80.49  Aligned_cols=119  Identities=21%  Similarity=0.371  Sum_probs=80.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHH-----H-HHHhcCC---------CCceEEEEecCCc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV-----A-ADVGHIN---------TRSEVAGYMGNDQ   89 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~-----~-~dl~~~~---------~~~~v~~~~~~~d   89 (340)
                      +.||+|||+ |.+|..++..++..++  +|+++|+++.   .+.     . .++.+..         ...++...   +|
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~---~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT---TD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---CC
Confidence            459999998 9999999999998887  9999999862   111     0 1111111         01245443   45


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (340)
                      + +++++||+||+++              ..+..+.+++.+.+.++++ ++++  .||-.++-...+   ....+  .+.
T Consensus        77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l---a~~~~--~~~  134 (282)
T PRK05808         77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL---AAATK--RPD  134 (282)
T ss_pred             H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH---HHhhC--CCc
Confidence            5 5689999999996              3567778888889998885 5544  787777543333   23332  346


Q ss_pred             ceEecc
Q 019519          169 KLFGVT  174 (340)
Q Consensus       169 kviG~~  174 (340)
                      +++|+.
T Consensus       135 r~ig~h  140 (282)
T PRK05808        135 KVIGMH  140 (282)
T ss_pred             ceEEee
Confidence            888875

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.45  E-value=9.1e-07  Score=77.75  Aligned_cols=121  Identities=21%  Similarity=0.306  Sum_probs=71.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC----------------CCCceEEEEecCCcccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----------------NTRSEVAGYMGNDQLGQ   92 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~----------------~~~~~v~~~~~~~d~~~   92 (340)
                      |||+|+|. |+||..+|..|+..|+  +++-+|+++.+  ...+...                ....++..+   +|.++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~--v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t---~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEK--VEALNNGELPIYEPGLDELLKENVSAGRLRAT---TDIEE   72 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHH--HHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE---SEHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHH--HHHHhhccccccccchhhhhccccccccchhh---hhhhh
Confidence            79999997 9999999999999998  99999998621  1112211                013467764   57778


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE-ecCCCCccHHHHHHHHHHhC
Q 019519           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNM-ISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv-~tNP~d~~t~~~~~~~~~sg  163 (340)
                      ++++||++|++.+.|...+.+      -+...+...++.|.++. ++.++++ .|=|.+..-.++..+++..+
T Consensus        73 ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~  139 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS  139 (185)
T ss_dssp             HHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred             hhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence            899999999999888655331      23444555555565554 3444333 36677766644444445444

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.43  E-value=1.3e-06  Score=81.71  Aligned_cols=117  Identities=17%  Similarity=0.242  Sum_probs=80.1

Q ss_pred             EEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEE-ecCCccccccCCCCEEEEcCCCCCCC
Q 019519           32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVPRKP  110 (340)
Q Consensus        32 ~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVi~~ag~~~~~  110 (340)
                      .|+||+||+|++++..|+..+...+|..+|+........++........+... +...++.++++++|+||++|+.....
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            38999999999999999998866699999987622221122222211012221 12356778999999999998753333


Q ss_pred             C-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 019519          111 G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (340)
Q Consensus       111 g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (340)
                      + .....+...|+...+.+.+...+..-+.  +++|..+++
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkr--lVytSS~~v  119 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVKR--LVYTSSISV  119 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCCE--EEEEcCcce
Confidence            3 4567788999999999999999875443  445555543

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.42  E-value=2.7e-06  Score=79.92  Aligned_cols=119  Identities=14%  Similarity=0.250  Sum_probs=78.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHH-H-------Hh---cCCC---------CceEEEEec
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAA-D-------VG---HINT---------RSEVAGYMG   86 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~-d-------l~---~~~~---------~~~v~~~~~   86 (340)
                      ..||+|||+ |.+|..++..++..++  +|+++|.++. ...+. .       +.   +...         ..++...  
T Consensus         3 i~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~--   77 (291)
T PRK06035          3 IKVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS--   77 (291)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee--
Confidence            459999998 9999999999999887  9999999861 11110 1       11   1110         1134332  


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCcc-HHHHHHHHHHhCC
Q 019519           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNST-VPIAAEVFKKAGT  164 (340)
Q Consensus        87 ~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~-t~~~~~~~~~sg~  164 (340)
                       +|+ +++++||+||.+.              ..+.++.+++.+.++++++ ++++  +||...+. +.++    ...  
T Consensus        78 -~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~la----~~~--  133 (291)
T PRK06035         78 -TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEIA----TAL--  133 (291)
T ss_pred             -CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHHH----hhc--
Confidence             455 6789999999986              2456677888888888875 5544  57766643 3332    222  


Q ss_pred             CCCCceEeccc
Q 019519          165 YNEKKLFGVTT  175 (340)
Q Consensus       165 ~~~~kviG~~~  175 (340)
                      -.+.|++|+..
T Consensus       134 ~~~~r~ig~hf  144 (291)
T PRK06035        134 ERKDRFIGMHW  144 (291)
T ss_pred             CCcccEEEEec
Confidence            23678888853

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.37  E-value=5.2e-06  Score=82.64  Aligned_cols=121  Identities=13%  Similarity=0.005  Sum_probs=79.7

Q ss_pred             ccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccC
Q 019519           18 ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        18 ~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~   95 (340)
                      ...|+....+.|||.|+||+|+||++++..|+..++  +|+.+|...  .......  +.. ..+++.... +-+..++.
T Consensus       109 ~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~--~~~-~~~~~~i~~-D~~~~~l~  182 (442)
T PLN02206        109 GKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMH--HFS-NPNFELIRH-DVVEPILL  182 (442)
T ss_pred             CcCccccccCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhh--hcc-CCceEEEEC-CccChhhc
Confidence            334555555678999999999999999999999887  899988643  1111111  111 122333221 11235578


Q ss_pred             CCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ++|+||++|+...  .........+..|+....++++.+++..  ..+|++|.
T Consensus       183 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS  233 (442)
T PLN02206        183 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTST  233 (442)
T ss_pred             CCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECC
Confidence            9999999997542  1223456778899999999999998775  35555543

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.33  E-value=4.8e-07  Score=84.38  Aligned_cols=114  Identities=19%  Similarity=0.232  Sum_probs=71.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEE----EEec----CCccccccC--CCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA----GYMG----NDQLGQALE--DSD   98 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~----~~~~----~~d~~~al~--~aD   98 (340)
                      |.|+||+|++|+.++..|+..++ .+|+++|.++  ......++.......++.    ...+    ...+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            68999999999999999998764 5899999998  334444553111111121    1111    112345667  999


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        99 iVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|+++|....-+  .....+.+..|+-..+++++...+++.+-.|.+.|
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~IST  128 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFIST  128 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence            999999764433  23567788999999999999999998776666654

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.31  E-value=1e-05  Score=75.97  Aligned_cols=122  Identities=20%  Similarity=0.352  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHH----HHh----cCCC--------CceEEEEecCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA----DVG----HINT--------RSEVAGYMGND   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~----dl~----~~~~--------~~~v~~~~~~~   88 (340)
                      +.+||+|||+ |.+|..++..++..++  +|+++|.++.  .....    .+.    ....        ..+++..   +
T Consensus         3 ~~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~   76 (292)
T PRK07530          3 AIKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA---T   76 (292)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee---C
Confidence            3469999998 9999999999999887  9999999861  11111    111    1110        1234442   4


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc-HHHHHHHHHHhCCCC
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNST-VPIAAEVFKKAGTYN  166 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~-t~~~~~~~~~sg~~~  166 (340)
                      |+ +++++||+||++.  |            .+..+.+.+.+.+.+++ |++++  +||.+.+- +.+.    +..  ..
T Consensus        77 ~~-~~~~~aD~Vieav--p------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~la----~~~--~~  133 (292)
T PRK07530         77 DL-EDLADCDLVIEAA--T------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRLA----SAT--DR  133 (292)
T ss_pred             CH-HHhcCCCEEEEcC--c------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----hhc--CC
Confidence            55 5689999999985  2            33455556666777777 46654  46766643 3332    222  23


Q ss_pred             CCceEeccchh
Q 019519          167 EKKLFGVTTLD  177 (340)
Q Consensus       167 ~~kviG~~~ld  177 (340)
                      +.+++|+..++
T Consensus       134 ~~r~~g~h~~~  144 (292)
T PRK07530        134 PERFIGIHFMN  144 (292)
T ss_pred             cccEEEeeccC
Confidence            56788875443

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.30  E-value=1.6e-06  Score=74.07  Aligned_cols=93  Identities=27%  Similarity=0.401  Sum_probs=63.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC--------CCceEEEEecCCccccccCCCCEEE
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------TRSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~--------~~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      ||+|+|| |..|.++|..|...+.  +|.|++.++.....+.-.+..        .+..+..+   +|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t---~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKAT---TDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEE---SSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccc---cCHHHHhCcccEEE
Confidence            8999998 9999999999999997  999999875222222222221        12345543   68889999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEe
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI  144 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~  144 (340)
                      ++.  |              ....+++++.+..+-+ +..++++
T Consensus        75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred             ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEe
Confidence            984  2              4556788888888774 4455443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.29  E-value=6.8e-06  Score=82.94  Aligned_cols=122  Identities=24%  Similarity=0.340  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHH---H---HHHhcCC---------CCceEEEEecCCc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV---A---ADVGHIN---------TRSEVAGYMGNDQ   89 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~---~---~dl~~~~---------~~~~v~~~~~~~d   89 (340)
                      ..||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+.   .   ..+....         ...+++..   +|
T Consensus         5 ~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~---~~   78 (503)
T TIGR02279         5 VVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV---TD   78 (503)
T ss_pred             ccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe---CC
Confidence            459999998 9999999999999998  9999999861   110   0   0111111         11245543   46


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc-cHHHHHHHHHHhCCCCCC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-TVPIAAEVFKKAGTYNEK  168 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~-~t~~~~~~~~~sg~~~~~  168 (340)
                      + +++++||+||.+.              .++..+.+.+...+.++++...+ +.||.+.+ .+.++    ...  -.|.
T Consensus        79 ~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i~~iA----~~~--~~p~  136 (503)
T TIGR02279        79 L-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLSITAIA----AGL--ARPE  136 (503)
T ss_pred             H-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCHHHHH----Hhc--Cccc
Confidence            5 5689999999985              36778888888889999864433 48888875 34343    222  2356


Q ss_pred             ceEeccchh
Q 019519          169 KLFGVTTLD  177 (340)
Q Consensus       169 kviG~~~ld  177 (340)
                      +++|++.++
T Consensus       137 r~~G~HFf~  145 (503)
T TIGR02279       137 RVAGLHFFN  145 (503)
T ss_pred             ceEEEeccC
Confidence            888886444

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02427 UDP-apiose/xylose synthase

Probab=98.29  E-value=7e-06  Score=80.02  Aligned_cols=114  Identities=14%  Similarity=0.049  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcC---CCCceEEEEe----cCCccccccCCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHI---NTRSEVAGYM----GNDQLGQALEDSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~---~~~~~v~~~~----~~~d~~~al~~aD   98 (340)
                      ++|||.|+||+||+|++++..|+.. +.  +|+.+|.+....  ..+...   ....+++...    +..++.++++++|
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~--~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKI--KHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhh--hhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            4679999999999999999999887 45  899998654211  111111   0111233321    1123456788999


Q ss_pred             EEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           99 VVIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        99 iVi~~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +||++|+....  ......+.+..|+.....+++..++.+  ..+|.+|.
T Consensus        89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            99999986422  112334556678888888888887665  35555553

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.26  E-value=8.3e-06  Score=82.46  Aligned_cols=120  Identities=20%  Similarity=0.291  Sum_probs=81.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HH--HHHH----HhcCC---------CCceEEEEecCCcc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAAD----VGHIN---------TRSEVAGYMGNDQL   90 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~--~~~d----l~~~~---------~~~~v~~~~~~~d~   90 (340)
                      .||+|||+ |.+|+.+|..++..|+  +|+++|.++.   .+  ...+    +....         ...+++..   +++
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~---~~~   81 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV---EAL   81 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---CCH
Confidence            58999998 9999999999999998  9999999861   11  0111    11111         11245553   455


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-cHHHHHHHHHHhCCCCCC
Q 019519           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTYNEK  168 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~-~t~~~~~~~~~sg~~~~~  168 (340)
                       +++++||+||.+.              .++..+.+.+...+++.+ |++++  +||.+.+ .+.++    ...  -.|+
T Consensus        82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~la----~~~--~~p~  138 (507)
T PRK08268         82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAIA----AAL--KHPE  138 (507)
T ss_pred             -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhc--CCcc
Confidence             5688999999985              367788888888899998 45544  6777664 34332    222  3467


Q ss_pred             ceEeccchh
Q 019519          169 KLFGVTTLD  177 (340)
Q Consensus       169 kviG~~~ld  177 (340)
                      |++|+..++
T Consensus       139 r~~G~hff~  147 (507)
T PRK08268        139 RVAGLHFFN  147 (507)
T ss_pred             cEEEEeecC
Confidence            888986444

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.25  E-value=2.1e-05  Score=75.09  Aligned_cols=174  Identities=13%  Similarity=0.076  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEe----cCCccccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVi~  102 (340)
                      +++|.|+||+|++|++++..|+..++  +|++++.+. ......++.......++....    +..++.+.++++|+||+
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            46999999999999999999998887  887776554 222111121111001232222    11234566789999999


Q ss_pred             cCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc-----------cHHHH--HHHHHHhCCCCCC
Q 019519          103 PAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-----------TVPIA--AEVFKKAGTYNEK  168 (340)
Q Consensus       103 ~ag~~~~~g~~r-~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~-----------~t~~~--~~~~~~sg~~~~~  168 (340)
                      +|+.......+. .+++..|+.....+.+.+.+...-..+|++|.-...           +.+-.  ..-..... .+|.
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~-~~p~  165 (338)
T PLN00198         87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSE-KPPT  165 (338)
T ss_pred             eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhc-CCcc
Confidence            998532222222 346688999999999999876422344444332100           00000  00000011 2344


Q ss_pred             ceEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       169 kviG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      ..+|.+.+...++...+++..|++..-++ ..+.|..
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            45666544444444555666676655454 2466764

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.25  E-value=2.3e-05  Score=78.37  Aligned_cols=118  Identities=18%  Similarity=0.243  Sum_probs=86.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecC----CccccccCC--CC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~----~d~~~al~~--aD   98 (340)
                      ..+.|.|+||+|++|+.++-.++..+. .+|+++|.+|  ......+|.+.....++..+.++    .-++.++++  .|
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            457999999999999999998887753 6999999998  33444455543212233333321    234567888  99


Q ss_pred             EEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           99 VVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        99 iVi~~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|+++|...+-|-.  ...+-...|+-..+++++...+++-+..+++.|
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iST  376 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST  376 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEec
Confidence            99999987666643  456778899999999999999888776666554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.22  E-value=2.2e-05  Score=78.60  Aligned_cols=123  Identities=16%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHH-------------HHhcCCCCceEEEEecCCcccccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-------------DVGHINTRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~-------------dl~~~~~~~~v~~~~~~~d~~~al   94 (340)
                      +|||+|+|+ |.||..++..|+..+...+++.+|+++.+-..+             ++.......++..+   +|+.+++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t---~~~~~~i   76 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS---TDVEKHV   76 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE---cCHHHHH
Confidence            589999998 999999999999876434899999986221111             11000001134443   5667789


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHH
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIA  155 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~t~~~  155 (340)
                      ++||++|++.+.|...+-...+ -.-++..+.+.++.|.++.+++.+|+.  |-|.++.-.+.
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~  138 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE  138 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHH
Confidence            9999999999988653210000 012455567777777777654444433  77777655443

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.20  E-value=9.7e-06  Score=76.06  Aligned_cols=119  Identities=17%  Similarity=0.237  Sum_probs=73.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHH---HHH-----hcCCC--------CceEEEEecCCcc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVA---ADV-----GHINT--------RSEVAGYMGNDQL   90 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~---~dl-----~~~~~--------~~~v~~~~~~~d~   90 (340)
                      .||+|||+ |.+|..+|..|+..++  +|+++|+++.  ....   .++     .....        ..++...   +++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS---LDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---CcH
Confidence            48999998 9999999999998887  8999999861  1110   011     01000        1134432   466


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 019519           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~k  169 (340)
                      ++++++||+||.+..              .+..+.+.+...+.++++ ++++  ++|...+-...+   ....  -.+.+
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~~~~~l---~~~~--~~~~r  134 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTMSPTEI---ASFT--KRPER  134 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHH---Hhhc--CCccc
Confidence            788999999999852              334555666666777775 5543  566655322222   1222  23456


Q ss_pred             eEecc
Q 019519          170 LFGVT  174 (340)
Q Consensus       170 viG~~  174 (340)
                      ++|+.
T Consensus       135 ~~g~h  139 (288)
T PRK09260        135 VIAMH  139 (288)
T ss_pred             EEEEe
Confidence            77764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.19  E-value=2e-05  Score=75.72  Aligned_cols=169  Identities=15%  Similarity=0.057  Sum_probs=99.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHh-cC--CCCceEEEEec-C---CccccccCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG-HI--NTRSEVAGYMG-N---DQLGQALED   96 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~-~~--~~~~~v~~~~~-~---~d~~~al~~   96 (340)
                      .+++||.|+||+|++|++++..|+..+.  +|+.+|....  .....++. ..  ....++....+ -   .++.+.+++
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~   90 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN   90 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence            4568999999999999999999998886  8999997541  11111111 00  00112333221 1   123445789


Q ss_pred             CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC------CCccHHHHHHHHHHhCCCCCC
Q 019519           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VNSTVPIAAEVFKKAGTYNEK  168 (340)
Q Consensus        97 aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP------~d~~t~~~~~~~~~sg~~~~~  168 (340)
                      +|+||++|+....+  .+........|+....++.+.+++...+ .++.+|..      .+..  .    ..... ..|.
T Consensus        91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~--~----~e~~~-~~p~  162 (348)
T PRK15181         91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLP--K----IEERI-GRPL  162 (348)
T ss_pred             CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCC--C----CCCCC-CCCC
Confidence            99999999864322  2345567889999999999999887544 34434321      1100  0    01111 2344


Q ss_pred             ceEeccchhHHHHHHHHHHHcCCCCCCCce-eEEEec
Q 019519          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (340)
Q Consensus       169 kviG~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (340)
                      ..+|.+.+...++....++..+++...++. .++|.+
T Consensus       163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~  199 (348)
T PRK15181        163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR  199 (348)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence            567776544444444455666777666653 467764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.19  E-value=9.7e-06  Score=73.05  Aligned_cols=100  Identities=23%  Similarity=0.222  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcC----CCCceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHI----NTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|||++|.+|++++..|...+.  +|.++|.++  ......++.+.    .....+..    ++..++++++|+||+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~----~~~~ea~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG----ADNAEAAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE----eChHHHHhcCCEEEE
Confidence            6899998449999999999998886  899999875  22222222211    11112222    123578899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (340)
                      +.-                ...+.++++.+...-++.++|-++||.+.
T Consensus        75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            852                12223333444433344678889999864

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.18  E-value=1.9e-05  Score=74.66  Aligned_cols=120  Identities=14%  Similarity=0.078  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHH--HHHHHhcCCCCceEEEEe----cCCccccccCCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPG--VAADVGHINTRSEVAGYM----GNDQLGQALEDSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aD   98 (340)
                      ..++|+|+||+|++|+.++..|+++|+  +|+=-=+++  .+.  ...+|....  .++..+.    ..+.+.+|+++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            357999999999999999999999998  554333332  222  344554332  1222221    2245678999999


Q ss_pred             EEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 019519           99 VVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (340)
Q Consensus        99 iVi~~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  151 (340)
                      .|+++|....-... .-.+++.-+++....+.+.+.+.. ...=+++|+....+
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv  133 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAV  133 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHh
Confidence            99999975432222 244788899999999999999887 44445577665433

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.18  E-value=2.5e-05  Score=74.08  Aligned_cols=121  Identities=20%  Similarity=0.271  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHH--------HHhcCCC---------CceEEEEecCCc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAA--------DVGHINT---------RSEVAGYMGNDQ   89 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~--------dl~~~~~---------~~~v~~~~~~~d   89 (340)
                      ++||+|||+ |.+|++++..|+..|+  +|+++|.++.. ....        .+.....         ..+++..   +|
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~---~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT---DS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE---Cc
Confidence            469999997 9999999999999988  99999998611 1100        1211110         1234443   56


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~k  169 (340)
                      +.+++++||+|+.+.  |            .+....+.+...+.+.+++..++ .||.......-+   .....  .+.+
T Consensus        76 ~~~a~~~ad~Vi~av--p------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~~~~l---a~~~~--~~~~  135 (308)
T PRK06129         76 LADAVADADYVQESA--P------------ENLELKRALFAELDALAPPHAIL-ASSTSALLASAF---TEHLA--GRER  135 (308)
T ss_pred             HHHhhCCCCEEEECC--c------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCCCHHHH---HHhcC--Cccc
Confidence            777899999999985  2            23445555666677777654444 466654333222   22221  2456


Q ss_pred             eEecc
Q 019519          170 LFGVT  174 (340)
Q Consensus       170 viG~~  174 (340)
                      ++|.+
T Consensus       136 ~~~~h  140 (308)
T PRK06129        136 CLVAH  140 (308)
T ss_pred             EEEEe
Confidence            77765

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.17  E-value=1.7e-05  Score=75.08  Aligned_cols=120  Identities=18%  Similarity=0.320  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHh---cC--------CCCceEEEEecCCcccccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG---HI--------NTRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~---~~--------~~~~~v~~~~~~~d~~~al   94 (340)
                      .+||+|||+ |.+|..++..|+..++  +|+++|.++.  ......+.   ..        ....++...   +|+.+++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME---AGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe---CCHHHHh
Confidence            359999998 9999999999998887  8999998761  11111110   00        001123332   4566778


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      ++||+||++.  |            .......++...+..+++ ++++  +||...+-..-+   ....+  .+.+++|+
T Consensus        78 ~~aDlVi~av--~------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~~l---~~~~~--~~~~~ig~  136 (311)
T PRK06130         78 SGADLVIEAV--P------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPITAI---AQAVT--RPERFVGT  136 (311)
T ss_pred             ccCCEEEEec--c------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHHHH---HhhcC--CcccEEEE
Confidence            9999999985  1            233455556666776664 4443  566665433222   22221  24678887


Q ss_pred             c
Q 019519          174 T  174 (340)
Q Consensus       174 ~  174 (340)
                      .
T Consensus       137 h  137 (311)
T PRK06130        137 H  137 (311)
T ss_pred             c
Confidence            4

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.17  E-value=3e-05  Score=68.71  Aligned_cols=93  Identities=24%  Similarity=0.334  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH---HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ||+++|+|+ |++|+.++..+...++  |+.+-..+..+   +.+..+.     +.++..    ..++|.+.||+||++.
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~-----~~i~~~----~~~dA~~~aDVVvLAV   68 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALG-----PLITGG----SNEDAAALADVVVLAV   68 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhc-----cccccC----ChHHHHhcCCEEEEec
Confidence            679999997 9999999999999998  88888666532   2222222     345543    2368999999999984


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                        |          +.....+    .++++..-.+-++|-.|||.
T Consensus        69 --P----------~~a~~~v----~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          69 --P----------FEAIPDV----LAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             --c----------HHHHHhH----HHHHHHHhCCeEEEecCCCc
Confidence              4          2333444    44444433367888899995

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.13  E-value=2.2e-05  Score=79.29  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHH-------HHh---cCC--CCceEEEEecCCcccccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAA-------DVG---HIN--TRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~-------dl~---~~~--~~~~v~~~~~~~d~~~al   94 (340)
                      +||+|||+ |.+|+.++..|+..|+  +|.++|.++..  ....       .+.   ...  ...++...   +|+.+++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~---~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC---ASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee---CCHHHHh
Confidence            69999998 9999999999999988  99999998621  1100       011   000  01124432   4667889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t  152 (340)
                      ++||+|+.+.              ..+..+.+.+...+.+++++.. |+.||.+++..
T Consensus        79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            9999999985              2445666777777888876443 34788777543

>PLN02650 dihydroflavonol-4-reductase

Probab=98.13  E-value=4.9e-05  Score=73.02  Aligned_cols=115  Identities=13%  Similarity=0.057  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcC-CCCceEEEEe----cCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-NTRSEVAGYM----GNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~-~~~~~v~~~~----~~~d~~~al~~aDiVi~  102 (340)
                      ++|.|+||+|++|++++..|+..++  +|++++.+... ....++... ....++....    ....+.++++++|+||+
T Consensus         6 k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH   83 (351)
T PLN02650          6 ETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH   83 (351)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence            5999999999999999999999887  88888765411 111122111 1111222221    11234567789999999


Q ss_pred             cCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          103 PAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       103 ~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|+........ ....+..|+.....+++.+.+.+.-..+|++|
T Consensus        84 ~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S  127 (351)
T PLN02650         84 VATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS  127 (351)
T ss_pred             eCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            98753211112 23567889999999999998765323555554

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.12  E-value=2.3e-05  Score=73.71  Aligned_cols=119  Identities=22%  Similarity=0.307  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHH--------HHHhcCCC---------CceEEEEecCCc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVA--------ADVGHINT---------RSEVAGYMGNDQ   89 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~--------~dl~~~~~---------~~~v~~~~~~~d   89 (340)
                      ..||+|||+ |.+|+.++..++..++  +|+++|.++.. ...        .++.+...         ...+...   ++
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~   77 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT---TN   77 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee---CC
Confidence            358999998 9999999999998887  99999987611 110        11221110         0123332   34


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-cHHHHHHHHHHhCCCCC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-~t~~~~~~~~~sg~~~~  167 (340)
                      + +++++||+||.+.              .++..+...+...+.++++ ++++  +||-..+ ++.+    .+..+  .+
T Consensus        78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~~~~l----~~~~~--~~  134 (295)
T PLN02545         78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSISITRL----ASATQ--RP  134 (295)
T ss_pred             H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcC--CC
Confidence            4 6789999999985              3456667777777887764 5543  5777664 3332    22222  34


Q ss_pred             CceEeccc
Q 019519          168 KKLFGVTT  175 (340)
Q Consensus       168 ~kviG~~~  175 (340)
                      .+++|++.
T Consensus       135 ~r~~g~h~  142 (295)
T PLN02545        135 QQVIGMHF  142 (295)
T ss_pred             cceEEEec
Confidence            67878743

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.12  E-value=4.6e-05  Score=71.92  Aligned_cols=114  Identities=13%  Similarity=0.101  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCC-CCceEEEEe----cCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHIN-TRSEVAGYM----GNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~-~~~~v~~~~----~~~d~~~al~~aDiVi  101 (340)
                      .+||.|+||+|++|++++..|+..|+  +|++++.+.. ......+.... ...+++...    ...++.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            36999999999999999999999887  8888877652 11111221110 011222221    1133556788999999


Q ss_pred             EcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEe
Q 019519          102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMI  144 (340)
Q Consensus       102 ~~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~  144 (340)
                      ++|+........ ..+.+..|+.....+++.+.+. ... .+|++
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~  125 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT  125 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence            999754221122 2367788999999999998876 333 44433

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.07  E-value=2.7e-05  Score=74.73  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-----CccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-----~d~~~al~~aDiVi  101 (340)
                      ||||.|+||+|++|++++..|+.. ++  +|+.+|.....  ..++...   ..+......     .++.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            479999999999999999999875 55  89999864311  1122211   123322210     11234568999999


Q ss_pred             EcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          102 IPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       102 ~~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ++|+...  .........+..|+....++++.+++..  ..+|.+|.
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS  118 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  118 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence            9987532  2233445566778888899999888764  35555543

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.04  E-value=4.5e-05  Score=72.70  Aligned_cols=113  Identities=14%  Similarity=0.209  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH--HHHHHhcCCCCceEEEEe----cCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVi  101 (340)
                      .++|.|+||+|++|++++..|+..+...+|+++|.+....  ...++..    .++....    +..++.++++++|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            4689999999999999999998775334899998765221  1112211    1222221    1123456678999999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++||....+  ..+..+.+..|+.....+.+.+.+.+.. .+|++|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999864322  2345677889999999999999876543 455554

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.02  E-value=3.1e-05  Score=73.41  Aligned_cols=108  Identities=12%  Similarity=0.006  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEE-ecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      |||.|+||+|++|++++..|...++  +|+.++.+....  ..+.+... .-+... ....++.++++++|+||++++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v-~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGA-ELVYGDLSLPETLPPSFKGVTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCC-EEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence            5999999999999999999998887  899998764221  11221111 011111 11234567899999999987532


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ..   ...++...|......+++.+++.+-+ .+|.+|
T Consensus        76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         76 PS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            11   12234566888888999988887655 444444

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.02  E-value=6.6e-05  Score=78.50  Aligned_cols=168  Identities=14%  Similarity=0.092  Sum_probs=99.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CCc----cccccCCCC
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ----LGQALEDSD   98 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~al~~aD   98 (340)
                      -+++|||.|+||+||+|++++..|+.. ++  +|+.+|.+.....  ++...   ..++...+ -.|    +.++++++|
T Consensus       312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~---~~~~~~~gDl~d~~~~l~~~l~~~D  384 (660)
T PRK08125        312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGH---PRFHFVEGDISIHSEWIEYHIKKCD  384 (660)
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCC---CceEEEeccccCcHHHHHHHhcCCC
Confidence            366789999999999999999999874 56  9999997652111  11111   12222211 111    245678999


Q ss_pred             EEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC------C-ccHHHHHHHHH-HhCCC-CC
Q 019519           99 VVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV------N-STVPIAAEVFK-KAGTY-NE  167 (340)
Q Consensus        99 iVi~~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~------d-~~t~~~~~~~~-~sg~~-~~  167 (340)
                      +||++|+...  .......+.+..|+....++.+.++++. . .+|.+|...      + .+++-.   .. ..+.. ++
T Consensus       385 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~E~~---~~~~~~p~~~p  459 (660)
T PRK08125        385 VVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFDEDT---SNLIVGPINKQ  459 (660)
T ss_pred             EEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcCccc---cccccCCCCCC
Confidence            9999988543  2233456677889999999999999875 3 454444321      1 111000   00 00001 12


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCce-eEEEec
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (340)
                      ...+|.+.+...++....++..+++..-++. .++|.+
T Consensus       460 ~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             ccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence            2367776544455555566777776666664 366754

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.96  E-value=7.9e-05  Score=75.70  Aligned_cols=137  Identities=22%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             hhhhhhhccCccccCCCCCC----------CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHh
Q 019519            6 LRSVKTLAKPAGARGYSSES----------VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG   73 (340)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~----------~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~   73 (340)
                      +|+.--.++.-|..+|++..          +....|.|+||+|++|+.++..|+..|+  +|++++.+..  .....++.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~  125 (576)
T PLN03209         48 LRSLDIKAQASGATKFSSAAIEAIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVK  125 (576)
T ss_pred             ccccchhhccccchhhhhhhhhccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhh
Confidence            44444445555555544433          2346799999999999999999998887  8999988752  22222221


Q ss_pred             c-----CC--CCceEEEEe----cCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 019519           74 H-----IN--TRSEVAGYM----GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (340)
Q Consensus        74 ~-----~~--~~~~v~~~~----~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~vi  142 (340)
                      +     ..  ...++....    ...++.+++.++|+||+++|............+..|......+++.+.+.+-. .||
T Consensus       126 ~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV  204 (576)
T PLN03209        126 QMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFI  204 (576)
T ss_pred             hhccccccccccCceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEE
Confidence            1     00  001222221    11244566899999999988654321222234556788888888888776543 455


Q ss_pred             Eec
Q 019519          143 MIS  145 (340)
Q Consensus       143 v~t  145 (340)
                      ++|
T Consensus       205 ~VS  207 (576)
T PLN03209        205 LVT  207 (576)
T ss_pred             EEc
Confidence            454

>PLN02214 cinnamoyl-CoA reductase

Probab=97.95  E-value=0.00014  Score=69.91  Aligned_cols=110  Identities=15%  Similarity=0.054  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHH-HHHHhcCCCCceEEEEe----cCCccccccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGV-AADVGHINTRSEVAGYM----GNDQLGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~-~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiV  100 (340)
                      +++|.|+||+|++|++++..|+..++  +|+.++.+..  ... ...+...  ..++....    ...++.++++++|+|
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            46899999999999999999999887  8888876542  111 1122211  11222221    123455678899999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |++|+...   ....+.+..|+.....+.+.+.+...+ .+|++|
T Consensus        86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~S  126 (342)
T PLN02214         86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITS  126 (342)
T ss_pred             EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEec
Confidence            99998542   234566788999999999999877544 344443

>PLN02572 UDP-sulfoquinovose synthase

Probab=97.93  E-value=7.6e-05  Score=74.35  Aligned_cols=175  Identities=17%  Similarity=0.178  Sum_probs=97.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HH------------HHHHH---hcCCCCceEEEEec--
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG------------VAADV---GHINTRSEVAGYMG--   86 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~------------~~~dl---~~~~~~~~v~~~~~--   86 (340)
                      +++||.|+||+|++|++++..|+..|+  +|+++|....   ..            ....+   .+.. ..+++....  
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl  122 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI  122 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence            467999999999999999999999887  8999984320   00            00011   0000 012222211  


Q ss_pred             --CCccccccC--CCCEEEEcCCCCCCC-C-CCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec------CCCCcc
Q 019519           87 --NDQLGQALE--DSDVVIIPAGVPRKP-G-MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS------NPVNST  151 (340)
Q Consensus        87 --~~d~~~al~--~aDiVi~~ag~~~~~-g-~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t------NP~d~~  151 (340)
                        ..++.++++  ++|+||++|+....+ . .+.   ...+..|+.....+++.+++++.+..++.+|      +|-..+
T Consensus       123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~  202 (442)
T PLN02572        123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI  202 (442)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence              112334455  489999998653221 1 111   2345679999999999999887655555443      221111


Q ss_pred             HHH-HHH--HH-HHh--CCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          152 VPI-AAE--VF-KKA--GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       152 t~~-~~~--~~-~~s--g~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      .+- +.+  .. ..+  ....|...+|.+.+....+....++..|++.--++ ..++|.+
T Consensus       203 ~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~  262 (442)
T PLN02572        203 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR  262 (442)
T ss_pred             cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence            000 000  00 000  01334567888755545556666777787765555 3467765

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=97.92  E-value=0.00015  Score=69.61  Aligned_cols=168  Identities=14%  Similarity=0.089  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe----cCCccccccC--CCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALE--DSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~--~aDiVi  101 (340)
                      |+||.|+||+|++|++++..|...+. ..++++|..+.......+.+.....++....    +..++.++++  ++|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            45999999999999999999998875 2466777543211111222111001222111    1123344555  389999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCCC---------CccHHHHHHHHHHh
Q 019519          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPV---------NSTVPIAAEVFKKA  162 (340)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP~---------d~~t~~~~~~~~~s  162 (340)
                      ++||.....  .......+..|+.....+++.+.+++       +. ..++.+|...         +.++       ...
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~-------E~~  152 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT-------ETT  152 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcC-------CCC
Confidence            999864321  12245677889999999999988652       11 2455444321         0111       011


Q ss_pred             CCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       163 g~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      . ..+...+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus       153 ~-~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~  194 (355)
T PRK10217        153 P-YAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY  194 (355)
T ss_pred             C-CCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence            1 334456676655555566666777777655554 3466755

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.91  E-value=7.6e-05  Score=70.56  Aligned_cols=104  Identities=21%  Similarity=0.369  Sum_probs=72.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHh--cCC--------CCceEEEEecCCccccccCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG--HIN--------TRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~--~~~--------~~~~v~~~~~~~d~~~al~~a   97 (340)
                      ++||+|+|+ |.=|.++|..|...++  +++|+..++  ..+.++.  |..        .++.+..   ++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence            479999998 9999999999999987  999999875  2222332  221        2445554   37899999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-----CCCCccHHHH
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-----NPVNSTVPIA  155 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t-----NP~d~~t~~~  155 (340)
                      |+|++..  |              ...++++++++..+- ++..++.+|     ++...++.++
T Consensus        73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii  120 (329)
T COG0240          73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEII  120 (329)
T ss_pred             CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHH
Confidence            9999984  3              355666666665443 577777664     2333455554

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=97.91  E-value=0.00026  Score=65.84  Aligned_cols=155  Identities=15%  Similarity=0.043  Sum_probs=102.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEec-CCcccccc--CCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMG-NDQLGQAL--EDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~-~~d~~~al--~~aDiVi~~a  104 (340)
                      |+|.|+|++|++||+.+-.|+..|+  +++.+|... -...+.+-...   ..+.+... ..-+.+.|  ..-|.||+.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~---~f~~gDi~D~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQF---KFYEGDLLDRALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccC---ceEEeccccHHHHHHHHHhcCCCEEEECc
Confidence            6899999999999999999999998  999999865 12222211111   12222110 00111222  3789999988


Q ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-----ecCCCC-ccHHHHHHHHHHhCCCCCCceEeccch
Q 019519          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-----ISNPVN-STVPIAAEVFKKAGTYNEKKLFGVTTL  176 (340)
Q Consensus       105 g~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-----~tNP~d-~~t~~~~~~~~~sg~~~~~kviG~~~l  176 (340)
                      |...-.  -+..+.++..|+--...+.+.|.+++.+-+|+-     +.+|.. .+++       ... ..|.+-+|-+.|
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E-------~~~-~~p~NPYG~sKl  147 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISE-------TSP-LAPINPYGRSKL  147 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCC-------CCC-CCCCCcchhHHH
Confidence            754321  134678999999999999999999998766543     345544 2322       223 567889999988


Q ss_pred             hHHHHHHHHHHHcCCCCCCC
Q 019519          177 DVVRAKTFYAGKANVNVAEV  196 (340)
Q Consensus       177 d~~R~~~~la~~l~v~~~~v  196 (340)
                      ...+....+++..+....-.
T Consensus       148 m~E~iL~d~~~a~~~~~v~L  167 (329)
T COG1087         148 MSEEILRDAAKANPFKVVIL  167 (329)
T ss_pred             HHHHHHHHHHHhCCCcEEEE
Confidence            88788888888777544333

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=97.89  E-value=9.9e-05  Score=69.56  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      |||.|+||+|++|++++..|+..++  +|+++|.+.....  ++.+... .-+.... ...++.++++++|+||++++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRR--NLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCcccc--ccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            5899999999999999999998887  8999997652111  1111111 0112111 1123456778999999998754


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      .............|+.....+++.+.+.+-+ .+|+.|.
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  113 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSS  113 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEec
Confidence            3233445667788999999999988876533 4444443

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=97.87  E-value=0.00017  Score=69.20  Aligned_cols=117  Identities=19%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccccccCC--CCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLGQALED--SDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~--aDiVi~  102 (340)
                      .++|.|+||+|++|++++..|+..+.  +|+.+|.+..  ......+........+.... ...++.+.+++  .|+||+
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            46999999999999999999998887  8998987652  11111121111000111110 11223344554  599999


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +|+.+...  .......+..|+.....+++.+.+.+....+|++|.
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS  127 (349)
T TIGR02622        82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS  127 (349)
T ss_pred             CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            99854221  123456678899999999999887653335665554

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.86  E-value=0.00035  Score=66.19  Aligned_cols=116  Identities=13%  Similarity=0.078  Sum_probs=72.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhc-CCCCceEEEEe----cCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGH-INTRSEVAGYM----GNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~-~~~~~~v~~~~----~~~d~~~al~~aDiVi  101 (340)
                      .++|.|+||+|++|++++..|+..++  +|++++.+... .....+.. .....++....    ...++.++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            36999999999999999999999887  88877765421 11111111 11111232221    1123456678899999


Q ss_pred             EcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          102 IPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       102 ~~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++||..... . ......+..|+.....+.+.+.++.....+|++|
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S  128 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS  128 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence            999853211 1 1234566789999999999888754223455443

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=97.86  E-value=0.00012  Score=68.43  Aligned_cols=166  Identities=13%  Similarity=0.061  Sum_probs=93.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--H-HHHHHHhcCCCCceEEEEe----cCCccccccCC--CCEE
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GVAADVGHINTRSEVAGYM----GNDQLGQALED--SDVV  100 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~-~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~--aDiV  100 (340)
                      ||.|+||+|++|++++..|+..+...+|+++|....  . ....++...   ..+....    ...++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            689999999999999998887653338888886431  1 111122211   1222221    11234456666  8999


Q ss_pred             EEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CccHHHHHHHHHHhCCCCCCceEec
Q 019519          101 IIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       101 i~~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-----d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |++++....  .......++..|......+++.+.+...+..++.+|...     ......    ..... ..+...+|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~----~e~~~-~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF----TETTP-LAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc----CCCCC-CCCCCchHH
Confidence            999875321  122344567889999999999998775555566554311     000000    01111 334455666


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCce-eEEEe
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGG  203 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~  203 (340)
                      +.....++-..+++..+++..-++. .++|.
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~  183 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGP  183 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCC
Confidence            5443444444556666665444443 35564

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.85  E-value=0.00011  Score=69.83  Aligned_cols=101  Identities=21%  Similarity=0.357  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH--HHHHHhcCC------CCceEEEEecCCccccccCCCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHIN------TRSEVAGYMGNDQLGQALEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~--~~~dl~~~~------~~~~v~~~~~~~d~~~al~~aDi   99 (340)
                      ||||+|||+ |.+|+.++..|...++  ++.++|.++...  ...+..+..      ....+...   ++..+++++||+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT---TDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe---CCHHHHHhCCCE
Confidence            579999998 9999999999998887  899999875221  111100100      01123322   355567899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (340)
                      ||++...                ..+.++++.+..+. |+.+++..+|-++.
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            9998521                12344445555553 67788888876653

>PLN02778 3,5-epimerase/4-reductase

Probab=97.85  E-value=0.00029  Score=66.44  Aligned_cols=89  Identities=16%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .|||.|+||+|++|++++..|...++  ++++...+.  .....                  .++.+  .++|+||++|+
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~------------------~~l~~--~~~D~ViH~Aa   66 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLE------------------ADIDA--VKPTHVFNAAG   66 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHH------------------HHHHh--cCCCEEEECCc
Confidence            47999999999999999999998887  776542211  11111                  11111  26899999998


Q ss_pred             CCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019519          106 VPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPN  138 (340)
Q Consensus       106 ~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (340)
                      ....+.     ....+.+..|+.....+++.+++.+..
T Consensus        67 ~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         67 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             ccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            643222     245677889999999999999987543

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=97.82  E-value=0.00022  Score=68.32  Aligned_cols=170  Identities=14%  Similarity=0.093  Sum_probs=94.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEE---EEe-cCCccccccC--CCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA---GYM-GNDQLGQALE--DSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~---~~~-~~~d~~~al~--~aDiVi~  102 (340)
                      |||.|+||+|++|++++..|+..+. ..++.+|.....+....+.+.....++.   ... ...++.++++  ++|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999988774 2466677533111111111111011221   111 1123344554  4899999


Q ss_pred             cCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCCCCccHH--------------HHHHH
Q 019519          103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVP--------------IAAEV  158 (340)
Q Consensus       103 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP~d~~t~--------------~~~~~  158 (340)
                      +|+....  ......+.+..|+.....+++.+.++.       .. ..+|.+|-.. +...              ..   
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~---  155 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLF---  155 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCc---
Confidence            9986432  112345678899999999999998752       11 2444443321 0000              00   


Q ss_pred             HHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       159 ~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      -.... +.|...+|.+.....++-..+++..|++.-.++ ..++|.+
T Consensus       156 ~E~~~-~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~  201 (352)
T PRK10084        156 TETTA-YAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY  201 (352)
T ss_pred             cccCC-CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence            01112 345567777655555555556777777655554 3467765

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.00012  Score=68.55  Aligned_cols=166  Identities=16%  Similarity=0.093  Sum_probs=94.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEE-ecCCccccccCCC-CEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDS-DVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~a-DiVi~~ag~  106 (340)
                      |+|.|+||+|++|++++..|.+.++  +|+.+|.......... .+..   .+... +......+.++++ |.||++++.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~---~~~~d~~~~~~~~~~~~~~~d~vih~aa~   74 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVE---FVVLDLTDRDLVDELAKGVPDAVIHLAAQ   74 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccc---eeeecccchHHHHHHHhcCCCEEEEcccc
Confidence            3599999999999999999999887  9999997652111111 1111   01110 0001223455666 999999987


Q ss_pred             CCCCCCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH-H----HHHHHHHH-hCCCCCCceEeccchh
Q 019519          107 PRKPGMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-P----IAAEVFKK-AGTYNEKKLFGVTTLD  177 (340)
Q Consensus       107 ~~~~g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t-~----~~~~~~~~-sg~~~~~kviG~~~ld  177 (340)
                      ...++..+   .++...|+...+++++..++ +.-..++. +......- .    .+.   .. .. ..|...+|.+.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~-~ss~~~~~~~~~~~~~~---E~~~~-~~p~~~Yg~sK~~  148 (314)
T COG0451          75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVF-ASSVSVVYGDPPPLPID---EDLGP-PRPLNPYGVSKLA  148 (314)
T ss_pred             CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEE-eCCCceECCCCCCCCcc---cccCC-CCCCCHHHHHHHH
Confidence            65444332   35788999999999999998 33334443 32221110 0    110   11 12 2222246666544


Q ss_pred             HHHHHHHHHHHcCCCCCCCce-eEEEecCC
Q 019519          178 VVRAKTFYAGKANVNVAEVNV-PVVGGHAG  206 (340)
Q Consensus       178 ~~R~~~~la~~l~v~~~~v~~-~v~G~hg~  206 (340)
                      ..+.-...++..+++..-++. .++|....
T Consensus       149 ~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  178 (314)
T COG0451         149 AEQLLRAYARLYGLPVVILRPFNVYGPGDK  178 (314)
T ss_pred             HHHHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence            444444444455677666664 57776543

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=97.82  E-value=5.5e-05  Score=73.52  Aligned_cols=166  Identities=12%  Similarity=0.042  Sum_probs=93.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEE-EEe-cCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYM-GNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~-~~~-~~~d~~~al~~aDiVi~~ag  105 (340)
                      .|||.|+||+|+||++++..|...++  +|..+|..... .   +........+. ... ...++..+++++|+||++|+
T Consensus        21 ~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~---~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa   94 (370)
T PLN02695         21 KLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-H---MSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA   94 (370)
T ss_pred             CCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-c---cccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence            47999999999999999999998887  99999964311 0   00000000111 100 01123345679999999987


Q ss_pred             CCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CccH---HHHHHHHHHh--CCCCCCceEe
Q 019519          106 VPRKPG---MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTV---PIAAEVFKKA--GTYNEKKLFG  172 (340)
Q Consensus       106 ~~~~~g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-----d~~t---~~~~~~~~~s--g~~~~~kviG  172 (340)
                      .....+   ......+..|+.....+++.+++...+.+ |.+|...     ....   .+    ....  + +.|...+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~-V~~SS~~vYg~~~~~~~~~~~----~E~~~~p-~~p~s~Yg  168 (370)
T PLN02695         95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF-FYASSACIYPEFKQLETNVSL----KESDAWP-AEPQDAYG  168 (370)
T ss_pred             ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEE-EEeCchhhcCCccccCcCCCc----CcccCCC-CCCCCHHH
Confidence            432111   12233456899999999999987765544 4344321     0000   00    0011  2 34455666


Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCc-eeEEEecC
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (340)
                      .+.....++-...++..|++..-++ ..++|.++
T Consensus       169 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        169 LEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            6544444444445566677655554 34667653

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.82  E-value=0.00017  Score=71.21  Aligned_cols=113  Identities=25%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC----------------CCceEEEEecCCcccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------------TRSEVAGYMGNDQLGQ   92 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~~   92 (340)
                      |||+|||. |.+|..++..|+..|+  +|+.+|+++.+.  .+|....                ...++...   +++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v--~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~---~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKV--DKLNKGKSPIYEPGLDELLAKALAAGRLRAT---TDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHH--HHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE---CCHHH
Confidence            58999998 9999999999998888  899999975221  1222110                01224432   45667


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHH
Q 019519           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIA  155 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~  155 (340)
                      ++++||+||++...|.....      .-+...+.+.++.+.++. ++.+++.. |-|.+....+.
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~  131 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV  131 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence            89999999999877654321      123344444455555443 44444433 44555544443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.78  E-value=0.00025  Score=67.48  Aligned_cols=114  Identities=20%  Similarity=0.176  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC-CCce-EEEEe-cCCccccccC--CCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSE-VAGYM-GNDQLGQALE--DSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~-~~~~-v~~~~-~~~d~~~al~--~aDiVi  101 (340)
                      |||.|+||+|++|++++..|+..+.  +|+++|...  .......+.+.. .... +.... ....+.++++  ++|+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv   78 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI   78 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence            6899999999999999999998887  899888643  111111122111 0111 11111 1112233444  689999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++|+.....  .....+.+..|+.....+++.+++.... .++.+|
T Consensus        79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            998764321  1234567889999999999998876433 344444

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.78  E-value=0.00023  Score=68.43  Aligned_cols=113  Identities=13%  Similarity=0.047  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH--HHHHHhcCCCCceEEEEec----CCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~--~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVi  101 (340)
                      .|||.|+||+|++|++++..|+..+.  +|++++.+....  ...++..   ..+++....    ..++.+++++.|+||
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            47999999999999999999998887  888887654211  1112221   122332221    112345678899999


Q ss_pred             EcCCCCCCC---C-CCHHH-----HHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          102 IPAGVPRKP---G-MTRDD-----LFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       102 ~~ag~~~~~---g-~~r~~-----~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++|+.....   . ....+     .+..|+.....+++.+.++..-..+|++|
T Consensus        85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~S  137 (353)
T PLN02896         85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTS  137 (353)
T ss_pred             ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEe
Confidence            999864211   1 12222     33344577888888887663223455544

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.76  E-value=6.3e-05  Score=58.31  Aligned_cols=94  Identities=20%  Similarity=0.282  Sum_probs=60.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC-CcceEEEE-eCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNP-LVSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ||+|||+ |.+|++++..|...+ ...+|.++ +.++.  ...++.... ...+..    .+..+++++||+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~~~~~~----~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-GVQATA----DDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-TTEEES----EEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-cccccc----CChHHhhccCCEEEEEEC--
Confidence            7999998 999999999999887 23488866 77642  222232211 112221    245788999999999851  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                                    -..+.++++.+....++..+|-++||
T Consensus        71 --------------p~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --------------PQQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --------------GGGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --------------HHHHHHHHHHHhhccCCCEEEEeCCC
Confidence                          13345556666445578888877776

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.74  E-value=0.00068  Score=64.18  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcC-CCCceEEEEe----cCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHI-NTRSEVAGYM----GNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~-~~~~~v~~~~----~~~d~~~al~~aDiVi~  102 (340)
                      ++|.|+||+|++|++++..|+..++  +|++...+. .......+... ....+++...    ...++.++++++|+||+
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            5999999999999999999998887  777554443 11122222211 1111233221    11234566789999999


Q ss_pred             cCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHh
Q 019519          103 PAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKY  135 (340)
Q Consensus       103 ~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~  135 (340)
                      +|+..... .....+++..|+.....+.+.+.+.
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            99853211 1122345678999999999988765

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.73  E-value=0.00017  Score=61.94  Aligned_cols=88  Identities=22%  Similarity=0.280  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      |+||++||. |.+|+.++..|...++  +|..||++.  ....++.+..    .+..   .++.+++++||+|+.+.   
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v---   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV---   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S---
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec---
Confidence            679999998 9999999999999998  999999764  2223344322    3332   35678899999999974   


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH--HHHhC-CCcEEE
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSA--IAKYC-PNAIVN  142 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~--i~~~~-p~a~vi  142 (340)
                                  .+.+.++++...  +.... +..++|
T Consensus        66 ------------~~~~~v~~v~~~~~i~~~l~~g~iii   91 (163)
T PF03446_consen   66 ------------PDDDAVEAVLFGENILAGLRPGKIII   91 (163)
T ss_dssp             ------------SSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred             ------------ccchhhhhhhhhhHHhhccccceEEE
Confidence                        234555666655  54444 344444

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.70  E-value=0.00019  Score=66.41  Aligned_cols=99  Identities=19%  Similarity=0.227  Sum_probs=67.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~~~  110 (340)
                      |.|+||+|++|++++..|+..++  +|+.++.+......  +...    .+..... .+..++++++|+||++++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999998887  99999986521100  0000    0111111 22356789999999999876432


Q ss_pred             C-C---CHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019519          111 G-M---TRDDLFNINAGIVKDLCSAIAKYCPN  138 (340)
Q Consensus       111 g-~---~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (340)
                      + .   ....+...|+...+.+++.+++....
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  103 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK  103 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence            2 1   23456677999999999999987643

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.70  E-value=0.00058  Score=71.51  Aligned_cols=119  Identities=14%  Similarity=0.015  Sum_probs=72.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CCc---ccccc--CCCCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL--EDSDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al--~~aDiV  100 (340)
                      +++||.|+||+|++|++++..|+..+...+|+.+|..........+.......+++.... -+|   +...+  .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            357999999999999999999988743338998986431111111111100112333221 112   11122  689999


Q ss_pred             EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |++|+......  ....++...|+.....+++.+++.+.-..+|.+|
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S  131 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS  131 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence            99998653221  1234667889999999999998876333555554

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.69  E-value=0.0003  Score=67.69  Aligned_cols=100  Identities=20%  Similarity=0.260  Sum_probs=66.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHh--cC--C-------CCceEEEEecCCcccccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG--HI--N-------TRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~--~~--~-------~~~~v~~~~~~~d~~~al   94 (340)
                      +++|||+|+|+ |.+|+.++..|...+   +++++..++..  ..++.  +.  .       .+.++..+   +|+.+++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~t---~d~~~a~   75 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRAT---TDFAEAA   75 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEEE---CCHHHHH
Confidence            35789999998 999999999998876   36777765422  22222  11  0       11234432   5667789


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (340)
                      +++|+||++.  |              ...++++++.+..+- ++..+|.++|-.+.
T Consensus        76 ~~aDlVilav--p--------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         76 NCADVVVMGV--P--------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             hcCCEEEEEe--C--------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            9999999984  2              335666666666553 67778888987764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.69  E-value=0.00061  Score=63.96  Aligned_cols=106  Identities=20%  Similarity=0.236  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC-CceEEEE-ecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGY-MGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~-~~~v~~~-~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |||+|+|+ |.+|+.++..|...+.  +|.++|.+........-..... ....... ...++..+ ++++|+||++.-.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k~   76 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAVKA   76 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEeccc
Confidence            68999998 9999999999998886  8999998542111111011100 0111100 11234434 4899999998521


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHH
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPI  154 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~  154 (340)
                      .                -+.++++.+..+ .++..|+...|.++....+
T Consensus        77 ~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l  109 (304)
T PRK06522         77 Y----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEEL  109 (304)
T ss_pred             c----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHH
Confidence            1                123344444443 3667888899998766543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.69  E-value=0.00044  Score=68.34  Aligned_cols=114  Identities=21%  Similarity=0.244  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC--------------CCceEEEEecCCccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------------TRSEVAGYMGNDQLG   91 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~   91 (340)
                      |.++||+|||. |.+|..+|..|+..|+  +|..+|+++.+-..+......              ....+...   ++  
T Consensus         1 m~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~---~~--   72 (415)
T PRK11064          1 MSFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT---TT--   72 (415)
T ss_pred             CCccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee---cc--
Confidence            45689999998 9999999999999987  999999986322221111110              01123221   22  


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHH
Q 019519           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIA  155 (340)
Q Consensus        92 ~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~  155 (340)
                        +++||+||++...|.+.+.      ..++..+.+.++.+.++. ++.+||.- |.|.+..-.+.
T Consensus        73 --~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~  130 (415)
T PRK11064         73 --PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMA  130 (415)
T ss_pred             --cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHH
Confidence              4589999999877754321      123444555556666655 34444433 55666554443

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.68  E-value=0.00029  Score=67.41  Aligned_cols=155  Identities=8%  Similarity=0.006  Sum_probs=87.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhc-C--CCCceEEEEe-cCC---ccccccCC--
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGH-I--NTRSEVAGYM-GND---QLGQALED--   96 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~-~--~~~~~v~~~~-~~~---d~~~al~~--   96 (340)
                      ++|.|+||+|++|++++..|+..+.  +|+++|.+..   ......+.. .  .....++... +-+   .+.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999998887  8999987641   111111110 0  0011222221 112   23345564  


Q ss_pred             CCEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHhC-CC-cEEEEecC------CCCccHHHHHHHHHHhCCCC
Q 019519           97 SDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYC-PN-AIVNMISN------PVNSTVPIAAEVFKKAGTYN  166 (340)
Q Consensus        97 aDiVi~~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~-p~-a~viv~tN------P~d~~t~~~~~~~~~sg~~~  166 (340)
                      .|+||++|+..... . ......+..|+.....+++.+.+.+ .+ ..++.+|.      +.+.  ..    -.... +.
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~--~~----~E~~~-~~  151 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI--PQ----NETTP-FY  151 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC--CC----CCCCC-CC
Confidence            59999999864321 1 1233445668888889999888765 22 34544332      1110  00    01122 44


Q ss_pred             CCceEeccchhHHHHHHHHHHHcCCC
Q 019519          167 EKKLFGVTTLDVVRAKTFYAGKANVN  192 (340)
Q Consensus       167 ~~kviG~~~ld~~R~~~~la~~l~v~  192 (340)
                      |...+|.+.+...++...+++..+++
T Consensus       152 p~~~Y~~sK~~~e~~~~~~~~~~~~~  177 (343)
T TIGR01472       152 PRSPYAAAKLYAHWITVNYREAYGLF  177 (343)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCc
Confidence            55667776555555666666666664

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.68  E-value=0.00035  Score=66.92  Aligned_cols=100  Identities=24%  Similarity=0.246  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC-------------CceEEEEecCCcccccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-------------RSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~-------------~~~v~~~~~~~d~~~al   94 (340)
                      +|||+|+|+ |.+|+.++..|...++  +|.++|.++.. .  .+.....             ..++..   +++. +++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-~~~   71 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-D--ELRAHGLTLTDYRGRDVRVPPSAIAF---STDP-AAL   71 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-H--HHHhcCceeecCCCcceecccceeEe---ccCh-hhc
Confidence            479999998 9999999999999887  89999975311 1  1111110             011222   2344 568


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHH
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVP  153 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~  153 (340)
                      +++|+||++...+    .            ..++++.+..+ .++.+|+..+|..+....
T Consensus        72 ~~~D~vil~vk~~----~------------~~~~~~~l~~~~~~~~iii~~~nG~~~~~~  115 (341)
T PRK08229         72 ATADLVLVTVKSA----A------------TADAAAALAGHARPGAVVVSFQNGVRNADV  115 (341)
T ss_pred             cCCCEEEEEecCc----c------------hHHHHHHHHhhCCCCCEEEEeCCCCCcHHH
Confidence            9999999986322    1            12334445544 367777778898765443

>PLN02583 cinnamoyl-CoA reductase

Probab=97.67  E-value=0.0011  Score=62.21  Aligned_cols=113  Identities=12%  Similarity=0.061  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH----HHHHHHhcCCCCceEEEEe----cCCccccccCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~----~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiV  100 (340)
                      ++|+|+||+|++|++++..|+..|+  +|++.+.+...    ....++....  .++....    ...++.+++.++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCEE--ERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccCC--CceEEEEecCCCHHHHHHHHcCCCEE
Confidence            5899999999999999999999988  88888764211    1112221111  1222221    112345788999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++.++.+........+.+..|+.....+.+.+.+...-..||++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S  127 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS  127 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            987654432211234677889999999999988763113444443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.67  E-value=0.00046  Score=64.89  Aligned_cols=118  Identities=10%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC-----CceEEE-EecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVAG-YMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~-----~~~v~~-~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|+|+ |.+|..++..|...++  +|.+++. +..-.  .+.+...     ...... ....+|..++.+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKRAK--ALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHHHH--HHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            68999998 9999999999998887  8999997 31111  1221110     001100 0011344455689999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe-ccc
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG-VTT  175 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG-~~~  175 (340)
                      +.-.+                -+.++++.+..+ .++..|+.+.|.++....+.    +.   +|++++++ ++.
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~----~~---~~~~~v~~g~~~  126 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLE----PY---FGRERVLGGVVF  126 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHH----Hh---CCcccEEEEEEE
Confidence            85211                133344455544 35677888899987554432    22   66677774 443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.65  E-value=0.00047  Score=67.49  Aligned_cols=113  Identities=20%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC--------------CCceEEEEecCCcccccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------------TRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~~al   94 (340)
                      |||+|||+ |.||..++..++. ++  +|+.+|+++.+  ...+....              ...++..   ++|..++.
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~~---t~~~~~~~   71 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFNA---TLDKNEAY   71 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEEE---ecchhhhh
Confidence            58999998 9999999977764 66  89999998621  11122100              1123332   24556778


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE-EecCCCCccHHHH
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN-MISNPVNSTVPIA  155 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~vi-v~tNP~d~~t~~~  155 (340)
                      ++||+||++...|.......     -++..+++.++.|.+..|+.++| -.|-|.+..-.+.
T Consensus        72 ~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~  128 (388)
T PRK15057         72 RDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMH  128 (388)
T ss_pred             cCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHH
Confidence            99999999976653221111     23344444445554434544443 3466666655543

>PRK06194 hypothetical protein; Provisional

Probab=97.64  E-value=0.0013  Score=60.95  Aligned_cols=160  Identities=14%  Similarity=0.135  Sum_probs=87.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      ++++|.|+||+|++|++++..|+..|.  +|+++|.+.  ......++....  .++.... +-+|   ++++++     
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~   80 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALER   80 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998887  899999865  223333343221  1332221 1122   222222     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHH----HHHHHHHhCCC-----cEEEEecCCCCccHHHHHHH
Q 019519           96 --DSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKD----LCSAIAKYCPN-----AIVNMISNPVNSTVPIAAEV  158 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i~~~----i~~~i~~~~p~-----a~viv~tNP~d~~t~~~~~~  158 (340)
                        ..|+||+.||.....   ..+..   ..+..|+.....    +.+.+.+.+.+     +.++++|.....        
T Consensus        81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--------  152 (287)
T PRK06194         81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--------  152 (287)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc--------
Confidence              469999999874321   12222   234555554444    44445554432     566655543221        


Q ss_pred             HHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       159 ~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                         .+ .+..-.++.+......+...+++.++.....+++..+.
T Consensus       153 ---~~-~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~  192 (287)
T PRK06194        153 ---LA-PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC  192 (287)
T ss_pred             ---cC-CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence               11 33334455543333345566667776655556654443

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=97.64  E-value=0.0002  Score=67.39  Aligned_cols=99  Identities=18%  Similarity=0.200  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~ag~  106 (340)
                      |||.|+||+|++|++++..|...+   +++.+|.... ....|+.            +...+.++++  ++|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~------------d~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFS------------NPEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCC------------CHHHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999888776   4777775421 0000111            1112334455  58999999876


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ....  ..........|+.....+++.+++.+  ..++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            4321  12334455789999999999998875  3455444

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=0.00035  Score=66.67  Aligned_cols=100  Identities=15%  Similarity=0.370  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhc--C------CCCceEEEEecCCcccccc-CCCCE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--I------NTRSEVAGYMGNDQLGQAL-EDSDV   99 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~--~------~~~~~v~~~~~~~d~~~al-~~aDi   99 (340)
                      |||+|+|| |.+|+.++..|...+.  +|.|++.++.....+.-.+  .      ..+..+..+   +|+.+++ .++|+
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~Dl   74 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK---SAIDEVLSDNATC   74 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe---CCHHHHHhCCCCE
Confidence            58999998 9999999999998886  8999998652211111111  1      011234433   4555666 58999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCCc
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-Y-CPNAIVNMISNPVNS  150 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~-~p~a~viv~tNP~d~  150 (340)
                      ||++.  |              ..-+.++++.+.. + .++..++..+|=.+.
T Consensus        75 iiiav--k--------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         75 IILAV--P--------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             EEEEe--C--------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            99984  1              2334455555554 3 467777778887643

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.62  E-value=0.00059  Score=58.90  Aligned_cols=93  Identities=27%  Similarity=0.296  Sum_probs=65.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-C---CccccccCCCCEEEEcCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDiVi~~ag~  106 (340)
                      |+|+||+|++|+.++..|+..+.  +|.++-.++.+..  +  +    ..++.... .   +++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~--~----~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D--S----PGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H--C----TTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c--c----cccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999996  9999987653221  1  1    23333321 1   2446889999999999876


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +.+           ....++.+.+.+++.... .++++|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            543           277888888888877544 444444

...

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.59  E-value=0.00037  Score=66.01  Aligned_cols=79  Identities=24%  Similarity=0.370  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .|||+|||+ |.+|++++..|...++  +|.++|.++.                      .++.+++++||+||++.  |
T Consensus         4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v--p   56 (308)
T PRK14619          4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV--S   56 (308)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC--C
Confidence            479999998 9999999999999887  9999997631                      23457788999999984  2


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP  147 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP  147 (340)
                                    ...++++++.+..+  .++.+++..|+.
T Consensus        57 --------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g   84 (308)
T PRK14619         57 --------------MKGVRPVAEQVQALNLPPETIIVTATKG   84 (308)
T ss_pred             --------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence                          13455555666543  467788777773

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.58  E-value=0.00043  Score=66.13  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC------C--CCceEEEEecCCccccccCCCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI------N--TRSEVAGYMGNDQLGQALEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~------~--~~~~v~~~~~~~d~~~al~~aDi   99 (340)
                      +|||+|||+ |.+|+.++..|...++  +|.++|.++.......-.+.      .  ...++...   +++.++++++|+
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~---~~~~e~~~~aD~   77 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYPT---ADPEEALAGADF   77 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEe---CCHHHHHcCCCE
Confidence            479999998 9999999999998887  89999986522221111110      1  11123332   456677899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      ||++.-..                -++++.+.   ..|..+++.++|..+
T Consensus        78 Vi~~v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~  108 (328)
T PRK14618         78 AVVAVPSK----------------ALRETLAG---LPRALGYVSCAKGLA  108 (328)
T ss_pred             EEEECchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence            99985110                12333332   336677888888654

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.58  E-value=0.00063  Score=65.95  Aligned_cols=98  Identities=19%  Similarity=0.322  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC-----cceEEEEeCCCc---HHHHHHHh--cCC--------CCceEEEEecCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT---PGVAADVG--HIN--------TRSEVAGYMGND   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~-----~~el~L~D~~~~---~~~~~dl~--~~~--------~~~~v~~~~~~~   88 (340)
                      .++||+|||+ |.-|+++|..|...+.     ..+|.|+..++.   +..+.++.  |..        .+.++..+   +
T Consensus        10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~t---s   85 (365)
T PTZ00345         10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAV---S   85 (365)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEe---c
Confidence            4579999998 9999999999987751     238899987762   23344443  221        23456654   5


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hC-CCcEEEEe
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK--YC-PNAIVNMI  144 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~--~~-p~a~viv~  144 (340)
                      |+.+++++||+||++.  |              ...++++++.++.  +- ++..+|.+
T Consensus        86 dl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~  128 (365)
T PTZ00345         86 DLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISL  128 (365)
T ss_pred             CHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEE
Confidence            7778999999999874  2              3556677777765  33 34455544

>PLN02240 UDP-glucose 4-epimerase

Probab=97.57  E-value=0.0011  Score=63.31  Aligned_cols=116  Identities=19%  Similarity=0.150  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC--CCceEEEEe----cCCccccccC--C
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYM----GNDQLGQALE--D   96 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~----~~~d~~~al~--~   96 (340)
                      +++||.|+||+|++|++++..|+..+.  +|+++|...  .......+.+..  ...++....    ...++.++++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            346999999999999999999998886  899998643  111111111110  011222211    1122223343  6


Q ss_pred             CCEEEEcCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           97 SDVVIIPAGVPRK-PG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        97 aDiVi~~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|+||++++.... .. ......+..|+.....+++.+.+...+ .++.+|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            8999999886421 11 234567889999999999988876534 344444

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.0011  Score=68.96  Aligned_cols=109  Identities=13%  Similarity=0.072  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh--CCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-Cc--------cccccCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ--------LGQALEDS   97 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~--~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d--------~~~al~~a   97 (340)
                      |||.|+||+|++|++++..|+.  .+.  +|.+++.+.......++.......+++...+. .|        ..+.++++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~   78 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDI   78 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCC
Confidence            5899999999999999999984  444  89999986522222222111000123322110 11        01223899


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI  140 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~  140 (340)
                      |+||++|+... ......+....|+...+.+++.+.+...+.+
T Consensus        79 D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~  120 (657)
T PRK07201         79 DHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAATF  120 (657)
T ss_pred             CEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCeE
Confidence            99999998542 2234456667899999999999887644433

>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases

Probab=97.55  E-value=0.00057  Score=62.16  Aligned_cols=78  Identities=13%  Similarity=0.210  Sum_probs=50.8

Q ss_pred             CCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHH
Q 019519          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (340)
Q Consensus       248 kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s  323 (340)
                      +++..++     ..++.+|.+|.+   .++.+++ ++|.+   |+|.++++||+|+++|+.++ ..++||+...++++..
T Consensus       133 ~~~~~~a-----~~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~-~~g~lP~~~~~li~~~  203 (232)
T PF11975_consen  133 RGSGEYA-----EAAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPV-AVGPLPPAIAGLIQQV  203 (232)
T ss_dssp             STTSCHH-----HHHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB--SB---HHHHHHHHHH
T ss_pred             ccccchH-----HHHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEec-cCCCCCHHHHHHHHHH
Confidence            3556666     334455677653   3455544 77875   89999999999999999995 6679999999988776


Q ss_pred             HHHHHHHHHHH
Q 019519          324 KPELKASIEKG  334 (340)
Q Consensus       324 ~~~l~~~~~~~  334 (340)
                      ..--+-.++.+
T Consensus       204 ~~~e~L~veAa  214 (232)
T PF11975_consen  204 KAYERLTVEAA  214 (232)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55554444444

It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.53  E-value=0.00058  Score=65.68  Aligned_cols=95  Identities=19%  Similarity=0.368  Sum_probs=61.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC------CcceEEEEeCCC---cHHHHHHHh--cCC--------CCceEEEEecCCcc
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNP------LVSRLALYDIAN---TPGVAADVG--HIN--------TRSEVAGYMGNDQL   90 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~------~~~el~L~D~~~---~~~~~~dl~--~~~--------~~~~v~~~~~~~d~   90 (340)
                      ||+|||+ |..|.++|..|...+      +..+|.|+..++   .......+.  |..        .+.++..+   +|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at---~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAV---PDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEE---CCH
Confidence            7999998 999999999998866      123999998743   222222332  221        13345553   578


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe
Q 019519           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~  144 (340)
                      ++++++||+||++.  |              ...++++++.+..+- ++..+|.+
T Consensus        77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~  115 (342)
T TIGR03376        77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISC  115 (342)
T ss_pred             HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEE
Confidence            88999999999983  3              345555556665543 34445444

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=97.50  E-value=0.0005  Score=65.66  Aligned_cols=108  Identities=13%  Similarity=0.011  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcC--CCCceEEEEe----cCCccccccCC--
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI--NTRSEVAGYM----GNDQLGQALED--   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~--~~~~~v~~~~----~~~d~~~al~~--   96 (340)
                      .++|.|+||+|++|++++..|+..+.  +|+++|.++.   ......+...  .....+....    ...++.+++++  
T Consensus         6 ~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   83 (340)
T PLN02653          6 RKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK   83 (340)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence            46899999999999999999998887  8999887531   1111111100  0011222211    11223344554  


Q ss_pred             CCEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 019519           97 SDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCP  137 (340)
Q Consensus        97 aDiVi~~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (340)
                      .|+||++|+..... . ......+..|+.....+++.+.++..
T Consensus        84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence            59999999864322 1 12334456788888999999988764

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.50  E-value=0.0007  Score=63.62  Aligned_cols=108  Identities=13%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc-ccccc-----CCCCEEEEcC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQAL-----EDSDVVIIPA  104 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d-~~~al-----~~aDiVi~~a  104 (340)
                      |.|+||+|++|++++..|+..++ ..+.++|..........+.+.... ....   ..+ +.+.+     .++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~-d~~~---~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDIA-DYMD---KEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhhh-hhhh---HHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998875 346777875421110111111100 0000   011 11222     3799999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +.+..........+..|.....++.+.+.+...  .+|..|
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S  115 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence            864333334455678899999999999987653  344443

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.48  E-value=0.00066  Score=65.36  Aligned_cols=110  Identities=20%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe----cCCccccccCCCCEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI  101 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVi  101 (340)
                      ++.++.|+||+||+|.+++..|...+...||.++|.... ...-.+.... ...+++...    +..+...|+.++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            457999999999999999999998886679999998762 1111111110 112222221    123557889999 666


Q ss_pred             EcCCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019519          102 IPAGVPR-KPGM-TRDDLFNINAGIVKDLCSAIAKYCPN  138 (340)
Q Consensus       102 ~~ag~~~-~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (340)
                      +.+..+. ...+ .|......|+...+.+.+.+.+.+-+
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~  119 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK  119 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence            6544332 2233 36667788999999999999988644

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.46  E-value=0.00019  Score=66.09  Aligned_cols=112  Identities=14%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      .++||+|+||+|||||+++-.|+..+.  +|...|..-. +....++|....++.+..- .+-....++.+|-|+++|..
T Consensus        26 ~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAap  101 (350)
T KOG1429|consen   26 QNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAAP  101 (350)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhccC
Confidence            357999999999999999999999986  9999997542 2222334333222222111 11124568999999998864


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 019519          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (340)
Q Consensus       107 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (340)
                      .-.  +-.+..+.+.-|.-.........++.+  +.++.+
T Consensus       102 asp~~y~~npvktIktN~igtln~lglakrv~--aR~l~a  139 (350)
T KOG1429|consen  102 ASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLA  139 (350)
T ss_pred             CCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEe
Confidence            222  223333333444444444444444443  555544

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0014  Score=63.76  Aligned_cols=76  Identities=25%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |+||.|||| |+||+.++..|++.+. .+|.+.|.... ...+.+..+... ...+... +...+.+.+++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence            579999998 9999999999998875 69999998742 222222221111 1122221 12345678899999999975


Q ss_pred             C
Q 019519          106 V  106 (340)
Q Consensus       106 ~  106 (340)
                      .
T Consensus        78 ~   78 (389)
T COG1748          78 P   78 (389)
T ss_pred             c
Confidence            4

>PRK12320 hypothetical protein; Provisional

Probab=97.43  E-value=0.0006  Score=71.21  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||.|+||+|++|++++..|...++  +|..+|.....     ..+... ..+........+.+++.++|+||++++...
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~v-e~v~~Dl~d~~l~~al~~~D~VIHLAa~~~   72 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRV-DYVCASLRNPVLQELAGEADAVIHLAPVDT   72 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCc-eEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence            5899999999999999999998887  89999965321     111110 012111111123455689999999987531


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                        ..    ....|+....++++.+++.+.  .+|.+|
T Consensus        73 --~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         73 --SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             --cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence              11    114688888899998887654  455554

>PLN02686 cinnamoyl-CoA reductase

Probab=97.42  E-value=0.00078  Score=65.38  Aligned_cols=108  Identities=11%  Similarity=0.129  Sum_probs=67.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcC---C-CCceEEEEe----cCCccccccCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI---N-TRSEVAGYM----GNDQLGQALED   96 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~---~-~~~~v~~~~----~~~d~~~al~~   96 (340)
                      +++++|.|+||+|++|++++..|+..++  +|+++..+... ....++...   . ....+....    ...++.+++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~  128 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG  128 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence            4467999999999999999999999887  88775544311 111122110   0 001222211    11234567889


Q ss_pred             CCEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHh
Q 019519           97 SDVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKY  135 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~  135 (340)
                      +|.|+++++.....+.  ....+...|....+.+.+.+.+.
T Consensus       129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~  169 (367)
T PLN02686        129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT  169 (367)
T ss_pred             ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence            9999998875322221  12344567889999999998875

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.40  E-value=0.0019  Score=63.29  Aligned_cols=114  Identities=19%  Similarity=0.109  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH----HHHHHhcCCCCc-eEEEEe-cCCccccccC----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRS-EVAGYM-GNDQLGQALE----   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~----~~~dl~~~~~~~-~v~~~~-~~~d~~~al~----   95 (340)
                      .+.+||.|+||+|++|++++..|+..++  +|++++.+....    ...++....... .+.... +..++.++++    
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            4567999999999999999999998887  899998764110    111111111011 122211 1123445555    


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++|+||++++.+....   .+.+..|......+.+.+++.+-. .++++|
T Consensus       136 ~~D~Vi~~aa~~~~~~---~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        136 PVDVVVSCLASRTGGV---KDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             CCcEEEECCccCCCCC---ccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            5999999876432111   123456777788888888776543 344444

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.38  E-value=0.00074  Score=62.61  Aligned_cols=95  Identities=21%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCC--CEEEEcCCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVP  107 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a--DiVi~~ag~~  107 (340)
                      ||.|+||+|++|++++..|...++  ++++++...     .|+.+            ..++.++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999998887  888887531     11111            12334556655  9999999864


Q ss_pred             CCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          108 RKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       108 ~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ....  ......+..|......+++.+.+...  .+|++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  23455678899999999999887643  455444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.36  E-value=0.00081  Score=63.84  Aligned_cols=117  Identities=16%  Similarity=0.281  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHH---HhcCCCCc---eEEEEecCCccccccCCCCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD---VGHINTRS---EVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~d---l~~~~~~~---~v~~~~~~~d~~~al~~aDiV  100 (340)
                      .+|||+|+|+ |.+|..++..|...++  ++.+++.+..+.....   +.......   .+...   ++ .++...+|+|
T Consensus         4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~D~v   76 (313)
T PRK06249          4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAY---RS-AEDMPPCDWV   76 (313)
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEE---cc-hhhcCCCCEE
Confidence            3589999998 9999999999998887  8999988652211110   00000000   11121   22 2356789999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |++.-..    +        .    .+.++.+... .|++.++...|=.+..-.+.    +.   +|++++++-
T Consensus        77 ilavK~~----~--------~----~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~----~~---~~~~~v~~g  127 (313)
T PRK06249         77 LVGLKTT----A--------N----ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLR----EI---LPAEHLLGG  127 (313)
T ss_pred             EEEecCC----C--------h----HhHHHHHhhhcCCCCEEEEecCCCCcHHHHH----HH---CCCCcEEEE
Confidence            9985211    1        1    2233333333 37888888888877544332    22   677787754

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.35  E-value=0.0012  Score=62.79  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHhCCCcceEEEEeCCCc--H--------HH--HHH----HhcCC---------CCceEEEEecCCcccccc
Q 019519           40 IGQPLALLMKLNPLVSRLALYDIANT--P--------GV--AAD----VGHIN---------TRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        40 VG~~~a~~l~~~~~~~el~L~D~~~~--~--------~~--~~d----l~~~~---------~~~~v~~~~~~~d~~~al   94 (340)
                      +|+.+|..++..|+  +|+|+|.++.  .        +.  ..+    +....         ...+++..+ +.|.++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            46888999998898  9999999861  1        11  001    11100         123566542 12456889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      ++||+||.+.              .+|..+.+.+..++.+.++ ++++  .||.......-+   ....  -.|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~l---a~~~--~~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDL---QRHV--AHPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHH---Hhhc--CCcccEEEE
Confidence            9999999986              4788999999999999984 6655  888877544332   2233  246788888


Q ss_pred             cc
Q 019519          174 TT  175 (340)
Q Consensus       174 ~~  175 (340)
                      +.
T Consensus       137 Hf  138 (314)
T PRK08269        137 HW  138 (314)
T ss_pred             ec
Confidence            64

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.34  E-value=0.0012  Score=61.82  Aligned_cols=109  Identities=14%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccc----cCCCCEEEEcCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIPAGV  106 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a----l~~aDiVi~~ag~  106 (340)
                      |.|+||+|++|++++..|...+. .+++++|..........+........+..   ...++..    +.++|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999998874 26888886542111111111000001110   0111121    2489999999986


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +..........+..|+.....+++.+.+...  .+|.+|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            5322334456678899999999999987753  345444

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PLN02253 xanthoxin dehydrogenase

Probab=97.33  E-value=0.0055  Score=56.61  Aligned_cols=148  Identities=16%  Similarity=0.234  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      ++.+++.|+||+|.+|++++..|+..|.  +|+++|.++.  .....++..   ..++.... +-+|   ..++++    
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~   90 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVD   90 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHH
Confidence            3456899999999999999999998887  8999998652  222223321   11222211 1122   222222    


Q ss_pred             ---CCCEEEEcCCCCCCC-----CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHH
Q 019519           96 ---DSDVVIIPAGVPRKP-----GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEVFKK  161 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~-----g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~  161 (340)
                         ..|++|+.+|.....     ..+   -...+..|+.-...+.+.+..+   ...+.+++++.....           
T Consensus        91 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~-----------  159 (280)
T PLN02253         91 KFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASA-----------  159 (280)
T ss_pred             HhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhc-----------
Confidence               689999999864321     112   2334556655444444433322   134566666543321           


Q ss_pred             hCCCCCCceEeccchhHHHHHHHHHHHcC
Q 019519          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKAN  190 (340)
Q Consensus       162 sg~~~~~kviG~~~ld~~R~~~~la~~l~  190 (340)
                      .+ .+....+|.+......+-+.+++.++
T Consensus       160 ~~-~~~~~~Y~~sK~a~~~~~~~la~e~~  187 (280)
T PLN02253        160 IG-GLGPHAYTGSKHAVLGLTRSVAAELG  187 (280)
T ss_pred             cc-CCCCcccHHHHHHHHHHHHHHHHHhh
Confidence            11 22223556543333456666777764

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.29  E-value=0.0017  Score=59.05  Aligned_cols=116  Identities=18%  Similarity=0.255  Sum_probs=68.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (340)
                      +.+++.|+||+|.+|++++..|+..+.  +|++++.++  ......++.+..  .++.... +-+|.   .++       
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAER   81 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999887  899999876  222233343322  1222221 11221   112       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +.+.|+||+++|.....   ..+   ....+..|..-    .+.+.+.+.+.++.+.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss  144 (262)
T PRK13394         82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGS  144 (262)
T ss_pred             cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcc
Confidence            23489999999864211   111   22344456655    6666666633344455665553

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.29  E-value=0.00035  Score=62.44  Aligned_cols=166  Identities=18%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEE-ecCCccccccCCC--CEEEEcCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGY-MGNDQLGQALEDS--DVVIIPAGV  106 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~a--DiVi~~ag~  106 (340)
                      |.|+||+|++|++++..|+..+.  +++-+.... ............   .+... ....++.+.+++.  |.||++|+.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~---~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVE---FVIGDLTDKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEE---EEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEE---EEEeeccccccccccccccCceEEEEeecc
Confidence            78999999999999999999987  555444433 222221111100   01110 0112445666766  999999986


Q ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHH-HhCCCCCCceEeccchhHHHHHH
Q 019519          107 PR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK-KAGTYNEKKLFGVTTLDVVRAKT  183 (340)
Q Consensus       107 ~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~-~sg~~~~~kviG~~~ld~~R~~~  183 (340)
                      +.  .......+.+..|+...+.+.+.+.+... ..++..+. ..+.......... .+. +.+...+|.+.....++..
T Consensus        76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~y~~~~~~~~~e~~~-~~~~~~Y~~~K~~~e~~~~  152 (236)
T PF01370_consen   76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASVYGDPDGEPIDEDSP-INPLSPYGASKRAAEELLR  152 (236)
T ss_dssp             SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGGGTSSSSSSBETTSG-CCHSSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            53  11134567788999999999999999876 34554443 2110000000000 000 1122234444333344555


Q ss_pred             HHHHHcCCCCCCCce-eEEEec
Q 019519          184 FYAGKANVNVAEVNV-PVVGGH  204 (340)
Q Consensus       184 ~la~~l~v~~~~v~~-~v~G~h  204 (340)
                      .+.++.+++...++. .++|.+
T Consensus       153 ~~~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  153 DYAKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHHHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccccccc
Confidence            556666776666654 356655

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0076  Score=55.50  Aligned_cols=119  Identities=15%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      ++.++|.|+||+|.+|+.++..|+..+.  +|++++.+.  ......++.......++.... +-+|   ..+.++    
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA   82 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4457999999999999999999999887  899999765  222233333211111222221 1112   122222    


Q ss_pred             ---CCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           96 ---DSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                         ..|++|+.+|.....    ..+.   ...+..|......+.+.+.++   ...+.++++|.
T Consensus        83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS  146 (276)
T PRK05875         83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS  146 (276)
T ss_pred             HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence               679999998853211    1222   233445666665555544332   23456666654

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.29  E-value=0.0034  Score=62.29  Aligned_cols=111  Identities=14%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC------------CceEEEEecCCcccccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~------------~~~v~~~~~~~d~~~al   94 (340)
                      ++|||+|||. |.||..+|..|+. ++  +++.||+++.+  +..|.....            ...+..+   ++. +++
T Consensus         5 ~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~~--ve~l~~G~~~~~e~~~~~l~~~g~l~~t---~~~-~~~   74 (425)
T PRK15182          5 DEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKKR--ILELKNGVDVNLETTEEELREARYLKFT---SEI-EKI   74 (425)
T ss_pred             CCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHHH--HHHHHCcCCCCCCCCHHHHHhhCCeeEE---eCH-HHH
Confidence            3589999997 9999999998876 45  99999998622  223332110            0123332   343 568


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE-ecCCCCccHH
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNM-ISNPVNSTVP  153 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv-~tNP~d~~t~  153 (340)
                      ++||++|++.+.|.+.+..      .++.-+....+.|.++. +..++|+ .|-|.+....
T Consensus        75 ~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~  129 (425)
T PRK15182         75 KECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEE  129 (425)
T ss_pred             cCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHH
Confidence            9999999998887543211      12233333344444444 3333333 4666655443

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.29  E-value=0.0026  Score=57.95  Aligned_cols=70  Identities=10%  Similarity=0.194  Sum_probs=45.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC--cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~--~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +.+||+|||+ |.+|.+++..+...+.  ..+++.++.+.. ....++.+..   .+..+   .|+++.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~~---~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVSTT---TDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEEe---CChHHHHhcCCEEEEec
Confidence            4579999997 9999999998877652  345777775421 1122233211   12222   35567789999999984

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=97.28  E-value=0.0023  Score=59.57  Aligned_cols=161  Identities=16%  Similarity=0.077  Sum_probs=93.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c--HHHHHHHhcCCCCceEEEEec-CCccccccC--CCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYMG-NDQLGQALE--DSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~--~~~~~dl~~~~~~~~v~~~~~-~~d~~~al~--~aDiVi~  102 (340)
                      |+|.|+|+|||+|+++...+.....-.+|+.+|.-. +  .....++.+.+....+++... ...+.+.++  +.|.|++
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            589999999999999998777665445789999765 2  222334554432223333321 112224455  6899999


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE-EecCCCC-ccHH---HHHHHHHHhCCCCCCceEeccc
Q 019519          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN-MISNPVN-STVP---IAAEVFKKAGTYNEKKLFGVTT  175 (340)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~vi-v~tNP~d-~~t~---~~~~~~~~sg~~~~~kviG~~~  175 (340)
                      .|.-..-.  =.....+++-|+-....+.++++++...-.++ +.|.-|= -+..   .+   -..++ +.|+.-+.-+.
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~F---tE~tp-~~PsSPYSASK  156 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAF---TETTP-YNPSSPYSASK  156 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCc---ccCCC-CCCCCCcchhh
Confidence            87543211  12357788999999999999999997542333 3333220 0000   11   12334 66666665532


Q ss_pred             hhHHHHHHHHHHHcCCCC
Q 019519          176 LDVVRAKTFYAGKANVNV  193 (340)
Q Consensus       176 ld~~R~~~~la~~l~v~~  193 (340)
                      -.+--|-+...+.+|++.
T Consensus       157 AasD~lVray~~TYglp~  174 (340)
T COG1088         157 AASDLLVRAYVRTYGLPA  174 (340)
T ss_pred             hhHHHHHHHHHHHcCCce
Confidence            112224555567777754

>PRK05865 hypothetical protein; Provisional

Probab=97.28  E-value=0.0016  Score=69.59  Aligned_cols=104  Identities=18%  Similarity=0.128  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      |||.|+||+|++|++++..|+..++  +|+.+|.+....    +.. .. ..+.... ...++.++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~v-~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-SA-DFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-Cc-eEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999998887  899998753211    110 10 1122211 1234456788999999998753


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ..       ....|+.....+++.+++.+.. .+|++|.+.
T Consensus        73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            21       3467888888999988876543 566666654

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0028  Score=57.91  Aligned_cols=116  Identities=29%  Similarity=0.328  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEe-cCCcccccc--------CCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQLGQAL--------EDS   97 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d~~~al--------~~a   97 (340)
                      +++.|+||+|.+|+.++..|+..+.  +|+++|.+...  ....++..... .-+.... ...+..+++        ...
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGNA-WTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCce-EEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999998887  89999976521  11122221110 0111110 111222222        345


Q ss_pred             CEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCC
Q 019519           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK---YCPNAIVNMISNP  147 (340)
Q Consensus        98 DiVi~~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNP  147 (340)
                      |+||+++|......   .+   -...+..|..-...+.+.+.+   ..+.+.+++++..
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  137 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA  137 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence            99999998753221   12   234556677655555555432   2344566666544

>PRK07680 late competence protein ComER; Validated

Probab=97.18  E-value=0.003  Score=58.72  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=62.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC--cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~--~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |||+|||+ |.+|+.++..|...+.  ..++.++|.+...  ...+.+..  ..+...   .+..+.++++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~~---~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHVA---KTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEEE---CCHHHHHHhCCEEEEecC-
Confidence            58999997 9999999999887773  2479999986522  12222211  123322   244566899999999851 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                      |               ..+.++++.+..+- ++.+|+.++|++.
T Consensus        72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1               22334445554443 5678888888774

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.17  E-value=0.0023  Score=59.14  Aligned_cols=96  Identities=15%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ||||+|||+ |.+|+.++..+...+. ..++.++|.++..  ...+.+..   .+...   .+..+.+++||+||++.  
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~~---~~~~~~~~~advVil~v--   70 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRAA---TDNQEAAQEADVVVLAV--   70 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCeec---CChHHHHhcCCEEEEEc--
Confidence            579999998 9999999998887762 2478999987522  12222211   12221   34456688999999985  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      |              ...++++++.+..+. +..|+.++|-+.
T Consensus        71 ~--------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         71 K--------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             C--------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence            1              223445555555443 456777777653

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.16  E-value=0.0037  Score=58.99  Aligned_cols=95  Identities=20%  Similarity=0.229  Sum_probs=60.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||+|||. |.+|++++..|...++  +|.++|.++..  ...+.....    .......++.+.++++|+|+++.  | 
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~v--p-   68 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMV--P-   68 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEc--C-
Confidence            58999998 9999999999998887  89999987522  222332211    11111123334567899999984  2 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                                  +- .++++++.+.... ++.++|..||..
T Consensus        69 ------------~~-~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        69 ------------HG-IVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             ------------ch-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                        11 3444444555444 567787777764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK05717 oxidoreductase; Validated

Probab=97.15  E-value=0.0033  Score=57.28  Aligned_cols=154  Identities=15%  Similarity=0.163  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------cCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~~   96 (340)
                      .++|.|+||+|++|++++..|+..+.  +++++|.++...... ..+..  .++.... +-+|.   .++       +..
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999998886  899999765222111 11111  1111111 11121   111       134


Q ss_pred             CCEEEEcCCCCCCC-----CCC---HHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 019519           97 SDVVIIPAGVPRKP-----GMT---RDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (340)
Q Consensus        97 aDiVi~~ag~~~~~-----g~~---r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~  166 (340)
                      .|++|+.+|.....     ..+   -...+..|..-...+.+.+..+  ...+.+|++|.....           .+ .+
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~~-~~  152 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------QS-EP  152 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------CC-CC
Confidence            79999999865321     112   2345567777777777666543  234566666643321           11 22


Q ss_pred             CCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       167 ~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      ..-.+|.+......+...+++.++-   .+++..+
T Consensus       153 ~~~~Y~~sKaa~~~~~~~la~~~~~---~i~v~~i  184 (255)
T PRK05717        153 DTEAYAASKGGLLALTHALAISLGP---EIRVNAV  184 (255)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhcC---CCEEEEE
Confidence            2334555432223456667777652   2554444

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.14  E-value=0.0026  Score=61.03  Aligned_cols=97  Identities=24%  Similarity=0.344  Sum_probs=63.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ..+|.|+||+|++|+.++..|....-+.+|++++.++.  ...+.++.+    ..+      .++++++.++|+||++++
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~----~~i------~~l~~~l~~aDiVv~~ts  224 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG----GKI------LSLEEALPEADIVVWVAS  224 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc----ccH------HhHHHHHccCCEEEECCc
Confidence            46999999989999999999875432458999987642  222222221    111      245688999999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t  152 (340)
                      .+...-.+..++                  .+..+++=++.|=|+-.
T Consensus       225 ~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        225 MPKGVEIDPETL------------------KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CCcCCcCCHHHh------------------CCCeEEEEecCCCCCCc
Confidence            764211222111                  35678888898877643

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.14  E-value=0.0046  Score=54.99  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      +..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+
T Consensus        20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            3469999998 9999999999998885 589999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.14  E-value=0.01  Score=53.95  Aligned_cols=116  Identities=17%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (340)
                      ..+|.|+||+|.+|+.++..|+..|.  +|++.|.++.  .....++.+..  .++.... +-+|   +.++       +
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46999999999999999999998887  8999998762  22222333221  1222221 1112   1122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP  147 (340)
                      ...|+||+.+|.....   ..+   -...+..|+.....+.+.+.++.   ..+.++++|..
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            3579999999864211   112   23345567665555555555442   34566766654

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.12  E-value=0.0031  Score=59.05  Aligned_cols=106  Identities=19%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HH-HHHHHhcCCCCceEEEEe-cC---CccccccC--CCCEEE
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PG-VAADVGHINTRSEVAGYM-GN---DQLGQALE--DSDVVI  101 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~-~~~dl~~~~~~~~v~~~~-~~---~d~~~al~--~aDiVi  101 (340)
                      ||.|+||+|++|+.++..|...+.  +++++|.... .. ....+.+..   .+.... +-   .++.++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999998887  7888875431 11 111111110   122211 11   22333443  689999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Q 019519          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAI  140 (340)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~  140 (340)
                      +++|.....  .....+.+..|+.....+++.+.+.....+
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~  116 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKF  116 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEE
Confidence            999864322  123345667899999999998887654433

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.11  E-value=0.0047  Score=57.62  Aligned_cols=71  Identities=14%  Similarity=0.246  Sum_probs=47.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCC--cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~--~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |..|||+|||+ |.+|++++..|+..+.  ..+|.++|.+.. ....++....   .+...   .+..+++++||+||++
T Consensus         1 ~~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~~---~~~~e~~~~aDvVila   72 (279)
T PRK07679          1 MSIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKGT---HNKKELLTDANILFLA   72 (279)
T ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceEe---CCHHHHHhcCCEEEEE
Confidence            34579999997 9999999999988762  247889987531 1222332211   12222   2345678899999998


Q ss_pred             C
Q 019519          104 A  104 (340)
Q Consensus       104 a  104 (340)
                      .
T Consensus        73 v   73 (279)
T PRK07679         73 M   73 (279)
T ss_pred             e
Confidence            5

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0064  Score=54.46  Aligned_cols=115  Identities=19%  Similarity=0.184  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      .++|.|+||+|.+|+.++..|+..+.  +|++++.++.  .....++...   .++..+. +-+|   +.+.+       
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            36899999999999999999988877  8999998752  2222334322   1222221 1111   12222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP  147 (340)
                      ..+|+||+.+|.....   ..+..   +.+..|+.....+.+.+.+.  ...+.++++|..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            3799999998764321   12222   33455655444444444332  234566666654

>PRK07069 short chain dehydrogenase; Validated

Probab=97.10  E-value=0.026  Score=50.87  Aligned_cols=115  Identities=21%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC-C--cHHHHHHHhcCCCCceEEEE-ecCCccc----------cccC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGY-MGNDQLG----------QALE   95 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~-~--~~~~~~dl~~~~~~~~v~~~-~~~~d~~----------~al~   95 (340)
                      ||.|+||+|.+|.+++..|+..+.  +|++.|.+ .  ......++........+... .+-+|.+          +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999998887  89999986 3  22222233322111111111 0111211          1234


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|+||+.+|.....   ..+.   ...+..|+.    ..+.+.+.+++.. .+.++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~  139 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSV  139 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecCh
Confidence            689999999864321   1122   234456666    6777777777654 3456656543

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0064  Score=55.33  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.+++.|+||+|.+|+.++..|+..+.  +|++++.++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            457999999999999999999998887  899999865

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0088  Score=53.98  Aligned_cols=117  Identities=19%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc----CCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----EDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----~~a   97 (340)
                      |++|.|+||+|.+|..++..|+..+.  +|++.|.++.  .....++.... ..++.... +-+|   +++.+    +..
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            45899999999999999999998887  8999998762  22233333211 12333221 1122   22222    245


Q ss_pred             CEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           98 DVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        98 DiVi~~ag~~~~---~g~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                      |+||+.+|....   .+.+..   +.+..|......+.+.+..+   ...+.++++|-.
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  136 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV  136 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            999998875321   123332   34566776666666555443   234566666543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.08  E-value=0.0062  Score=55.15  Aligned_cols=114  Identities=15%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      ..+|.|+||+|.+|++++..|+..+.  +++++|.+..  .....++....  .++.... +-+|   +.+++       
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998887  8999998762  22233343211  1222221 1112   11222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      .+.|+||+.+|.....   ..+   -...+..|..-    ++.+.+.+++.. ...++++|.
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss  140 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMAS  140 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            3689999999864321   111   12233445544    566666666543 334555544

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.07  E-value=0.0033  Score=58.04  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC--cceEEEE-eCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~--~~el~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||++||. |.+|+.++..|...++  ..+|+++ |.+...  ...+....    +...   .+..+++++||+||++.
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~~~~---~~~~e~~~~aDvVil~v   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----VKTA---ASNTEVVKSSDVIILAV   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----CEEe---CChHHHHhcCCEEEEEE
Confidence            68999997 9999999999988775  4578888 765422  22233211    2222   23456788999999986

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.07  E-value=0.0027  Score=59.26  Aligned_cols=64  Identities=23%  Similarity=0.249  Sum_probs=44.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||. |.+|.+++..|...++  +|.++|.++. ...+.+.   .   .+...  +++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---g---~~~~~--~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---G---LVDEA--STDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---C---Ccccc--cCCH-hHhcCCCEEEEcC
Confidence            58999997 9999999999998887  8999998752 1122211   1   11111  1333 5689999999985

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0034  Score=56.76  Aligned_cols=115  Identities=15%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      .++|.|+||+|++|++++..|+..+.  +|++++.+..   .....++....  .++.... +-+|   ...++      
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999998887  8888887541   22222333211  1222211 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                       .+.|+||+.+|............+..|......+++.+.++. ..+.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence             368999998875322122222334456666666666666553 3456666654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.06  E-value=0.0059  Score=57.77  Aligned_cols=68  Identities=22%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+||+|||+ |.+|..++..|...+...+|.++|.++. ...+   .....  .....   .+.++++++||+||++.
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a---~~~g~--~~~~~---~~~~~~~~~aDvViiav   74 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARA---RELGL--GDRVT---TSAAEAVKGADLVILCV   74 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH---HhCCC--Cceec---CCHHHHhcCCCEEEECC
Confidence            369999997 9999999999988775558999998752 1111   11111  11111   23457789999999986

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.04  E-value=0.0011  Score=53.89  Aligned_cols=72  Identities=24%  Similarity=0.304  Sum_probs=46.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhc--CCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~--~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ||+|+||+|.+|+.++..|...+.+.-+.+++.....+....-.+  ......+....  .+ .+.+.++|+||++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence            799999999999999999998877766777776652222111111  11112333321  23 36689999999985

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.04  E-value=0.015  Score=52.44  Aligned_cols=114  Identities=18%  Similarity=0.253  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEec-CCc---cccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------   93 (340)
                      +.++|.|+||+|.+|+.++..|+..+.  +|++++.+..  .....++.+ .  .++..+.. -.|   +..+       
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALER   78 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346999999999999999999998887  8999998762  222233332 1  12222211 111   1122       


Q ss_pred             cCCCCEEEEcCCCCCCC----CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~----g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +...|+||+.+|.....    ..+   ..+.+..|..-.    +.+.+.+.+.. .+.+++++.
T Consensus        79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  141 (251)
T PRK07231         79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG-GGAIVNVAS  141 (251)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            23579999999864211    112   123445565544    44444443333 344555544

>PRK06182 short chain dehydrogenase; Validated

Probab=97.03  E-value=0.0065  Score=55.97  Aligned_cols=114  Identities=15%  Similarity=0.116  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccC-------CCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALE-------DSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~-------~aD   98 (340)
                      ++++|.|+||+|.+|..++..|...+.  +|++.+.++...  .++..... .-+.... ...++.+.++       +.|
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l--~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id   76 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKM--EDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRID   76 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            456899999999999999999998887  899998765211  12221111 1122111 1112223333       789


Q ss_pred             EEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 019519           99 VVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        99 iVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ++|+.+|.....   ..+   ....+..|...    ++.+.+.+++... +.+++++.
T Consensus        77 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         77 VLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            999999864211   111   23344555543    5666666665543 45666654

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.01  E-value=0.016  Score=52.68  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccc-------cC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (340)
                      .+|.|+||+|.+|++++..|++.+.  +|+++|.+.  ......++.+.....++.... +-+|   ...+       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998887  899999865  222222332211101222221 1122   1112       23


Q ss_pred             CCCEEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ..|+||+++|.+...   ..+..   ..+..|+.-    .+.+.+.+.+..+++.++++|...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            579999999865422   22222   223445543    455556555554456777776643

>PRK09135 pteridine reductase; Provisional

Probab=97.01  E-value=0.014  Score=52.40  Aligned_cols=104  Identities=22%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      ++|.|+||+|++|++++..|+..+.  +++++|...   ......++.+... ..+.... +-+|   ...++       
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999998887  899998753   2222233332211 1121111 1122   11222       


Q ss_pred             CCCCEEEEcCCCCC--CCC-CC---HHHHHHHHHHHHHHHHHHHHHh
Q 019519           95 EDSDVVIIPAGVPR--KPG-MT---RDDLFNINAGIVKDLCSAIAKY  135 (340)
Q Consensus        95 ~~aDiVi~~ag~~~--~~g-~~---r~~~~~~N~~i~~~i~~~i~~~  135 (340)
                      ...|+||+++|...  ... .+   ..+.+..|+.....+.+.+..+
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~  130 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ  130 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            25799999998532  111 12   2445667777666666666543

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.015  Score=53.81  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------CC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~   96 (340)
                      +++|.|+||+|.+|++++..|+..|.  +|++++.+....  .++.... ..++.... +-+|   +.+.+       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999998887  899999865211  1222111 11122111 1112   11222       25


Q ss_pred             CCEEEEcCCCCCC---CCCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           97 SDVVIIPAGVPRK---PGMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        97 aDiVi~~ag~~~~---~g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      .|+||+++|....   ...+.   ...+..|+.-...+.+.+..+   ...+.+|++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence            8999999986421   12222   233567776666666654332   22345666664

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0061  Score=54.41  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccccc-------cCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLGQA-------LEDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~~a-------l~~a   97 (340)
                      .++|.|+||+|.+|+.++..|++.+.  +++++|.+..  .....++..... ..+.... ...++.++       +...
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADAL-RIGGIDLVDPQAARRAVDEVNRQFGRL   83 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcCc-eEEEeecCCHHHHHHHHHHHHHHhCCc
Confidence            45899999999999999999998887  8999998752  122223332211 1111110 11112222       2368


Q ss_pred             CEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           98 DVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        98 DiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      |+||+.+|.....   ..+.   .+.+..|......+++.+.++   .+...+++++.
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            9999998753211   1122   233445655555555544322   23456665554

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.99  E-value=0.0024  Score=52.61  Aligned_cols=102  Identities=23%  Similarity=0.302  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ..+||+|||+ |.||.+++..|...++  +|.-+-... ..-+.++.+...  ....    .++.+.+++||+++++.  
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~~--~~~~----~~~~~~~~~aDlv~iav--   76 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFIG--AGAI----LDLEEILRDADLVFIAV--   76 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC--T--T---------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-cccccccccccc--cccc----cccccccccCCEEEEEe--
Confidence            4589999998 9999999999999887  665554322 222233333221  1221    23467789999999985  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--C-CCcEEEEe--cCCCCccHHH
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--C-PNAIVNMI--SNPVNSTVPI  154 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~-p~a~viv~--tNP~d~~t~~  154 (340)
                      |            .  ..+.++++++..+  . |+.+|+=.  +-+++++..+
T Consensus        77 p------------D--daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   77 P------------D--DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             -------------C--CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             c------------h--HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence            2            1  2456777777766  2 44333322  3446677664

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.99  E-value=0.0036  Score=58.76  Aligned_cols=74  Identities=24%  Similarity=0.422  Sum_probs=51.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc--C
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP--A  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~--a  104 (340)
                      .||+|+|+ |.+|.++++.|...+ +.+|.++|++.  ++..+.++.+......+..   ..++++.++++|+||.+  +
T Consensus       128 k~vlIlGa-GGaaraia~aL~~~G-~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~---~~~~~~~~~~aDiVInaTp~  202 (284)
T PRK12549        128 ERVVQLGA-GGAGAAVAHALLTLG-VERLTIFDVDPARAAALADELNARFPAARATA---GSDLAAALAAADGLVHATPT  202 (284)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhCCCeEEEe---ccchHhhhCCCCEEEECCcC
Confidence            59999998 999999999998877 36899999986  3444555544321112222   13344578899999997  5


Q ss_pred             CCC
Q 019519          105 GVP  107 (340)
Q Consensus       105 g~~  107 (340)
                      |++
T Consensus       203 Gm~  205 (284)
T PRK12549        203 GMA  205 (284)
T ss_pred             CCC
Confidence            654

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.014  Score=53.71  Aligned_cols=113  Identities=14%  Similarity=0.032  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------cCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LEDS   97 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~~a   97 (340)
                      ++|.|+||+|++|+.++..|+..+.  .+.+++.+...  ..++.... ..++.... +-+|.   .++       +...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999998887  78888876411  11221111 11222221 11222   111       2457


Q ss_pred             CEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        98 DiVi~~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      |+||+++|......   .+   -...+..|......+.+.+..+   ...+.++++|.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS  135 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS  135 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence            99999998753221   12   2334556777777777665322   22345555553

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.98  E-value=0.0043  Score=60.15  Aligned_cols=68  Identities=21%  Similarity=0.292  Sum_probs=45.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .||+|||. |.+|.+++..|...++  ++.++|.+........-.....   +..  ..+++.+++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---IDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Ccc--cccCHHHHhcCCCEEEEeC
Confidence            37999998 9999999999998887  7888888763221111111111   111  1245567889999999985

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.97  E-value=0.0045  Score=61.59  Aligned_cols=64  Identities=25%  Similarity=0.398  Sum_probs=46.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+||||+|.+|..++..|...++  +|.++|.++..  ..+.++       .+..   .++..+++.+||+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~-------gv~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL-------GVEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc-------CCee---ccCHHHHhccCCEEEEec
Confidence            6899998559999999999998887  89999987522  122211       1222   135567789999999985

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.97  E-value=0.011  Score=53.73  Aligned_cols=115  Identities=21%  Similarity=0.250  Sum_probs=66.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEE-ecCCccccc-------cCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQLGQA-------LEDSD   98 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~-~~~~d~~~a-------l~~aD   98 (340)
                      .++.|+||+|.+|..++..|+..+.  +++++|.+..  .....++....  ..+... +...+.+++       +...|
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPAA--IAVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCce--EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            5799999999999999999999887  8999998762  22222232110  011111 011122222       24689


Q ss_pred             EEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCC
Q 019519           99 VVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNP  147 (340)
Q Consensus        99 iVi~~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP  147 (340)
                      ++|+.+|.... +  ..+   -...+..|..-...+.+.+..+    .+.+.+++++..
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  141 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQ  141 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCH
Confidence            99999886421 1  112   2334566666665565555432    234667666653

>PRK08643 acetoin reductase; Validated

Probab=96.97  E-value=0.061  Score=48.79  Aligned_cols=116  Identities=23%  Similarity=0.290  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------cC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~   95 (340)
                      .++.|+||+|.+|.+++..|+..+.  +++++|.+..  .....++.+..  .++.... +-+|.   .+.       +.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999998887  8999998752  22233343321  1222211 11121   111       23


Q ss_pred             CCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~-~--g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      +.|+||+++|.... +  ..+.   ...+..|+.-.    +.+.+.+.+..+++.++++|...
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~  141 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQA  141 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccc
Confidence            68999999986421 1  1111   22344555443    34444444434456777776543

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.95  E-value=0.0039  Score=56.92  Aligned_cols=112  Identities=19%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCce-EEEEe-c-CCcccccc-CCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-VAGYM-G-NDQLGQAL-EDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~-v~~~~-~-~~d~~~al-~~aDiVi  101 (340)
                      .+++||.|+||+|++|+.++..|+..++  +|+.+..+...... .+.... ... +.... . ..++.+++ .++|+||
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~-~~~~~~-~~~~~~~Dl~d~~~~l~~~~~~~~d~vi   90 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKT-SLPQDP-SLQIVRADVTEGSDKLVEAIGDDSDAVI   90 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHH-hcccCC-ceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence            3468999999999999999999998887  78777654321111 111110 011 11111 1 01233556 6899999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (340)
                      +++|.....+.  ...+..|......+++.+.+.... .++.+
T Consensus        91 ~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~i  130 (251)
T PLN00141         91 CATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILV  130 (251)
T ss_pred             ECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence            98875432111  111233444556667777665443 44443

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.031  Score=51.65  Aligned_cols=159  Identities=13%  Similarity=0.107  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---------HHHHHHHhcCCCCceEEEEe-cCCc---ccccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al   94 (340)
                      .+++.|+||+|.+|++++..|+..+.  +|+++|.+..         +..+.++....  .++.... +-+|   .++.+
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~   81 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV   81 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence            35899999999999999999998887  8999997641         11222332211  1222111 1112   22222


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHH
Q 019519           95 -------EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEV  158 (340)
Q Consensus        95 -------~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~  158 (340)
                             ...|+||+.+|.....   ..+..   ..+..|+.-...+.+.+..+   ...+.++++|.+.....      
T Consensus        82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------  155 (273)
T PRK08278         82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP------  155 (273)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc------
Confidence                   2679999999863211   22322   23445655555555544332   23467776665432110      


Q ss_pred             HHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       159 ~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                         . +++....++.+.....++-..+++.++  +..|++..+.
T Consensus       156 ---~-~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~  193 (273)
T PRK08278        156 ---K-WFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW  193 (273)
T ss_pred             ---c-ccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence               0 023344566653333456666777765  3556655543

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.94  E-value=0.01  Score=53.53  Aligned_cols=116  Identities=20%  Similarity=0.251  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.++|.|+||+|++|+.++..|+..+.  +|+++|.+..  .....++....  .++.... +-.|   .++++      
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~   77 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQA   77 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346999999999999999999998887  8999998752  22223333221  1222221 1112   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                       ...|+||+.+|.....   ..+.   ...+..|+.....+.+.+..+   .+.+.+++++.
T Consensus        78 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss  139 (250)
T TIGR03206        78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIAS  139 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECc
Confidence             3589999998853211   1222   233556666665555544321   23345555554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PLN02996 fatty acyl-CoA reductase

Probab=96.94  E-value=0.014  Score=58.99  Aligned_cols=107  Identities=18%  Similarity=0.133  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCC----cH-HHHHHHhcCC----------------CCceEEEEe
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN----TP-GVAADVGHIN----------------TRSEVAGYM   85 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~----~~-~~~~dl~~~~----------------~~~~v~~~~   85 (340)
                      .+.|.|+||+||+|++++..|+.. +-+.+|.++....    .. ....++....                ...++....
T Consensus        11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~   90 (491)
T PLN02996         11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVP   90 (491)
T ss_pred             CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEe
Confidence            458999999999999999987764 4456777777643    11 1111111100                012444433


Q ss_pred             cCC----------c-cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 019519           86 GND----------Q-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY  135 (340)
Q Consensus        86 ~~~----------d-~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~  135 (340)
                      +.-          + +++.++++|+||++|+... ...........|+....++.+.+.+.
T Consensus        91 GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         91 GDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             cccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            210          1 2345679999999997543 23345667788999999999988764

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.94  E-value=0.019  Score=52.46  Aligned_cols=114  Identities=17%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccc-------ccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~   95 (340)
                      |++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++.+..   .+.... +-+|   .++       .+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999887  899999875  222233443221   122111 1112   111       134


Q ss_pred             CCCEEEEcCCCCCC-----CCCCHHHH---HHHHH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRK-----PGMTRDDL---FNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~-----~g~~r~~~---~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|+.+|....     ...+..++   +..|.    -+.+.+.+.+.+....+.||++|.-
T Consensus        76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~  139 (259)
T PRK08340         76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSV  139 (259)
T ss_pred             CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence            68999999986421     11222222   22232    2344455555433345677776644

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.93  E-value=0.0069  Score=60.77  Aligned_cols=98  Identities=16%  Similarity=0.239  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC--CceEEEEecCCccccccC---CCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALE---DSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~---~aDiVi~  102 (340)
                      |.+|+|||. |.+|+++|..|+..++  +|.+||+++..  +.++.....  ...+..+   .+++++++   ++|+|++
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~~---~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKGY---HTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCcceec---CCHHHHHhcCCCCCEEEE
Confidence            358999998 9999999999999998  99999987522  112221100  1123332   45556554   5898888


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~  148 (340)
                      ..-               +.+.++++.+.+..+ .|+.++|..+|-.
T Consensus        73 ~v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         73 LIK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             EeC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            741               223444444444443 4677888888754

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.022  Score=51.23  Aligned_cols=117  Identities=16%  Similarity=0.154  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc------
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA------   93 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------   93 (340)
                      ++.++|.|+||+|.+|+.++..|...+.  ++++++.++.  .....++....  .++..+. +-+|.   ++.      
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAA   80 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3457999999999999999999998887  8999987652  22333443222  1232221 11221   111      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           94 -LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        94 -l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                       +.+.|+||+.+|.....   ..+.   ...+..|..-...+.+.+.++   .+.+.++++|.
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence             24789999999864321   1222   223455666555555554432   23456666654

>TIGR01746 Thioester-redct thioester reductase domain

Probab=96.92  E-value=0.0088  Score=56.88  Aligned_cols=114  Identities=12%  Similarity=0.080  Sum_probs=70.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHH-----HHHHhcCC-----CC-ceEEEEecC----------C
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHIN-----TR-SEVAGYMGN----------D   88 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~-----~~dl~~~~-----~~-~~v~~~~~~----------~   88 (340)
                      +|.|+||+|++|++++..|+..+...+|+++........     ...+....     .. .++....+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            588999999999999999998875447888887642111     11111100     00 234443211          1


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++.+..+++|+||++|+... ......++...|+.....+.+.+.+..... ++.+|
T Consensus        81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS  135 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS  135 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence            22344578999999987542 123344566788888888888887765443 34333

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.91  E-value=0.018  Score=53.29  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-c---CCcccc-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-G---NDQLGQ-------A   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~-------a   93 (340)
                      ++..+.|+||++-+|..+|..|+.+++  +|+|+..++  +...+.++++... ..+.... +   .++.+.       .
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~-v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG-VEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC-ceEEEEECcCCChhHHHHHHHHHHhc
Confidence            456999999999999999999999998  999999887  4666677775431 1222211 1   111111       1


Q ss_pred             cCCCCEEEEcCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 019519           94 LEDSDVVIIPAGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (340)
                      .-..|+.|..||...-.      -.+-.+++.-|+.-..++...+-..   +-.+-||+++.-.
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~a  145 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAA  145 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechh
Confidence            12689999999875321      1223466777776555555444432   2356777776544

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.91  E-value=0.021  Score=51.50  Aligned_cols=116  Identities=19%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcc---c-------cccC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL---G-------QALE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~al~   95 (340)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++++.++.......+....  .++.... +-+|.   .       +.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356999999999999999999999887  899999765322222232221  1222211 11121   1       1224


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tN  146 (340)
                      ..|++|+.+|.....   ..+   -.+.+..|......+.+.+.    +....+.+++++.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            689999999864221   111   22345566555444444443    3333466666654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.014  Score=53.91  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc---------cccC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---------QALE   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---------~al~   95 (340)
                      ...+.|+||+|.+|++++..|+..+.  +|++++.+..  .....++.+.....++.... +-+|.+         +.+.
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   80 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG   80 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence            34789999999999999999998887  8999987652  22222222211112233222 112321         1123


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  146 (340)
                      ..|+||+++|.....   +.+   -.+.+..|......+.+.    +++... +.++++|.
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vsS  140 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINISS  140 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEECc
Confidence            579999999864321   112   123345666555444444    444433 44554543

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.89  E-value=0.0091  Score=54.17  Aligned_cols=111  Identities=13%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEe-cCCc---ccc-------ccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~   95 (340)
                      |+|.|+||+|.+|..++..|...|.  +|+++|.++..  ....++.     .++.... +-+|   .++       .+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~i~~~~~~~~~~~~   73 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWR   73 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999998887  89999987521  1111111     1122111 1111   112       224


Q ss_pred             CCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +.|+||+.+|...  .+  ..+.   ...+..|....    +.+.+.+.+. ..+.++++|..
T Consensus        74 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~  135 (248)
T PRK10538         74 NIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGST  135 (248)
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECCc
Confidence            7999999998642  11  2222   23455565554    4444444332 23566666653

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.89  E-value=0.0061  Score=54.60  Aligned_cols=115  Identities=20%  Similarity=0.309  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (340)
                      ++++|.|+||+|.+|..++..|+..++  +|.+++.++.  .....++....  .++.... +-.|   +.++       
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEA   79 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998887  7999998752  22222333211  1222211 1111   1122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMIS  145 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~t  145 (340)
                      +...|.||+.+|.-...   ..+.   ...+..|......+.+.+..+   .....++++|
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s  140 (246)
T PRK05653         80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS  140 (246)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            23469999998752211   1122   234556666666555555322   2224555555

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.023  Score=51.54  Aligned_cols=115  Identities=15%  Similarity=0.109  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (340)
                      ..+|.|+||+|.+|+.++..|+..+.  +|++++.++  ......++....  .++.... +-+|   ..+.++      
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            46999999999999999999998886  899999875  222233333222  1222221 1111   222232      


Q ss_pred             -CCCEEEEcCCCCCCC----CCCHH---HHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 019519           96 -DSDVVIIPAGVPRKP----GMTRD---DLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~----g~~r~---~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP  147 (340)
                       ..|+||+.+|.....    ..+..   ..+..|+.-...+.    +.+.+. ..+.++++|..
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS~  145 (253)
T PRK06172         83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTASV  145 (253)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECch
Confidence             459999999864221    22222   33455655444333    334322 23556666543

>PRK06924 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.0083  Score=54.28  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++|.|+||+|.+|+.++..|+..+.  +|++++.++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999887  899998765

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.013  Score=53.61  Aligned_cols=103  Identities=15%  Similarity=0.203  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~a  104 (340)
                      ++.+++.|+||+|.+|.+++..|+..|.  +++++|.+........ .+.. ...+.... ...+..+.+...|++|+.|
T Consensus        12 l~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnA   87 (245)
T PRK12367         12 WQGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNH   87 (245)
T ss_pred             hCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECC
Confidence            4457899999999999999999998887  8999987652111111 1111 11122111 1123335567899999999


Q ss_pred             CCCCCCCCCH---HHHHHHHHHHHHHHHHHH
Q 019519          105 GVPRKPGMTR---DDLFNINAGIVKDLCSAI  132 (340)
Q Consensus       105 g~~~~~g~~r---~~~~~~N~~i~~~i~~~i  132 (340)
                      |.......+.   .+.+..|......+++.+
T Consensus        88 G~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  118 (245)
T PRK12367         88 GINPGGRQDPENINKALEINALSSWRLLELF  118 (245)
T ss_pred             ccCCcCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            8643222222   334556665444444443

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.88  E-value=0.018  Score=52.51  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc---cc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---QA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------l   94 (340)
                      .++|.|+||+|.+|++++..|+..+.  +|+++|.+..  .....++....  .++.... +-+|.+   +.       +
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999998887  8999987642  22222232211  1222221 112221   11       2


Q ss_pred             CCCCEEEEcCCCCCCC---CC---CHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GM---TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP  147 (340)
                      ...|+||+++|.....   ..   .-...+..|+.....+.+.+.++    .+.+.++++|..
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~  150 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV  150 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence            3679999998863211   11   12345567887777777766554    234566666653

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.01  Score=52.57  Aligned_cols=75  Identities=20%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCce-EEEEe-cCCccccccC---CCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-VAGYM-GNDQLGQALE---DSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~-v~~~~-~~~d~~~al~---~aDiVi~  102 (340)
                      +++|.|+||+|++|+.++..|+.. .  +|+++|.+...  ..++.+...... +.... ...++.++++   +.|+||+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            468999999999999999998877 5  89999976422  112221110001 11110 0112333343   6999999


Q ss_pred             cCCCC
Q 019519          103 PAGVP  107 (340)
Q Consensus       103 ~ag~~  107 (340)
                      ++|..
T Consensus        78 ~ag~~   82 (227)
T PRK08219         78 NAGVA   82 (227)
T ss_pred             CCCcC
Confidence            99864

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.87  E-value=0.0084  Score=55.36  Aligned_cols=98  Identities=19%  Similarity=0.254  Sum_probs=63.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC-CCCEEEEcCCCCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGVPRK  109 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVi~~ag~~~~  109 (340)
                      |+|+|++|+||+++...|...++  +|.++-.+......  ..+    ..+...   +.+.+... ++|+||.+||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~----~~v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLH----PNVTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcC----cccccc---chhhhcccCCCCEEEECCCCccc
Confidence            67999999999999999999888  88888776522111  111    112211   11223333 79999999998743


Q ss_pred             CC----CCHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 019519          110 PG----MTRDDLFNINAGIVKDLCSAIAKYCPNA  139 (340)
Q Consensus       110 ~g----~~r~~~~~~N~~i~~~i~~~i~~~~p~a  139 (340)
                      ..    +-...+.+--+...+.+.+.|.+.....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P  103 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP  103 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence            22    1233445556777888888888765443

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.86  E-value=0.011  Score=53.19  Aligned_cols=114  Identities=21%  Similarity=0.247  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEec-CCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al-------   94 (340)
                      .++|.|+||+|.+|..++..|+..+.  +|++++.+..  .....++....  .++..... -.|   +.+.+       
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999998887  8999998752  22222333221  12332221 111   12222       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  146 (340)
                      ...|+||+++|.... +  ..+.   ...+..|+.-...+.+.+    .+.. ...++++|.
T Consensus        82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss  142 (251)
T PRK12826         82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS  142 (251)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence            368999999876432 1  2222   234556666555555544    3333 345555543

>PLN02256 arogenate dehydrogenase

Probab=96.85  E-value=0.008  Score=56.96  Aligned_cols=66  Identities=21%  Similarity=0.269  Sum_probs=45.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcccccc-CCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVi~~a  104 (340)
                      .+++||+|||+ |.+|..++..|...+.  +|..+|.+.....+.++   .    +..+   ++.++.+ .++|+||++.
T Consensus        34 ~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~~---~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         34 SRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSFF---RDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Ceee---CCHHHHhhCCCCEEEEec
Confidence            55689999997 9999999999987775  89999987522222221   1    1122   3444544 4799999985

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=96.85  E-value=0.01  Score=62.12  Aligned_cols=89  Identities=18%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcccccc--CCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al--~~aDiVi~~a  104 (340)
                      +.|||.|+||+|++|++++..|...++  ++.+. ..       |+.+..            .+...+  .+.|+||++|
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~~-------~l~d~~------------~v~~~i~~~~pd~Vih~A  436 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-KG-------RLEDRS------------SLLADIRNVKPTHVFNAA  436 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCC--eEEee-cc-------ccccHH------------HHHHHHHhhCCCEEEECC
Confidence            458999999999999999999887775  55211 10       011000            011112  2689999999


Q ss_pred             CCCCCC--C---CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 019519          105 GVPRKP--G---MTRDDLFNINAGIVKDLCSAIAKYCP  137 (340)
Q Consensus       105 g~~~~~--g---~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (340)
                      +....+  +   ....+.+..|+.....+++.+++.+.
T Consensus       437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~  474 (668)
T PLN02260        437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL  474 (668)
T ss_pred             cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence            864322  1   24566778999999999999998754

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.85  E-value=0.0052  Score=57.71  Aligned_cols=65  Identities=22%  Similarity=0.272  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ++||+|||. |.+|+.++..+...++  +|.++|.+.....  .+....    +..   .+++.+++++||+||++.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~--~~~~~g----~~~---~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVA--EVIAAG----AET---ASTAKAVAEQCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            369999997 9999999999998887  8999998752211  122111    111   134567789999999985

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.82  E-value=0.02  Score=52.11  Aligned_cols=116  Identities=22%  Similarity=0.227  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (340)
                      ++.+++.|+||+|.+|++++..|+..+.  +|+++|.++. .....++....  .++.... +-+|.   .+.       
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEA   81 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            4456899999999999999999999887  8999998752 22222332221  1222111 11221   122       


Q ss_pred             cCCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +...|++|+.||...  .+  ..+.   ...+..|+-    ..+.+.+.+.+.. .+.|+++|.
T Consensus        82 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS  144 (260)
T PRK12823         82 FGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSS  144 (260)
T ss_pred             cCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcC
Confidence            236799999997531  11  1222   222334443    4455666665443 345666654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.82  E-value=0.014  Score=58.75  Aligned_cols=140  Identities=18%  Similarity=0.186  Sum_probs=83.0

Q ss_pred             ccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEecCCc
Q 019519           13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQ   89 (340)
Q Consensus        13 ~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~~d   89 (340)
                      +.|+|-+.+.... +..||.|+|+ |.+|..+|..|...|.  ++.++|..+.   ......|....    +....+. +
T Consensus         2 ~~~~~~~~~~~~~-~~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~-~   72 (480)
T PRK01438          2 SRPPGLTSWHSDW-QGLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALG----ATVRLGP-G   72 (480)
T ss_pred             CcccchhhcccCc-CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcC----CEEEECC-C
Confidence            4678877776643 4569999998 9999999988888887  8999996541   11122243322    2233222 1


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC--SAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~--~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      . +...++|+||.+.|++..... ....-..+++++.+.-  -.+.+...+..+|-+|=..+  +.+.+++.+++..|
T Consensus        73 ~-~~~~~~D~Vv~s~Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         73 P-TLPEDTDLVVTSPGWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             c-cccCCCCEEEECCCcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            1 235679999999887632211 1111234555554322  22221112445666766665  67777777787766

>PLN00016 RNA-binding protein; Provisional

Probab=96.82  E-value=0.0071  Score=58.83  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.8

Q ss_pred             CCeEEEE----cCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVL----GAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~Ii----GaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++||.|+    ||+|++|++++..|+..++  +|++++.+.
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            4799999    9999999999999998887  999999865

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.82  E-value=0.023  Score=51.07  Aligned_cols=118  Identities=18%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +..++.|+|++|.+|..++..|+..+.  +|++++.+..  .....++....  .++.... +-+|   +.+++      
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNE   81 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998887  8999998752  22223333211  2333222 1112   12222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (340)
                       .+.|+||+++|.....   +.+.   ...+..|..-...+.+.+..+   ...+.+++++...
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~  145 (239)
T PRK07666         82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA  145 (239)
T ss_pred             cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence             3799999999864321   1222   233455665444444444332   2234555565543

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.086  Score=47.97  Aligned_cols=118  Identities=20%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.+.+.|+||+|.+|..++..|+..|.  +|+++|.++  .+....++.......++.... +-+|   ..+++      
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999887  899999875  233333443211112222221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCC--C-CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRK--P-GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~--~-g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       ...|++|+.+|....  . ..+.   ...+..|....    +...+.+.+. ..+.||++|..
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  146 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAST  146 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECCh
Confidence             368999999986421  1 1122   22344455444    4444444433 34566666543

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.81  E-value=0.011  Score=55.28  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCC--cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~--~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |+||+|||+ |.+|++++..|...+.  ..+|.++|.+... ....+....  ..+...   .|..+.++++|+||++.-
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~--~~~~~~---~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY--PTVELA---DNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc--CCeEEe---CCHHHHHhhCCEEEEecC
Confidence            469999997 9999999999887762  2489999876421 112222111  112222   344567899999998852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                                      ...+.++++.+..+- ++..+|.+.|-++
T Consensus        74 ----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~  102 (277)
T PRK06928         74 ----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVS  102 (277)
T ss_pred             ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                            123445555555443 4566766666654

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.012  Score=55.07  Aligned_cols=118  Identities=14%  Similarity=0.127  Sum_probs=70.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---ccccc----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (340)
                      ++.++|.|+||+|.+|++++..|+..+.  ++++++.++.   ......+....  .++.... +-+|   +.+.+    
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~  119 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETV  119 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence            3456899999999999999999998887  8999988751   22222232211  1222211 1111   11222    


Q ss_pred             ---CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 019519           95 ---EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP  147 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP  147 (340)
                         ...|+||+.+|....  +  ..+.   ...+..|+.....+.+.+.++ .+.+.+|++|.-
T Consensus       120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~  183 (290)
T PRK06701        120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI  183 (290)
T ss_pred             HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence               357999999886321  1  1222   345677877777777777654 345666666653

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.80  E-value=0.0052  Score=59.92  Aligned_cols=53  Identities=23%  Similarity=0.455  Sum_probs=42.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ++||+||||.|.+|.+++..|...++  +|.++|.+..                      ++.++++++||+||++.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            36999999559999999999999887  8999996420                      12346688999999985

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.019  Score=52.63  Aligned_cols=117  Identities=18%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc---cc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---QA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------   93 (340)
                      +.+++.|+||+|++|.+++..|+..|.  +|+++|.+..  .....++....  .++.... +-+|.+   ++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999998887  9999998752  22233333211  1222221 112221   11       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  147 (340)
                      +...|+||+.+|.....   ..+   ....+..|......+.+..    .+..+.+.+++++.-
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~  148 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISST  148 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccc
Confidence            23689999999853221   122   2234455655555554444    333455667777653

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.016  Score=53.77  Aligned_cols=115  Identities=18%  Similarity=0.185  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (340)
                      .+.+.|+||+|.+|++++..|+..|.  +|++.|.++  ......++....  .++.... +-+|   +.+.       +
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999887  899999875  222233343222  1222221 1112   1122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tN  146 (340)
                      ...|++|+.+|.....   ..+.   ...+..|.....    .+.+.+.+....+.+++++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3579999999864211   2222   233455554444    44444444443466666654

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.77  E-value=0.024  Score=59.58  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      ..++|.|+||+|.+|+.++..|+..|.  +|++.|.+.  ......++........+.... +-+|   ..++++     
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~  490 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA  490 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999998887  899999875  222223332111001111111 1122   222332     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 019519           96 --DSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                        +.|+||+.+|.....   ..+..   ..+..|..    +.+...+.+.+....+.++++|.
T Consensus       491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS  553 (676)
T TIGR02632       491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS  553 (676)
T ss_pred             cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence              689999999864321   11211   12223332    34455566655544555665543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.77  E-value=0.0057  Score=57.34  Aligned_cols=63  Identities=22%  Similarity=0.336  Sum_probs=45.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ||+|||. |.+|+.++..|+..++  +|.++|.+...  ...+.+...   . .   .++..+++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~---~-~---~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA---V-T---AETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC---c-c---cCCHHHHHhcCCEEEEec
Confidence            6999998 9999999999998887  89999987522  122232221   1 1   124467889999999985

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.11  Score=47.83  Aligned_cols=116  Identities=22%  Similarity=0.178  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCC-ce-EEEEecCCcc----------cccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SE-VAGYMGNDQL----------GQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~-~~-v~~~~~~~d~----------~~al   94 (340)
                      +++.|+||+|.+|..++..|+..+.  +|++++.++  ......++...... .. +...  -+|.          .+.+
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D--~~~~~~~~~~~~~~~~~~   76 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALD--ISDYDAVAAFAADIHAAH   76 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEee--CCCHHHHHHHHHHHHHhc
Confidence            3799999999999999999998886  799999865  22223333322111 01 1111  1111          1223


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~  148 (340)
                      ...|+||+.+|.....   ..+.   ...+..|..-...+.+.+    .+....+.+++++...
T Consensus        77 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         77 GSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            4689999999864221   1222   234556666555555443    3333346677666543

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.74  E-value=0.022  Score=56.11  Aligned_cols=102  Identities=19%  Similarity=0.249  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCc-eEEEEe-cCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS-EVAGYM-GNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~-~v~~~~-~~~d~~~al~~aDiVi~~a  104 (340)
                      ++++|.|+||+|.+|++++..|+..|.  +++++|.++.. ....+.+..... .+.... +.++..+.+.+.|++|+.+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            356899999999999999999998887  89999876421 111121111111 111111 1122334567899999998


Q ss_pred             CCCCCCCCCH---HHHHHHHHHHHHHHHHH
Q 019519          105 GVPRKPGMTR---DDLFNINAGIVKDLCSA  131 (340)
Q Consensus       105 g~~~~~g~~r---~~~~~~N~~i~~~i~~~  131 (340)
                      |.......+.   ...+..|......+.+.
T Consensus       254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a  283 (406)
T PRK07424        254 GINVHGERTPEAINKSYEVNTFSAWRLMEL  283 (406)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8653323332   23455566544444443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.0027  Score=57.56  Aligned_cols=72  Identities=24%  Similarity=0.354  Sum_probs=46.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcCCCCceEEEEe-cCCccccc-cCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYM-GNDQLGQA-LEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~~~~~~v~~~~-~~~d~~~a-l~~aDiVi~~ag  105 (340)
                      |+++|+|+ |.+|+++|..|...++  +++++|.++.. ...  +.+.....-+.+.. ...-++++ +.++|++|.+-|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~--~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEF--LADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHH--hhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            68999998 9999999999999998  99999998621 111  11111011122211 11122333 689999999754

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.73  E-value=0.0092  Score=57.21  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...++|+|||. |.+|+.++..|...+.  +|+.||.+....  .+.        +..   ..++.+++++||+|++..-
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~~---~~~l~ell~~aDiVil~lP  207 (330)
T PRK12480        144 VKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LTY---KDSVKEAIKDADIISLHVP  207 (330)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hhc---cCCHHHHHhcCCEEEEeCC
Confidence            35579999998 9999999999887776  999999764211  010        111   1356788999999999752


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ..           ..+..++.  .+.+....|++++|+++--.
T Consensus       208 ~t-----------~~t~~li~--~~~l~~mk~gavlIN~aRG~  237 (330)
T PRK12480        208 AN-----------KESYHLFD--KAMFDHVKKGAILVNAARGA  237 (330)
T ss_pred             Cc-----------HHHHHHHh--HHHHhcCCCCcEEEEcCCcc
Confidence            11           11222221  12333334788888876543

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.73  E-value=0.014  Score=52.32  Aligned_cols=115  Identities=23%  Similarity=0.331  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccc-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------A   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a   93 (340)
                      +.+++.|+||+|.+|+.++..|+..+.  .+.+.+.+..  .....++.     .++.... +-+|   +.+       .
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD   77 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            456999999999999999999998886  7888776542  22222221     1122211 1112   111       1


Q ss_pred             cCCCCEEEEcCCCCCCC---CC---CHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 019519           94 LEDSDVVIIPAGVPRKP---GM---TRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~---~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (340)
                      +...|+||+.+|.....   ..   .-...+..|......+++.+.+.   .+.+.+++++...
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  141 (245)
T PRK12936         78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV  141 (245)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence            34689999999864321   11   12334556666555555544322   2345666666543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.69  E-value=0.016  Score=53.99  Aligned_cols=67  Identities=10%  Similarity=0.217  Sum_probs=46.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC--cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~--~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +||+|||+ |.+|++++..|...++  ..+|..+|.++..  ...+.+.. .  +...   ++..+.+++||+||++.
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY-G--ITIT---TNNNEVANSADILILSI   71 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEe
Confidence            58999997 9999999999988774  3579999876422  22232211 1  2222   23456789999999985

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.026  Score=51.82  Aligned_cols=117  Identities=20%  Similarity=0.213  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (340)
                      ..+|.|+||+|.+|+.++..|+..+.  +|+++|.+..  .....++....  .++.... +-+|   +.++       +
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  8999997652  22222333211  1121111 1111   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~  148 (340)
                      ...|++|+.+|.....   ..+..   ..+..|..-...+.+....+  .+++.++++|.+.
T Consensus        85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            3569999998753211   22222   23445665555555444332  1346777777654

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.038  Score=50.35  Aligned_cols=34  Identities=35%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++|.|+||+|.+|..++..|+..+.  +|+++|.+.
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999998887  899999875

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.031  Score=50.42  Aligned_cols=115  Identities=19%  Similarity=0.158  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc---c-------cc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---Q-------AL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~-------al   94 (340)
                      .+++.|+||+|.+|.+++..|+..+.  +|+++|.++.  .....++.+..  .++.... +-+|..   +       .+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999998887  8999998752  22222332211  1111111 112221   1       12


Q ss_pred             CCCCEEEEcCCCCC----CC--CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPR----KP--GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~----~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  146 (340)
                      ...|+||+++|...    .+  ..+.   ...+..|......+.+.+.++.   +.+.++++|.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  145 (250)
T PRK07774         82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSS  145 (250)
T ss_pred             CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEec
Confidence            36899999998632    11  1222   2344566666666555555442   2356666653

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.67  E-value=0.0078  Score=56.71  Aligned_cols=64  Identities=19%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +||+|||. |.+|..++..|+..++  +|.++|+++..  ..++....    ...   .+++.+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence            59999998 9999999999998887  89999987522  22232211    111   134467789999999984

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.67  E-value=0.014  Score=52.17  Aligned_cols=115  Identities=21%  Similarity=0.262  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---cccc-----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-----   93 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-----   93 (340)
                      +++++|.|+||+|.+|+.++..|.+.++  ++.+......   .....++....  .++.... +-.|   +.+.     
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~   79 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAV   79 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHH
Confidence            3456999999999999999999999887  6666554431   11222222211  1222221 1111   1122     


Q ss_pred             --cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 019519           94 --LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMIS  145 (340)
Q Consensus        94 --l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~t  145 (340)
                        +.+.|+||+++|.....   +.+.   ...+..|......+.+.+    ++.. ...++++|
T Consensus        80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~S  142 (249)
T PRK12825         80 ERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNIS  142 (249)
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEC
Confidence              24679999999853221   1222   334555666555555555    4333 33455454

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=96.66  E-value=0.0045  Score=57.72  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=59.3

Q ss_pred             EEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEcCCCCCC-
Q 019519           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRK-  109 (340)
Q Consensus        33 IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~ag~~~~-  109 (340)
                      |+||+|++|++++..|...+.  +++++....    ..|+.+            ..++.+.++  +.|+||++|+.... 
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~~   63 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTR------------QADVEAFFAKEKPTYVILAAAKVGGI   63 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCC------------HHHHHHHHhccCCCEEEEeeeeeccc
Confidence            899999999999999988775  555443211    011211            112333333  57999999976421 


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 019519          110 --PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (340)
Q Consensus       110 --~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  141 (340)
                        ......+++..|......+++.+++...+-+|
T Consensus        64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i   97 (306)
T PLN02725         64 HANMTYPADFIRENLQIQTNVIDAAYRHGVKKLL   97 (306)
T ss_pred             chhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEE
Confidence              12334567788999999999999987644333

>PLN02712 arogenate dehydrogenase

Probab=96.65  E-value=0.012  Score=61.57  Aligned_cols=66  Identities=18%  Similarity=0.195  Sum_probs=45.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcccccc-CCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVi~~a  104 (340)
                      .+++||+|||. |.+|..++..|...++  +|..+|.+.....+.++   .    +..+   +|+.+.+ ++||+||++.
T Consensus        50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~~---~d~~e~~~~~aDvViLav  116 (667)
T PLN02712         50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSFF---LDPHDLCERHPDVILLCT  116 (667)
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEEe---CCHHHHhhcCCCEEEEcC
Confidence            46689999997 9999999999988876  89999987422222221   1    2222   3444534 5799999984

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.64  E-value=0.011  Score=54.63  Aligned_cols=91  Identities=13%  Similarity=0.257  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCc--ceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~--~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ..|||+|||+ |.+|++++..|...+..  .+++.+|.++..     +       .+...   .+..+.++++|+||++.
T Consensus         2 ~~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~~---~~~~~~~~~~D~Vilav   65 (260)
T PTZ00431          2 ENIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVYL---QSNEELAKTCDIIVLAV   65 (260)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEEe---CChHHHHHhCCEEEEEe
Confidence            4579999997 99999999999887643  358888865411     0       11221   23356678999999984


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                       .|               ..+.++++.+..+-++..+|.+.+-+.
T Consensus        66 -kp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 -KP---------------DLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             -CH---------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence             12               234444445544333345566666665

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.017  Score=52.45  Aligned_cols=114  Identities=23%  Similarity=0.310  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (340)
                      +.++|.|+||+|.+|++++..|++.+.  +|++.+.+.. .....++...    ++.... +-+|   +.+.       +
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~----~~~~~~~Dl~~~~~~~~~~~~~~~~~   87 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLGG----NAKGLVCDVSDSQSVEAAVAAVISAF   87 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhCC----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            346899999999999999999998887  8999998652 2222222211    111111 1112   1121       2


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      ...|+||+.+|.... +  ..+.   ...+..|..-...+.+.+..+   ...+.++++|.
T Consensus        88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  148 (255)
T PRK06841         88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS  148 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            367999999986431 1  1111   234556666655555555443   22456666654

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.63  E-value=0.0024  Score=57.12  Aligned_cols=105  Identities=18%  Similarity=0.294  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC------cHHHHH---HHhcCC-CCceEEE------EecCCcccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN------TPGVAA---DVGHIN-TRSEVAG------YMGNDQLGQ   92 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~------~~~~~~---dl~~~~-~~~~v~~------~~~~~d~~~   92 (340)
                      -||+|+|. |.+|++.|..++..|+  ++.||||.+      .+....   +|+... ...+++.      .++++++.+
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            49999996 9999999999999999  999999986      122222   333222 1111111      123467777


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccH
Q 019519           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTV  152 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t  152 (340)
                      ..++|=+|-.++              .+.+...+.+.+++++.. |..  |..|.....|.
T Consensus        81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~mp  125 (313)
T KOG2305|consen   81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFMP  125 (313)
T ss_pred             HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccCh
Confidence            777774433332              355677788888888876 443  33555554443

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.083  Score=47.58  Aligned_cols=115  Identities=20%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccc----------cccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG----------QALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al~   95 (340)
                      +++.|+||+|.+|.+++..|+..+.  ++++.+.+.  ......++.......++.... +-+|.+          +.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998886  899999875  222223333211111232221 112221          2234


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  146 (340)
                      ..|+||+.+|......   .+   -...+..|......+.+.+    .+.. ...++++|.
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS  140 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG-SGHLVLISS  140 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEec
Confidence            6899999998643221   11   1223455655444444443    3333 334555543

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.63  E-value=0.037  Score=50.01  Aligned_cols=117  Identities=21%  Similarity=0.228  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCC--c----------cc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND--Q----------LG   91 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~--d----------~~   91 (340)
                      +.++|.|+|++|++|.+++..|+..+.  +|+++|.+.  ......++.+... .++.... +-+  +          +.
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence            346999999999999999999998886  899999875  2233344443321 1111111 000  1          12


Q ss_pred             cccCCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 019519           92 QALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAK---YCPNAIVNMISN  146 (340)
Q Consensus        92 ~al~~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tN  146 (340)
                      +.+...|+||+.+|....  +  ..+.   ...+..|......+.+.+..   ..+.+.++++|.
T Consensus        88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss  152 (247)
T PRK08945         88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS  152 (247)
T ss_pred             HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            233468999999886322  1  2222   23455666654444444432   224456665654

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.0098  Score=54.89  Aligned_cols=111  Identities=14%  Similarity=0.023  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcc---cc-------ccCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL---GQ-------ALEDS   97 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------al~~a   97 (340)
                      +.|.|+||+|.+|++++..|+..+.  +|++.+.+....  .++.+... ..+..+. +-+|.   .+       .+...
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKYG-DRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhcc-CCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999998886  899999765211  11111110 1111111 11121   11       12467


Q ss_pred             CEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 019519           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        98 DiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |.||+++|.....   ..+   -...+..|+.-    .+.+.+.+++.... .+|++|
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs  135 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS  135 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            9999999875321   112   23345566655    45555555554433 455554

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.62  E-value=0.015  Score=54.47  Aligned_cols=65  Identities=25%  Similarity=0.328  Sum_probs=48.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +||++||- |.+|+.++..|...|+  ++..+|.+..+. +..+.....  ...     .+..++.++||+||...
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga--~~a-----~s~~eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA--TVA-----ASPAEAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC--ccc-----CCHHHHHHhCCEEEEec
Confidence            58999998 9999999999999998  999999876332 222332221  111     23368899999999985

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.61  E-value=0.022  Score=54.14  Aligned_cols=94  Identities=18%  Similarity=0.248  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ....+|+|+|. |.+|+.++..|..-|.  +|..+|......     .  .    +.......++++.+++||+|+++.-
T Consensus       134 l~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~-----~--~----~~~~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        134 REDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW-----P--G----VQSFAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC-----C--C----ceeecccccHHHHHhcCCEEEECCC
Confidence            34579999998 9999999999987776  899999643110     0  0    0111112356788999999999842


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ..           ..|..++-  .+.+....|++++||++-
T Consensus       200 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~aR  227 (312)
T PRK15469        200 NT-----------PETVGIIN--QQLLEQLPDGAYLLNLAR  227 (312)
T ss_pred             CC-----------HHHHHHhH--HHHHhcCCCCcEEEECCC
Confidence            21           12223332  334454557899988853

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.017  Score=53.41  Aligned_cols=112  Identities=12%  Similarity=0.063  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcccccc--------CCCCE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQAL--------EDSDV   99 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al--------~~aDi   99 (340)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+.+....  .++..... ..+.... ...++++++        ...|+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence            4799999999999999999998887  899999865211  12222111 0111110 001111222        24699


Q ss_pred             EEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 019519          100 VIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       100 Vi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ||+.+|.....   +.+   -...+..|...    .+.+.+.+++.. .+.||++|.
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            99998864321   122   23345566654    566666666543 345666654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.60  E-value=0.029  Score=54.30  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHH----------HH----hcCCCCceEEEEecCCcccccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----------DV----GHINTRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~----------dl----~~~~~~~~v~~~~~~~d~~~al   94 (340)
                      ++|+|+|- |.||..+|..++..|+  .++=+|+++..-..+          ++    ...-...+++.+   +|. +.+
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraT---td~-~~l   82 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRAT---TDP-EEL   82 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEe---cCh-hhc
Confidence            79999998 9999999999999998  899999986211000          01    111113456664   465 557


Q ss_pred             CCCCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE--ecCCCCccHHHH
Q 019519           95 EDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM--ISNPVNSTVPIA  155 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv--~tNP~d~~t~~~  155 (340)
                      +.||++|++.=.|.+. .+..       +..+..-++.|.++=.++-+++  .|-|.+..-.++
T Consensus        83 ~~~dv~iI~VPTPl~~~~~pD-------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~  139 (436)
T COG0677          83 KECDVFIICVPTPLKKYREPD-------LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV  139 (436)
T ss_pred             ccCCEEEEEecCCcCCCCCCC-------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence            8999999997666544 2323       3334444555555543333333  466766554443

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.015  Score=52.30  Aligned_cols=117  Identities=18%  Similarity=0.176  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcccccc---CCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQAL---EDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al---~~aDiVi  101 (340)
                      ++.+++.|+||+|.+|+.++..|+..+.  +|++++.+....  .++.+......+.... ...++.+++   ...|+||
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi   82 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAAL--DRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLV   82 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEE
Confidence            3456999999999999999999998887  899999765211  1222111000111110 111122223   3579999


Q ss_pred             EcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 019519          102 IPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (340)
Q Consensus       102 ~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tN  146 (340)
                      +.+|.....   ..+.   ...+..|..-...+.+.+.+.    +..+.++++|.
T Consensus        83 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         83 NCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            999864321   1222   233456666655555555443    22356666653

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.60  E-value=0.04  Score=50.17  Aligned_cols=117  Identities=19%  Similarity=0.269  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---cccc-------cCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~~   96 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|++++.++.......+....  .++.... +-+|   ..+.       +..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            35889999999999999999999887  899988754322222232211  1222211 1112   2222       235


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .|++|+.+|.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.||+++...
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~  145 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASML  145 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChh
Confidence            79999999864321   1122   223445544    4455555555443346777666543

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.034  Score=49.92  Aligned_cols=115  Identities=16%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCC---cccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GND---QLGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al------   94 (340)
                      ..+|.|+||+|.+|+.++..|+..+.  ++++++.+..   .....++....  .++.... +-+   ++++++      
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  7877765431   22222333221  1232221 111   222333      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (340)
                       ...|+||+.+|.....   ..+   -...+..|+.....+.+.+.+. .+.+.++++|.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence             3689999999864211   111   2234556666555555555433 24567776654

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.59  E-value=0.015  Score=54.82  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=43.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC---CCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVi~~a  104 (340)
                      |||+|||. |.+|+.++..|...++  +|.++|.++...  .++.+..    +...   .++.+.++   ++|+|+++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~~~---~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEAV--EALAEEG----ATGA---DSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHCC----Ceec---CCHHHHHhhcCCCCEEEEEe
Confidence            58999998 9999999999998887  899999875222  2222221    1111   23344444   479988874

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.031  Score=50.69  Aligned_cols=111  Identities=15%  Similarity=0.090  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCC---cccccc-------C
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQAL-------E   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al-------~   95 (340)
                      +.+++.|+||+|.+|..++..|+..+.  +|+++|.+...    ...  .  ..+.... +-.   ++++.+       .
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~--~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   74 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD--G--RPAEFHAADVRDPDQVAALVDAIVERHG   74 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc--C--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999998887  89999976422    111  1  1122111 111   222233       3


Q ss_pred             CCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNP  147 (340)
                      ..|+||+.+|.... +  ..+   ....+..|+.....+.+.+..    ....+.+|++|.-
T Consensus        75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~  136 (252)
T PRK07856         75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSV  136 (252)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Confidence            45999999985321 1  112   233455666655555555433    2234667766653

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.58  E-value=0.019  Score=52.18  Aligned_cols=115  Identities=21%  Similarity=0.270  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cc-------cc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQ-------AL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------al   94 (340)
                      ..++.|+||+|.+|.+++..|+..+.  ++++.|.++.  .....++.+...  ++.... +-+|.   .+       .+
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999998887  8999998752  233334443221  222111 11121   11       12


Q ss_pred             CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      ...|+||+.+|.... +  ..+   -...+..|......+.+.+.++   ...+.++++|.
T Consensus        85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK08085         85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS  145 (254)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            357999999986421 1  122   2234556655544444444433   23456666654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.58  E-value=0.045  Score=51.77  Aligned_cols=119  Identities=14%  Similarity=0.102  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      .|||+|+|+ |.||+.++..|...+.  +|.|++....+-.++.-.+..    ............+ .+.....|+||++
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~   77 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA   77 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence            379999998 9999999999998876  899999753111111001100    0000000000011 1234678999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      .-               ... ..+..+.+..+ .+++.++.+-|=++....+.    +.   ++.+++++-
T Consensus        78 vK---------------~~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~----~~---~~~~~v~~g  125 (305)
T PRK05708         78 CK---------------AYD-AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA----AR---VPHARCIFA  125 (305)
T ss_pred             CC---------------HHh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH----Hh---CCCCcEEEE
Confidence            51               111 22334445544 37888888999988765542    22   666777754

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.046  Score=49.55  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cc-------cc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQ-------AL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------al   94 (340)
                      .++|.|+||+|.+|++++..|+..+.  +|+++|.++.  .....++....  .++.... +-+|.   +.       .+
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF   80 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999887  8999998752  22223333211  1122111 11221   11       12


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  146 (340)
                      ...|+||+.+|....  +  ..+.   ...+..|+.-...+.+.+.++-  ..+.+|++|.
T Consensus        81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            468999999986422  1  2222   2335566665555555554431  1246666654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.57  E-value=0.034  Score=50.15  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc----------ccccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (340)
                      ++|.|+||+|++|+.++..|+..+.  +|++++.+..  .....++....  .++.... +-.|.          .+.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG   77 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999998887  8999998752  12222222211  1222211 11221          22346


Q ss_pred             CCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  146 (340)
                      +.|+||+.+|.... +  ..+.   ...+..|......+.+.+    ++.. ...++++|.
T Consensus        78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss  137 (255)
T TIGR01963        78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIAS  137 (255)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            78999999886421 1  1121   233445665544444444    4433 235555553

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12827 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.05  Score=48.82  Aligned_cols=117  Identities=20%  Similarity=0.308  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--c----HHHHHHHhcCCCCceEEEEe-cCCc---ccccc--
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T----PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--   94 (340)
                      ++++|.|+||+|++|+.++..|+..+.  ++++++...  .    .....++....  .++.... +-.|   +++.+  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHH
Confidence            357999999999999999999998887  889987642  1    11112222111  1222221 1112   11222  


Q ss_pred             -----CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHH-H---hCCCcEEEEecCC
Q 019519           95 -----EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIA-K---YCPNAIVNMISNP  147 (340)
Q Consensus        95 -----~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~-~---~~p~a~viv~tNP  147 (340)
                           ...|+||+.+|.....   ..+.   ...+..|......+++.+. .   ......+++++..
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  148 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASV  148 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence                 4689999999864321   1222   2345677777777777765 1   1223455555543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.56  E-value=0.026  Score=49.00  Aligned_cols=33  Identities=36%  Similarity=0.633  Sum_probs=29.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899998 9999999999998875 5899999874

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.033  Score=50.76  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------cC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~   95 (340)
                      ++|.|+||+|.+|+.++..|+..+.  +|+++|.++.  +....++....  .++.... +-.|.   .++       +.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4899999999999999999998887  8999998752  22223343322  1232221 11221   111       23


Q ss_pred             CCCEEEEcCCCCCCC---CC-CH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRKP---GM-TR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~-~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~  148 (340)
                      +.|+||+++|.....   .. +.   ...+..|......+.+.+..+-  ..+.+++++...
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~  139 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA  139 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence            679999998864321   11 22   2335566666666655554321  235666665543

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.044  Score=51.34  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..++|.|+||+|.+|..++..|+..|.  +|+++|.+.
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~   74 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE   74 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            346899999999999999999998887  899999875

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.015  Score=53.28  Aligned_cols=112  Identities=19%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++.     .++.... +-+|   +++.       +
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999887  8999998752  22222221     1122111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKP--GMTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tN  146 (340)
                      ...|++|+.+|.....  ..+.   ...+..|+.-...+.+.+..+  .+.+.+|+++.
T Consensus        79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS  137 (261)
T PRK08265         79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTS  137 (261)
T ss_pred             CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            3679999999864322  2222   233444655444444433322  34566666654

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.05  Score=49.44  Aligned_cols=117  Identities=16%  Similarity=0.123  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-----
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (340)
                      +++..+|.|+||+|.+|..++..|+..+.  ++++.+.++. .....++....  .++.... +-+|   +...+     
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   79 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVA   79 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            34556999999999999999999998887  7888887662 22223333222  1222221 1112   22223     


Q ss_pred             --CCCCEEEEcCCCCCCCC--C---CHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 019519           95 --EDSDVVIIPAGVPRKPG--M---TRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMIS  145 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~g--~---~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~t  145 (340)
                        ...|+||+.+|......  .   .-...+..|......+.+...++-  ..+.+++++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         80 KFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             hcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence              25799999998642221  1   122345566665555555444321  234455444

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.54  E-value=0.0077  Score=50.45  Aligned_cols=118  Identities=17%  Similarity=0.212  Sum_probs=70.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC-----CCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-----NTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~-----~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |+|+|+ |.+|..++..|.+.+.  ++.|++... ......-...     .....+.......+.....+.+|+||++.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789998 9999999999998887  899999754 2221111111     101111111111111135689999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cc
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT  175 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~  175 (340)
                      ..                -..+..+.++.+. |++.++.+-|=++....+.    +.   +++.++++- +.
T Consensus        77 a~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~----~~---~~~~~v~~g~~~  125 (151)
T PF02558_consen   77 AY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA----EY---FPRPRVLGGVTT  125 (151)
T ss_dssp             GG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH----CH---STGSGEEEEEEE
T ss_pred             cc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH----HH---cCCCcEEEEEEe
Confidence            11                1233555566665 6778888899887665442    22   566787654 44

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.53  E-value=0.036  Score=49.57  Aligned_cols=117  Identities=20%  Similarity=0.294  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------   93 (340)
                      +.++|.|+|++|++|+.++..|+..+.  ++++...+..   .....++....  .++.... +-.|   +.++      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346999999999999999999998887  7766665442   12222232211  1222211 1111   1111      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 019519           94 -LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP  147 (340)
Q Consensus        94 -l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP  147 (340)
                       +.+.|+||+++|.....   ..+.   ...+..|......+.+.+..+.   +.+.++++|..
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~  143 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSV  143 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence             23689999998864321   1122   2234567776666666666542   23456655543

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.055  Score=48.98  Aligned_cols=113  Identities=18%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCC---ccccccC-CCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALE-DSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-~aDiVi  101 (340)
                      ++|.|+||+|.+|+.++..|+..+.  ++++.+.+..  .....+......  .+.... +-+   ++..++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            4799999999999999999998886  8888887642  111111111111  122111 112   2233344 899999


Q ss_pred             EcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 019519          102 IPAGVPRKP---GMTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       102 ~~ag~~~~~---g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +.+|.+...   ..+..   ..+..|...    .+.+.+.+.+... +.+|++|.
T Consensus        79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS  132 (257)
T PRK09291         79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS  132 (257)
T ss_pred             ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence            999865321   11221   223344443    3344444444433 56666653

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.53  E-value=0.0013  Score=61.55  Aligned_cols=98  Identities=26%  Similarity=0.271  Sum_probs=58.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||.|+||+|++|+++...|...++  +++.++..+     .|+.+..   .+.      ++-+. .+.|+||++|+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence            7999999999999999999988776  788886542     1222111   000      01111 25789999997642


Q ss_pred             CC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       109 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ..  ..........|......+++...+.  ++.+|.+|
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S  100 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS  100 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence            21  1235566778999999999998876  44555554

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.046  Score=49.48  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEe-CCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D-~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      .++|.|+||+|.+|++++..|+..+.  ++.+.+ .+..  .....++....  .++.... +-+|.   .+++      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            46999999999999999999998886  776654 3321  12222232111  1222211 11221   1112      


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519           95 -------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus        95 -------~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                             .+.|+||+++|.....   ..+.   ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                   2689999999864321   1121   3344567776666666666543 2345555553

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.039  Score=50.64  Aligned_cols=114  Identities=20%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------cC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~   95 (340)
                      ++|.|+||+|.+|+.++..|+..+.  +|++.|.+..  +....++.....  ++.... +-+|.   .+.       +.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999887  8999997652  222233432221  222111 11221   121       23


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|+||+.+|.....   ..+.   ...+..|..    ..+.+.+.+++.. .+.++++|..
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~  137 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASM  137 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            689999999864321   1222   223455644    4444555555443 3456656543

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.038  Score=50.36  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      .+++.|+||+|.+|.+++..|...+.  .+++.+...   ......++.+..  .++.... +-+|   +.+++      
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999988886  787776543   122222232221  2232221 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMIS  145 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~t  145 (340)
                       ...|+||+.+|.....   ..+   -...+..|+.-...+.+.+..+.   ..+.+++++
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~  145 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI  145 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence             3479999999864221   222   23445667665555655555432   234555443

>PRK08589 short chain dehydrogenase; Validated

Probab=96.48  E-value=0.17  Score=46.62  Aligned_cols=116  Identities=18%  Similarity=0.231  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------L   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l   94 (340)
                      +.+++.|+||+|.+|..++..|+..+.  +|+++|.++ ......++.+...  ++.... +-+|.   .+.       +
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNGG--KAKAYHVDISDEQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999998887  899999874 2223334433221  222111 11121   111       2


Q ss_pred             CCCCEEEEcCCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g----~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ...|++|+.+|.....+    .+.   ...+..|+.    +.+.+.+.+.+.  .+.+++++...
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~  143 (272)
T PRK08589         81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFS  143 (272)
T ss_pred             CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchh
Confidence            35799999998743211    122   122334443    445555555433  36777776543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.48  E-value=0.0095  Score=49.42  Aligned_cols=73  Identities=21%  Similarity=0.363  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ..|+.|+|| |.+|..++..|...+. .+|.+++++..  +..+..+.    ...+.... .+++.+.+.++|+||.+-+
T Consensus        12 ~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~----~~~~~~~~-~~~~~~~~~~~DivI~aT~   84 (135)
T PF01488_consen   12 GKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG----GVNIEAIP-LEDLEEALQEADIVINATP   84 (135)
T ss_dssp             TSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT----GCSEEEEE-GGGHCHHHHTESEEEE-SS
T ss_pred             CCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC----ccccceee-HHHHHHHHhhCCeEEEecC
Confidence            469999998 9999999999998864 57999998642  23333331    12333332 2466677899999999865


Q ss_pred             CC
Q 019519          106 VP  107 (340)
Q Consensus       106 ~~  107 (340)
                      .+
T Consensus        85 ~~   86 (135)
T PF01488_consen   85 SG   86 (135)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.013  Score=53.24  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++..+|.|+||+|.+|.+++..++..+.  +++++|.+.
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            3456999999999999999999998887  899999875

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.47  E-value=0.02  Score=50.88  Aligned_cols=37  Identities=27%  Similarity=0.535  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+..||.|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus        19 l~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            44579999998 9999999999998885 6899999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.47  E-value=0.013  Score=54.61  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=43.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||. |.+|.+++..|...++..+|+.+|.++..  ...+.....   +...   .++.+ +.+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~~---~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDEI---VSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Cccc---CCHHH-HhcCCEEEEeC
Confidence            58999997 99999999999988765578889987521  111222111   1111   23334 45699999985

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.057  Score=50.68  Aligned_cols=117  Identities=21%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (340)
                      +.++|.|+||+|.+|+.++..|+..+.  +|++++.+..  .....++.......++.... +-.|.   +++       
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            346899999999999999999998887  8999987652  21222333211111232221 11221   111       


Q ss_pred             cCCCCEEEEcCCCCCCC-C---CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRKP-G---MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~-g---~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +...|+||+.||....+ .   ..-...+..|...    .+.+.+.+++. ..+.||++|.
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS  152 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSS  152 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECC
Confidence            23589999999863211 1   1112234455544    66666666654 3456666654

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.46  E-value=0.037  Score=49.90  Aligned_cols=115  Identities=17%  Similarity=0.293  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      ...+.|+||+|.+|++++..|+..+.  ++++.+...   ......++.+..  .++.... +-+|   +.+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998886  776655432   122223343221  1232221 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                       ...|+||+.+|......      +.-.+.+..|..-...+.+.+..+   ...+.+++++.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             34799999998643211      112344566776666655555543   23456666654

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.06  Score=48.55  Aligned_cols=114  Identities=19%  Similarity=0.158  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCC-ceEEEEe-cCCccccccC----CCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-SEVAGYM-GNDQLGQALE----DSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~-~~v~~~~-~~~d~~~al~----~aDiVi~  102 (340)
                      .++.|+||+|.+|..++..|+..|.  +++++|.++...  .++...... ..+.... ...+.+++++    ..|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            4799999999999999999998887  899999875211  112111100 0111111 1122223333    2478888


Q ss_pred             cCCCCCCC--C-CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519          103 PAGVPRKP--G-MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus       103 ~ag~~~~~--g-~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                      .+|.....  . .+.   ...+.-|......+.+.+..+- +...+++++.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            77743211  1 222   2346677777777777766542 3455665554

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.44  E-value=0.019  Score=52.15  Aligned_cols=118  Identities=12%  Similarity=0.090  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCC---cccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al------   94 (340)
                      +.++|.|+||+|.+|+.++..|+..+.  +|+++|.++  ......++.....  ++.... +-+   ++.+++      
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHh
Confidence            457999999999999999999998887  899999875  2233333432211  122211 111   222222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (340)
                       ...|+||+.+|.....   ..+.   ...+..|..-...+++.+.++   ...+.+++++...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence             3458999998864211   1222   234556666555555444321   2345677676544

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.44  E-value=0.14  Score=46.69  Aligned_cols=156  Identities=14%  Similarity=0.147  Sum_probs=93.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecC-------CccccccCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGN-------DQLGQALEDSD   98 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~-------~d~~~al~~aD   98 (340)
                      +-+.|+||++-+|..++..|...|.  .++|...+.  ++..+.++.+... ...+..+ +.       ..+.+.+.+.|
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVt-D~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVT-DRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccC-CHHHHHHHHHHHHHhhCccc
Confidence            3578889999999999999999998  999999876  4666666764111 1111110 11       11234567899


Q ss_pred             EEEEcCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 019519           99 VVIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (340)
Q Consensus        99 iVi~~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~k  169 (340)
                      ++|..||..+...      .+...++..|+..+......+-..   ...+.||+++.=....          .  +|...
T Consensus        84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~----------~--y~~~~  151 (246)
T COG4221          84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY----------P--YPGGA  151 (246)
T ss_pred             EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc----------c--CCCCc
Confidence            9999999754321      124456777887666655544322   2456888887555322          1  66677


Q ss_pred             eEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          170 LFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       170 viG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      +++-|.--..-|...|-+.+  ..+.|++..+
T Consensus       152 vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I  181 (246)
T COG4221         152 VYGATKAAVRAFSLGLRQEL--AGTGIRVTVI  181 (246)
T ss_pred             cchhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence            77765322222222232222  2466666555

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.43  E-value=0.023  Score=53.55  Aligned_cols=64  Identities=14%  Similarity=0.302  Sum_probs=43.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCC---CCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~---aDiVi~~a  104 (340)
                      |||+|||. |.+|+.++..|...++  +|+++|.++...  ..+.+..    ....   .++++.+++   +|+||++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~~~---~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAV--DVAGKLG----ITAR---HSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC----Ceec---CCHHHHHHhCCCCCEEEEEe
Confidence            58999998 9999999999998887  899999875222  2232221    1211   234555554   68998874

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.41  E-value=0.03  Score=53.06  Aligned_cols=114  Identities=14%  Similarity=0.076  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-------   94 (340)
                      +++|.|+||+|.+|..++..|+..+.  +|++.+.+..  .....++....  .++.... +-+|.   ++++       
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRALG   81 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999998886  8999987652  22223332211  1222211 11221   1222       


Q ss_pred             CCCCEEEEcCCCCCC----CCCCH---HHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEec
Q 019519           95 EDSDVVIIPAGVPRK----PGMTR---DDLFNINAGI----VKDLCSAIAKYCP-NAIVNMIS  145 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~----~g~~r---~~~~~~N~~i----~~~i~~~i~~~~p-~a~viv~t  145 (340)
                      ...|++|+.||....    ...+.   ...+..|...    .+.+.+.+.+... .+.||++|
T Consensus        82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence            248999999985321    12222   2345566654    4444455544432 34566655

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.061  Score=48.46  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-------   94 (340)
                      .+++.|+||+|.+|+.++..|+..+.  ++++++.+..  .....++. .  ..++.... +-+|.   .+++       
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~   79 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARW   79 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  8999987652  22222232 1  11222221 11221   1222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHH----HHHHHHHhCCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKD----LCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tN  146 (340)
                      .+.|+||+.+|.....   ..+..   ..+..|......    +.+.+++.. .+.++++|.
T Consensus        80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS  140 (252)
T PRK06138         80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG-GGSIVNTAS  140 (252)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-CeEEEEECC
Confidence            3789999999864211   12222   234556554443    344444333 345555553

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.037  Score=50.29  Aligned_cols=112  Identities=26%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccccC-------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQALE-------   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al~-------   95 (340)
                      .++.|+||+|.+|..++..|+..+.  +|+++|.+..  .....++.+.    ++.... +-.|.   ..+++       
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGDA----RFVPVACDLTDAASLAAALANAAAERG   76 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC----ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998886  8999997652  2222233211    222111 11222   12232       


Q ss_pred             CCCEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPRKPG---MTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g---~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      +.|+||+.+|......   .+..   ..+..|......+.+.+...   ...+.+++++.
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  136 (257)
T PRK07074         77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGS  136 (257)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence            5799999998642211   1222   22345555444455444322   23455665654

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.024  Score=51.02  Aligned_cols=111  Identities=21%  Similarity=0.223  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc----------ccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG----------QAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al   94 (340)
                      .++|.|+||+|.+|+.++..|+..+.  ++++++.++.  .....++.     .++.... +..|.+          +.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45999999999999999999999887  8999988652  11111121     1222111 112211          123


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMIS  145 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~t  145 (340)
                      ...|+||+.+|.....   ..+.   ...+..|+.....+.+.+..+ ...+.+++++
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~  136 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG  136 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            4689999999864321   1122   234567777777777777643 1223444444

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.054  Score=49.17  Aligned_cols=114  Identities=20%  Similarity=0.217  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccc-------cc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------AL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al   94 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+.+.  .+....++.+..  .++.... +-+|   ..+       .+
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  899999875  223333343322  1222211 1112   111       13


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEec
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~t  145 (340)
                      ...|++|+.+|.....   ..+.   ...+..|+.....+    .+.+.+....+.+++++
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            4789999999864321   1222   22344555544444    44444333345566554

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.38  E-value=0.022  Score=54.09  Aligned_cols=101  Identities=25%  Similarity=0.374  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .++|+|+|+ |.+|..++..|...+ ..+|.++|.+..  ...+..+.     ..+...   +++++++.++|+||.+.+
T Consensus       178 ~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~~---~~~~~~l~~aDvVi~at~  247 (311)
T cd05213         178 GKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVPL---DELLELLNEADVVISATG  247 (311)
T ss_pred             CCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEeH---HHHHHHHhcCCEEEECCC
Confidence            479999998 999999988887644 348999998752  22233222     122211   356677899999999877


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHH
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVP  153 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~  153 (340)
                      .|..            ..++...   ++.. .+..+++-+++|-|+=..
T Consensus       248 ~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~~~  281 (311)
T cd05213         248 APHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIEPE  281 (311)
T ss_pred             CCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCchh
Confidence            6531            1111111   1111 245688889999885543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK09186 flagellin modification protein A; Provisional

Probab=96.38  E-value=0.037  Score=50.11  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .++|.|+||+|.+|.+++..|+..+.  ++++.+.+.
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            46899999999999999999998887  899998765

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.091  Score=49.71  Aligned_cols=171  Identities=14%  Similarity=0.089  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc----------cc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG----------QA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a   93 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.+.++.  .....++.......++.... +-.|+.          +.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999998886  8999988752  22233343211111222221 112211          11


Q ss_pred             cCCCCEEEEcCCCCCCC--CC---CHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 019519           94 LEDSDVVIIPAGVPRKP--GM---TRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~--g~---~r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~  164 (340)
                      ....|++|+.||....+  ..   .-...+..|..    +.+.+.+.+++.  .+.|++++.-......+-..-......
T Consensus        91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~  168 (313)
T PRK05854         91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERS  168 (313)
T ss_pred             CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCccccccccc
Confidence            24589999999863221  11   12233444443    355555555432  355665554322110000000000000


Q ss_pred             CCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       165 ~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      +++...++.+.+....+-..+++.+......|.+..+
T Consensus       169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v  205 (313)
T PRK05854        169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA  205 (313)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence            2333445554444444556666655443444554444

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.36  E-value=0.012  Score=48.68  Aligned_cols=35  Identities=26%  Similarity=0.524  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            359999998 9999999999998875 6999999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06128 oxidoreductase; Provisional

Probab=96.36  E-value=0.081  Score=49.57  Aligned_cols=116  Identities=22%  Similarity=0.232  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc----HHHHHHHhcCCCCceEEEEe-cCCc---ccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------   92 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------   92 (340)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+.+..    ......+....  .++.... +-+|   .++       
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998887  7888765431    12222233221  1222211 1112   111       


Q ss_pred             ccCCCCEEEEcCCCCC--CC--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           93 ALEDSDVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        93 al~~aDiVi~~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                      .+...|++|+.+|...  .+  ..+   -...+..|+.-...+++.+..+- +.+.+|+++.-
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~  193 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSI  193 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCc
Confidence            2346899999998642  21  122   23456678777777777776553 34567766543

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.36  E-value=0.025  Score=49.24  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=61.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||+||||+|.+|+.++.....+|+  |++-+=.+..+-.+.  ..... -+-..+ +.+.+.+++.+-|+||.+-|.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~~i-~q~Dif-d~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGVTI-LQKDIF-DLTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--cccee-eccccc-ChhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999998  888887665221110  10000 001111 11223467899999999876543


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                       ++.  .   ..-.+-...+...++.. -...++++.-
T Consensus        75 -~~~--~---~~~~k~~~~li~~l~~a-gv~RllVVGG  105 (211)
T COG2910          75 -SDN--D---ELHSKSIEALIEALKGA-GVPRLLVVGG  105 (211)
T ss_pred             -CCh--h---HHHHHHHHHHHHHHhhc-CCeeEEEEcC
Confidence             121  1   11122244455555543 3456666643

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.35  E-value=0.082  Score=47.82  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++|.|+||+|++|++++..|+..+.  +++++|...
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4789999999999999999998887  899999754

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.35  E-value=0.046  Score=52.03  Aligned_cols=116  Identities=17%  Similarity=0.247  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe--cCCcc-------ccccC-
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM--GNDQL-------GQALE-   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~--~~~d~-------~~al~-   95 (340)
                      ...+.|+||+|.+|.+++..|+..|.  +|+++|.++  .+....++.......++....  -++|.       .+.+. 
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            35899999999999999999999887  899999876  233344444321111222111  01111       12223 


Q ss_pred             -CCCEEEEcCCCCCC---C--CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecC
Q 019519           96 -DSDVVIIPAGVPRK---P--GMTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN  146 (340)
Q Consensus        96 -~aDiVi~~ag~~~~---~--g~~r---~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tN  146 (340)
                       |.|++|..||....   +  ..+.   ...+..|......+.    +.+.+. ..+.++++|.
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS  193 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGAIINIGS  193 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence             45699999986421   1  2222   234555665444444    444433 3456666654

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.081  Score=48.03  Aligned_cols=117  Identities=13%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcce-EEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~e-l~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------   93 (340)
                      +.++|.|+||+|.+|+.++..|...+.  + |+++|.+..  .....++....  .++.... +-+|.   .+.      
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAADE   80 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            446899999999999999999988876  6 999998652  22222332211  1222211 11221   111      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 019519           94 -LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDL----CSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        94 -l~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP  147 (340)
                       +.+.|+||+++|.....   ..+..   ..+..|..-...+    .+.+.+....+.++++|.-
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~  145 (260)
T PRK06198         81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSM  145 (260)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence             23689999999865322   12222   2345555444444    4444443334566666543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.34  E-value=0.019  Score=48.23  Aligned_cols=72  Identities=22%  Similarity=0.356  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .++|+|+|+ |.+|..++..|...+ ..++.++|.+..  ...+.++....  .....    .+..+.++++|+||.+..
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~Dvvi~~~~   90 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIAY----LDLEELLAEADLIINTTP   90 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--cceee----cchhhccccCCEEEeCcC
Confidence            469999998 999999999998776 458999998752  22232332110  01111    244566899999999865


Q ss_pred             CC
Q 019519          106 VP  107 (340)
Q Consensus       106 ~~  107 (340)
                      .+
T Consensus        91 ~~   92 (155)
T cd01065          91 VG   92 (155)
T ss_pred             CC
Confidence            43

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.31  E-value=0.016  Score=55.04  Aligned_cols=119  Identities=21%  Similarity=0.300  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHH---HHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAA---DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~---dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|+|+ |.||+.+++.|.+.+.  .+.++-..+. +....   .+.+........... .++ .+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence            69999998 9999999999999883  5666654331 11111   011111100111111 122 46678999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceE-eccc
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF-GVTT  175 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kvi-G~~~  175 (340)
                      -                .--..+..+.+..+. |+++|+..-|=.+..-.+     +..  ++.++++ |+|.
T Consensus        76 K----------------a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l-----~~~--~~~~~il~G~~~  125 (307)
T COG1893          76 K----------------AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEEL-----RKI--LPKETVLGGVTT  125 (307)
T ss_pred             c----------------cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHH-----HHh--CCcceEEEEEee
Confidence            2                122345556666665 677888888888766522     222  5555554 6764

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.31  E-value=0.065  Score=48.71  Aligned_cols=117  Identities=17%  Similarity=0.209  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------C
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~   95 (340)
                      +...+.|+|++|.+|.+++..|+..|.  +|+++|..+......++....  .++.... +-+|   ..+.+       .
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFG   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            345899999999999999999998887  888888765322223333211  1222211 1112   12222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|+.+|.....   +.+   -...+..|.....    .+.+.+.+..+.+.++++|.-
T Consensus        85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~  146 (253)
T PRK08993         85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASM  146 (253)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECch
Confidence            689999999874311   122   2234455655444    444444443445777766543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.31  E-value=0.038  Score=49.57  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      +..||+|+|+ |.+|+.++..|+..|. .++.|+|.+
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            3569999998 9999999999998886 589999987

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.30  E-value=0.068  Score=48.54  Aligned_cols=114  Identities=16%  Similarity=0.233  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccc-------cCCCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQA-------LEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~a-------l~~aDi   99 (340)
                      .+++.|+||+|.+|..++..|+..+.  ++++.+.+.. ....++.+... ..+.... ...+..++       +...|+
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999998887  7887765431 11222322111 0111110 11111122       236799


Q ss_pred             EEEcCCCCCC-C--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 019519          100 VIIPAGVPRK-P--GMTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       100 Vi~~ag~~~~-~--g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ||+.+|.... +  ..+..   ..+..|+.-    .+.+.+.+++. ..+.+|++|.
T Consensus        83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS  138 (255)
T PRK06463         83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS  138 (255)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9999987432 1  22222   234445544    56666666543 3456666654

>PRK12742 oxidoreductase; Provisional

Probab=96.29  E-value=0.051  Score=48.54  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=78.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHh-cCCCCceEEEEecCCcc---ccc---cCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAGYMGNDQL---GQA---LEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~-~~~~~~~v~~~~~~~d~---~~a---l~~aDiV  100 (340)
                      .++|.|+||+|.+|+.++..|+..+.  ++++.+..... ...++. +... ..+..  +.+|.   .+.   +...|++
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~~~-~~~~~--D~~~~~~~~~~~~~~~~id~l   79 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQETGA-TAVQT--DSADRDAVIDVVRKSGALDIL   79 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHhCC-eEEec--CCCCHHHHHHHHHHhCCCcEE
Confidence            46899999999999999999998887  78777654311 111121 1111 01111  11221   122   2457999


Q ss_pred             EEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          101 IIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       101 i~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |+.+|.....   ..+.   ...+..|..-...++..+.++ .+.+.+|+++.-...          ..+ .+....++.
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----------~~~-~~~~~~Y~~  148 (237)
T PRK12742         80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD----------RMP-VAGMAAYAA  148 (237)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc----------cCC-CCCCcchHH
Confidence            9999864321   1221   233455655444444333332 234566666543210          011 333445555


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      +......+-..+++.++  +..|++..+
T Consensus       149 sKaa~~~~~~~la~~~~--~~gi~v~~v  174 (237)
T PRK12742        149 SKSALQGMARGLARDFG--PRGITINVV  174 (237)
T ss_pred             hHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            43333345556666653  344554443

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.29  E-value=0.042  Score=49.59  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=28.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      ++|.|+||+|.+|++++..|+..+.  ++++.+.+
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            5899999999999999999998887  78776643

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.037  Score=50.93  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +++.|+||+|.+|..++..|+..|.  +|++.+.++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998887  899998765

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.28  E-value=0.046  Score=48.99  Aligned_cols=115  Identities=20%  Similarity=0.293  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEE-eCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~-D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +++|.|+||+|.+|+.++..|+..+.  ++++. +.+..  ......+....  .++.... +-+|.   .+.+      
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEK   80 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999988886  77777 87652  22222232211  1232221 11121   1222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  146 (340)
                       ...|+||+.+|.....   ..+.   ...+..|..-...+.+.+..+.   ....+++++.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS  142 (247)
T PRK05565         81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISS  142 (247)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence             2789999998864211   1122   2345566665545554444322   1234555554

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.28  E-value=0.082  Score=49.47  Aligned_cols=67  Identities=27%  Similarity=0.408  Sum_probs=42.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH---HHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +++|+|+|. |.+|..++..|...++  .+.+++.+...+   .+.++.=.  . ...    .....++.++||+||++.
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~--d-~~~----~~~~~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVI--D-ELT----VAGLAEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCcc--c-ccc----cchhhhhcccCCEEEEec
Confidence            579999997 9999999999999998  555666654221   11111100  0 110    011146778999999984

>PLN02712 arogenate dehydrogenase

Probab=96.28  E-value=0.031  Score=58.61  Aligned_cols=66  Identities=21%  Similarity=0.296  Sum_probs=45.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC-CCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVi~~a  104 (340)
                      .+++||+|||. |.+|.+++..|...+.  +|+.+|.+.....+.++   .    +...   +++++.+. ++|+||++.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~~---~~~~el~~~~aDvVILav  433 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSYF---SDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeEe---CCHHHHHhcCCCEEEECC
Confidence            45689999997 9999999999988776  89999987422122211   1    1222   34445554 599999985

>PRK09242 tropinone reductase; Provisional

Probab=96.28  E-value=0.073  Score=48.35  Aligned_cols=117  Identities=14%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc----------ccccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (340)
                      .+++.|+||+|.+|..++..|+..+.  +|++.+.+.  ......++.......++.... +-.|          ..+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998887  899999875  223333443321112232221 1111          11224


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~-~--g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP  147 (340)
                      ...|+||+.+|.... +  ..+.   ...+..|..-...+    .+.+++. +.+.++++|.-
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS~  148 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGSV  148 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECcc
Confidence            567999999986321 1  1222   22344555544444    4444433 34566666543

>PLN02503 fatty acyl-CoA reductase 2

Probab=96.27  E-value=0.056  Score=55.94  Aligned_cols=110  Identities=19%  Similarity=0.123  Sum_probs=69.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCC----c-HHHHHHHhcC----------C------CCceEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIAN----T-PGVAADVGHI----------N------TRSEVAG   83 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~----~-~~~~~dl~~~----------~------~~~~v~~   83 (340)
                      .+.+.|.|+||+||+|..++..|+... -+.+|.++....    + +....++.+.          .      ...++..
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            346899999999999999999888654 456888886643    1 1111111110          0      0123443


Q ss_pred             EecC-C---------ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 019519           84 YMGN-D---------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (340)
Q Consensus        84 ~~~~-~---------d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (340)
                      ..+. +         +++...++.|+||++|+.-. .+.........|+...+++.+.+.+..
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3211 1         12223367999999987542 334556677889999999999887653

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.27  E-value=0.022  Score=54.63  Aligned_cols=92  Identities=21%  Similarity=0.293  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ..++|+|||. |.+|+.++..+...+.  +|..||.........  .. .    +..    .++.+.+++||+|++..  
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-~----~~~----~~l~ell~~aDiV~l~l--  212 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-G----AEY----RPLEELLRESDFVSLHV--  212 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-C----CEe----cCHHHHHhhCCEEEEeC--
Confidence            4579999998 9999999999887776  899999764221111  11 1    111    24678899999999985  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |..+         .+..++-.  +.+....|++++|+++
T Consensus       213 P~t~---------~T~~~i~~--~~~~~mk~ga~lIN~a  240 (333)
T PRK13243        213 PLTK---------ETYHMINE--ERLKLMKPTAILVNTA  240 (333)
T ss_pred             CCCh---------HHhhccCH--HHHhcCCCCeEEEECc
Confidence            2111         11222211  2333345788998885

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.094  Score=47.73  Aligned_cols=115  Identities=23%  Similarity=0.275  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------cC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (340)
                      ..++.|+||+|.+|+.++..|+..+.  +|++++.++. .....++....  .++.... +-+|   +.+.       +.
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGRG--HRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999998887  8999997652 22222222111  1222211 1122   1122       23


Q ss_pred             CCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      ..|+||+.+|.... +  ..+   ....+..|+.....+.+.+..+   ...+.+++++.
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS  141 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS  141 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            56999999986321 1  111   2234556666555555554432   23345665544

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.26  E-value=0.034  Score=50.85  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+++.|+||+|.+|++++..|+..|.  +|+++|.++
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46999999999999999999999887  899999765

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.26  E-value=0.2  Score=45.74  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cc-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQ-------A   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a   93 (340)
                      +..++.|+||+|.+|.+++..|+..+.  ++++.|.++  ......++....  .++.... +-+|.   ++       .
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999998887  899998765  222233333221  1222211 11221   11       1


Q ss_pred             cCCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           94 LEDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~-~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      +...|++|+.+|.... +  ..+.   ...+..|..-    .+.+.+.+.+ ...+.|++++...
T Consensus        85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~  148 (265)
T PRK07097         85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM  148 (265)
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence            2457999999986321 1  1121   2233445443    3344444443 3456677776644

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.25  E-value=0.12  Score=47.07  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCccc---cc-----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQLG---QA-----   93 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-----   93 (340)
                      ++..++.|+||+|.+|..++..|+..+.  .+++.+.++   ......++....  .++.... +-+|.+   +.     
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~   80 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAV   80 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHH
Confidence            3456999999999999999999998886  777776643   122233343221  1222111 112221   11     


Q ss_pred             --cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 019519           94 --LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 --l~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                        +...|++|+.+|.+...   ..+..   ..+..|+.    ..+.+.+.+.+....+.++++|.
T Consensus        81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence              23579999999864321   12222   23455643    33455556665555566666654

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.15  Score=46.51  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccc----------ccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG----------QAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al   94 (340)
                      ...+.|+||+|.+|..++..|+..+.  +|++.+.++  ......++.......++.... +-+|.+          +.+
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999998887  899999875  222233333221111232221 112221          123


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ...|++|+.+|.....   ..+..   ..+..|    ....+.+.+.+++. ..+.|+++|.-
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  147 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNSL  147 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEeccc
Confidence            4579999999864321   11211   222333    33455666666543 34566666543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.23  E-value=0.027  Score=54.75  Aligned_cols=56  Identities=27%  Similarity=0.377  Sum_probs=41.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .++|+|||.+|.+|.+++..|... ...+|.-+|..+               .     ...+..+.+++||+||++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d---------------~-----~~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPAD---------------P-----GSLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCc---------------c-----ccCCHHHHhcCCCEEEEeC
Confidence            369999997799999999999865 233888898631               0     0123457789999999984

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.23  Score=47.51  Aligned_cols=115  Identities=14%  Similarity=0.131  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (340)
                      +..+|.|+||+|.+|..++..|+..|.  +|++++.++  .+....++.....  ++.... +-+|   .+++       
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~   82 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEE   82 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999998887  899999875  2233333432221  222111 1122   2222       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +...|++|+.+|.....   ..+..   ..+..|    +...+.+.+.+.+. ..+.+|+++.
T Consensus        83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS  144 (334)
T PRK07109         83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGS  144 (334)
T ss_pred             CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence            23689999999863211   12221   223333    44555666666544 2456666654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.23  E-value=0.24  Score=45.57  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (340)
                      +.+++.|+||+|.+|++++..|+..+.  +|+++|.++  .+....++.+..  .++.... +-.|   ....       
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILED   84 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998887  899999875  222333343221  1222221 1112   1111       


Q ss_pred             cCCCCEEEEcCCC
Q 019519           94 LEDSDVVIIPAGV  106 (340)
Q Consensus        94 l~~aDiVi~~ag~  106 (340)
                      +...|++|+.+|.
T Consensus        85 ~g~id~li~~ag~   97 (278)
T PRK08277         85 FGPCDILINGAGG   97 (278)
T ss_pred             cCCCCEEEECCCC
Confidence            2478999999885

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.47  Score=43.19  Aligned_cols=37  Identities=32%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG-~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++.+++.|+||+| .+|..++..|+..|.  +|++.|.+.
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~   52 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE   52 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            3456899999877 599999999998887  799998765

>PRK06196 oxidoreductase; Provisional

Probab=96.22  E-value=0.041  Score=51.96  Aligned_cols=112  Identities=20%  Similarity=0.154  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCcc---cc-------cc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQL---GQ-------AL   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~---~~-------al   94 (340)
                      +.++|.|+||+|.+|.+++..|+..+.  +|++.+.+..  .....++....   -+..  +-+|.   ++       .+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~--Dl~d~~~v~~~~~~~~~~~   97 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVML--DLADLESVRAFAERFLDSG   97 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEc--cCCCHHHHHHHHHHHHhcC
Confidence            346899999999999999999999887  8999998752  22222232111   1111  11121   11       12


Q ss_pred             CCCCEEEEcCCCCCCCC----CCHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKPG----MTRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g----~~r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      .+.|++|+.||....+.    ......+..|..    +.+.+.+.+.+.. .+.||++|.
T Consensus        98 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  156 (315)
T PRK06196         98 RRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS  156 (315)
T ss_pred             CCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            46899999998642221    112333445544    4566666665442 456666654

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.21  E-value=0.11  Score=46.74  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEE-eCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~-D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      .+++.|+||+|.+|+.++..|+..+.  ++++. +.+..  +....++....  .++.... +-+|   +..++      
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEE   79 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999998886  76664 43332  22223333222  1222221 1112   11222      


Q ss_pred             -CCCCEEEEcCCCCC-CC--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPR-KP--GMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~-~~--g~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                       ...|+||+.+|... .+  ..+..   ..+..|......+++.+.++   .+.+.++++|.
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS  141 (250)
T PRK08063         80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS  141 (250)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence             35899999987532 11  11222   12345555555555555443   23456666654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.20  E-value=0.047  Score=45.43  Aligned_cols=33  Identities=27%  Similarity=0.600  Sum_probs=29.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899998 9999999999998886 6899999873

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN02928 oxidoreductase family protein

Probab=96.20  E-value=0.022  Score=54.94  Aligned_cols=106  Identities=19%  Similarity=0.188  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHh--cCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG--HINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~--~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ...++|+|+|. |.+|+.++..+..-|.  +|..+|..........+.  ...............++++.++.||+|++.
T Consensus       157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            34579999998 9999999999886665  999999753211111110  000000000000124678899999999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      .  |..+         .|-.++-  .+.+....|.+++||++=-
T Consensus       234 l--Plt~---------~T~~li~--~~~l~~Mk~ga~lINvaRG  264 (347)
T PLN02928        234 C--TLTK---------ETAGIVN--DEFLSSMKKGALLVNIARG  264 (347)
T ss_pred             C--CCCh---------HhhcccC--HHHHhcCCCCeEEEECCCc
Confidence            5  2211         1111221  2444445678999988643

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.19  E-value=0.014  Score=52.46  Aligned_cols=95  Identities=16%  Similarity=0.117  Sum_probs=59.7

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCCCCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAGVPRK  109 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag~~~~  109 (340)
                      |+|+||+|++|++++..|...++  +|..+=.+........|.+... .-+.... ....+.++|+|+|.|+++.+... 
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSH-   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence            78999999999999999998766  7777766653334444554432 1122111 11345678999999999865432 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019519          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (340)
Q Consensus       110 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (340)
                        .       .-.+....++++..+.+-+
T Consensus        77 --~-------~~~~~~~~li~Aa~~agVk   96 (233)
T PF05368_consen   77 --P-------SELEQQKNLIDAAKAAGVK   96 (233)
T ss_dssp             --C-------CHHHHHHHHHHHHHHHT-S
T ss_pred             --h-------hhhhhhhhHHHhhhccccc
Confidence              1       1234455667777766633

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.19  E-value=0.0092  Score=54.83  Aligned_cols=101  Identities=23%  Similarity=0.282  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC----CCc-----ceEEEEeCCC--------cHHHHHHHhcCCCCceEEEEecCCccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIAN--------TPGVAADVGHINTRSEVAGYMGNDQLG   91 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~----~~~-----~el~L~D~~~--------~~~~~~dl~~~~~~~~v~~~~~~~d~~   91 (340)
                      .||++.|| |..|-.++..|...    |+-     ..++|+|.+-        .......+.+........     .++.
T Consensus        26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~-----~~L~   99 (255)
T PF03949_consen   26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDW-----GSLL   99 (255)
T ss_dssp             -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT-------SSHH
T ss_pred             cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccc-----cCHH
Confidence            49999998 99999888777654    653     6899999874        111222333332211111     4688


Q ss_pred             cccCCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519           92 QALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        92 ~al~~a--DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      ++++++  |++|=+.|.+   |           -+.+++.+.|.+++++.+|+-.|||..
T Consensus       100 eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~  145 (255)
T PF03949_consen  100 EAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTP  145 (255)
T ss_dssp             HHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred             HHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCC
Confidence            999999  9999887654   2           355778889999999999999999986

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.19  E-value=0.016  Score=50.95  Aligned_cols=76  Identities=21%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe--cCCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVi~~  103 (340)
                      .+++.|+||+|.+|..++..|...+.  ++.+++.+..  .....++.+.. ...+....  ...++.++++++|+||.+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~a  104 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFAA  104 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence            46999999889999999998888775  8999987642  22222332111 11222211  112334778999998887


Q ss_pred             CCC
Q 019519          104 AGV  106 (340)
Q Consensus       104 ag~  106 (340)
                      ...
T Consensus       105 t~~  107 (194)
T cd01078         105 GAA  107 (194)
T ss_pred             CCC
Confidence            543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.009  Score=54.42  Aligned_cols=111  Identities=15%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcc----------cccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (340)
                      ++.++|.|+||+|.+|+.++..|+..+.  +|++++.++...    +..     ++.... +-.|.          .+.+
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~----~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   75 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDD----LPE-----GVEFVAADLTTAEGCAAVARAVLERL   75 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhh----cCC-----ceeEEecCCCCHHHHHHHHHHHHHHc
Confidence            4457999999999999999999998887  899998764211    110     111110 11111          1223


Q ss_pred             CCCCEEEEcCCCCCCC-C----CC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP-G----MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~-g----~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ...|+||+.+|..... +    .+   -...+..|..    +.+.+.+.+.+.. .+.+|++|...
T Consensus        76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~  140 (260)
T PRK06523         76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTSIQ  140 (260)
T ss_pred             CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEeccc
Confidence            5689999999854211 1    11   2223444544    3445555555443 35666666543

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.21  Score=45.40  Aligned_cols=156  Identities=12%  Similarity=0.120  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--c----HHHHHHHhcCCCCceEEEEe-cCCcc---ccc---
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T----PGVAADVGHINTRSEVAGYM-GNDQL---GQA---   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~----~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a---   93 (340)
                      +.+++.|+||+|.+|.+++..|+..+.  ++++++.+.  .    .....++....  .++.... +-+|.   ++.   
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~   82 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDD   82 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHH
Confidence            346899999999999999999998886  666665432  1    11222232211  1222211 11221   122   


Q ss_pred             ----cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHH
Q 019519           94 ----LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAAEVFKK  161 (340)
Q Consensus        94 ----l~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~~~~~~~  161 (340)
                          +...|++|+.+|.....   ..+   -...+..|......+.+.+.... +.+.++++ +......          
T Consensus        83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~----------  152 (257)
T PRK12744         83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF----------  152 (257)
T ss_pred             HHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc----------
Confidence                23679999999864211   122   22344556665555555554432 33444433 3222110          


Q ss_pred             hCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       162 sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                         .|....++.+......+-+.+++.++  +..|++..+
T Consensus       153 ---~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v  187 (257)
T PRK12744        153 ---TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVTAV  187 (257)
T ss_pred             ---CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEEEE
Confidence               12223445543333456677777775  344554443

>PRK07574 formate dehydrogenase; Provisional

Probab=96.17  E-value=0.031  Score=54.65  Aligned_cols=95  Identities=15%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...++|+|+|. |.+|+.++..|..-+.  +|+.+|........   ....   .+...   .++++.+++||+|++..-
T Consensus       190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~---~~~~---g~~~~---~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEV---EQEL---GLTYH---VSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhh---Hhhc---Cceec---CCHHHHhhcCCEEEEcCC
Confidence            34579999998 9999999999887666  99999976421111   1100   12221   346788999999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ..           ..+-.++-  .+.+....|.+++||++
T Consensus       258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             CC-----------HHHHHHhC--HHHHhcCCCCcEEEECC
Confidence            21           12222221  23344445788998875

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.048  Score=49.93  Aligned_cols=111  Identities=17%  Similarity=0.153  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccC-------CCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALE-------DSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~-------~aDiV  100 (340)
                      .+|.|+||+|.+|++++..|+..+.  +|++.+.+.....  ...+.   ..+.... +..+++++++       ..|+|
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~---~~~~~D~~d~~~~~~~~~~~~~~~g~~d~l   77 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAA--PIPGV---ELLELDVTDDASVQAAVDEVIARAGRIDVL   77 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcc--ccCCC---eeEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence            4899999999999999999998887  8999987641110  00110   0111111 1112223333       46999


Q ss_pred             EEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCC
Q 019519          101 IIPAGVPRKPG---MT---RDDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNP  147 (340)
Q Consensus       101 i~~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP  147 (340)
                      |+++|......   .+   -...+..|..-...+.+    .+.+.+ .+.++++|..
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  133 (270)
T PRK06179         78 VNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSV  133 (270)
T ss_pred             EECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCc
Confidence            99998753221   11   23344555544444444    444443 3456666543

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.16  E-value=0.041  Score=54.70  Aligned_cols=126  Identities=25%  Similarity=0.340  Sum_probs=76.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH---HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      +.++|.|+|+ |.+|..++..|+..|+  +|+++|.+...   ....+|....  .++  .... ...+...++|+||.+
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~--~~~--~~~~-~~~~~~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELG--IEL--VLGE-YPEEFLEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CEE--EeCC-cchhHhhcCCEEEEC
Confidence            3469999998 8899999999999998  99999987522   1122333212  122  2111 112345789999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      +|.+...- .....-+.+++++...+...+.. + ..+|-+|=..+  +.+.+++.+++..|
T Consensus        76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g  134 (450)
T PRK14106         76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAG  134 (450)
T ss_pred             CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            88752211 11112235667766655544432 2 45666766655  56666766676665

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.022  Score=51.09  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ||+.|+||+|.+|+.++..|...+.  +|+++|.++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999998887  899998764

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.15  E-value=0.022  Score=57.22  Aligned_cols=98  Identities=16%  Similarity=0.233  Sum_probs=58.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC-CCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      +|+|||. |.+|.+++..|+..++  +|.++|.+..+  ..++... .....+.......++.+.++++|+|+++.-   
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~---   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK---   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence            4899998 9999999999999998  99999987522  2223321 000012222111233334568999888741   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP  147 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP  147 (340)
                       ++           +.+.++.+.+..+ .++.++|..||-
T Consensus        73 -~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        73 -AG-----------APVDAVINQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             -Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCc
Confidence             11           2223333444444 367788888763

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.15  E-value=0.024  Score=52.82  Aligned_cols=100  Identities=24%  Similarity=0.333  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC----CC-----cceEEEEeCCC--------cHHHHHHHhcCCCCceEEEEecCCccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN----PL-----VSRLALYDIAN--------TPGVAADVGHINTRSEVAGYMGNDQLG   91 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~----~~-----~~el~L~D~~~--------~~~~~~dl~~~~~~~~v~~~~~~~d~~   91 (340)
                      .||+|.|| |..|..++..|...    |+     -..++++|.+-        .......+.+.. . . .   ...++.
T Consensus        26 ~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~-~-~---~~~~L~   98 (279)
T cd05312          26 QRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E-E-K---EGKSLL   98 (279)
T ss_pred             cEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C-c-c---cCCCHH
Confidence            59999998 99999998777653    54     25899999874        111112222211 1 1 1   125788


Q ss_pred             cccC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519           92 QALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        92 ~al~--~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      ++++  ++|++|=+.+.+   |           -+.+++.+.|.++|++.+|+-.|||..
T Consensus        99 e~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          99 EVVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HHHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            9999  999998876544   2           244678888899999999999999975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.017  Score=52.04  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ||+|.|+||+|.+|..++..|+..|.  ++++++.+.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            57999999999999999999998887  899998765

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.14  E-value=0.057  Score=56.01  Aligned_cols=138  Identities=14%  Similarity=0.175  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcc----ccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVi~~  103 (340)
                      ..+|.|+|. |.+|+.++..|...+.  +++++|.|+..  +..+.+... .-+.+.  .+|.    +..+++||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~-~v~~GD--at~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYGY-KVYYGD--ATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCCC-eEEEee--CCCHHHHHhcCCccCCEEEEE
Confidence            369999998 9999999999988887  89999988622  222333221 123332  2222    1346799999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~  182 (340)
                      -+.+           ..|.    .++..+++++|+..++. +.||.+.-      .++..|   .+.++-=+...+..+.
T Consensus       472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~~~------~L~~~G---a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVEAH------ELLQAG---VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHHHH------HHHhCC---CCEEEccHHHHHHHHH
Confidence            5322           2443    35566778889876654 45554311      134555   2444433333333454


Q ss_pred             HHHHHHcCCCCCCCc
Q 019519          183 TFYAGKANVNVAEVN  197 (340)
Q Consensus       183 ~~la~~l~v~~~~v~  197 (340)
                      ...=..+|+++.+++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            555567788776664

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.13  E-value=0.037  Score=50.89  Aligned_cols=68  Identities=21%  Similarity=0.254  Sum_probs=44.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||+ |.+|++++..|...++ ..++.++|.+...  +.++.+..  ..+...   .+..+.+++||+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence            58999997 9999999999987764 3456778765422  22232211  112222   34456678999999986

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.058  Score=48.45  Aligned_cols=115  Identities=20%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc---ccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---QAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~al-------   94 (340)
                      ++++.|+||+|.+|..++..|+.++.  +|+++|.++.  .....++....  .++.... +-+|.+   .++       
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF   81 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998887  8999998752  22222232211  1222211 112221   222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ...|+||..+|.....   ..+   -...+..|+...    +.+.+.+.+. ..+.++++|..
T Consensus        82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  143 (241)
T PRK07454         82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR-GGGLIINVSSI  143 (241)
T ss_pred             CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCcEEEEEccH
Confidence            3589999999864321   122   223344555543    3444444433 23556666543

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.12  E-value=0.08  Score=47.07  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=64.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcccc---ccC--CCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQ---ALE--DSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~---al~--~aDiVi~  102 (340)
                      .++.|+||+|.+|++++..|+..+.  +++++|.+....  .++...... -+.... ...++++   .+.  ..|+||+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            4899999999999999999988876  899999875211  122221110 111110 1111212   122  4799999


Q ss_pred             cCCCCC--C-C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 019519          103 PAGVPR--K-P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (340)
Q Consensus       103 ~ag~~~--~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP  147 (340)
                      ++|...  . +  ..+.   ...+..|..-...+.+.+..+-  ..+.+++++..
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~  131 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR  131 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence            998642  1 1  1122   3345667776666666665432  23455555443

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.12  E-value=0.33  Score=43.44  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.++|.|+||+|.+|.+++..|+..+.  +|++++.++
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            346899999999999999999998887  899999876

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.11  E-value=0.094  Score=49.40  Aligned_cols=82  Identities=22%  Similarity=0.328  Sum_probs=51.5

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---cccc--
Q 019519           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA--   93 (340)
Q Consensus        23 ~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a--   93 (340)
                      ....+.+++.|+||+|.+|..++..|+..|.  ++++.|...   .+..+.++....  .++.... +-+|   ..+.  
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~   82 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVA   82 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHH
Confidence            3334557999999999999999999998887  899998754   222233343221  2232221 1112   1111  


Q ss_pred             ----cCCCCEEEEcCCCCC
Q 019519           94 ----LEDSDVVIIPAGVPR  108 (340)
Q Consensus        94 ----l~~aDiVi~~ag~~~  108 (340)
                          +...|++|+.+|...
T Consensus        83 ~~~~~g~iD~li~nAG~~~  101 (306)
T PRK07792         83 TAVGLGGLDIVVNNAGITR  101 (306)
T ss_pred             HHHHhCCCCEEEECCCCCC
Confidence                236899999999764

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.14  Score=46.71  Aligned_cols=115  Identities=24%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc---c------ccC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---Q------ALE   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~------al~   95 (340)
                      ..+|.|+||+|.+|..++..|+..|.  +|++++.++.  .....++.. .  .++.... +-.|.+   +      .+.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY-P--GRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc-C--CceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            46899999999999999999998887  8999998752  222222311 1  1232221 112221   1      134


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                      ..|+||+++|.....   ..+   -...+..|......+.+.+..+   .+.+.+++++..
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~  140 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST  140 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence            679999999864321   112   1234456666555555555432   223566666553

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.10  E-value=0.046  Score=47.48  Aligned_cols=100  Identities=24%  Similarity=0.393  Sum_probs=61.4

Q ss_pred             CCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        21 ~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +........+|+|+|. |.+|+.++..+..-|.  +|..+|.......  ...+.    .+..    .++++.++.||+|
T Consensus        29 ~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDiv   95 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADIV   95 (178)
T ss_dssp             TTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SEE
T ss_pred             CCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhhh
Confidence            3333445679999998 9999999999987676  9999998763222  11111    1222    3567889999999


Q ss_pred             EEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          101 IIPAG-VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       101 i~~ag-~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ++..- .+...+.-       |.       +.++...+++++||++--
T Consensus        96 ~~~~plt~~T~~li-------~~-------~~l~~mk~ga~lvN~aRG  129 (178)
T PF02826_consen   96 SLHLPLTPETRGLI-------NA-------EFLAKMKPGAVLVNVARG  129 (178)
T ss_dssp             EE-SSSSTTTTTSB-------SH-------HHHHTSTTTEEEEESSSG
T ss_pred             hhhhccccccceee-------ee-------eeeeccccceEEEeccch
Confidence            99753 22222331       11       123334478899988654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08264 short chain dehydrogenase; Validated

Probab=96.10  E-value=0.051  Score=48.65  Aligned_cols=116  Identities=13%  Similarity=0.045  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcccccc---CCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQAL---EDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al---~~aDiVi~~  103 (340)
                      ..+|.|+||+|.+|+.++..|+..+. .+|++++.+......   ..... ..+.... ...++++.+   ...|+||+.
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~---~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~   80 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD---LGPRV-VPLQLDVTDPASVAAAAEAASDVTILVNN   80 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh---cCCce-EEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            45899999999999999999998774 368888876522111   11010 0111111 111222222   358999999


Q ss_pred             CCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 019519          104 AGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (340)
Q Consensus       104 ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (340)
                      +|.....    ..+.   ...+..|..-...+.+.+.+.   ...+.++++|...
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  135 (238)
T PRK08264         81 AGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL  135 (238)
T ss_pred             CCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence            9873211    1222   233455665555555554432   2345666666543

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.17  Score=47.33  Aligned_cols=115  Identities=25%  Similarity=0.278  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEE-ecCCccc---c-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQLG---Q-------A   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~-~~~~d~~---~-------a   93 (340)
                      +..+|.|+||+|.+|..++..|+..|.  +|++.+.++.  +....++...   ..+... .+-+|.+   +       .
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVER   82 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999887  8999998752  2223333321   122211 1112221   1       1


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  146 (340)
                      +...|+||+.+|.....   ..+.   ...+..|......+++.+..+-  ..+.|+++|.
T Consensus        83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            34679999999864311   1222   2334556655555544443321  2456666664

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.09  E-value=0.055  Score=48.59  Aligned_cols=96  Identities=23%  Similarity=0.313  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      +||+|||+ |.+|..+.-.+-... .+.-+.+||.+..+  +..+......+..      +++.+.+.+.|++|.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~~~~~------s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVGRRCV------SDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcCCCcc------ccHHHHhhccceeeeeCC--
Confidence            58999997 999999987776653 35567888877532  2233322211111      345566799999999985  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                                    .+-+++++.++=+.+.|.+|+-++-=+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          4678899999988888988876554444

>PRK05855 short chain dehydrogenase; Validated

Probab=96.09  E-value=0.12  Score=52.42  Aligned_cols=117  Identities=16%  Similarity=0.185  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc---cc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---QA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------   93 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+..  ...+.++.....  ++.... +-+|.+   +.       
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999887  8999998752  222333332211  222211 112221   11       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +...|++|+.||.....   ..+.   ...+..|..    ..+.+.+.+.+.+..+.||++|.-
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~  453 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASA  453 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence            23479999999875321   1222   223445644    444455555555555677777654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.09  E-value=0.2  Score=45.37  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cc-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQ-------A   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a   93 (340)
                      ..++|.|+||+|.+|++++..|...+.  ++++.|.+.  ......++.+...  ++.... +-+|.   .+       .
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~   85 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFALSK   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            357999999999999999999998887  899998765  2222333433211  121111 11121   11       1


Q ss_pred             cCCCCEEEEcCCCCCC--CCCCHHH---HHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRK--PGMTRDD---LFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~--~g~~r~~---~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      +...|++|+.+|....  ...+..+   .+..|+.-...+.+.+..+   ...+.++++|.
T Consensus        86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  146 (255)
T PRK06113         86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS  146 (255)
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            2357999999885321  1233322   2556766655555555422   23345665654

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.08  E-value=0.36  Score=43.97  Aligned_cols=36  Identities=14%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      ++.++|.|+||++.+|..++..|+..+.  +|++.+..
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~   41 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNS   41 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCC
Confidence            4456899999999999999999998887  78877543

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.057  Score=48.93  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.++|.|+||+|.+|++++..|+..+.  +|++.+.++
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456999999999999999999998887  899998875

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.11  Score=47.16  Aligned_cols=156  Identities=15%  Similarity=0.175  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l   94 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+.++  ......++.+..  .++.... +-+|.   ++.       +
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999887  899999865  223333443322  1222221 11121   112       2


Q ss_pred             CCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 019519           95 EDSDVVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        95 ~~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg  163 (340)
                      ...|++|+.+|...  .+  ..+.   ...+..|..    ..+.+.+.+.+. ..+.+++++.....          ..+
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~----------~~~  150 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGH----------TAG  150 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhh----------ccC
Confidence            36899999998631  22  2222   334556664    444555555443 34556656543211          011


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                       .+..-.++.+......+-..+++.++  +..|++..+
T Consensus       151 -~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  185 (254)
T PRK07478        151 -FPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL  185 (254)
T ss_pred             -CCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence             33333444443223345566666653  344554444

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.088  Score=47.60  Aligned_cols=115  Identities=12%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l   94 (340)
                      ..+|.|+||+|.+|.+++..|...|.  .|+++|.+.  ......++.+...  ++.... +-+|.   +++       +
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAGG--KAEALACHIGEMEQIDALFAHIRERH   83 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998887  899999865  2333333433221  111111 11121   111       2


Q ss_pred             CCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      ...|++|+.+|...  .+  ..+.   ...+..|......+.+.+.++   ...+.+++++.
T Consensus        84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  145 (252)
T PRK07035         84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVAS  145 (252)
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECc
Confidence            35799999887421  11  2222   234455655544444444322   23456666654

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.052  Score=48.38  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .++|.|+||+|.+|+.++..|+..+.  ++++++.+.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            46899999999999999999998886  899998765

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.05  E-value=0.24  Score=45.68  Aligned_cols=144  Identities=22%  Similarity=0.180  Sum_probs=74.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ++||+|+|+.|.+|+.++..+...+-+.=+.++|.+.......  .  .  ..+..   .+|+++.++++|+||... .|
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~--~--~~i~~---~~dl~~ll~~~DvVid~t-~p   70 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--G--A--LGVAI---TDDLEAVLADADVLIDFT-TP   70 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--C--C--CCccc---cCCHHHhccCCCEEEECC-CH
Confidence            4799999977999999987776554332344578765211111  1  1  12222   256777778999999664 11


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhH---HHHHH
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV---VRAKT  183 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~---~R~~~  183 (340)
                                     ....+++...-+.+.+.  + +. |.+....-+..+.+.+...  .-++.. ..+..   .++..
T Consensus        71 ---------------~~~~~~~~~al~~G~~v--v-ig-ttG~s~~~~~~l~~aa~~~--~v~~s~n~s~g~~~~~~l~~  129 (257)
T PRK00048         71 ---------------EATLENLEFALEHGKPL--V-IG-TTGFTEEQLAELEEAAKKI--PVVIAPNFSIGVNLLMKLAE  129 (257)
T ss_pred             ---------------HHHHHHHHHHHHcCCCE--E-EE-CCCCCHHHHHHHHHHhcCC--CEEEECcchHHHHHHHHHHH
Confidence                           22245555555555432  2 33 3332222111112221101  122332 22222   34555


Q ss_pred             HHHHHcCCCCCCCceeEEEecCC
Q 019519          184 FYAGKANVNVAEVNVPVVGGHAG  206 (340)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~  206 (340)
                      .+++.|+  +  .+..++--|+.
T Consensus       130 ~aa~~l~--~--~d~ei~E~HH~  148 (257)
T PRK00048        130 KAAKYLG--D--YDIEIIEAHHR  148 (257)
T ss_pred             HHHHhcC--C--CCEEEEEccCC
Confidence            6666665  2  67778888886

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.05  E-value=0.071  Score=48.50  Aligned_cols=115  Identities=17%  Similarity=0.197  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-------   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-------   95 (340)
                      ..+|.|+||+|.+|..++..|+..|.  .+++++.++ .+.....+....  .++.... +-+|   ..+.++       
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG   90 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999998887  889998764 222222222211  1222221 1122   112222       


Q ss_pred             CCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|+++|.... +  ..+   ....+..|+.....+.    +.+.+. ..+.+++++..
T Consensus        91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  151 (258)
T PRK06935         91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQ-GSGKIINIASM  151 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhc-CCeEEEEECCH
Confidence            67999999986421 1  122   2233455555544444    444333 24566666654

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.03  E-value=0.022  Score=53.67  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=45.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||. |.+|+.++..|...++  ++.++|+++. .  .++....    ....   .+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~-~--~~~~~~g----~~~~---~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV-A--DELLSLG----AVSV---ETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh-H--HHHHHcC----Ceec---CCHHHHHhcCCEEEEeC
Confidence            48999997 9999999999999887  8899998652 1  2232211    1111   23457789999999984

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.03  E-value=0.018  Score=54.05  Aligned_cols=78  Identities=21%  Similarity=0.361  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHH-----------HHhcCCCCceEEEEecCCcccccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAA-----------DVGHINTRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~-----------dl~~~~~~~~v~~~~~~~d~~~al   94 (340)
                      ++||+-||| |.||...+..++..=.--++.++|++..+  ++--           |.-......++- +  ++|.+.++
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-f--stdiekai   76 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-F--STDIEKAI   76 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-e--ecchHHHh
Confidence            469999998 99997665444433222389999998621  1100           010000112333 3  36889999


Q ss_pred             CCCCEEEEcCCCCCC
Q 019519           95 EDSDVVIIPAGVPRK  109 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~  109 (340)
                      +.||+|++..-.|.|
T Consensus        77 ~eadlvfisvntptk   91 (481)
T KOG2666|consen   77 KEADLVFISVNTPTK   91 (481)
T ss_pred             hhcceEEEEecCCcc
Confidence            999999998776654

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=96.03  E-value=0.067  Score=50.56  Aligned_cols=104  Identities=17%  Similarity=0.102  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-----cHHHHHHHhcCCCCceEEEEec-CCc---ccccc--CCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL--EDS   97 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al--~~a   97 (340)
                      ..|.|+||+|++||+.+..|...++  +++++|...     .-.....+.+..  ..|..... -.|   +++.|  ..-
T Consensus         3 ~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~~--~~v~f~~~Dl~D~~~L~kvF~~~~f   78 (343)
T KOG1371|consen    3 KHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGEG--KSVFFVEGDLNDAEALEKLFSEVKF   78 (343)
T ss_pred             cEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCCC--CceEEEEeccCCHHHHHHHHhhcCC
Confidence            5899999999999999999999998  999999754     122223333321  23333221 112   12222  356


Q ss_pred             CEEEEcCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHhC
Q 019519           98 DVVIIPAGVPRK-PG-MTRDDLFNINAGIVKDLCSAIAKYC  136 (340)
Q Consensus        98 DiVi~~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~  136 (340)
                      |-|++.|+.... +. +.+..+...|+--...+.+.+++++
T Consensus        79 d~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   79 DAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             ceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            889998775421 11 2356677889999999999999997

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=96.02  E-value=0.045  Score=48.80  Aligned_cols=114  Identities=20%  Similarity=0.282  Sum_probs=66.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------CC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED   96 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~   96 (340)
                      |.|+|++|.+|+.++..|+.+++  ++++.+.+.   ......++.+...  ++.... +-+|   +.+++       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGV--KALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999998887  899998764   1222333432221  122111 1112   22222       34


Q ss_pred             CCEEEEcCCCCCCC---CC---CHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 019519           97 SDVVIIPAGVPRKP---GM---TRDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPV  148 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~---~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP~  148 (340)
                      .|+||+.+|.....   +.   .....+..|......+.+.+..+.   ..+.++++|...
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  137 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV  137 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence            69999998864211   11   123456677777777777665542   234666665543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.01  E-value=0.035  Score=51.81  Aligned_cols=95  Identities=24%  Similarity=0.273  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~ag~  106 (340)
                      |||.|+|+.|++|+.+...+. .+.  +++-.|..+     +|+.+..            .+.+.++  .-|+||++|.+
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            579999999999999987776 334  677666543     2333221            1223344  56999999987


Q ss_pred             CCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ..-..  .++..-+.-|......+++..++.  .+++|-+|
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~--ga~lVhiS   99 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEV--GARLVHIS   99 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHh--CCeEEEee
Confidence            65432  346666788999999999999987  45555554

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.14  Score=46.97  Aligned_cols=112  Identities=21%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCcc----------ccccC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQL----------GQALE   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~----------~~al~   95 (340)
                      .++|.|+||+|.+|..++..|+..+.  .+++.+.++.  .....++.+..   -+..  +-+|.          .+.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~--D~~~~~~~~~~~~~~~~~~~   77 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVV---GGPL--DVTDPASFAAFLDAVEADLG   77 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccce---EEEc--cCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999998887  7999987652  22222222111   0111  11111          12235


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +.|++|+.+|.....   ..+   -...+..|+.    ..+.+.+.+.+. ..+.|+++|.-
T Consensus        78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  138 (273)
T PRK07825         78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASL  138 (273)
T ss_pred             CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence            689999999864321   112   2234455665    344444554433 34567767643

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.19  Score=45.57  Aligned_cols=114  Identities=11%  Similarity=0.112  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccc-------cC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (340)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++....  .++.... +-+|   .++.       +.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999998887  899999875  222233333221  1222221 1122   1111       24


Q ss_pred             CCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  146 (340)
                      ..|+||+.+|.... +  ..+.   ...+..|......+.+.+    .+....+.++++|.
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  138 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA  138 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            67999999875321 1  2222   234455555444444444    33334567777763

>TIGR02415 23BDH acetoin reductases

Probab=95.97  E-value=0.077  Score=47.95  Aligned_cols=112  Identities=20%  Similarity=0.282  Sum_probs=63.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------cCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LED   96 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~~   96 (340)
                      ++.|+||+|.+|..++..|+..+.  ++++++.++.  .....++.+..  .++.... +-+|.   .++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999998887  8999987652  22223333222  1222221 11221   111       235


Q ss_pred             CCEEEEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 019519           97 SDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        97 aDiVi~~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      .|+||+.+|.... +  +.+..   ..+..|..    +++.+.+.+++...++.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            7999999986321 1  22332   23445544    3345555555555456666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.97  E-value=0.048  Score=52.18  Aligned_cols=66  Identities=18%  Similarity=0.206  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +.+||+|||. |.+|.+++..|...++  +++..+.+.....  +.....   .+..    .+..+++++||+|+++.
T Consensus        16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~~---G~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEAD---GFEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHHC---CCee----CCHHHHHhcCCEEEEcC
Confidence            3569999998 9999999999998887  8888776542211  111111   1111    24568899999999985

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.97  E-value=0.009  Score=58.31  Aligned_cols=73  Identities=25%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-c---CCccccccCCCCEEEEcCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVi~~ag~  106 (340)
                      |.|+|+ |.+|+.++..|+......++++.|.+..+..  .+.......++.... +   ..++.+.++++|+||.++|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAE--RLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH--HHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHH--HHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999 9999999999998876569999999862222  122110111222221 1   12355678999999999864

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=95.96  E-value=0.041  Score=51.01  Aligned_cols=96  Identities=16%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCC--cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~--~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ++||++||+ |++|+.++..|...+.  ..+|...|.++.+..  ++.... ....     ++|..++..++|+||++.-
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g~~~-----~~~~~~~~~~advv~LavK   71 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-GVVT-----TTDNQEAVEEADVVFLAVK   71 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-CCcc-----cCcHHHHHhhCCEEEEEeC
Confidence            479999998 9999999999998872  358888887652221  233222 1111     2344688899999999861


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                       |               ..+.+++..++...++..||-+.-.+
T Consensus        72 -P---------------q~~~~vl~~l~~~~~~~lvISiaAGv   98 (266)
T COG0345          72 -P---------------QDLEEVLSKLKPLTKDKLVISIAAGV   98 (266)
T ss_pred             -h---------------HhHHHHHHHhhcccCCCEEEEEeCCC
Confidence             2               45566677777644566666555444

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.33  Score=43.83  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=28.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      .+.+.|+||+|.+|.+++..|+..|.  +|++.+..
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~   37 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGN   37 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCC
Confidence            35899999999999999999998887  78887543

>PRK07985 oxidoreductase; Provisional

Probab=95.94  E-value=0.48  Score=44.29  Aligned_cols=117  Identities=20%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc----HHHHHHHhcCCCCceEEEEe-cCCccc----------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM-GNDQLG----------   91 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d~~----------   91 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.+.++.    +.....+.+..  .++.... +-+|.+          
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~  123 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAH  123 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence            346899999999999999999999887  8888876431    11111122211  1222211 112211          


Q ss_pred             cccCCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           92 QALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        92 ~al~~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                      +.+...|++|+.+|....  +  ..+.   ...+..|+.....+.+.+..+- ..+.||++|..
T Consensus       124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~  187 (294)
T PRK07985        124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI  187 (294)
T ss_pred             HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence            223467999999886321  1  2222   2345667765555555554432 34667776653

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.91  E-value=0.058  Score=50.01  Aligned_cols=68  Identities=19%  Similarity=0.240  Sum_probs=43.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ||||+|||+ |.+|..++..+...+ .+.-+.++|.+...  +.++.+.. .  ...+   +|+++.+.++|+|++++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a   69 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT-G--AKAC---LSIDELVEDVDLVVECA   69 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcC
Confidence            479999997 999999998887653 22235678876422  22222211 1  1222   35566668999999986

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.1  Score=49.85  Aligned_cols=114  Identities=19%  Similarity=0.128  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (340)
                      ...|.|+||+|.+|..++..|+..|.  +|++++.++  .+....++.....  ++.... +-+|   .+++       +
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~~   82 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASFG   82 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999987  899999875  2233333433221  222111 1122   1122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ...|++|..+|.....   ..+   -...+..|....    +...+.+.+. ..+.+|+++.
T Consensus        83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~-~~g~iV~isS  143 (330)
T PRK06139         83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ-GHGIFINMIS  143 (330)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-CCCEEEEEcC
Confidence            4679999999864321   112   123344554433    3444444443 3456666653

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.91  E-value=0.23  Score=44.70  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~   62 (340)
                      ..+|.|+||+|++|++++..|+..+.  ++++...
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            46999999999999999999998887  6666543

>PRK08324 short chain dehydrogenase; Validated

Probab=95.91  E-value=0.069  Score=56.22  Aligned_cols=114  Identities=21%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++|.+..  .....++...   ..+.... +-+|   ..+++       
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999998887  8999998762  2222233321   1122111 1122   12222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tN  146 (340)
                      .+.|+||+++|.....   ..+.   ...+..|.....    ...+.+++....+.+++++.
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            3689999999864321   1222   122344544444    44555554433366666654

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.89  E-value=0.11  Score=48.47  Aligned_cols=121  Identities=18%  Similarity=0.261  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe----cCCccc-------cc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM----GNDQLG-------QA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~----~~~d~~-------~a   93 (340)
                      ..+.|+|+||+.-+|.++|+.++..|.  .++|+....  ++..+.++.......++....    +.++.+       .-
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            457889999999999999999999987  778887654  333334554433211122211    111222       34


Q ss_pred             cCCCCEEEEcCCCCCCCCC----C---HHHHHH----HHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 019519           94 LEDSDVVIIPAGVPRKPGM----T---RDDLFN----INAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~g~----~---r~~~~~----~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~  151 (340)
                      +.+.|+.|..||+.+ .+.    +   ....+.    ..+-..+...+.+++.+ ++.|++++...+-+
T Consensus        89 fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~  155 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM  155 (282)
T ss_pred             cCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc
Confidence            679999999999887 321    1   122223    45678888999999887 89988888777644

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.31  Score=44.67  Aligned_cols=116  Identities=11%  Similarity=0.163  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------CC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ED   96 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------~~   96 (340)
                      ..+.|+||+|.+|..++..|+..|.  +|+++|.+.  ......++.... ..++.... +-+|   .++.+      ..
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4789999999999999999999887  899999875  222233333211 11222211 1112   22222      35


Q ss_pred             CCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           97 SDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .|++|+.+|.+...   ..+..   ..+..|    ....+.+.+.+++. ..+.||++|...
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~-~~g~Ii~isS~~  146 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK-GFGRIIYSTSVA  146 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCcc
Confidence            79999999865321   12222   223334    44567777777654 346677766543

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.88  E-value=0.024  Score=52.84  Aligned_cols=71  Identities=25%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhC-CCcceEE-EEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |+++||+|||. |.+|..++..|... +- .+++ ++|.+...  +.++.......  ..+   +++++.+.++|+|+++
T Consensus         4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~-~el~aV~dr~~~~--a~~~a~~~g~~--~~~---~~~eell~~~D~Vvi~   74 (271)
T PRK13302          4 RPELRVAIAGL-GAIGKAIAQALDRGLPG-LTLSAVAVRDPQR--HADFIWGLRRP--PPV---VPLDQLATHADIVVEA   74 (271)
T ss_pred             CCeeEEEEECc-cHHHHHHHHHHHhcCCC-eEEEEEECCCHHH--HHHHHHhcCCC--ccc---CCHHHHhcCCCEEEEC
Confidence            66789999997 99999999888763 22 2554 78876422  22222111001  111   3456777899999999


Q ss_pred             CC
Q 019519          104 AG  105 (340)
Q Consensus       104 ag  105 (340)
                      +.
T Consensus        75 tp   76 (271)
T PRK13302         75 AP   76 (271)
T ss_pred             CC
Confidence            74

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.12  Score=47.06  Aligned_cols=114  Identities=20%  Similarity=0.259  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (340)
                      ...+.|+||+|.+|++++..|+..+.  ++++.|.++.   .....++.+...  ++.... +-+|   ..++       
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~   83 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAGR--RAIQIAADVTSKADLRAAVARTEAE   83 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999887  8999997642   222333443221  222211 1112   1222       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +..-|++|+.+|.....   ..+.   ...+..|+...    +.+.+.+.+. ..+.++++|.
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS  145 (254)
T PRK06114         84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLEN-GGGSIVNIAS  145 (254)
T ss_pred             cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCcEEEEECc
Confidence            23459999999864321   1121   23344555544    4444444432 3456666654

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.87  E-value=0.051  Score=49.07  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.+++.|+||+|.+|+.++..|+..+.  +++++|.+.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            346899999999999999999998887  899998764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.86  E-value=0.058  Score=51.91  Aligned_cols=37  Identities=19%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+..||.|+|+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus        22 L~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            34569999998 9999999999998885 6999999873

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.86  E-value=0.036  Score=52.27  Aligned_cols=66  Identities=17%  Similarity=0.168  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ..||+|+|+ |.+|..++..|...+.  +|..+|.+. ....+.++   ..  ....   ..++.+.++++|+||.+.
T Consensus       152 g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G~--~~~~---~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        152 GSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---GL--SPFH---LSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---CC--eeec---HHHHHHHhCCCCEEEECC
Confidence            469999998 9999999999988775  999999875 22222221   11  1111   134567789999999985

>PRK06398 aldose dehydrogenase; Validated

Probab=95.85  E-value=0.056  Score=49.38  Aligned_cols=149  Identities=15%  Similarity=0.166  Sum_probs=78.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccc-------cCCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQA-------LEDSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~a-------l~~aD   98 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|.++....     ...   .+.... ...+.+++       +...|
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~-----~~~---~~~~D~~~~~~i~~~~~~~~~~~~~id   74 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYN-----DVD---YFKVDVSNKEQVIKGIDYVISKYGRID   74 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccC-----ceE---EEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            346899999999999999999998887  8999987652110     000   011000 00111122       34689


Q ss_pred             EEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 019519           99 VVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (340)
Q Consensus        99 iVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (340)
                      ++|+.+|.+...   ..+.   ...+..|..-.    +.+.+.+.+ ...+.+|++|.-..           ..+ .+..
T Consensus        75 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~-----------~~~-~~~~  141 (258)
T PRK06398         75 ILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLK-QDKGVIINIASVQS-----------FAV-TRNA  141 (258)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCeEEEEeCcchh-----------ccC-CCCC
Confidence            999999864321   1222   23345565544    444444443 23466666654221           111 3333


Q ss_pred             ceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       169 kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      -.++.+......+-+.++..++  +. |++..+
T Consensus       142 ~~Y~~sKaal~~~~~~la~e~~--~~-i~vn~i  171 (258)
T PRK06398        142 AAYVTSKHAVLGLTRSIAVDYA--PT-IRCVAV  171 (258)
T ss_pred             chhhhhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence            4445432222335566666664  23 655444

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.83  E-value=0.032  Score=53.65  Aligned_cols=77  Identities=18%  Similarity=0.378  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-----c----------------HHH--HHHHhcCCCCceEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----T----------------PGV--AADVGHINTRSEVA   82 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-----~----------------~~~--~~dl~~~~~~~~v~   82 (340)
                      .+..||+|+|+ |.+|+.++..|+..|+ .+|.|+|.+.     .                +..  +..+.......+++
T Consensus        22 L~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         22 IREKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            34569999998 9999999999998885 6899999874     0                011  11222222223444


Q ss_pred             EEecC---CccccccCCCCEEEEcC
Q 019519           83 GYMGN---DQLGQALEDSDVVIIPA  104 (340)
Q Consensus        83 ~~~~~---~d~~~al~~aDiVi~~a  104 (340)
                      .....   .+.++.++++|+||.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcC
Confidence            43211   23456789999999985

>PRK12743 oxidoreductase; Provisional

Probab=95.82  E-value=0.33  Score=44.07  Aligned_cols=115  Identities=20%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCccc---cc-------c
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQLG---QA-------L   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------l   94 (340)
                      .+|.|+||+|.+|+.++..|+..|.  +|++++...   ......++....  .++.... +-+|.+   .+       +
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4899999999999999999999887  888776433   122223333222  1222221 112211   11       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNP  147 (340)
                      ...|+||+.+|.....   +.+   -...+..|......+.+.+.    +....+.+|++|.-
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~  141 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSV  141 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeec
Confidence            3579999998864321   112   12334555555555544433    33334667767653

>PRK08605 D-lactate dehydrogenase; Validated

Probab=95.79  E-value=0.031  Score=53.63  Aligned_cols=65  Identities=29%  Similarity=0.396  Sum_probs=45.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|||. |.+|+.++..|.. ++.-+|..+|.......    ..     .+..   .+++++++++||+|+++.
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~----~~-----~~~~---~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        144 IKDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA----AT-----YVDY---KDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH----Hh-----hccc---cCCHHHHHHhCCEEEEeC
Confidence            35679999998 9999999998843 33338999997642211    10     1111   135678899999999985

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=95.78  E-value=0.53  Score=43.07  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=27.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      .+.|+||+|.+|++++..|+..|.  +|++.+.+
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            688999999999999999999887  88887543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PLN03139 formate dehydrogenase; Provisional

Probab=95.78  E-value=0.048  Score=53.33  Aligned_cols=95  Identities=22%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...++|+|+|. |.+|+.++..|..-+.  +|..+|.........  .+.    .+...   .++++.+++||+|++.. 
T Consensus       197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~~---~~l~ell~~sDvV~l~l-  263 (386)
T PLN03139        197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKFE---EDLDAMLPKCDVVVINT-  263 (386)
T ss_pred             CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Cceec---CCHHHHHhhCCEEEEeC-
Confidence            45679999998 9999999999986665  899999764211111  111    11211   35778899999999974 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                       |..         ..+-.++-  .+.+....|.+++||++
T Consensus       264 -Plt---------~~T~~li~--~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        264 -PLT---------EKTRGMFN--KERIAKMKKGVLIVNNA  291 (386)
T ss_pred             -CCC---------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence             211         11222221  23444455788988875

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=95.78  E-value=0.16  Score=45.36  Aligned_cols=114  Identities=20%  Similarity=0.220  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------c
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (340)
                      .+|.|+|++|.+|++++..|...+.  .+++.|.++.   ......+...  ..++.... +-.|   ..++       +
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGNDCAKDWFEEYGFT--EDQVRLKELDVTDTEECAEALAEIEEEE   78 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhhcc--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4889999999999999999998886  8999988742   1111111111  11232221 1112   1111       2


Q ss_pred             CCCCEEEEcCCCCCC---CCCC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRK---PGMT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~---~g~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP  147 (340)
                      ...|++|+.+|....   ...+   -...+..|+.....+    .+.+++. +.+.++++|..
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~  140 (245)
T PRK12824         79 GPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV  140 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence            358999999886421   1122   223345566555444    4444433 34567767654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.75  E-value=0.077  Score=47.71  Aligned_cols=35  Identities=29%  Similarity=0.558  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..++.|+|++|.+|+.++..|+..+.  .++++|.++
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999998886  899999875

>PRK08177 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.057  Score=48.14  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +++.|+||+|.+|+.++..|+..|.  +|+++|.+.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999998887  899999876

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.14  Score=46.67  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-----
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (340)
                      .++|.|+||+|.+|.+++..|+..+ .  .|++.+.++.   .....++..... .++.... +-+|   .++.+     
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence            3589999999999999999988874 5  8999988752   222334433211 1222211 1112   11112     


Q ss_pred             -CCCCEEEEcCCCCCCCCC---CH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKPGM---TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~g~---~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                       .+.|++|..+|.......   +.   .+.+..|..    +.+.+.+.+.+... +.++++|.
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS  146 (253)
T PRK07904         85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS  146 (253)
T ss_pred             cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence             379999998876532211   11   123555554    33556666665543 45555553

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.73  E-value=0.043  Score=53.14  Aligned_cols=71  Identities=20%  Similarity=0.272  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHH-hCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMK-LNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~-~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +||+|+||+|.||+.+...|. +..+ ..+++++...+..+........  ...+...   ++ .+++++.|+|++++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~~---~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQDA---FD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEcC---cc-cccccCCCEEEEcCC
Confidence            489999999999999998888 5554 4788999865422221111111  1133321   11 247899999999876

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.72  E-value=0.047  Score=50.61  Aligned_cols=33  Identities=12%  Similarity=0.269  Sum_probs=29.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ||.|+||+|++|++++..|+..++  +|..+..+.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~   33 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS   33 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            589999999999999999998887  888888765

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.72  E-value=0.068  Score=48.36  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+..||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus        19 L~~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          19 LKNARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             HhCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            34569999997 9999999999998885 6999999764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=95.71  E-value=0.35  Score=43.10  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=43.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc------cccccCCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ------LGQALEDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d------~~~al~~aDiVi  101 (340)
                      |+|+|+||+|.+|+.++..|+..+....+++.+.+....    ..+    .++.... +-+|      +.+.+...|+||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998875333666666543211    111    1222111 1111      122356889999


Q ss_pred             EcCCCC
Q 019519          102 IPAGVP  107 (340)
Q Consensus       102 ~~ag~~  107 (340)
                      +.+|..
T Consensus        73 ~~aG~~   78 (235)
T PRK09009         73 NCVGML   78 (235)
T ss_pred             ECCccc
Confidence            999875

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.71  E-value=0.23  Score=46.48  Aligned_cols=117  Identities=19%  Similarity=0.345  Sum_probs=75.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc----------cccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a   93 (340)
                      ....|.|+||++-+|..+|..++..+-  .++|.|++.  ....+..+.+..   ++..+. +-+|          .++.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e  111 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE  111 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence            456899999977899999999998886  899999997  344444444331   222222 1122          2345


Q ss_pred             cCCCCEEEEcCCCC-CCCC--CCHHHH---HHH----HHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519           94 LEDSDVVIIPAGVP-RKPG--MTRDDL---FNI----NAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        94 l~~aDiVi~~ag~~-~~~g--~~r~~~---~~~----N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      ..+.|++|..||+. -++-  .++.++   +.-    -..+++.+.+.|.+. .++.|+.++.-.+
T Consensus       112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~aG  176 (300)
T KOG1201|consen  112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASVAG  176 (300)
T ss_pred             cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhhhc
Confidence            67999999999963 3332  233222   222    345788888998865 4677776654443

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=95.69  E-value=0.042  Score=52.55  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=48.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+++|||+ |..|...+..+.....+.+|.++|.+.  .+..+.++.+.  ...+...   .|.++++++||+|+++-
T Consensus       129 ~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~~---~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       129 SVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRAA---TDPREAVEGCDILVTTT  200 (325)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEEe---CCHHHHhccCCEEEEec
Confidence            59999997 999987665555444578999999986  33334444432  2234433   46689999999999853

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.69  E-value=0.027  Score=51.70  Aligned_cols=120  Identities=21%  Similarity=0.270  Sum_probs=77.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC---------cceEEEEeCCCc--H------HHHHHHhcCCCCceEEEEecCCccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL---------VSRLALYDIANT--P------GVAADVGHINTRSEVAGYMGNDQLG   91 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~---------~~el~L~D~~~~--~------~~~~dl~~~~~~~~v~~~~~~~d~~   91 (340)
                      .||+|.|| |..|..++..|.....         -..++++|..-.  .      .....+.+.... . .   ...|+.
T Consensus        26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-~-~---~~~~L~   99 (254)
T cd00762          26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANP-E-R---ESGDLE   99 (254)
T ss_pred             cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCc-c-c---ccCCHH
Confidence            59999998 9999999877765321         138999998641  1      111111111111 0 1   125788


Q ss_pred             cccC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC---ccHHHHHHHHHHhCCCC
Q 019519           92 QALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN---STVPIAAEVFKKAGTYN  166 (340)
Q Consensus        92 ~al~--~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d---~~t~~~~~~~~~sg~~~  166 (340)
                      ++++  ++|++|=+.+.|   |           -+.+++.+.|.++|++.+|+-.|||..   ....-+   ++.+   .
T Consensus       100 eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a---~~~t---~  159 (254)
T cd00762         100 DAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEA---YTAT---E  159 (254)
T ss_pred             HHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHH---Hhhc---C
Confidence            9999  999999877655   2           345678888889999999999999985   333322   4433   1


Q ss_pred             CCceEecc
Q 019519          167 EKKLFGVT  174 (340)
Q Consensus       167 ~~kviG~~  174 (340)
                      ...+|+..
T Consensus       160 G~ai~AtG  167 (254)
T cd00762         160 GRAIFASG  167 (254)
T ss_pred             CCEEEEEC
Confidence            24677773

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=95.68  E-value=0.035  Score=51.86  Aligned_cols=68  Identities=22%  Similarity=0.383  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .++|..||- |.+|++++..|+..++  .|+.||++.  ....++.+...  ++..     .+.+..++||+||...+.|
T Consensus        35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~Ga--~v~~-----sPaeVae~sDvvitmv~~~  102 (327)
T KOG0409|consen   35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAGA--RVAN-----SPAEVAEDSDVVITMVPNP  102 (327)
T ss_pred             cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhch--hhhC-----CHHHHHhhcCEEEEEcCCh
Confidence            579999998 9999999999999999  999999864  33345555442  3321     2467789999999976543

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.62  Score=42.30  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc------cccCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG------QALEDSD   98 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~------~al~~aD   98 (340)
                      .+++.|+|++|.+|..++..|+..+.  +|++.|.+..  .....++.... ..++.... +-+|.+      +.+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            46899999999999999999998887  8999998752  22222333211 11222211 111211      1245799


Q ss_pred             EEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 019519           99 VVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        99 iVi~~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ++|+.+|.... +  ..+.   ...+..|+.    +.+.+.+.+.+. ..+.++++|.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~iss  140 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVIG  140 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence            99999986421 1  1222   223445555    444444555443 2356666654

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.64  E-value=0.035  Score=45.31  Aligned_cols=71  Identities=30%  Similarity=0.376  Sum_probs=42.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHH---hcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV---GHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl---~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |||+|+|++|.+|+.++..+...+-..=+..+|.+.....-.|+   .... ...+..   ++|+++.++.+|+||-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v---~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPV---TDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Cccccc---chhHHHhcccCCEEEEc
Confidence            69999998899999999988885432224566665411111122   2111 122222   25778889999988876

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.61  E-value=0.1  Score=46.64  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..+|.|+||+|.+|+.++..|+..+.  +|++.+.++
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35999999999999999999998887  899999875

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=95.60  E-value=0.34  Score=43.52  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=27.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~   62 (340)
                      ++|.|+||+|.+|+.++..|+..+.  ++++.+.
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            5899999999999999999998886  7777654

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.59  E-value=0.049  Score=49.72  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+++.|+||+|.+|+.++..|+..|.  +|+++|.++
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999998887  899999875

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.58  E-value=0.11  Score=51.90  Aligned_cols=127  Identities=17%  Similarity=0.295  Sum_probs=76.1

Q ss_pred             CCeEEEEcCCCChHHH-HHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~-~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      .+||.|+|. |..|.+ +|..|...|.  +|...|.+... ...+|....    +..+.+. + .+.++++|+||...|+
T Consensus         7 ~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~~~-~-~~~~~~~d~vv~spgi   76 (461)
T PRK00421          7 IKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFIGH-D-AENIKDADVVVYSSAI   76 (461)
T ss_pred             CCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeCCC-C-HHHCCCCCEEEECCCC
Confidence            458999998 989988 7888888888  99999987532 122344322    2222121 2 3557899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNE  167 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg~~~~  167 (340)
                      |...-. ......++++++.+.-- +.+..++..+|-+|=..+  +.|.+++++++.+| +.+
T Consensus        77 ~~~~~~-~~~a~~~~i~i~~~~e~-~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g-~~~  136 (461)
T PRK00421         77 PDDNPE-LVAARELGIPVVRRAEM-LAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG-LDP  136 (461)
T ss_pred             CCCCHH-HHHHHHCCCcEEeHHHH-HHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC-CCC
Confidence            753221 11122345555543222 122222223555655554  67777777788777 433

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.58  E-value=0.058  Score=51.36  Aligned_cols=73  Identities=30%  Similarity=0.401  Sum_probs=47.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHH-HHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ++||+|+||.|.||+.+...|.... .+.++.++=..+..|.. .+...-..  .+...  ..| ...++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~--~~~-~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPED--AAD-EFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCccc--ccc-ccccccCCEEEEeCc
Confidence            4699999999999999999998844 56778887665433332 33332111  11110  022 245779999999986

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.57  E-value=0.067  Score=56.77  Aligned_cols=92  Identities=21%  Similarity=0.329  Sum_probs=58.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .||+|||+ |.+|..++..+...++..+|..+|.++.. ..+.++   ..  ...   ..+++.++++++|+||++... 
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~---g~--~~~---~~~~~~~~~~~aDvVilavp~-   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL---GV--IDR---GEEDLAEAVSGADVIVLAVPV-   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC---CC--CCc---ccCCHHHHhcCCCEEEECCCH-
Confidence            59999997 99999999999887754479999987622 222221   11  001   123556778999999998521 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (340)
                                     ..+.++++.+..+. ++.+++.++
T Consensus        74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 ---------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                           23455555665554 455554443

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.56  E-value=0.048  Score=52.24  Aligned_cols=71  Identities=17%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ++|+|+|+ |..|...+..+.....+.+|.++|.+.  .+..+.++.+.. ...+..+   .|+++++++||+||.+-
T Consensus       133 ~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~~---~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        133 SRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTVA---RDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEEe---CCHHHHHccCCEEEEee
Confidence            59999998 988888777666433367999999875  333444443221 1233332   56788899999998864

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.24  Score=45.77  Aligned_cols=112  Identities=19%  Similarity=0.221  Sum_probs=61.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccc------cCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------LEDS   97 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------l~~a   97 (340)
                      .+.|+|| |.+|..++..|. .+.  +|++.|.++.  .....++....  .++.... +-+|   .+++      +...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4556676 899999999885 565  8999998752  22223333221  1222211 1112   1111      2468


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                      |++|+.||.... ...-...+..|+.-...+.+.+..+- +.+.+++++...
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            999999987521 23344556677766555555554431 234445555443

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.54  E-value=0.064  Score=52.05  Aligned_cols=72  Identities=21%  Similarity=0.286  Sum_probs=43.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhC-CC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLN-PL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~-~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |+||+|+||+|.||..+...++.. .+ ..+++++.....-+...++...  ...+..   ..| .+.++++|+|+++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~--~~~v~~---~~~-~~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK--EGTLQD---AFD-IDALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC--cceEEe---cCC-hhHhcCCCEEEECCC
Confidence            479999999999999999755544 44 4678887654321111122211  112211   122 245789999999875

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.53  E-value=0.085  Score=47.79  Aligned_cols=97  Identities=23%  Similarity=0.376  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcc--eEEEEeCCC----cHH-----HHHHHhcCCCCceEEEEecCCccccccCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIAN----TPG-----VAADVGHINTRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~--el~L~D~~~----~~~-----~~~dl~~~~~~~~v~~~~~~~d~~~al~~   96 (340)
                      ..||.|+|| |..|..++..|...|. +  +|.++|.+.    .+.     ...++.+.......     ..++.+++++
T Consensus        25 ~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~-----~~~l~~~l~~   97 (226)
T cd05311          25 EVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKT-----GGTLKEALKG   97 (226)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcc-----cCCHHHHHhc
Confidence            359999998 9999999999987765 4  899999983    111     11222221100011     1245678899


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      +|+||-+-+    +|+-.           .+..+.|   +++.+++..+||..
T Consensus        98 ~dvlIgaT~----~G~~~-----------~~~l~~m---~~~~ivf~lsnP~~  132 (226)
T cd05311          98 ADVFIGVSR----PGVVK-----------KEMIKKM---AKDPIVFALANPVP  132 (226)
T ss_pred             CCEEEeCCC----CCCCC-----------HHHHHhh---CCCCEEEEeCCCCC
Confidence            999999764    24311           1223333   46778878889974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.52  E-value=0.087  Score=48.17  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +..||+|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus        23 ~~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            3569999998 9999999999998885 6999999874

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.51  E-value=0.051  Score=47.90  Aligned_cols=83  Identities=20%  Similarity=0.250  Sum_probs=52.7

Q ss_pred             cCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccCC
Q 019519           19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        19 ~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~   96 (340)
                      ..|..-.....+|+|||.+..||..++..|+..+.  .+.++|++...  .....+.|....  ...  -+.++.+.++.
T Consensus        53 ~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t~--~~~--~~~~l~~~~~~  126 (197)
T cd01079          53 ILPYGNRLYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKHH--VTD--EEAMTLDCLSQ  126 (197)
T ss_pred             ccccCCCCCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccccccccccc--ccc--hhhHHHHHhhh
Confidence            33333344567999999988999999999998875  89999976511  000011121110  000  00125577899


Q ss_pred             CCEEEEcCCCC
Q 019519           97 SDVVIIPAGVP  107 (340)
Q Consensus        97 aDiVi~~ag~~  107 (340)
                      ||+||.+.|.|
T Consensus       127 ADIVIsAvG~~  137 (197)
T cd01079         127 SDVVITGVPSP  137 (197)
T ss_pred             CCEEEEccCCC
Confidence            99999999877

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK08223 hypothetical protein; Validated

Probab=95.49  E-value=0.057  Score=50.61  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +..||.|+|+ |-+|+.++..|+..|+ .+|.|+|-+.
T Consensus        26 ~~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            4569999998 9999999999999886 6899999874

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.49  E-value=0.035  Score=52.85  Aligned_cols=68  Identities=19%  Similarity=0.315  Sum_probs=45.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh-CCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~-~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      .+++|+|+ |..+..-+..+.. .+ +.+|.++|.+.  .+..+.++.+ . ...+...   +|.++++++||+|+.+
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~ta  199 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTA  199 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE-
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEc
Confidence            48999998 9888766655544 45 78999999986  4556667777 2 3455543   5678999999999875

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.48  E-value=0.066  Score=53.15  Aligned_cols=70  Identities=24%  Similarity=0.328  Sum_probs=44.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhc-CCCCceEEEEe-cCCccccc-cCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYM-GNDQLGQA-LEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~-~~~~~~v~~~~-~~~d~~~a-l~~aDiVi~~a  104 (340)
                      |||.|+|+ |.+|.+++..|...+.  +++++|.++...  ..+.+ ... .-+.+.. ....++++ ++++|.||++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~~-~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLDV-RTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcCE-EEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            68999998 9999999999988887  899999875221  12221 111 0111110 11223344 78999999975

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.35  Score=44.52  Aligned_cols=35  Identities=29%  Similarity=0.315  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++.+.|+||+|.+|++++..|+..|.  +|++.+.+.
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~   44 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRV   44 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999998887  888888754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.47  E-value=0.064  Score=50.39  Aligned_cols=95  Identities=18%  Similarity=0.222  Sum_probs=59.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ..+|+|+|+ |.+|..++..|...+.  +|.++|.+....  ........ ..+.    ..++.+.++++|+||.+...+
T Consensus       151 gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g~-~~~~----~~~l~~~l~~aDiVint~P~~  220 (287)
T TIGR02853       151 GSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMGL-IPFP----LNKLEEKVAEIDIVINTIPAL  220 (287)
T ss_pred             CCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCCC-eeec----HHHHHHHhccCCEEEECCChH
Confidence            469999998 9999999999988775  899999875211  11111111 1111    134567789999999985211


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCc
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~  150 (340)
                               ++  +    .   +.+....|++++|.+ ++|-.+
T Consensus       221 ---------ii--~----~---~~l~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       221 ---------VL--T----A---DVLSKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             ---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCC
Confidence                     11  1    1   123334567888765 778664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.46  E-value=0.1  Score=52.66  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC----CCCceEEEEecCCccccccC---CCCE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTRSEVAGYMGNDQLGQALE---DSDV   99 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~---~aDi   99 (340)
                      .+++|++||- |.+|++++..|+..|+  +|..+|+...+.  .++.+.    .. ..+...   .+++++.+   .+|+
T Consensus         5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k~--~~l~~~~~~~Ga-~~~~~a---~s~~e~v~~l~~~dv   75 (493)
T PLN02350          5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKKEGN-LPLYGF---KDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHhhhhcCC-cccccC---CCHHHHHhcCCCCCE
Confidence            3569999998 9999999999999998  999999865222  222221    11 112221   23444444   5999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~  148 (340)
                      ||+...               +-+.++++...+-.. .|..++|..||-.
T Consensus        76 Ii~~v~---------------~~~aV~~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         76 VIILVK---------------AGAPVDQTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             EEEECC---------------CcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence            999742               112233332333333 4667777776653

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=95.45  E-value=0.09  Score=50.07  Aligned_cols=65  Identities=15%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+||+|||+ |++|.+++..|...++  ++++.+....... ..+....    +..    .+..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~----~s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV----GTVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE----CCHHHHHhcCCEEEEeC
Confidence            469999998 9999999999998886  6666554331111 1111111    122    12457789999999985

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.44  E-value=0.1  Score=52.80  Aligned_cols=106  Identities=19%  Similarity=0.245  Sum_probs=63.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEe-----------cCCcc--
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-----------GNDQL--   90 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-----------~~~d~--   90 (340)
                      ..++.||+|+|+ |.+|...+..+...|.  +|+.+|.++ ...++..+.-..  ..+....           .+.++  
T Consensus       162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~--v~i~~~e~~~~~~gya~~~s~~~~~  236 (509)
T PRK09424        162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEF--LELDFEEEGGSGDGYAKVMSEEFIK  236 (509)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeE--EEeccccccccccchhhhcchhHHH
Confidence            345679999998 9999998888887775  799999986 334444432110  0010000           00111  


Q ss_pred             ------ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           91 ------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        91 ------~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                            .+.++++|+||.++|.|.++..         .-+.++..+.+   .|.+.++.++-+
T Consensus       237 ~~~~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~~v~~m---kpGgvIVdvg~~  287 (509)
T PRK09424        237 AEMALFAEQAKEVDIIITTALIPGKPAP---------KLITAEMVASM---KPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHhccCCCCEEEECCCCCcccCc---------chHHHHHHHhc---CCCCEEEEEccC
Confidence                  1224689999999998732111         01124444443   488888888765

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.43  E-value=0.049  Score=52.04  Aligned_cols=71  Identities=14%  Similarity=0.268  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+|+|+|+ |..|...+..+.....+.+|.++|.+.  ....+.++.+.. ..++..+   .|+++++++||+|+++-
T Consensus       128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT  200 (325)
T PRK08618        128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVT  200 (325)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEcc
Confidence            58999998 999887766555444468999999886  233344443221 2233333   46678899999999864

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=95.41  E-value=0.19  Score=45.10  Aligned_cols=114  Identities=17%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC-CCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~-~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (340)
                      .+.+.|+||+|.+|..++..|+..+.  ++++... +..  .....++.....  ++.... +-+|.   .++       
T Consensus         3 ~k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~   78 (246)
T PRK12938          3 QRIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALGF--DFIASEGNVGDWDSTKAAFDKVKAE   78 (246)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999998886  6777543 221  122223322221  222111 11221   122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tN  146 (340)
                      +...|+||+++|.....   ..+   -...+..|..-..    .+.+.+.+. +.+.++++|.
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS  140 (246)
T PRK12938         79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISS  140 (246)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEEec
Confidence            24689999999875321   112   2334556665544    444444332 3345666654

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.41  E-value=0.094  Score=46.65  Aligned_cols=73  Identities=12%  Similarity=0.154  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      +..||.|||| |.||...+..|...+.  +|++++.+.... ..++.+..   .+.......+ +..+.++|+||.+-+.
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~d   80 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATND   80 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCCC
Confidence            4579999998 9999999998888875  899997543222 22333321   2222211111 3568999998887543


Q ss_pred             C
Q 019519          107 P  107 (340)
Q Consensus       107 ~  107 (340)
                      +
T Consensus        81 ~   81 (202)
T PRK06718         81 P   81 (202)
T ss_pred             H
Confidence            3

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.41  E-value=0.11  Score=45.92  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..||+|+|+ |.+|+.++..|+..|+ .++.|+|-+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            469999998 8899999999999886 6899999763

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.40  E-value=0.11  Score=51.92  Aligned_cols=129  Identities=19%  Similarity=0.309  Sum_probs=76.0

Q ss_pred             eEEEEcCCCChHHH-HHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           30 KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        30 KI~IiGaaG~VG~~-~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      +|-++|. |..|.+ +|..|...|+  ++...|..... ...+|+...    +..+.+ .+ .+.++++|+||...|+|.
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~g----i~~~~g-~~-~~~~~~~d~vV~spgi~~   70 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEALG----IPIYIG-HS-AENLDDADVVVVSAAIKD   70 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHCc----CEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence            5789998 888887 8889998888  89999976532 223344322    222222 22 355788999999999875


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCCCceE
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLF  171 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg~~~~~kvi  171 (340)
                      ..-+ .......+++++.+.-- +.+...+..+|-+|=..+  +.|.+++.+++.+| +++.-++
T Consensus        71 ~~p~-~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~~~~~  132 (448)
T TIGR01082        71 DNPE-IVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDPTVVV  132 (448)
T ss_pred             CCHH-HHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCCeEEE
Confidence            3221 11222345555544322 222222223555655544  67777777788777 5443333

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.39  E-value=0.2  Score=49.77  Aligned_cols=117  Identities=20%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccc-------cCCCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQA-------LEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~a-------l~~aDi   99 (340)
                      ..++.|+||+|.+|..++..|+..+.  +++++|.........++........+.... ...+.++.       +...|+
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            46899999999999999999998887  899998754221122222111001111111 00111111       235899


Q ss_pred             EEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519          100 VIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus       100 Vi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      ||+.+|.....   .++   ....+..|+.-...+.+.+...   .+.+.++++|.
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            99999865321   122   2234566777777777766542   24567777764

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.36  E-value=0.035  Score=53.26  Aligned_cols=71  Identities=23%  Similarity=0.346  Sum_probs=45.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ++||+|+||+|.+|..++..|...++ ..||..+-.++..+...++..    ..+... . .+ ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~-d-~~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVE-D-LT-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEe-e-CC-HHHHcCCCEEEECCC
Confidence            47999999999999999988887653 347777755432233222221    123321 1 11 245689999999864

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.36  E-value=0.055  Score=51.18  Aligned_cols=70  Identities=16%  Similarity=0.131  Sum_probs=49.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ..++|+|+ |..|.+-+..+..-..+.+|.++|.+.  +...+.++.+.. ..++...   .+.++++++||+|+.+
T Consensus       118 ~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~ta  189 (301)
T PRK06407        118 ENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSI  189 (301)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEe
Confidence            49999997 988887666665545578999999886  344455555422 2245543   4568999999999975

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.31  E-value=0.035  Score=53.51  Aligned_cols=72  Identities=18%  Similarity=0.314  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .++||+|+||+|.+|..+...|...++ ..++.++...+..+...+...    ..+...  ..+ .++++++|+||++.+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~p   78 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSAG   78 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECCC
Confidence            457999999999999999988877543 457777755432222222211    122221  122 256789999999865

>PRK06123 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.29  Score=43.94  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------C
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E   95 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~   95 (340)
                      .+.|+||+|.+|++++..|+..+.  .+++.+.+..   .....++.....  ++.... +-+|   +.+++       .
T Consensus         4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQGG--EALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCCC--cEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            689999999999999999998886  7777775431   222222332211  111111 1112   22222       2


Q ss_pred             CCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHH----HHHHHhC--CCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLC----SAIAKYC--PNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i~~~i~----~~i~~~~--p~a~viv~tNP~  148 (340)
                      ..|+||+++|.....    ..+.   ...+..|+.....+.    +.+.+..  .++.++++|...
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~  145 (248)
T PRK06123         80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMA  145 (248)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchh
Confidence            679999999864321    1222   234556666544443    3333221  245666666543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.28  E-value=0.15  Score=46.66  Aligned_cols=37  Identities=24%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+..||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus        30 L~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         30 LKAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             hcCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            34569999998 9999999999998885 6999999874

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.27  E-value=0.082  Score=53.93  Aligned_cols=66  Identities=26%  Similarity=0.387  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|+|. |.+|+.+|..+..-+.  +|..||.......+.++.       +...   .++++.+++||+|++..
T Consensus       136 l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~~~---~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       136 LYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------VELV---DDLDELLARADFITVHT  201 (525)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CEEc---CCHHHHHhhCCEEEEcc
Confidence            34579999998 9999999999886666  899999753222222211       1211   35678899999999975

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN02494 adenosylhomocysteinase

Probab=95.25  E-value=0.095  Score=52.36  Aligned_cols=90  Identities=24%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .+|+|+|. |.+|..++..+...|.  +|+.+|+++.+ ..+.+..   +  .+      .+++++++++|+||.+.|..
T Consensus       255 KtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~~G---~--~v------v~leEal~~ADVVI~tTGt~  320 (477)
T PLN02494        255 KVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALMEG---Y--QV------LTLEDVVSEADIFVTTTGNK  320 (477)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHhcC---C--ee------ccHHHHHhhCCEEEECCCCc
Confidence            59999998 9999999999887776  89999987632 2222111   1  11      12457789999999976532


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                                     .++.  .+.+....+.+++++++-+.+
T Consensus       321 ---------------~vI~--~e~L~~MK~GAiLiNvGr~~~  345 (477)
T PLN02494        321 ---------------DIIM--VDHMRKMKNNAIVCNIGHFDN  345 (477)
T ss_pred             ---------------cchH--HHHHhcCCCCCEEEEcCCCCC
Confidence                           1110  233444457899999988644

>PRK06484 short chain dehydrogenase; Validated

Probab=95.25  E-value=0.16  Score=51.27  Aligned_cols=156  Identities=19%  Similarity=0.231  Sum_probs=83.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcccccc-------CCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLGQAL-------EDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~~al-------~~a   97 (340)
                      .+++.|+||+|.+|..++..|+..+.  +|++.|.++.  +....++....  ..+.... ...+..+.+       ...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999887  8999998752  22222221110  0111110 111122222       357


Q ss_pred             CEEEEcCCCCC--CC--CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 019519           98 DVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (340)
Q Consensus        98 DiVi~~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~k  169 (340)
                      |++|+.||...  .+  ..+   ....+..|+.-...+.+.+..+ ...+.||++|......           + .+..-
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~-~~~~~  412 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL-----------A-LPPRN  412 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC-----------C-CCCCc
Confidence            99999998742  11  222   2334555666555555554433 2346777777644221           1 33333


Q ss_pred             eEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          170 LFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       170 viG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .++.+.-....+-+.+++.++  +..|++..+
T Consensus       413 ~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  442 (520)
T PRK06484        413 AYCASKAAVTMLSRSLACEWA--PAGIRVNTV  442 (520)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            444432222345556666653  344544433

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=95.24  E-value=0.029  Score=51.24  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.+.+.|+||+|.+|..++..|+..+.  ++++.|.++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            346899999999999999999998887  899999865

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.22  E-value=0.54  Score=41.86  Aligned_cols=107  Identities=19%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc----cccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ----LGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d----~~~al~~aDiVi~~  103 (340)
                      +++.|+||+|.+|++++..|++.+.  ++++.|.+....    ..     .++.... +-+|    ..+.+...|+||+.
T Consensus         6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~~   74 (235)
T PRK06550          6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILCNT   74 (235)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence            5899999999999999999998887  899998764211    00     1122111 0011    11234578999999


Q ss_pred             CCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 019519          104 AGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (340)
Q Consensus       104 ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  146 (340)
                      +|....  +  ..+.   ...+..|......+.+.+...   .+.+.+++++.
T Consensus        75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  127 (235)
T PRK06550         75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS  127 (235)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            986421  1  1222   234556665544444444322   23456665553

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.21  E-value=0.036  Score=53.30  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +|+||+|+||+|.+|.-+.-.|...+ ...+|.++-..+..|..+.+..  .  .+....  .+. .+++++|+|+++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~--~--~l~~~~--~~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG--K--NLRVRE--VDS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC--c--ceEEee--CCh-HHhcCCCEEEEcCC
Confidence            35799999999999999998888644 2457777755442232222222  1  222211  121 34689999999753

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.21  E-value=0.19  Score=45.73  Aligned_cols=37  Identities=19%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCC--CChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaa--G~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++.+.+.|+||+  +.+|..++..|+..|.  .|++.+.++
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            344689999996  5899999999999887  899988764

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.20  E-value=0.062  Score=50.91  Aligned_cols=69  Identities=12%  Similarity=0.080  Sum_probs=48.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+|+|+|+ |..|...+..+.....+.++.++|.+.  ++..+.++....  ..+. .   .+.++++.+||+||.+-
T Consensus       126 ~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~--~~~~-~---~~~~~av~~aDiVitaT  196 (304)
T PRK07340        126 GDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG--PTAE-P---LDGEAIPEAVDLVVTAT  196 (304)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC--CeeE-E---CCHHHHhhcCCEEEEcc
Confidence            59999998 999998888776533346999999986  344444454321  1232 1   45678899999999864

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.18  E-value=0.22  Score=51.92  Aligned_cols=137  Identities=14%  Similarity=0.194  Sum_probs=82.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcc----ccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVi~~a  104 (340)
                      .+|.|+|. |.+|+.++..|...+.  +++++|.|+..  +..+.+... .-+.+.  .+|.    +..+++||.||++-
T Consensus       401 ~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~-~v~~GD--at~~~~L~~agi~~A~~vvv~~  472 (621)
T PRK03562        401 PRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFGM-KVFYGD--ATRMDLLESAGAAKAEVLINAI  472 (621)
T ss_pred             CcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcCC-eEEEEe--CCCHHHHHhcCCCcCCEEEEEe
Confidence            69999998 9999999999988887  89999988632  222332221 123222  2232    13457999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHHHHH
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF  184 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~~  184 (340)
                      ..+           +.|.    .++..+++..|+..++.-++...-..     .++..|   .+.++--+...+.++.+.
T Consensus       473 ~d~-----------~~n~----~i~~~ar~~~p~~~iiaRa~d~~~~~-----~L~~~G---ad~v~~e~~e~sl~l~~~  529 (621)
T PRK03562        473 DDP-----------QTSL----QLVELVKEHFPHLQIIARARDVDHYI-----RLRQAG---VEKPERETFEGALKSGRL  529 (621)
T ss_pred             CCH-----------HHHH----HHHHHHHHhCCCCeEEEEECCHHHHH-----HHHHCC---CCEEehhhHhHHHHHHHH
Confidence            322           3443    45556666789877665444332221     134455   234543344445566666


Q ss_pred             HHHHcCCCCCCC
Q 019519          185 YAGKANVNVAEV  196 (340)
Q Consensus       185 la~~l~v~~~~v  196 (340)
                      +-+.+|++++++
T Consensus       530 ~L~~lg~~~~~~  541 (621)
T PRK03562        530 VLESLGLGPYEA  541 (621)
T ss_pred             HHHHcCCCHHHH
Confidence            667888776554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.13  E-value=0.1  Score=49.45  Aligned_cols=95  Identities=19%  Similarity=0.326  Sum_probs=59.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .....+|+|+|- |.+|+.++..+..-|.  +|..+|.....        ...  . ...   .++++.+++||+|++..
T Consensus       119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~~--~-~~~---~~l~ell~~aDiv~~~l  181 (303)
T PRK06436        119 LLYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DGI--S-SIY---MEPEDIMKKSDFVLISL  181 (303)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cCc--c-ccc---CCHHHHHhhCCEEEECC
Confidence            345679999998 9999999987765566  99999965311        010  0 001   34678899999999975


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NP~d  149 (340)
                      -..  +         .+-.++-  .+.+....|.+++|+++  .++|
T Consensus       182 p~t--~---------~T~~li~--~~~l~~mk~ga~lIN~sRG~~vd  215 (303)
T PRK06436        182 PLT--D---------ETRGMIN--SKMLSLFRKGLAIINVARADVVD  215 (303)
T ss_pred             CCC--c---------hhhcCcC--HHHHhcCCCCeEEEECCCccccC
Confidence            221  1         1111111  23344445789999884  3444

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=95.13  E-value=0.15  Score=48.44  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             CeEEEEcCCCCh--------------------HHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe
Q 019519           29 RKVAVLGAAGGI--------------------GQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM   85 (340)
Q Consensus        29 ~KI~IiGaaG~V--------------------G~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~   85 (340)
                      |||+|-|| |+-                    |+.+|..|+..|+  +|+++|.+..   ......+.+...    ... 
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~A-   72 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KVV-   72 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----eec-
Confidence            68888887 742                    5778888888888  9999998752   122233443331    111 


Q ss_pred             cCCccccccCCCCEEEEcC
Q 019519           86 GNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        86 ~~~d~~~al~~aDiVi~~a  104 (340)
                        ++..++.++||+||++-
T Consensus        73 --aS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        73 --SDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             --CCHHHHHhCCCEEEEec
Confidence              34568899999999984

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK05599 hypothetical protein; Provisional

Probab=95.11  E-value=1.9  Score=38.96  Aligned_cols=116  Identities=13%  Similarity=0.198  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------ccccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (340)
                      |.+.|+||++.+|..++..|.+ +.  .|++.+.++  .+..+.++..... ..+.... +-+|.          .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-GE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-CC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            3588999989999999998884 54  899998765  3333444543221 1122111 11121          12234


Q ss_pred             CCCEEEEcCCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g---~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .-|++|+.+|......   .+.   .+....|    ..+.+.+.+.+.+...++.|+++|.-.
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~  139 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA  139 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            6899999988642211   111   1222223    233445556665544457777777544

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.2  Score=52.11  Aligned_cols=115  Identities=15%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++++.++  ......++....  .++.... +-+|   .++++      
T Consensus       370 ~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  445 (657)
T PRK07201        370 VGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAE  445 (657)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999998887  899999875  222233333221  1222221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC----C----CHHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKPG----M----TRDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~g----~----~r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tN  146 (340)
                       ...|++|+.+|......    .    +-...+..|.....    .+.+.+++. ..+.+|++|.
T Consensus       446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  509 (657)
T PRK07201        446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS  509 (657)
T ss_pred             cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence             26899999998642211    1    12233455655444    444444433 3456666654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.10  E-value=0.045  Score=52.83  Aligned_cols=73  Identities=26%  Similarity=0.312  Sum_probs=42.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEE-EEeCCCcHHHHHH--HhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAAD--VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~-L~D~~~~~~~~~d--l~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +||+|+||+|.+|..++..|...+.+ +++ +++.++..+....  ..+......+...  ..|.++.++++|+|+++.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~DvVf~al   76 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNLE--PIDEEEIAEDADVVFLAL   76 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCceee--cCCHHHhhcCCCEEEECC
Confidence            58999999999999999888866533 666 7676542222111  1111110011111  123334446899999975

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.08  E-value=0.088  Score=50.07  Aligned_cols=71  Identities=15%  Similarity=0.254  Sum_probs=47.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ..+|+|||+ |.+|...+..+.....+.+|.++|...  ....+.++.+..  ..+...   .+.++++++||+|+.+-
T Consensus       125 ~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g--~~~~~~---~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        125 ASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG--FDAEVV---TDLEAAVRQADIISCAT  197 (314)
T ss_pred             CceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEe---CCHHHHHhcCCEEEEee
Confidence            359999997 999998876555422356999999875  334444444321  124432   45678899999996653

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.01  E-value=0.082  Score=50.57  Aligned_cols=71  Identities=14%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+++|+|+ |..|...+..+.....+.+|.+++.+.  ++..+.++.+.. ..++...   .++++++++||+|+.+-
T Consensus       130 ~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~~---~~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       130 SVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTAA---TDPRAAMSGADIIVTTT  202 (326)
T ss_pred             cEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEEe---CCHHHHhccCCEEEEec
Confidence            48999998 999988877776433467999999876  334444443221 1233332   46778899999999864

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.98  E-value=0.097  Score=51.82  Aligned_cols=102  Identities=19%  Similarity=0.305  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ..+|+|+|+ |.+|..++..|...|. .+|+++|.+..+  ..+.++..     ....   ..++.+++.++|+||.+.+
T Consensus       180 ~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~-----~~i~---~~~l~~~l~~aDvVi~aT~  249 (417)
T TIGR01035       180 GKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG-----EAVK---FEDLEEYLAEADIVISSTG  249 (417)
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC-----eEee---HHHHHHHHhhCCEEEECCC
Confidence            469999998 9999999998887662 489999987522  22222221     1111   1356688899999999866


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccH
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTV  152 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t  152 (340)
                      .|..- .+            .+..+...... ...+++-+++|-|+=.
T Consensus       250 s~~~i-i~------------~e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       250 APHPI-VS------------KEDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             CCCce-Ec------------HHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            54211 11            11111111111 2458888999987654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.96  E-value=0.038  Score=53.20  Aligned_cols=71  Identities=23%  Similarity=0.376  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-C-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-L-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .+||+|+||+|.+|..+...|...+ + +.+|.++...+..|....+...    .+....  .| .+.++++|+|+++++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~-~~~~~~~Divf~a~~   77 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AK-INSFEGVDIAFFSAG   77 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CC-HHHhcCCCEEEECCC
Confidence            4799999999999999999888544 3 4568888765433333222211    222221  23 245789999999764

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.94  E-value=0.11  Score=52.91  Aligned_cols=65  Identities=23%  Similarity=0.356  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|+|. |.+|+.++..+..-+.  +|+.||.........++   .    +...    ++++.+++||+|++..
T Consensus       138 l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~~----~l~ell~~aDiV~l~l  202 (526)
T PRK13581        138 LYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL---G----VELV----SLDELLARADFITLHT  202 (526)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEEE----cHHHHHhhCCEEEEcc
Confidence            35679999998 9999999999987666  99999975422222111   1    2221    3578899999999975

>PRK07589 ornithine cyclodeaminase; Validated

Probab=94.92  E-value=0.086  Score=50.87  Aligned_cols=70  Identities=23%  Similarity=0.358  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+++|||+ |..+..-+..+..-..+.+|.++|.+.  ....+.++.+..  .++...   ++.++++++||+|+.+-
T Consensus       130 ~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~--~~v~~~---~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        130 RTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG--LRIVAC---RSVAEAVEGADIITTVT  201 (346)
T ss_pred             cEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC--CcEEEe---CCHHHHHhcCCEEEEec
Confidence            58999997 988876665454433568999999886  344555555421  234432   46789999999999854

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.89  E-value=0.062  Score=52.56  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .++||+|+||+|.+|..+...|...+. .||.++..++..+....-.+... ...+.... ..+ .+.++++|+|+++.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            457999999999999999998887753 48888876432222111111100 00111010 112 13378999999975

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.88  E-value=0.13  Score=45.55  Aligned_cols=39  Identities=31%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        23 ~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.+++.++|+|+|. |.+|++++..|...|.  +|+.+|.++
T Consensus        23 ~~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~--~Vvv~D~~~   61 (200)
T cd01075          23 TDSLEGKTVAVQGL-GKVGYKLAEHLLEEGA--KLIVADINE   61 (200)
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            34445679999998 9999999999998887  999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.88  E-value=0.1  Score=44.75  Aligned_cols=56  Identities=25%  Similarity=0.468  Sum_probs=40.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      +.+||+|+|.++.||..++..|...+.  .+.+++..                       +.|+++.++.||+||.++|.
T Consensus        35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~   89 (160)
T PF02882_consen   35 EGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGK   89 (160)
T ss_dssp             TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSS
T ss_pred             CCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeecc
Confidence            446999999977999999999998875  66666532                       13456778999999999987


Q ss_pred             C
Q 019519          107 P  107 (340)
Q Consensus       107 ~  107 (340)
                      |
T Consensus        90 ~   90 (160)
T PF02882_consen   90 P   90 (160)
T ss_dssp             T
T ss_pred             c
Confidence            6

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=94.88  E-value=0.75  Score=41.04  Aligned_cols=114  Identities=13%  Similarity=0.143  Sum_probs=63.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------cCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LED   96 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~~   96 (340)
                      |.|+||+|.+|..++..|+..+.  ++++++...   ......++.+..  .++..+. +-+|.   .++       +..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999998887  788887543   122233343322  1232221 11121   111       234


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 019519           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~  148 (340)
                      .|.+|..+|.....   ..+   ....+..|......+.+.+    .+..+.+.++++|...
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            68999988864322   122   2334566666555554432    2223456677676544

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.87  E-value=0.23  Score=42.32  Aligned_cols=68  Identities=10%  Similarity=0.104  Sum_probs=44.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+..||.|+|| |.||...+..|...+.  +|++++.+.... ..++.      .+......-+ ++.++++|+||.+-
T Consensus        11 l~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~-l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         11 LHNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKE-MKELP------YITWKQKTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHH-HHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence            34579999998 9999999999998887  899997432222 12221      1111111111 35689999999874

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.86  E-value=0.65  Score=46.98  Aligned_cols=130  Identities=18%  Similarity=0.169  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ..||.|+|. |..|.+++..|...|.  ++...|.+.......+|.....  .+....+..+ .+.+.++|+||...|+|
T Consensus         7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~   80 (498)
T PRK02006          7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLS   80 (498)
T ss_pred             CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence            458999998 9999998888888887  8999997652211123443321  1222222122 35678999999998887


Q ss_pred             CCCCC--CHHHH-HHHHHHHHHH---HHHHHHHhC-C--CcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          108 RKPGM--TRDDL-FNINAGIVKD---LCSAIAKYC-P--NAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       108 ~~~g~--~r~~~-~~~N~~i~~~---i~~~i~~~~-p--~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      ...-.  .-... -..|++++.+   +++.++..+ +  ...+|-+|=..+  +.|.+++.+++..|
T Consensus        81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            54211  11111 1234444322   122222211 1  113555655554  67777777787776

>PRK08017 oxidoreductase; Provisional

Probab=94.86  E-value=0.19  Score=45.45  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+|.|+||+|.+|++++..|+..+.  ++++++.+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999998887  888888764

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.85  E-value=0.074  Score=50.14  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ...+|+|||.+|.||..++..|...+.  ++.+++...                       .++.+..++||+||.+.|.
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence            457999999966999999999998887  888886431                       1356778999999999876


Q ss_pred             C
Q 019519          107 P  107 (340)
Q Consensus       107 ~  107 (340)
                      |
T Consensus       213 ~  213 (301)
T PRK14194        213 P  213 (301)
T ss_pred             h
Confidence            6

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.85  E-value=0.25  Score=43.70  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +..||+|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus        20 ~~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            3469999998 8899999999999885 6899999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.84  E-value=0.17  Score=49.87  Aligned_cols=89  Identities=21%  Similarity=0.286  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ..+|+|+|+ |.+|..++..+...|.  +++.+|+++. ...+..+.   +  ...      +.+++++++|+||.+.|.
T Consensus       202 GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~G---~--~~~------~~~e~v~~aDVVI~atG~  267 (413)
T cd00401         202 GKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAMEG---Y--EVM------TMEEAVKEGDIFVTTTGN  267 (413)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhcC---C--EEc------cHHHHHcCCCEEEECCCC
Confidence            469999998 9999999998888776  7888998863 22222211   1  111      234678999999998653


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +               .++..  ..++...+.+++++++.+
T Consensus       268 ~---------------~~i~~--~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         268 K---------------DIITG--EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             H---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence            2               12221  123334578899999876

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=94.82  E-value=0.066  Score=48.86  Aligned_cols=112  Identities=18%  Similarity=0.155  Sum_probs=58.1

Q ss_pred             EEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHH----hcCC--------CCceEEEEecC----------Cc
Q 019519           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADV----GHIN--------TRSEVAGYMGN----------DQ   89 (340)
Q Consensus        33 IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl----~~~~--------~~~~v~~~~~~----------~d   89 (340)
                      |+||+||+|+++...|+..+...+|+++-..... .-...+    .+..        ...+++...+.          .+
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            6899999999999988877642288888665411 111112    1111        13456655421          11


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +.+-.+++|+||++|+.-. ...+..++...|+...+++.+...+.... .++.+|.
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iST  135 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIST  135 (249)
T ss_dssp             HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEE
T ss_pred             hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEecc
Confidence            2222378999999986421 12233345678999999999998854434 4554543

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=94.81  E-value=0.11  Score=49.38  Aligned_cols=70  Identities=7%  Similarity=0.092  Sum_probs=48.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ..++|+|+ |..+..-+..+.....+.+|.++|.+.  +...+..+.+..  ..+...   ++.++++++||+|+.+-
T Consensus       129 ~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~--~~v~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        129 SAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG--FAVNTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC--CcEEEE---CCHHHHhcCCCEEEEec
Confidence            59999997 988877766666555578999999986  233333344322  244433   45689999999999853

>PRK07578 short chain dehydrogenase; Provisional

Probab=94.81  E-value=0.26  Score=42.91  Aligned_cols=104  Identities=20%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |++.|+||+|.+|..++..|... .  +|++.+.+.. ....|+.+..   .+.      ...+.+...|++|..+|...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~---~~~------~~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPA---SIR------ALFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChH---HHH------HHHHhcCCCCEEEECCCCCC
Confidence            48999999999999999999877 3  8888886531 1111222111   000      00111346899999998642


Q ss_pred             C-C--CCCHHH---HHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 019519          109 K-P--GMTRDD---LFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (340)
Q Consensus       109 ~-~--g~~r~~---~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (340)
                      . +  +.+..+   .+..|+.....+.+....+- +.+.++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            1 1  223222   23445554444554444331 345566555

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.81  E-value=0.23  Score=49.94  Aligned_cols=126  Identities=16%  Similarity=0.128  Sum_probs=76.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ..||+|+|. |.-|.+.+..|...+.  ++.+.|.++.  .....+|.. .  .... . +..+ .+.+.++|+||..-|
T Consensus         8 ~~~v~v~G~-G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~-~--~~~~-~-~~~~-~~~~~~~d~vV~Spg   78 (468)
T PRK04690          8 GRRVALWGW-GREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALAD-A--ALLV-E-TEAS-AQRLAAFDVVVKSPG   78 (468)
T ss_pred             CCEEEEEcc-chhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhh-c--CEEE-e-CCCC-hHHccCCCEEEECCC
Confidence            358999998 9999999999998887  8999997652  111223433 1  1111 1 1122 355789999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      +|...-. .......+++++.++--......    ....+|-+|=..+  +.|.+++++++..|
T Consensus        79 I~~~~p~-~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         79 ISPYRPE-ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             CCCCCHH-HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence            8853222 22223456777755443232221    1123555665554  67777777777766

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.80  E-value=0.29  Score=49.26  Aligned_cols=125  Identities=16%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHH-hcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl-~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      +.||.|+|+ |..|.+++..|...|.  ++..+|.+....  .++ ....    +..+.+..+ .+.+.++|+||...|+
T Consensus        15 ~~~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~--~~~l~~~g----i~~~~~~~~-~~~~~~~d~vV~Spgi   84 (473)
T PRK00141         15 SGRVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETAR--HKLIEVTG----VADISTAEA-SDQLDSFSLVVTSPGW   84 (473)
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHHH--HHHHHhcC----cEEEeCCCc-hhHhcCCCEEEeCCCC
Confidence            358999998 9999999999998887  899999654221  122 2211    222222112 3457899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHH-----hCCCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~-----~~p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      |...-. ....-..+++++.++.-....     +.....+|-+|=..+  +.+.+++.+++..|
T Consensus        85 ~~~~p~-~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         85 RPDSPL-LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             CCCCHH-HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            853322 222234566776666543321     221224566766665  67777777788776

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.79  E-value=0.69  Score=44.38  Aligned_cols=113  Identities=18%  Similarity=0.281  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCccccccCC-CCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~-aDiVi~~ag  105 (340)
                      -.+|+|+|+ |-+|...+..+...+.  +++.+|+++. ...+.+|.   ...-+.. . ..|.-+++++ +|+||.|++
T Consensus       167 G~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lG---Ad~~i~~-~-~~~~~~~~~~~~d~ii~tv~  238 (339)
T COG1064         167 GKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLG---ADHVINS-S-DSDALEAVKEIADAIIDTVG  238 (339)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhC---CcEEEEc-C-CchhhHHhHhhCcEEEECCC
Confidence            469999998 8777776666665664  9999999873 33444553   1111221 1 1222344433 999999985


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-CccH--HHHHHHHHHhCCCCCCceEec
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-NSTV--PIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d~~t--~~~~~~~~~sg~~~~~kviG~  173 (340)
                       +               .-+.   ..++-..+++.++.+.+|- ..+.  .+..    .-  +...+|.|.
T Consensus       239 -~---------------~~~~---~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~----li--~~~~~i~GS  284 (339)
T COG1064         239 -P---------------ATLE---PSLKALRRGGTLVLVGLPGGGPIPLLPAFL----LI--LKEISIVGS  284 (339)
T ss_pred             -h---------------hhHH---HHHHHHhcCCEEEEECCCCCcccCCCCHHH----hh--hcCeEEEEE
Confidence             3               1122   2333345789999999994 3322  1211    11  345688887

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=94.75  E-value=0.52  Score=41.98  Aligned_cols=113  Identities=19%  Similarity=0.201  Sum_probs=61.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC-Cc--HHHHHHHhcCCCCceEEEEe-cCCcc----------ccccC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NT--PGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~-~~--~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (340)
                      .+.|+||+|.+|+.++..|+..+.  ++++.... +.  .....++....  .++.... +-+|.          .+.+.
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCGPNEERAEAWLQEQGALG--FDFRVVEGDVSSFESCKAAVAKVEAELG   77 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhhC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999998887  78887762 21  11112222111  1222221 11221          11234


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|+||+.+|.....   ..+   ....+..|..-...    +.+.+++. +.+.+++++..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~  138 (242)
T TIGR01829        78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV  138 (242)
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence            689999999864321   112   23344556664444    44444433 34566666644

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06484 short chain dehydrogenase; Validated

Probab=94.75  E-value=0.23  Score=50.17  Aligned_cols=115  Identities=22%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcccc-------ccCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLGQ-------ALEDSD   98 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~~-------al~~aD   98 (340)
                      ..+.|+||++.+|..++..|+..+.  .|+++|.+..  .....++.....  .+.... ...++++       .+...|
T Consensus         6 k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~g~iD   81 (520)
T PRK06484          6 RVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPDHH--ALAMDVSDEAQIREGFEQLHREFGRID   81 (520)
T ss_pred             eEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCcee--EEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence            5788999999999999999999887  8999998652  222222221110  111110 0111111       234689


Q ss_pred             EEEEcCCCC--C-CC--CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           99 VVIIPAGVP--R-KP--GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        99 iVi~~ag~~--~-~~--g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ++|+.+|..  . .+  ..+   -...+..|+.    +.+.+.+.+.+....+.+++++.-
T Consensus        82 ~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~  142 (520)
T PRK06484         82 VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASG  142 (520)
T ss_pred             EEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCc
Confidence            999999862  1 11  222   2234455555    444455555443333366766643

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.74  E-value=0.095  Score=51.07  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEE-ecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ++.||+|+|+ |.+|...+..+...|.  +|..+|.+..+..  .+.... ...+... ....++.+.++++|+||.+.+
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~~  239 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAVL  239 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccCCEEEEccc
Confidence            4568999998 9999999999987776  7999998752211  121111 0112111 111345677899999999876


Q ss_pred             CC
Q 019519          106 VP  107 (340)
Q Consensus       106 ~~  107 (340)
                      .|
T Consensus       240 ~~  241 (370)
T TIGR00518       240 IP  241 (370)
T ss_pred             cC
Confidence            54

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.73  E-value=0.022  Score=54.03  Aligned_cols=70  Identities=14%  Similarity=0.197  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCC-CcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~-~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ..++|+| ||+|.||..+...|-++++ ++++.|++.. ...+....+.    ...+..-.  -+ ++++++.|++++ +
T Consensus         2 ~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~----g~~~~V~~--l~-~~~f~~vDia~f-a   72 (322)
T PRK06901          2 ATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFN----NKAVEQIA--PE-EVEWADFNYVFF-A   72 (322)
T ss_pred             CcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEEC----CEEEEEEE--CC-ccCcccCCEEEE-c
Confidence            4579999 9999999999998888874 7899999876 3333222111    11222221  11 356899999999 6


Q ss_pred             C
Q 019519          105 G  105 (340)
Q Consensus       105 g  105 (340)
                      |
T Consensus        73 g   73 (322)
T PRK06901         73 G   73 (322)
T ss_pred             C
Confidence            5

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.72  E-value=0.053  Score=52.08  Aligned_cols=72  Identities=21%  Similarity=0.279  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +.+||+|+||+|.+|..+...|.... ...||.++-.++..|....+..  .  .+....  .+ +.++.++|+|+++.+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~--~--~~~v~~--~~-~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGG--K--SVTVQD--AA-EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECC--c--ceEEEe--Cc-hhhccCCCEEEECCC
Confidence            34799999999999999999888753 3468888865442232222221  1  222211  12 234579999999764

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.67  E-value=0.16  Score=50.59  Aligned_cols=128  Identities=21%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ++||+|+|- |.-|.+++..|...+.  ++..+|.++......+..  .....+....+..+. +...++|+||..-|+|
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~--~~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~   80 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQP--LLLEGIEVELGSHDD-EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhh--hhccCceeecCccch-hccccCCEEEECCCCC
Confidence            679999998 9999999999998886  999999876221001111  001233333333333 6688999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHHHHHHHHhC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~t~~~~~~~~~sg  163 (340)
                      ..+-.- .......++++-++--..+.. +.+.+|-+  ||==.+.|.+++++++.+|
T Consensus        81 ~~~p~v-~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PTHPLV-EAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCCHHH-HHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence            533311 112245566666665555543 22224445  4444477777888888887

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.65  E-value=0.072  Score=51.33  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=26.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEe
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD   61 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D   61 (340)
                      |+||+|+||+|.+|..++..|...+.+.-+.+.|
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~   35 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS   35 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence            4799999999999999998888765433345566

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.65  E-value=0.29  Score=39.47  Aligned_cols=33  Identities=39%  Similarity=0.521  Sum_probs=24.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEE-EEeCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIA   63 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~-L~D~~   63 (340)
                      ||+|+|++|.+|..++..+...+.+ +++ +++.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~   34 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASA   34 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEech
Confidence            6899997799999998888875433 444 34654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=94.63  E-value=0.15  Score=50.51  Aligned_cols=103  Identities=23%  Similarity=0.398  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ..+|+|+|+ |.+|..++..|...+. .+|+++|.+...  ..+.++.     ..+...   .++.+++.++|+||.+.+
T Consensus       182 ~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g-----~~~~~~---~~~~~~l~~aDvVI~aT~  251 (423)
T PRK00045        182 GKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG-----GEAIPL---DELPEALAEADIVISSTG  251 (423)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC-----CcEeeH---HHHHHHhccCCEEEECCC
Confidence            469999998 9999999988876653 579999986522  2222221     112211   355677899999999876


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEecCCCCccH
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIA-KYCPNAIVNMISNPVNSTV  152 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~-~~~p~a~viv~tNP~d~~t  152 (340)
                      .|... ..        .+.++.   .+. +.....+++-+++|-|+=.
T Consensus       252 s~~~~-i~--------~~~l~~---~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        252 APHPI-IG--------KGMVER---ALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             CCCcE-Ec--------HHHHHH---HHhhccCCCeEEEEeCCCCCCcc
Confidence            54211 11        111111   111 1124578888999987643

>PRK07877 hypothetical protein; Provisional

Probab=94.63  E-value=0.14  Score=53.94  Aligned_cols=76  Identities=21%  Similarity=0.336  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-----cHHH---------------HHHHhcCCCCceEEEEec
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV---------------AADVGHINTRSEVAGYMG   86 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-----~~~~---------------~~dl~~~~~~~~v~~~~~   86 (340)
                      +..||+|+|+ | +|++++..|+..|++.+|.|+|-+.     ..-+               +..+.......+|+.+..
T Consensus       106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~  183 (722)
T PRK07877        106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD  183 (722)
T ss_pred             hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence            3569999998 9 9999999999998778999999874     1111               111222222334554431


Q ss_pred             ---CCccccccCCCCEEEEcC
Q 019519           87 ---NDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        87 ---~~d~~~al~~aDiVi~~a  104 (340)
                         ..+..+.++++|+||-+.
T Consensus       184 ~i~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        184 GLTEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             cCCHHHHHHHhcCCCEEEECC
Confidence               134555678999999875

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.59  E-value=0.21  Score=49.94  Aligned_cols=124  Identities=21%  Similarity=0.273  Sum_probs=77.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .||.|+|. |..|.+++..|...|.  ++...|.++.   .....+|....    +....+. +..+.+.++|+||.+.|
T Consensus        15 ~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~~~-~~~~~~~~~dlVV~Spg   86 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKELG----VKLVLGE-NYLDKLDGFDVIFKTPS   86 (458)
T ss_pred             CeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhCC----CEEEeCC-CChHHhccCCEEEECCC
Confidence            49999998 9999999999998887  8999997651   11122344322    2222222 22355789999999988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      ++...-+ .......+++++.++-. +.++. +..+|-+|=..+  +.+.+++.+++..|
T Consensus        87 i~~~~p~-~~~a~~~~i~i~s~~e~-~~~~~-~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         87 MRIDSPE-LVKAKEEGAYITSEMEE-FIKYC-PAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             CCCCchH-HHHHHHcCCcEEechHH-hhhhc-CCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            8753322 22223467777765532 22332 234566666655  66777777777666

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=94.57  E-value=0.12  Score=48.27  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=43.0

Q ss_pred             EEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        33 IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||. |.+|..++..|...++  +|.++|.++..  ..++....    ...   ..++.+++++||+||++.
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            5797 9999999999998887  89999987522  22233221    111   134567899999999985

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.56  E-value=0.2  Score=49.92  Aligned_cols=128  Identities=19%  Similarity=0.305  Sum_probs=75.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .++|.|+|+ |..|.+.+..|...|.  ++.+.|..........|.....  .+..+.+..+ ...+.++|+||...|+|
T Consensus         5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~~--gi~~~~g~~~-~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMFD--GLVFYTGRLK-DALDNGFDILALSPGIS   78 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhccC--CcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence            358999998 9999999988888887  8999997652211223433211  2333322212 23357899999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHHH--HHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          108 RKPGMTRDDLFNINAGIVKD--LCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~--i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      ...-. .......+++++.+  ++..+.+. .+..+|-+|=..+  +.|.+++++++.+|
T Consensus        79 ~~~p~-~~~a~~~~i~v~~~~~~~~~~~~~-~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         79 ERQPD-IEAFKQNGGRVLGDIELLADIVNR-RGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             CCCHH-HHHHHHcCCcEEEhHHHHHHhhhc-CCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            43221 11122355665533  32222211 1234555665555  67777877888777

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.53  E-value=0.17  Score=50.56  Aligned_cols=90  Identities=23%  Similarity=0.291  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH-HHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...+|+|+|. |.+|..++..+...+.  +|..+|.++... .+..  + .+  .+      .+++++++.||+||.+.|
T Consensus       253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G~--~~------~~leell~~ADIVI~atG  318 (476)
T PTZ00075        253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-GY--QV------VTLEDVVETADIFVTATG  318 (476)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-Cc--ee------ccHHHHHhcCCEEEECCC
Confidence            4469999998 9999999999987776  899998876322 1111  1 11  11      135678999999999864


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      .+               .++.  .+.++...|.+++++++-.
T Consensus       319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence            22               1111  1234445588999998766

>PRK06483 dihydromonapterin reductase; Provisional

Probab=94.53  E-value=0.42  Score=42.71  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +++.|+||+|.+|..++..|+..+.  +|++.|.++
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            4789999999999999999998887  899999875

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.52  E-value=0.07  Score=50.90  Aligned_cols=73  Identities=26%  Similarity=0.276  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC--CceEEEEecCCcccc-ccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQ-ALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~-al~~aDiVi~~  103 (340)
                      |+||+|+||+|..|..+.-.|...+.+ |+.++...+..+..+.-.|...  ...+....  .|.++ ..++||+||++
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~--~~~~~~~~~~~DvvFla   77 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQT--IDPEKIELDECDVVFLA   77 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCccccccccccccc--CChhhhhcccCCEEEEe
Confidence            679999999999999999988888754 6888876553333322222211  11122211  12222 24569999996

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.52  E-value=0.096  Score=45.23  Aligned_cols=55  Identities=27%  Similarity=0.522  Sum_probs=42.8

Q ss_pred             CCCeEEEEcCCCC-hHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~-VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...||.|+|+ |. +|..++..|...+.  ++.+++.+.                       .++.+.+++||+||.+.+
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~   96 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG   96 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence            3569999998 86 58889988888776  788887431                       245677899999999887


Q ss_pred             CC
Q 019519          106 VP  107 (340)
Q Consensus       106 ~~  107 (340)
                      .|
T Consensus        97 ~~   98 (168)
T cd01080          97 KP   98 (168)
T ss_pred             CC
Confidence            66

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08862 short chain dehydrogenase; Provisional

Probab=94.48  E-value=1.1  Score=40.20  Aligned_cols=115  Identities=10%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cc-------ccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~al   94 (340)
                      .+.+.|+||++.+|..++..|+..|.  +|++++.++  .+....++....  .++..+. +..|   .+       +.+
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF   80 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999988999999999999887  899998876  222222332211  1122111 1112   21       112


Q ss_pred             C-CCCEEEEcCCCCCCC----CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 019519           95 E-DSDVVIIPAGVPRKP----GMTRDD---LFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~-~aDiVi~~ag~~~~~----g~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      . .-|++|..+|....+    ..+..+   .+..|.    ...+...+.+.+....+.|+++|.
T Consensus        81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            3 689999998742211    122222   222232    344555666665444567777764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.46  E-value=0.3  Score=43.51  Aligned_cols=71  Identities=17%  Similarity=0.108  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ..||.|+|+ |.+|..-+..|+..+.  +|+++|.+... ...++....   ++.......+ ...+.++|+||.+-+.
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~d   79 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATDD   79 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence            469999998 9999999999988876  89999875432 222333222   3443322222 3568999999987543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.44  E-value=0.13  Score=49.21  Aligned_cols=71  Identities=23%  Similarity=0.398  Sum_probs=48.6

Q ss_pred             CCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        21 ~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +.+.....+.|+|||. |.+|+.++..+..-+.  +|..||....+....  .+     ....   ..++++-++.||||
T Consensus       135 ~~g~el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~~---~~~Ld~lL~~sDiv  201 (324)
T COG0111         135 FRGTELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVVG---VDSLDELLAEADIL  201 (324)
T ss_pred             cccccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----ccee---cccHHHHHhhCCEE
Confidence            4333334579999998 9999999999987777  999999843221111  00     1111   13567889999999


Q ss_pred             EEcC
Q 019519          101 IIPA  104 (340)
Q Consensus       101 i~~a  104 (340)
                      ++..
T Consensus       202 ~lh~  205 (324)
T COG0111         202 TLHL  205 (324)
T ss_pred             EEcC
Confidence            9963

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.41  E-value=0.21  Score=49.74  Aligned_cols=124  Identities=18%  Similarity=0.273  Sum_probs=75.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHH---HHHHhcCCCCceEEEEecCCccc-----cccCCCCEEE
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGNDQLG-----QALEDSDVVI  101 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~---~~dl~~~~~~~~v~~~~~~~d~~-----~al~~aDiVi  101 (340)
                      ||.|+|+ |..|.+.+..|...|+  ++.+.|.++....   ...|....    +..+.+. +..     ..+.+.|.||
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~-~~~~~~~~~~~~~~d~vv   73 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGK-PLELESFQPWLDQPDLVV   73 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECC-ccchhhhhHHhhcCCEEE
Confidence            7999998 9999999989998887  9999998762111   11244322    2222221 111     2477899999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      .+.|.|...-+ .......+++++.++....+... +..+|-+|=..+  +.|.+++.+++..|
T Consensus        74 ~s~gi~~~~~~-~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         74 VSPGIPWDHPT-LVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             ECCCCCCCCHH-HHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            99888743211 11222456677766654433322 333455554544  67777777787777

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.37  E-value=0.13  Score=50.21  Aligned_cols=35  Identities=31%  Similarity=0.606  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      +..||+|+|+ |-+|+.++..|+..|. .+|.|+|.+
T Consensus       134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            3469999998 9999999999998885 689999987

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.36  E-value=0.3  Score=48.42  Aligned_cols=93  Identities=18%  Similarity=0.218  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ...+|+|+|+ |.+|..++..+...+.  +|+++|+++.+..... .+ .+  .+      .+++++++++|+||.+.|.
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~-~~-G~--~v------~~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAA-MD-GF--RV------MTMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHH-hc-CC--Ee------cCHHHHHhCCCEEEECCCC
Confidence            3469999998 9999999999987776  8999998863221110 11 11  21      1346778999999987642


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      +               .++.  .+.+....+.+++++++-+.+
T Consensus       278 ~---------------~vI~--~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        278 K---------------DVIT--AEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             H---------------HHHH--HHHHhcCCCCCEEEEcCCCCC
Confidence            2               2222  122333446789998876643

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.35  E-value=0.45  Score=44.25  Aligned_cols=35  Identities=26%  Similarity=0.497  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..+|+|+|+ |.||+.++..|+..|+ .+|.|+|.+.
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD   64 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            469999998 9999999999999885 5899999874

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.35  E-value=0.25  Score=48.16  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+..||+|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus        39 l~~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600         39 LHNARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            44579999998 9999999999998875 6899999873

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.34  E-value=0.18  Score=49.89  Aligned_cols=123  Identities=17%  Similarity=0.240  Sum_probs=74.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHH-HH-HhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVA-AD-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~-~d-l~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ||.|+|. |..|.++|..|...|+  +|...|.... .... .. +....   .+..+.+ .+ .+.+.++|+||...|+
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~~---gi~~~~g-~~-~~~~~~~d~vv~sp~i   72 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLNE---GSVLHTG-LH-LEDLNNADLVVKSPGI   72 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhcc---CcEEEec-Cc-hHHhccCCEEEECCCC
Confidence            6889998 9999999999998888  9999998652 1111 11 22111   1222222 23 3567899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      |...-+ .......+++++.+. +.+.+.. +..+|-+|=..+  +.|.+++.+++..|
T Consensus        73 ~~~~p~-~~~a~~~~i~i~~~~-e~~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        73 PPDHPL-VQAAAKRGIPVVGDI-ELFLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCHH-HHHHHHCCCcEEEHH-HHHHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            753221 222234566665553 2233333 334555665554  67777777787776

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.30  E-value=2.2  Score=39.16  Aligned_cols=156  Identities=13%  Similarity=0.133  Sum_probs=78.2

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEE-ecCCc---cc-------cc
Q 019519           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGY-MGNDQ---LG-------QA   93 (340)
Q Consensus        28 ~~KI~IiGaaG--~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~-~~~~d---~~-------~a   93 (340)
                      .+.+.|+||++  -+|..++..|+..|.  .|++.|.+. ......++.....  ....+ .+-+|   .+       +.
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLG--SDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhccC--CceEeecCCCCHHHHHHHHHHHHhh
Confidence            35788999853  699999999999887  788988764 2223333432211  11111 11112   11       11


Q ss_pred             cCCCCEEEEcCCCCCCC--------CCCHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHH
Q 019519           94 LEDSDVVIIPAGVPRKP--------GMTRD---DLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKK  161 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~--------g~~r~---~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~  161 (340)
                      +-..|++|..+|.....        +.+..   ..+.-|......+.+.+... .+.+.|+++|.-....          
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~----------  151 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  151 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC----------
Confidence            23579999999864211        12222   22344554333333333221 2356777776432110          


Q ss_pred             hCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       162 sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                       + .|..-.++.+.-....+-+.++..++  +..|++..+
T Consensus       152 -~-~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~i  187 (262)
T PRK07984        152 -A-IPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  187 (262)
T ss_pred             -C-CCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEEeee
Confidence             1 22222344433223346666777663  455655444

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.28  E-value=0.23  Score=39.39  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcc----ccccCCCCEEEEcCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIPAGV  106 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVi~~ag~  106 (340)
                      |.|+|. |.+|..++..|...+.  +++++|.++..  ...+..... .-+.+.  .+|.    +..+++||.||++.+ 
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~--~~~~~~~~~-~~i~gd--~~~~~~l~~a~i~~a~~vv~~~~-   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPER--VEELREEGV-EVIYGD--ATDPEVLERAGIEKADAVVILTD-   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHH--HHHHHHTTS-EEEES---TTSHHHHHHTTGGCESEEEEESS-
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHH--HHHHHhccc-cccccc--chhhhHHhhcCccccCEEEEccC-
Confidence            679998 9999999999998664  89999988522  222232221 112211  1221    134689999998853 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                                    |-..-..++..+++..|+..++...+
T Consensus        72 --------------~d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   72 --------------DDEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             --------------SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             --------------CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence                          22333445566677788776665543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.28  E-value=0.33  Score=45.58  Aligned_cols=75  Identities=21%  Similarity=0.267  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-------------------H--HHHHHHhcCCCCceEEEEe
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-------------------P--GVAADVGHINTRSEVAGYM   85 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-------------------~--~~~~dl~~~~~~~~v~~~~   85 (340)
                      ...||.|+|+ |.+|+.++..|+..|+ .+|.|+|.+..                   +  ..+..|.......+++...
T Consensus        18 ~~s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~   95 (286)
T cd01491          18 QKSNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST   95 (286)
T ss_pred             hcCcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            3569999998 9999999999999886 68999997641                   0  0111222222234555554


Q ss_pred             cCCccccccCCCCEEEEcC
Q 019519           86 GNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        86 ~~~d~~~al~~aDiVi~~a  104 (340)
                      ...+ ++.+.+.|+||.+.
T Consensus        96 ~~~~-~~~l~~fdvVV~~~  113 (286)
T cd01491          96 GPLT-TDELLKFQVVVLTD  113 (286)
T ss_pred             ccCC-HHHHhcCCEEEEec
Confidence            3222 46789999998885

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=94.26  E-value=0.15  Score=49.75  Aligned_cols=71  Identities=18%  Similarity=0.275  Sum_probs=49.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh-CCCcceEEEEeCCC--cHHHHHHHhcCCCC-ceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~-~~~~~el~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ..++|+|+ |..+.+-+..++. .+.+.+|.++|.+.  +...+.++.+.... ..+...   .+.++++++||+|+.+
T Consensus       156 ~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~---~s~~eav~~ADIVvta  230 (379)
T PRK06199        156 KVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV---DSIEEVVRGSDIVTYC  230 (379)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe---CCHHHHHcCCCEEEEc
Confidence            59999997 9888777666555 33478999999987  34455556543211 135443   4678999999999975

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.23  E-value=0.33  Score=47.01  Aligned_cols=37  Identities=35%  Similarity=0.575  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+..||+|+|+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus        26 L~~~~VlivG~-GGlGs~~a~~La~~Gv-g~i~lvD~D~   62 (355)
T PRK05597         26 LFDAKVAVIGA-GGLGSPALLYLAGAGV-GHITIIDDDT   62 (355)
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            34569999998 9999999999998885 6899999874

>PRK07041 short chain dehydrogenase; Provisional

Probab=94.22  E-value=0.45  Score=42.20  Aligned_cols=107  Identities=18%  Similarity=0.225  Sum_probs=60.1

Q ss_pred             EEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-c---CCcccccc---CCCCEEEEc
Q 019519           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQAL---EDSDVVIIP  103 (340)
Q Consensus        33 IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al---~~aDiVi~~  103 (340)
                      |+||+|.+|+.++..|+..+.  +|++++.++.  .....++.. .  .++.... +   ..++.+++   ...|++|+.
T Consensus         2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~   76 (230)
T PRK07041          2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG-G--APVRTAALDITDEAAVDAFFAEAGPFDHVVIT   76 (230)
T ss_pred             eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-C--CceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence            899999999999999999887  8999998742  222223321 1  1222211 1   11222333   347999999


Q ss_pred             CCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          104 AGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       104 ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|.....   ..+   -...+..|......+.+. ......+.+++++
T Consensus        77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~-~~~~~~g~iv~~s  123 (230)
T PRK07041         77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARA-ARIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhh-hhhcCCeEEEEEC
Confidence            8864221   111   233455666666666662 2233445555544

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.19  E-value=0.57  Score=42.96  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC---------cceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL---------VSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~---------~~el~L~D~~~   64 (340)
                      ++.||.|+|+ |-+|+.++..|+..++         ..+|+|+|-+.
T Consensus        10 ~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            4579999998 9999999999987642         11999999864

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.19  E-value=0.25  Score=46.11  Aligned_cols=77  Identities=19%  Similarity=0.188  Sum_probs=34.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhc--CCCCceEEEEec-CCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGH--INTRSEVAGYMG-NDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~--~~~~~~v~~~~~-~~d~~~al~~aDiVi~~  103 (340)
                      +.||+.||. |.+-.+........+....++-+|+++ +...+..+-.  .....++...++ ..+....+++.|+|+++
T Consensus       121 p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             cceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            359999996 988777654443333334788999987 3333333322  111234444432 12333457899999998


Q ss_pred             CC
Q 019519          104 AG  105 (340)
Q Consensus       104 ag  105 (340)
                      +-
T Consensus       200 al  201 (276)
T PF03059_consen  200 AL  201 (276)
T ss_dssp             TT
T ss_pred             hh
Confidence            74

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.16  E-value=2.3  Score=40.04  Aligned_cols=36  Identities=17%  Similarity=0.221  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      ++.+.+.|+||++.+|..++..|+..|.  .|++.+.+
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~--~Vv~~~r~   41 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGA--TVYVTGRS   41 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecc
Confidence            3456889999988999999999998887  89999876

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=94.15  E-value=0.79  Score=40.93  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=25.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~   60 (340)
                      ..+.|+||+|++|++++..|+..+.  ++++.
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~   31 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY--TVAVN   31 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEE
Confidence            3689999999999999999998886  77664

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.11  E-value=0.49  Score=37.16  Aligned_cols=64  Identities=14%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +..+|.|||+ |.+|..-+..|+..+-  ++.++....   ..  ...     .++...  ..+++.++++|+|+.+.+
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA--~v~vis~~~---~~--~~~-----~i~~~~--~~~~~~l~~~~lV~~at~   69 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLLLEAGA--KVTVISPEI---EF--SEG-----LIQLIR--REFEEDLDGADLVFAATD   69 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHHCCCTB--EEEEEESSE---HH--HHT-----SCEEEE--SS-GGGCTTESEEEE-SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCch---hh--hhh-----HHHHHh--hhHHHHHhhheEEEecCC
Confidence            3569999998 9999999999998885  999998753   11  111     222221  234677999999998753

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.10  E-value=0.34  Score=46.35  Aligned_cols=98  Identities=27%  Similarity=0.360  Sum_probs=60.7

Q ss_pred             CCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        21 ~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +.+.....++++|+|. |.+|+.+|..+.  ++.-+|+.+|..+.. ...+..      ....    .++++.++.||+|
T Consensus       139 ~~~~~l~gktvGIiG~-GrIG~avA~r~~--~Fgm~v~y~~~~~~~-~~~~~~------~~~y----~~l~ell~~sDii  204 (324)
T COG1052         139 LLGFDLRGKTLGIIGL-GRIGQAVARRLK--GFGMKVLYYDRSPNP-EAEKEL------GARY----VDLDELLAESDII  204 (324)
T ss_pred             ccccCCCCCEEEEECC-CHHHHHHHHHHh--cCCCEEEEECCCCCh-HHHhhc------Ccee----ccHHHHHHhCCEE
Confidence            3444456689999998 999999999888  555599999987531 111111      1122    1257889999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++..-..  + +++.   .-|.       +.++...|.+++||.+
T Consensus       205 ~l~~Plt--~-~T~h---Lin~-------~~l~~mk~ga~lVNta  236 (324)
T COG1052         205 SLHCPLT--P-ETRH---LINA-------EELAKMKPGAILVNTA  236 (324)
T ss_pred             EEeCCCC--h-HHhh---hcCH-------HHHHhCCCCeEEEECC
Confidence            9975221  1 1111   1121       2344445788888764

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=94.10  E-value=0.13  Score=49.20  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=50.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ..++|||+ |..+..-+..+..--.+.+|.++|.++  .+..+.++...... .+...   ++.++++++||+|+.+
T Consensus       131 ~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~-~v~a~---~s~~~av~~aDiIvt~  202 (330)
T COG2423         131 STLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGE-AVGAA---DSAEEAVEGADIVVTA  202 (330)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCc-cceec---cCHHHHhhcCCEEEEe
Confidence            48999997 988777666665544578999999987  45555566554421 24332   4668999999999986

>PLN02306 hydroxypyruvate reductase

Probab=94.06  E-value=0.35  Score=47.41  Aligned_cols=102  Identities=19%  Similarity=0.269  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHH-hCCCcceEEEEeCCCcHHHH---HHHhc----CCC-CceEEEEecCCccccccCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVA---ADVGH----INT-RSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~-~~~~~~el~L~D~~~~~~~~---~dl~~----~~~-~~~v~~~~~~~d~~~al~~   96 (340)
                      ....+|+|+|. |.+|+.+|..+. .-|.  +|..||........   ..+..    ... ...+..   ..++++.++.
T Consensus       163 L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~L~ell~~  236 (386)
T PLN02306        163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKR---ASSMEEVLRE  236 (386)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccccc---cCCHHHHHhh
Confidence            45679999998 999999998874 3344  89999976421111   01110    000 011111   1467899999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ||+|++..  |..+         .+-.++-  .+.++...|++++||++=
T Consensus       237 sDiV~lh~--Plt~---------~T~~lin--~~~l~~MK~ga~lIN~aR  273 (386)
T PLN02306        237 ADVISLHP--VLDK---------TTYHLIN--KERLALMKKEAVLVNASR  273 (386)
T ss_pred             CCEEEEeC--CCCh---------hhhhhcC--HHHHHhCCCCeEEEECCC
Confidence            99999964  2211         1111111  123334457899998863

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.05  E-value=0.11  Score=47.26  Aligned_cols=74  Identities=15%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      |+|.|+||+|++|++++..|+..+.  +++..-.+......  +. ...............+..+++|.|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~--~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAA--LA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHh--hc-CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence            5899999999999999999998876  66666554322222  22 111111111112234567889999999987543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.02  E-value=0.37  Score=47.50  Aligned_cols=91  Identities=19%  Similarity=0.237  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ...+|+|+|. |.+|..++..+...+.  +|+.+|.++.+.... ..+ .+  .+      .+++++++++|+||.+.|.
T Consensus       194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~-G~--~v------~~leeal~~aDVVItaTG~  260 (406)
T TIGR00936       194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMD-GF--RV------MTMEEAAKIGDIFITATGN  260 (406)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-Hhc-CC--Ee------CCHHHHHhcCCEEEECCCC
Confidence            3469999998 9999999998887776  899999876322111 111 11  11      1235678999999987542


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                                     ..++..  +.+....+.+++++++-+
T Consensus       261 ---------------~~vI~~--~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       261 ---------------KDVIRG--EHFENMKDGAIVANIGHF  284 (406)
T ss_pred             ---------------HHHHHH--HHHhcCCCCcEEEEECCC
Confidence                           222221  122333467888888765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06046 alanine dehydrogenase; Validated

Probab=94.02  E-value=0.18  Score=48.18  Aligned_cols=70  Identities=14%  Similarity=0.296  Sum_probs=47.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+|+|+|+ |..|...+..+.....+.++.++|.+.  .+..+.++.+. ....+..+   +|++++++ +|+|+++-
T Consensus       130 ~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aT  201 (326)
T PRK06046        130 KVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTT  201 (326)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEec
Confidence            59999997 999988887776555678999999986  23334444322 12234433   46677776 99999863

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.01  E-value=0.35  Score=47.48  Aligned_cols=36  Identities=28%  Similarity=0.572  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +..||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        41 ~~~~VlviG~-GGlGs~va~~La~~Gv-g~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGA-GGLGSPTLLYLAAAGV-GTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence            4569999998 9999999999998885 5899999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-116
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-115
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-99
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		8e-99
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		3e-80
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		3e-80
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		4e-80
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		4e-79
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		5e-22
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		9e-20
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		2e-19
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		2e-19
1guz_A	310	Structural Basis For Thermophilic Protein Stability		5e-19
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		1e-18
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		2e-17
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		2e-17
1guy_A	309	Structural Basis For Thermophilic Protein Stability		2e-17
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		2e-17
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		3e-17
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		5e-15
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		2e-13
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		4e-13
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		4e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		7e-13
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		3e-12
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		3e-12
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		3e-12
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		5e-12
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		7e-12
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		8e-12
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		8e-12
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		8e-12
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		8e-12
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		1e-11
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		1e-11
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		1e-11
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		1e-11
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		2e-11
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		2e-11
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		3e-11
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		3e-11
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		5e-11
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		8e-11
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		1e-10
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		2e-10
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		2e-10
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		1e-09
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		2e-09
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		2e-09
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		3e-09
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		3e-09
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		3e-09
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		8e-09
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		1e-08
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		5e-08
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		7e-08
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		8e-08
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		8e-08
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		9e-08
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		2e-07
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		2e-07
1bmd_A	327	Determinants Of Protein Thermostability Observed In		2e-07
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		2e-07
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-07
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		3e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		4e-07
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		9e-07
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		9e-07
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		9e-07
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		1e-06
1ldb_A	317	Structure Determination And Refinement Of Bacillus		1e-06
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		2e-06
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		7e-06
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		7e-06
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		2e-05
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-05
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		4e-05
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		5e-05
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		8e-05
3d5t_A	331	Crystal Structure Of Malate Dehydrogenase From Burk		9e-05
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		1e-04
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		1e-04
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		2e-04
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		2e-04
1b8p_A	329	Malate Dehydrogenase From Aquaspirillum Arcticum Le		3e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		5e-04
7mdh_A	375	Structural Basis For Light Acitvation Of A Chloropl		7e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/335 (63%), Positives = 244/335 (72%), Gaps = 9/335 (2%)
Query: 3   SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
           SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+
Sbjct: 28  SSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV 78
Query: 63  ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
            N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INA
Sbjct: 79  VNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINA 138
Query: 123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           GIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA 
Sbjct: 139 GIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRAN 198
Query: 183 TFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
           TF                   HAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVV
Sbjct: 199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVV 258
Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
           EAKAG GSATLSMAYA   FADACL+GL G   V+EC+FV S VTELPFFASKVRLG+NG
Sbjct: 259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNG 318
Query: 303 VEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           +EEV  LGPL+++E+ GLEK K EL  SIEKGV F
Sbjct: 319 IEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/311 (65%), Positives = 235/311 (75%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
           P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G
Sbjct: 7   PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLG 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIVN+ISN
Sbjct: 67  QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF                   HAG
Sbjct: 127 PVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 186
Query: 207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266
           +TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADAC
Sbjct: 187 VTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 246
Query: 267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE 326
           L+GL G   V+EC+FV S VTELPFFASKVRLG+NG+EEV  LGPL+++E+ GLEK K E
Sbjct: 247 LRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKE 306
Query: 327 LKASIEKGVKF 337
           L  SIEKGV F
Sbjct: 307 LAGSIEKGVSF 317

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 226/308 (73%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI 209
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F                   HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 270 LNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
           +NG   VVECSFV+S  T+ P+F++ + LGK G+E+ LG+G +S FE++ + +  PELKA
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
Query: 330 SIEKGVKF 337
           SI+KG +F
Sbjct: 302 SIKKGEEF 309

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  356 bits (914), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 180/310 (58%), Positives = 225/310 (72%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
           + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G 
Sbjct: 28  NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGP 87
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A++ +I+NP
Sbjct: 88  EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANP 147
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF                   HAG 
Sbjct: 148 VNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGK 207
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TI+PL SQ TPK +   + + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +
Sbjct: 208 TIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV 267
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL 327
             +NG   VVECSFV+S  TE  +F++ + LGK G+E+ LG+G +S FE++ +    PEL
Sbjct: 268 DAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPEL 327
Query: 328 KASIEKGVKF 337
           KASI+KG  F
Sbjct: 328 KASIKKGEDF 337

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  295 bits (754), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/310 (54%), Positives = 204/310 (65%), Gaps = 5/310 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G 
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPG  R DLFN+NAGIVK L   IA  CPNA + +I+NP
Sbjct: 65  DPT-PALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TVPIAAEV KKAG Y+++KLFGVTTLDV+R++TF                   H+G+
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ       +DE+I ALTKR Q+ GTEVVEAKAG GSATLS   A   F  A +
Sbjct: 184 TILPLLSQ-VEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALV 242
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL 327
           K L G  +V+E ++V+       FFA  V+LGK GVEE+L  G LSDFE+  L+     L
Sbjct: 243 KALQG-EEVIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGXLETL 301
Query: 328 KASIEKGVKF 337
            + I+ GV F
Sbjct: 302 NSDIQIGVDF 311

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  295 bits (754), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 165/312 (52%), Positives = 204/312 (65%), Gaps = 4/312 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL 327
           + L G   VVEC++V+       FF+  + LGKNGVEE   +G LS FEQ  LE +   L
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299
Query: 328 KASIEKGVKFAN 339
           K  I  G +F N
Sbjct: 300 KKDIALGEEFVN 311

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  295 bits (754), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 165/312 (52%), Positives = 204/312 (65%), Gaps = 4/312 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL 327
           + L G   VVEC++V+       FF+  + LGKNGVEE   +G LS FEQ  LE +   L
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299
Query: 328 KASIEKGVKFAN 339
           K  I  G +F N
Sbjct: 300 KKDIALGQEFVN 311

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  291 bits (745), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/312 (52%), Positives = 203/312 (65%), Gaps = 4/312 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++ + TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL 327
           + L G   VVEC++V+       FF+  + LGKNGVEE   +G LS FEQ  LE +   L
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299
Query: 328 KASIEKGVKFAN 339
           K  I  G +F N
Sbjct: 300 KKDIALGQEFVN 311

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 154/312 (49%), Gaps = 28/312 (8%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTRSE 80
           ++  +KV+V+GA G  G   A L+    L + + L DI      T G A D+      S 
Sbjct: 5   TIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLE---ASP 59
Query: 81  VAGYMGN-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
           V G+  N     D    A  DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IAK+
Sbjct: 60  VQGFDANIIGTSDYADTA--DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
            PNAI+ +++NPV++   +   VFK+AG   E+ +     LD  R +TF           
Sbjct: 118 SPNAIIVVLTNPVDA---MTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKD 174
Query: 196 XXXXXXXXHAGITILPL----FSQATPKANLA-DEDIKALTKRTQDGGTEVVEAKAGKGS 250
                   H G  ++PL    ++   P   L   E ++A+ +RT+ GG E+V    G GS
Sbjct: 175 ITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGS 232
Query: 251 ATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
           A  + A +     +A LK    V   +     +   ++L +    V LG NG+E+++ L 
Sbjct: 233 AYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL-YLGVPVILGGNGIEKIIELE 291
Query: 311 PLSDFEQEGLEK 322
            L+D E+E L++
Sbjct: 292 LLAD-EKEALDR 302

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 154/328 (46%), Gaps = 44/328 (13%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
           +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I + +++ 
Sbjct: 15  KKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF 72
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G    +   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYCPNA V 
Sbjct: 73  G----ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVI 128
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            I+NP+++ V      FK+       K+ G++  LD  R +                   
Sbjct: 129 CITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVV 184
Query: 202 XXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
             H G  ++PL S  T           +  +    I  + K+T  GG E+VE     GSA
Sbjct: 185 GGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVEL-LKTGSA 242
Query: 252 TLSMAYAGAIFADACLKGLNGVPDVVECSFV---QSTVTELPFFASKVRLGKNGVEEVLG 308
             + A +    A A LK       V+ CS     Q  V  L F    V +GKNG+E+V+ 
Sbjct: 243 FYAPAASAVAMAQAYLK---DSKSVLVCSTYLTGQYNVNNL-FVGVPVVIGKNGIEDVV- 297
Query: 309 LGPLSDFEQ-------EGLEKLKPELKA 329
           +  LSD E+       E ++ L  +LK+
Sbjct: 298 IVNLSDDEKSLFSKSVESIQNLVQDLKS 325

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 152/333 (45%), Gaps = 49/333 (14%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+V+I AG+PRKPGMTR+DL ++NAGIV+++   I ++  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   ++K+G   E+ +     LD  R ++F                 
Sbjct: 115 VVVSNPLDIMTHVA---WQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVV----EAKAGKGSAT 252
             H G  ++P+    T    P A+L + E I  L +RT+ GG E+V    +  A    AT
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVNHLKQGSAFYSPAT 230
Query: 253 LSMAYAGAIFAD-----ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVL 307
             +    +I  D      C   L+G   +           +  F    V+LGKNGVE + 
Sbjct: 231 SVVEMVESIVLDRKRVLTCAVSLDGQYGI-----------DGTFVGVPVKLGKNGVEHIY 279
Query: 308 GLGPLSDFEQEGLEKLKPELKASIEKGVKFANA 340
            +      +Q  L+ L+   K  +++  K  +A
Sbjct: 280 EI----KLDQSDLDLLQKSAKI-VDENCKMLDA 307

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 136/312 (43%), Gaps = 36/312 (11%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
           RK   L  AG IG  LA L  +  L   + L+DIA     G A D+        V   + 
Sbjct: 5   RKKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGXPNGKALDLLQTCPIEGVDFKVR 63
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + LE+SDVVI+ AGVPRKPG +RDDL  IN  + + +   I   CPNA V  I+N
Sbjct: 64  GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXXXHA 205
           P++    I     +K     + K+ G    LD  R +TF                   H 
Sbjct: 124 PLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGH- 178
Query: 206 GITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           G T +PL            Q   +  L  E + A+  RT+ GG E+V A    GSA  + 
Sbjct: 179 GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYYAP 237
Query: 256 AYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDF 315
           A AG   A+               SF++     LP  A+KV+ G  G++E L +G  ++ 
Sbjct: 238 AAAGIQXAE---------------SFLKDKKXILP-CAAKVKAGXYGLDEDLFVGVPTEI 281
Query: 316 EQEGLEKLKPEL 327
              G+  ++ E+
Sbjct: 282 SANGVRPIEVEI 293

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 147/322 (45%), Gaps = 50/322 (15%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   + ++G   E+ +     LD  R ++F                 
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             H G  ++P+    T    P ++L   E I  L +RT++GG E+VE    +GSA  + A
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPA 229
Query: 257 YAGAIFADA----------CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEV 306
            +     ++          C  GL G   +           +  F    V+LG+NGVE++
Sbjct: 230 SSVVEMVESIVLDRKRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQI 278
Query: 307 LGLGPLSDFEQEGLEKLKPELK 328
             +    + +Q  L+ L+   K
Sbjct: 279 YEI----NLDQADLDLLQKSAK 296

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 147/322 (45%), Gaps = 50/322 (15%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G   D      VG  +T+  +
Sbjct: 2   KITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPVGLFDTK--I 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  DSD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   + ++G   E+ +     LD  R ++F                 
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             H G  ++P+    T    P ++L   E I  L +RT++GG E+VE    +GSA  + A
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPA 229
Query: 257 YAGAIFADA----------CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEV 306
            +     ++          C  GL G          Q  + +  F    V+LG+NGVE++
Sbjct: 230 SSVVEMVESIVLDRKRVLPCAVGLEG----------QYGIDK-TFVGVPVKLGRNGVEQI 278
Query: 307 LGLGPLSDFEQEGLEKLKPELK 328
             +    + +Q  L+ L+   K
Sbjct: 279 YEI----NLDQADLDLLQKSAK 296

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 10/241 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
             +  P +  +A + +  + +RT+ GG E+V      GSA  + A A A   +A LK   
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKK 245
Query: 272 GVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI 331
            V  V      Q  + ++ +F   V LG  GVE++L L PL++ E   L      ++A++
Sbjct: 246 RVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATL 303
Query: 332 E 332
           +
Sbjct: 304 D 304

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 142/300 (47%), Gaps = 30/300 (10%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVA 82
           S+   K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V 
Sbjct: 4   SMARNKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVD 58
Query: 83  GY-----MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
           G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P
Sbjct: 59  GFDAKFTGANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP 116
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
            A V  I+NP+++ V  A + F     +    + GV  LD  R + F             
Sbjct: 117 EAFVICITNPLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVT 173
Query: 198 XXXXXXHAGITILPLFSQAT----PKANL------ADEDIKALTKRTQDGGTEVVEAKAG 247
                 H G +++PL   +T    P  +L      + + +  + +RT+DGG E+V     
Sbjct: 174 VFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV-GLLK 231
Query: 248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVL 307
            GSA  + A +    A++ LK    V  V      Q  V ++ +      +G NGVE ++
Sbjct: 232 TGSAFYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDM-YVGVPTVIGANGVERII 290

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 10/241 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
             +  P +  +A + +  + +RT+ GG E+V      GSA  + A A A   +A LK   
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKK 245
Query: 272 GVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI 331
            V  V      Q  + ++ +F   V LG  GVE++L L PL++ E   L      ++A++
Sbjct: 246 RVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATL 303
Query: 332 E 332
           +
Sbjct: 304 D 304

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 10/241 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
             +  P +  +A + +  + +RT+ GG E+V      GSA  + A A A   +A LK   
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKK 245
Query: 272 GVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI 331
            V  V      Q  + ++ +F   V LG  GVE++L L PL++ E   L      ++A++
Sbjct: 246 RVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATL 303
Query: 332 E 332
           +
Sbjct: 304 D 304

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 10/241 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 --QATPKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
                P +  +A + +  + +RT+ GG E+V      GSA  + A A A   +A LK   
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKK 245
Query: 272 GVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI 331
            V  V      Q  + ++ +F   V LG  GVE++L L PL++ E   L      ++A++
Sbjct: 246 RVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATL 303
Query: 332 E 332
           +
Sbjct: 304 D 304

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 12/161 (7%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLAL----YDIANTPGVAADV--GHINTRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    + I    G+  D+      TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183
           I+NPV+  +   A V  K   +   ++FG+ T LD +R K 
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKV 157

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 129/304 (42%), Gaps = 52/304 (17%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H    +  A     
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D     L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NP
Sbjct: 61  DY--ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP 118
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           V+    +    F K    + +K+FG  T LD  R +T                    H G
Sbjct: 119 VD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-G 173
Query: 207 ITILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
            + +P++S A     P  N+         + ++   ++T+    E++E    KG+   ++
Sbjct: 174 DSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIER---KGATHYAI 230
Query: 256 AYAGAIFADACLKGLNGVPDVVECSFV-QSTVTELPFFASK------------VRLGKNG 302
           A A              V D+VE  F  +  V  L  +               V LGK+G
Sbjct: 231 ALA--------------VADIVESIFFDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHG 276
Query: 303 VEEV 306
           VE +
Sbjct: 277 VERI 280

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 30/313 (9%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
            +++NP++  V    + F +A    +  + G+   LD  R + F                
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
              H G  +LPL    T           K  + +  +  + +RT+  G E+V    G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 ATLSMAYAGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGL 309
           A  + A +    A A LK    V P  V C   +  + ++ F      +G  G+E+V+ L
Sbjct: 241 AYYAPALSAITMAQAFLKDEKRVLPCSVYCQG-EYGLHDM-FIGLPAVIGGGGIEQVIEL 298
Query: 310 GPLSDFEQEGLEK 322
             L+  EQE   K
Sbjct: 299 -ELTHEEQECFRK 310

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 30/313 (9%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
            +++NP++  V    + F +A    +  + G+   LD  R + F                
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
              H G  +LPL    T           K  + +  +  + +RT+  G E+V    G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 ATLSMAYAGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGL 309
           A  + A +    A A LK    V P  V C   +  + ++ F      +G  G+E+V+ L
Sbjct: 241 AYYAPALSAITMAQAFLKDEKRVLPCSVYCQG-EYGLHDM-FIGLPAVIGGGGIEQVIEL 298
Query: 310 GPLSDFEQEGLEK 322
             L+  EQE   K
Sbjct: 299 -ELTHEEQECFRK 310

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 135/317 (42%), Gaps = 37/317 (11%)
Query: 24  ESVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRS 79
           E V  R KVA++GA G +G   A  M L    + L L D+      G A D+ H +    
Sbjct: 2   EMVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMG 60
Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +++ Y G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + 
Sbjct: 61  QMSLYAGD---YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXX 199
           ++ ++SNPV+    I   + K +G    K +   T LD +R +                 
Sbjct: 118 VILVVSNPVD---IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGY 174
Query: 200 XXXXHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAG 247
               H G + LPL+S               PK N  +ED K + +  +  G  +++    
Sbjct: 175 IIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---N 230
Query: 248 KGSATLSMAYAGAIFADACLKGLN---GVPDVVECSF-VQSTVTELPFFASKVRLGKNGV 303
           KG+    +A +     +  LK  N    V  V+   + ++     LP   +       GV
Sbjct: 231 KGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAISLPSIVN-----SEGV 285
Query: 304 EEVLGLGPLSDFEQEGL 320
           +EVL    L+  E+E L
Sbjct: 286 QEVLQFN-LTPEEEEAL 301

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 119/282 (42%), Gaps = 32/282 (11%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+          + ++ + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 207
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E K   G+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIERK---GATEWGPARGVAHMVEAILHDTGRVLPASVKLEGEFGHEDTA---- 260
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           F   VRLG NGVEE++    L D+EQ+ +     +L    +K
Sbjct: 261 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 119/282 (42%), Gaps = 32/282 (11%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 149
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+          + ++ + L    
Sbjct: 150 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 208
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E K   G+     A   A   +A L     V P  V  E  F          
Sbjct: 209 QESAMDVIERK---GATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 261
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           F   VRLG NGVEE++    L D+EQ+ +     +L    +K
Sbjct: 262 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 119/282 (42%), Gaps = 32/282 (11%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+          + ++ + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 207
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E K   G+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIERK---GATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 260
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           F   VRLG NGVEE++    L D+EQ+ +     +L    +K
Sbjct: 261 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 131/304 (43%), Gaps = 35/304 (11%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG       RDDL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
                H    +L          PL      K  ++D +++A+  RT +   E+V   A  
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA-- 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG NGVE+
Sbjct: 234 -SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQ 288
Query: 306 VLGL 309
           V+ L
Sbjct: 289 VIEL 292

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 27/291 (9%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY--- 84
           KV V+GA G +G  +A  +    +   + + DI +    G A D   +   S + G+   
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALD---MRESSPIHGFDTR 57
Query: 85  -MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G +  G   EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 58  VTGTNDYGPT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           ++NP++    +A E    A  +   ++ G+   LD  R ++F                  
Sbjct: 117 VANPLDVMTYVAYE----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 203 XHAGITILPLFSQAT----PKANLADE-DIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
            H G T++PL    T    P   L D+  I+ + +RT+  G E+V+      SA  +   
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLMG--TSAWYAPGA 229
Query: 258 AGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEVL 307
           A A   +A LK    + P    C   +  + +L F    V+LG  GVEEV+
Sbjct: 230 AAAEMTEAILKDNKRILPCAAYCDG-EYGLDDL-FIGVPVKLGAGGVEEVI 278

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 135/308 (43%), Gaps = 43/308 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKN 301
            A   S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG N
Sbjct: 232 HA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGAN 284
Query: 302 GVEEVLGL 309
           GVE+V+ L
Sbjct: 285 GVEQVIEL 292

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 135/308 (43%), Gaps = 43/308 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKN 301
            A   S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG N
Sbjct: 231 HA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGAN 283
Query: 302 GVEEVLGL 309
           GVE+V+ L
Sbjct: 284 GVEQVIEL 291

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 135/308 (43%), Gaps = 43/308 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKN 301
            A   S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG N
Sbjct: 231 HA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGAN 283
Query: 302 GVEEVLGL 309
           GVE+V+ L
Sbjct: 284 GVEQVIEL 291

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 139/322 (43%), Gaps = 43/322 (13%)
Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYMG 86
           + +LGA G +G   A+++ +      L    IA TPG     A D+ H      V   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLL---IARTPGKPQGEALDLAHAAAELGVDIRIS 57
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + +N
Sbjct: 58  GSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PV++   +   ++KK G   E+ +     LD  R   +                   H G
Sbjct: 118 PVDAMTYV---MYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-G 173
Query: 207 ITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAK---AGKGSATLSMAYA 258
             + P+   ++    P  +L + E+I+ +   T + G ++ E +   +  G A   +   
Sbjct: 174 QKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 259 GAIFADA--------CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
            AI  D+         L+G  G  D+         V E+P       +GK+G+E ++ L 
Sbjct: 234 EAIKRDSKRIYPYSLYLQGEYGYNDI---------VAEVPAV-----IGKSGIERIIEL- 278
Query: 311 PLSDFEQEGLEKLKPELKASIE 332
           PL++ E+   ++    +K  +E
Sbjct: 279 PLTEDEKRKFDEAVQAVKKLVE 300

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 119/282 (42%), Gaps = 32/282 (11%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+ +        + ++ + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL 207
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 260
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           F   V LG NGVEE++    L D+EQ+ +     +L    +K
Sbjct: 261 FGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 131/314 (41%), Gaps = 24/314 (7%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 7   DHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 66
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P++PG TR DL N N  I+K +   I     N I  
Sbjct: 67  SAEYSDA-----KDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFL 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 122 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 178
Query: 203 XHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATLS 254
            H G T  P++S A        E +KA        L K  +D      E    KG+    
Sbjct: 179 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYG 237
Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
           +A A A  + A L   N V  +      Q  + +L +  +   + +NG++ +L + PL+D
Sbjct: 238 IATALARISKAILNDENAVLPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-PLTD 295
Query: 315 FEQEGLEKLKPELK 328
            E+E ++K   +LK
Sbjct: 296 HEEESMQKSASQLK 309

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 119/282 (42%), Gaps = 32/282 (11%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 149
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+ +        + ++ + L    
Sbjct: 150 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL 208
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 209 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 261
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           F   V LG NGVEE++    L D+EQ+ +     +L    +K
Sbjct: 262 FGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGYMGNDQL 90
           AG +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G  G D  
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--GADY- 64
Query: 91  GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150
              L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP++ 
Sbjct: 65  -SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDV 123
Query: 151 TVPIAAEVFKKAGT-YNEKKLFGV-TTLDVVRAK 182
              I   ++K++G   NE  +FG+   LD  R K
Sbjct: 124 MTYI---MWKESGKPRNE--VFGMGNQLDSQRLK 152

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 131/314 (41%), Gaps = 24/314 (7%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 67
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 68  SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179
Query: 203 XHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATLS 254
            H G T  P++S A        E +KA        L K  +D      E    KG+    
Sbjct: 180 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYG 238
Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
           +A A A  + A L   N V  +      Q  + ++ +  +   + +NG++ +L + PL+D
Sbjct: 239 IATALARISKAILNDENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTD 296
Query: 315 FEQEGLEKLKPELK 328
            E+E ++K   +LK
Sbjct: 297 HEEESMQKSASQLK 310

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 131/315 (41%), Gaps = 26/315 (8%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYM 85
           D +  +L   G +G   A  M L  +   + + DI    T G A D+       +   + 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDL------EDALPFT 61
Query: 86  GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
              ++  A     +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I 
Sbjct: 62  SPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIF 121
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            + +NPV+    +    +K +G    + +   T+LD  R +                   
Sbjct: 122 LVAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIM 178
Query: 202 XXHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATL 253
             H G T  P++S A        E +KA        L K  +D   +  E    KG+   
Sbjct: 179 GEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFY 237
Query: 254 SMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLS 313
            +A A A  + A L   N V  +      Q  + ++ +  +   + +NG++ +L + PL+
Sbjct: 238 GIATALARISKAILNDENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLT 295
Query: 314 DFEQEGLEKLKPELK 328
           D E+E ++K   +LK
Sbjct: 296 DHEEESMQKSASQLK 310

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H +      +  +
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V  I+
Sbjct: 63  GTDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121
Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
           NP++    +    F+K       K+ G+   LD  R +TF
Sbjct: 122 NPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  GT--NDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
            I+NP++    +    F+K       K+ G+   LD  R +TF
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 26  VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD--IANTPGVAADVGHINTRSEVAG 83
           + + K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H        G
Sbjct: 6   LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH-------CG 58
Query: 84  YMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           + G        + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+
Sbjct: 59  FEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 139 A-IVNMISNPVNST 151
              V +I NP + T
Sbjct: 119 CKHVIIIFNPADIT 132

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 130/304 (42%), Gaps = 35/304 (11%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG       R DL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
                H    +L          PL      K  ++D +++A+  RT +   E+V   A  
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA-- 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG NGVE+
Sbjct: 234 -SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQ 288
Query: 306 VLGL 309
           V+ L
Sbjct: 289 VIEL 292

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 131/302 (43%), Gaps = 31/302 (10%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + ++DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L+D+DVVI+ AG  + PG       RDDL  +N  I+ ++   I   CPNA
Sbjct: 61  VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
                H    +L          PL  +      + D+++ A+  RT +   E+V   A  
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDQELDAIFDRTINTALEIVNLHA-- 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFA-SKVRLGKNGVEEVL 307
            S  ++ A A    A++ ++ L  V  ++  + ++        FA + + +G NGVE+V+
Sbjct: 234 -SPYVAPAAAIIEMAESYIRDLRKV--LICSTLLEGQYGHKDIFAGTPLVIGGNGVEQVI 290
Query: 308 GL 309
            L
Sbjct: 291 EL 292

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 132/308 (42%), Gaps = 43/308 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+    +  ++  +     + K+ G+   LD  R K +          
Sbjct: 117 CPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKN 301
            A    A  +        A++ LK L  V     ++E  +  S +    F  + V LG N
Sbjct: 232 HAAPYVAPAAAIIE---MAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGAN 284
Query: 302 GVEEVLGL 309
           GVE+V+ L
Sbjct: 285 GVEQVIEL 292

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 134/322 (41%), Gaps = 28/322 (8%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVA 82
           +V   K+AV+GA G +G  LA       +   + L DIA         D+ H ++     
Sbjct: 4   TVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTV 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
              G+D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  
Sbjct: 63  SIDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
           +I+NPV+    IA  V +K     E ++FG  T LD  R +                   
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177
Query: 202 XXHAGITILPLFSQAT------------PKANLADEDIK-ALTKRTQDGGTEVVEAKAGK 248
             H G + +PL+  AT            P  +  D D +  + +  ++   +++    GK
Sbjct: 178 GEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GK 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG 308
           G+   ++  +G    +A L   N +  V         ++++   +    L + GV   + 
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDI-CMSVPTLLNRQGVNNTIN 292
Query: 309 LGPLSDFEQEGLEKLKPELKAS 330
             P+SD E   L++    LK +
Sbjct: 293 T-PVSDKELAALKRSAETLKET 313

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 41/307 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + ++D+  N P G A D  H N    +  +
Sbjct: 2   PKPKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDVVKNMPQGKALDTSHSNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I   
Sbjct: 60  VTGSNSYDDLKGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNL 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
           CPNA + +++NPV+  V +   +F+ +G    K +     LD  R K +           
Sbjct: 116 CPNAFIIVVTNPVDVMVQL---LFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRD 172
Query: 196 XXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                   H    +L          PL  +      + DE+++ +  RT +   E+V   
Sbjct: 173 VNALIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDEEVEGIFDRTVNTALEIVNLL 231
Query: 246 AGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKNG 302
           A   S  ++ A A    A++ LK +  V     ++E  +  S +    F  + + +G  G
Sbjct: 232 A---SPYVAPAAAIIEMAESYLKDIKKVLVCSTLLEGQYGHSNI----FGGTPLVIGGTG 284
Query: 303 VEEVLGL 309
           VE+V+ L
Sbjct: 285 VEQVIEL 291

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMCE 144

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 66  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 126 IIVVTNPLDCMVKVMCE 142

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 137/333 (41%), Gaps = 35/333 (10%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EHVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRT 73
Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V+G    D    A  +S +VII AG  ++ G +R +L   N  I K +   + KY P
Sbjct: 74  PKIVSG---KDYSVTA--NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP 128
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
           +  + ++SNPV+    +A   +K +G    + +     LD  R +               
Sbjct: 129 HCKLLVVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCH 185
Query: 198 XXXXXXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                 H             AG+++  L  +    A+   E  K + K+  D   EV++ 
Sbjct: 186 GWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDAD--KEQWKQVHKQVVDSAYEVIKL 243
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
              KG  T ++  + A  A++ +K L  V  +         + E  F +    LG+NG+ 
Sbjct: 244 ---KGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGIS 300
Query: 305 EVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           +V+ +   S  E+E   K   +    I+K ++F
Sbjct: 301 DVVKVTLTS--EEEAHLKKSADTLWGIQKELQF 331

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMXE 144

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 138/333 (41%), Gaps = 35/333 (10%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   +AL D+      G   D+ H    + T
Sbjct: 16  EHVPHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRT 74
Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V+G   N        +S +V+I AG  ++ G +R +L   N  I K +   I KY P
Sbjct: 75  PKIVSGKDYN-----VTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSP 129
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
           N  + ++SNPV+    +A   +K +G    + +     LD  R +               
Sbjct: 130 NCKLLVVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCH 186
Query: 198 XXXXXXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                 H             AG+++  L  +    A+   E  KA+ K   D   EV++ 
Sbjct: 187 GWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDAD--KEHWKAVHKEVVDSAYEVIKL 244
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
              KG  + ++  + A  A++ +K L  V  +         + E  F +    LG+NG+ 
Sbjct: 245 ---KGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGIS 301
Query: 305 EVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           +V+ +  L+  E+  L+K    L   I+K ++F
Sbjct: 302 DVVKV-TLTPEEEAHLKKSADTL-WGIQKELQF 332

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 114/286 (39%), Gaps = 28/286 (9%)
Query: 50  LNPLVSRLALYDIANTP--GVAADVGH----INTRSEVAGYMGNDQLGQALEDSDVVIIP 103
           L  L   LAL D+      G A D+ H    + T   VA     D+      +S VV++ 
Sbjct: 41  LKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVA-----DKDYSVTANSKVVVVT 95
Query: 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163
           AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K +G
Sbjct: 96  AGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSG 152
Query: 164 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH--------AGITILPLFSQ 215
               + +   T LD  R +                     H        +G+ +  +F Q
Sbjct: 153 LPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQ 212
Query: 216 ATPKANLAD---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 272
                   D   ED K++ K   D   EV++    KG  + ++  + A    + LK L  
Sbjct: 213 GLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKL---KGYTSWAIGMSAADLCQSILKNLRK 269
Query: 273 VPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQE 318
              V         V E  F +    LG +G+ +V+ +   SD E++
Sbjct: 270 CHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHMTLKSDEEKQ 315

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 128/297 (43%), Gaps = 34/297 (11%)
Query: 45  ALLMKLNPLVSRLALYDIANTP--GVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVV 100
           A+ + L  L   LA+ D+      G   D+ H  +  ++++ G    D+      +S VV
Sbjct: 36  AISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFLKTKIVG----DKDYSVTANSKVV 91
Query: 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
           ++ AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K
Sbjct: 92  VVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA---WK 148
Query: 161 KAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH-------------AGI 207
            +G    + +   T LD  R +                     H             AG+
Sbjct: 149 LSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEHGDSSVPVWSGVNVAGV 208
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           ++  L  Q   + +   E+ KA+ K   DG  EV++    KG  + ++  + A   ++ +
Sbjct: 209 SLQGLNPQMGTEGD--GENWKAIHKEVVDGAYEVIKL---KGYTSWAIGMSVADLVESII 263
Query: 268 KGLNGVPDVVECSFVQST--VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           K ++ V  V   + VQ    V +  F +    LG +G+ +V+ +  L   E++ L+K
Sbjct: 264 KNMHKVHPV--STLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHM-TLKAEEEKQLQK 317

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
           ++PD K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   +  
Sbjct: 18  TIPDNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTP 76
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             + N        +S +V++ AGV ++ G +R +L   N  + K +   I KY PN I+ 
Sbjct: 77  KIVANKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIII 135
Query: 143 MISNPVNSTVPIAAEV 158
           ++SNPV+    +A ++
Sbjct: 136 VVSNPVDILTYVAWKL 151

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 129/303 (42%), Gaps = 29/303 (9%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+     D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +A   +K +G   E+ +   T LD  R +                     H G 
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQAT----PKANLADE------DIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           T LP++S A     P   L ++       I+ +  +T+D   ++++A   KG+    +A 
Sbjct: 182 TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQA---KGATYYGVAM 238
Query: 258 AGAIFADACLKGLNGVPDV---VECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
             A   +A  +  + V  V   +E  + +  V    +      + +NG+  V+ + PL+D
Sbjct: 239 GLARITEAIFRNEDAVLTVSALLEGEYEEEDV----YIGVPAVINRNGIRNVVEI-PLND 293
Query: 315 FEQ 317
            EQ
Sbjct: 294 EEQ 296

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 134/329 (40%), Gaps = 27/329 (8%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV 81
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   + 
Sbjct: 16  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 74
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
              + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   +
Sbjct: 75  PKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKL 133
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNPV+    +A   +K +G    + +     LD  R +                   
Sbjct: 134 LIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 190
Query: 202 XXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
             H             AG+++  L  Q    A+   E  K + K+  D   EV++    K
Sbjct: 191 GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKL---K 245
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG 308
           G  + ++  + A  A++ +K L  V  +         + E  F +    LG+NG+ +V+ 
Sbjct: 246 GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK 305
Query: 309 LGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           +    D E+  L+K    L   I+K ++F
Sbjct: 306 VTLTPD-EEARLKKSADTL-WGIQKELQF 332

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 129/303 (42%), Gaps = 29/303 (9%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+     D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +A   +K +G   E+ +   T LD  R +                     H G 
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQAT----PKANLADE------DIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           T LP++S A     P   L ++       I+ +  +T+D   ++++A   KG+    +A 
Sbjct: 182 TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQA---KGATYYGVAM 238
Query: 258 AGAIFADACLKGLNGVPDV---VECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
             A   +A  +  + V  V   +E  + +  V    +      + +NG+  V+ + PL+D
Sbjct: 239 GLARITEAIFRNEDAVLTVSALLEGEYEEEDV----YIGVPAVINRNGIRNVVEI-PLND 293
Query: 315 FEQ 317
            EQ
Sbjct: 294 EEQ 296

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 134/329 (40%), Gaps = 27/329 (8%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV 81
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   + 
Sbjct: 15  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
              + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   +
Sbjct: 74  PKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKL 132
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNPV+    +A   +K +G    + +     LD  R +                   
Sbjct: 133 LIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 202 XXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
             H             AG+++  L  Q    A+   E  K + K+  D   EV++    K
Sbjct: 190 GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKL---K 244
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG 308
           G  + ++  + A  A++ +K L  V  +         + E  F +    LG+NG+ +V+ 
Sbjct: 245 GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK 304
Query: 309 LGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           +    D E+  L+K    L   I+K ++F
Sbjct: 305 VTLTPD-EEARLKKSADTL-WGIQKELQF 331

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 136/332 (40%), Gaps = 33/332 (9%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRT 73
Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY P
Sbjct: 74  PKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP 128
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
           N  + ++SNPV+    +A   +K +G    + +     LD  R +               
Sbjct: 129 NCKLLIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCH 185
Query: 198 XXXXXXHAGITILPLF--------SQATPKANLA----DEDIKALTKRTQDGGTEVVEAK 245
                 H G + +P++        S  T   +L      E  K + K+  +   EV++  
Sbjct: 186 GWVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKL- 243
Query: 246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             KG  + ++  + A  A++ +K L  V  V         + +  F +    LG+NG+ +
Sbjct: 244 --KGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISD 301
Query: 306 VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           ++ +   S  E+E   K   +    I+K ++F
Sbjct: 302 LVKVTLTS--EEEARLKKSADTLWGIQKELQF 331

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 136/332 (40%), Gaps = 33/332 (9%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRT 73
Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY P
Sbjct: 74  PKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP 128
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
           N  + ++SNPV+    +A   +K +G    + +     LD  R +               
Sbjct: 129 NCKLLIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCH 185
Query: 198 XXXXXXHAGITILPLF--------SQATPKANLA----DEDIKALTKRTQDGGTEVVEAK 245
                 H G + +P++        S  T   +L      E  K + K+  +   EV++  
Sbjct: 186 GWVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKL- 243
Query: 246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             KG  + ++  + A  A++ +K L  V  V         + +  F +    LG+NG+ +
Sbjct: 244 --KGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISD 301
Query: 306 VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           ++ +   S  E+E   K   +    I+K ++F
Sbjct: 302 LVKVTLTS--EEEARLKKSADTLWGIQKELQF 331

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P++ +L    + +     A  G +    +  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL----LGSERSFQALEGVVMELEDCA 61
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+   
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
             + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 154 IAAEV 158
           +A ++
Sbjct: 125 LATQL 129

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
            I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 134/338 (39%), Gaps = 28/338 (8%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 7   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 65
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 66  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 120
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
           +   I K+ P+ I+ ++SNPV+    +A   +K +G    + +     LD  R +     
Sbjct: 121 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 177
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
                           H        +G+ +  +        N   +D K L K   D   
Sbjct: 178 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 237
Query: 240 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
           EV++    KG  + ++  + A  A+  +K L  V  V         + +  F +    L 
Sbjct: 238 EVIKL---KGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN 294
Query: 300 KNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
            +G+  ++ +  L   E++ L+K    L   I+K +KF
Sbjct: 295 DHGISNIVKM-KLKPNEEQQLQKSATTL-WDIQKDLKF 330

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 134/338 (39%), Gaps = 28/338 (8%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 6   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 64
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 65  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 119
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
           +   I K+ P+ I+ ++SNPV+    +A   +K +G    + +     LD  R +     
Sbjct: 120 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 176
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
                           H        +G+ +  +        N   +D K L K   D   
Sbjct: 177 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 236
Query: 240 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
           EV++    KG  + ++  + A  A+  +K L  V  V         + +  F +    L 
Sbjct: 237 EVIKL---KGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN 293
Query: 300 KNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
            +G+  ++ +  L   E++ L+K    L   I+K +KF
Sbjct: 294 DHGISNIVKM-KLKPNEEQQLQKSATTL-WDIQKDLKF 329

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
            I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 22/251 (8%)
Query: 95  EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI 154
            D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    +
Sbjct: 73  RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---IL 129
Query: 155 AAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFS 214
               +K +G  +E+ +   T LD  R +                     H G T LP++S
Sbjct: 130 TYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWS 188
Query: 215 QA-----------TPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA 263
           QA             K   A +D++ +    +D   +++E    KG+    +A   A   
Sbjct: 189 QAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEK---KGATYYGIAMGLARVT 245
Query: 264 DACLKGLNGVPDVVECSFVQSTVTELP-FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
            A L   N +  V   +++     E   +      + +NG+ EV+ +  L+D E+     
Sbjct: 246 RAILHNENAILTV--SAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHH 302
Query: 323 LKPELKASIEK 333
               LK+ + +
Sbjct: 303 SAATLKSVLAR 313

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 22/251 (8%)
Query: 95  EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI 154
            D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    +
Sbjct: 73  RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---IL 129
Query: 155 AAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFS 214
               +K +G  +E+ +   T LD  R +                     H G T LP++S
Sbjct: 130 TYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWS 188
Query: 215 QA-----------TPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA 263
           QA             K   A +D++ +    +D   +++E    KG+    +A   A   
Sbjct: 189 QAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEK---KGATYYGIAMGLARVT 245
Query: 264 DACLKGLNGVPDVVECSFVQSTVTELP-FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
            A L   N +  V   +++     E   +      + +NG+ EV+ +  L+D E+     
Sbjct: 246 RAILHNENAILTV--SAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHH 302
Query: 323 LKPELKASIEK 333
               LK+ + +
Sbjct: 303 SAATLKSVLAR 313

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 6   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 61
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 62  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK
Sbjct: 122 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 164

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 60
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 163

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVA 82
           S+P+ +  VL   G +G   A  M    +     + D+    T G A D+      +   
Sbjct: 1   SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPK 60
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
                +      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 61  KIYSGEY--SDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           + +NPV+    +    +K +G   E+ +   T+LD  R +
Sbjct: 119 VAANPVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLR 155

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 22/258 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
            KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A      
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKT 63
Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +N
Sbjct: 64  SYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PV+    +    +K +G   E+ +   TTLD  R +                     H G
Sbjct: 124 PVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-G 179
Query: 207 ITILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
            T LP++S A     P + L +       E++  +    ++    ++E    KG+    +
Sbjct: 180 DTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGV 236
Query: 256 AYAGAIFADACLKGLNGV 273
           A + A    A L   N +
Sbjct: 237 AMSLARITKAILHNENSI 254

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 22/258 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
            KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A      
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKT 63
Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +N
Sbjct: 64  SYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PV+    +    +K +G   E+ +   TTLD  R +                     H G
Sbjct: 124 PVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-G 179
Query: 207 ITILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
            T LP++S A     P + L +       E++  +    ++    ++E    KG+    +
Sbjct: 180 DTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGV 236
Query: 256 AYAGAIFADACLKGLNGV 273
           A + A    A L   N +
Sbjct: 237 AMSLARITKAILHNENSI 254

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANTPGVAADVGHINTRSEVAGY 84
           KVAV GAAG IG  L  L+    L+       L L DI   P + A  G +    E   +
Sbjct: 26  KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDI--EPALKALAG-VEAELEDCAF 82
Query: 85  MGNDQL------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CP 137
              D++        A +   + I+    PRK GM R DL  +NA I K+   AIA     
Sbjct: 83  PLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAAS 142
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFGVTTLDVVRAKTF 184
           +  V ++ NP N+   I   + K A G  N + +  +T LD  RA + 
Sbjct: 143 DCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRLDHNRALSL 187

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  +D++  ++    PR PGM R DL +IN  I  +   A+ A   PN  V ++ NP N+
Sbjct: 114 EIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNT 173
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              I     K A     K    +T LD  RAK
Sbjct: 174 NALIC---LKNAPNIPPKNFHALTRLDENRAK 202

>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 20  GYSSESVPDRKVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDI----ANTPGV 68
           G  S + P ++VAV GAAG I   L        LL K  P++  L L D+    A   GV
Sbjct: 1   GPGSMAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVI--LQLLDLPQAQAAVKGV 58
Query: 69  AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDL 128
             ++        +AG +  D    A +D+DV ++    PR  GM R DL + NA I    
Sbjct: 59  VMELDDC-AFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQ 117
Query: 129 CSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
            +A+ +     + V ++ NP N+   IA    K A    +K    +  LD  RA
Sbjct: 118 GAALNEVASRDVKVLVVGNPANTNAYIA---MKSAPDLPKKNFTAMLRLDHNRA 168

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 132/329 (40%), Gaps = 39/329 (11%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGH----INTRSEVA 82
           K+ V+G  G +G   A+ + L  L   LAL D A+T    G A D+ H    ++T   V 
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVD-ADTDKLRGEALDLQHGSLFLSTPKIVF 78
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   N        +S +VII AG     G TR DL   N  I+K +   + +  P+  + 
Sbjct: 79  GKDYN-----VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKII 133
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
           +++NPV+    I   V  K   +   ++ G    LD  R +                   
Sbjct: 134 VVTNPVD----ILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVL 189
Query: 202 XXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
             H             AG+T+  L        N   +  K + K+  +GG EV++    K
Sbjct: 190 GEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKN--KQHWKNVHKQVVEGGYEVLDM---K 244
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG 308
           G  + ++  +    A + LK L  V  V         + E  F +    LG++G+ + + 
Sbjct: 245 GYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVK 304
Query: 309 LGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           +   +  E+EGL K   +   +++K ++ 
Sbjct: 305 VNMTA--EEEGLLKKSADTLWNMQKNLEL 331

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 19/246 (7%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITIL--- 210
           +A   ++ +G    + +   T LD  R +                     H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 211 -------PLFSQATPK-ANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIF 262
                  PL   A  + A L+ ED   + +  +     ++E   GKG+    +    A  
Sbjct: 182 SAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 263 ADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
             A L    GV  V   +     V E+     ++ LG  GVE  +    LS  E+E L +
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVEGTV-YPSLSPEEREALRR 296
Query: 323 LKPELK 328
               LK
Sbjct: 297 SAEILK 302

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 26/257 (10%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITIL--- 210
           +A   ++ +G    + +   T LD  R +                     H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 211 -------PL--FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI 261
                  PL  F++A  +A L+ ED   + +  +     ++E   GKG+    +    A 
Sbjct: 182 SAQVGGVPLLEFAEARGRA-LSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLAR 237
Query: 262 FADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321
              A L    GV  V   +     V E+     ++ LG  GVE  +    LS  E+E L 
Sbjct: 238 LVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVEGTV-YPSLSPEEREALR 295
Query: 322 KLKPELKASIEKGVKFA 338
           +      A I K   FA
Sbjct: 296 R-----SAEILKEAAFA 307

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 21/247 (8%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITIL--- 210
           +A   ++ +G    + +   T LD  R +                     H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 211 -------PL--FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI 261
                  PL  F++A  +A L+ ED   + +  +     ++E   GKG+    +    A 
Sbjct: 182 SAQVGGVPLLEFAEARGRA-LSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLAR 237
Query: 262 FADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321
              A L    GV  V   +     V E+     ++ LG  GVE  +    LS  E+E L 
Sbjct: 238 LVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVEGTV-YPSLSPEEREALR 295
Query: 322 KLKPELK 328
           +    LK
Sbjct: 296 RSAEILK 302

>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG I   L        +L K  P++  L L +I N     A  G +    +  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYC 136
              +AG   +     A +D+DV ++    PR PGM R DL   NA I      AI A   
Sbjct: 65  FPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVAS 124
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
            N  V ++ NP N+   IA    K A +   K    +  LD  RA
Sbjct: 125 RNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRA 166

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IA 155
           +A
Sbjct: 125 VA 126

>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  ED D  ++    PR PGM R  L +IN  I  D   A+ A    N  V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              I     K A     K    +T LD  RAK
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAK 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-180
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-178
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-170
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	3e-59
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-49
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	1e-48
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	3e-48
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	4e-48
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	1e-47
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	2e-47
3tl2_A	315	Malate dehydrogenase; center for structural genomi	3e-47
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	3e-47
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	4e-47
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	3e-46
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	5e-46
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	6e-46
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	9e-46
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	1e-45
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	1e-45
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	5e-45
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	7e-45
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	7e-45
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	2e-44
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	2e-44
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	3e-44
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	4e-44
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	5e-44
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	7e-43
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	3e-42
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	6e-41
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	1e-39
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-39
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	2e-39
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	1e-37
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	1e-37
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	3e-37
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	7e-09
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	4e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	1e-06
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  501 bits (1293), Expect = e-180
 Identities = 213/319 (66%), Positives = 249/319 (78%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           +    P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V
Sbjct: 2   AKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIV
Sbjct: 62  RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIV 121

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           N+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A    ++  +V+VPVV
Sbjct: 122 NLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 181

Query: 202 GGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI 261
           GGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMAYA   
Sbjct: 182 GGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVK 241

Query: 262 FADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321
           FADACL+GL G   V+EC+FV S VTELPFFASKVRLG+NG+EEV  LGPL+++E+ GLE
Sbjct: 242 FADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLE 301

Query: 322 KLKPELKASIEKGVKFANA 340
           K K EL  SIEKGV F  +
Sbjct: 302 KAKKELAGSIEKGVSFIRS 320

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  495 bits (1277), Expect = e-178
 Identities = 188/310 (60%), Positives = 238/310 (76%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F A    ++ A V+VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 270 LNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
           +NG   VVECSFV+S  T+ P+F++ + LGK G+E+ LG+G +S FE++ + +  PELKA
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301

Query: 330 SIEKGVKFAN 339
           SI+KG +F  
Sbjct: 302 SIKKGEEFVK 311

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  475 bits (1224), Expect = e-170
 Identities = 172/312 (55%), Positives = 213/312 (68%), Gaps = 4/312 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A        EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL 327
           + L G   VVEC++V+       FF+  + LGKNGVEE   +G LS FEQ  LE +   L
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299

Query: 328 KASIEKGVKFAN 339
           K  I  G +F N
Sbjct: 300 KKDIALGEEFVN 311

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  193 bits (492), Expect = 3e-59
 Identities = 77/318 (24%), Positives = 123/318 (38%), Gaps = 25/318 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGYMG 86
            K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H     E      
Sbjct: 9   EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH--CGFEGLNLTF 66

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMIS 145
              + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+   V +I 
Sbjct: 67  TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGH 204
           NP + T  +       +G     ++  +  LD  R ++  A    +  + V N    GGH
Sbjct: 127 NPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH 182

Query: 205 AGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
            G  +    S A               L +E    L +R   GG  +++ +    S+  S
Sbjct: 183 -GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQS 239

Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
            +Y       A + G           +V     E    A +  + K+GV+        ++
Sbjct: 240 PSYVSIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNE 297

Query: 315 FEQEGLEKLKPELKASIE 332
            E+  L++    L    +
Sbjct: 298 AERAALKESYSHLAKLRD 315

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  166 bits (424), Expect = 2e-49
 Identities = 86/328 (26%), Positives = 138/328 (42%), Gaps = 52/328 (15%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYM 85
           KV+V+GAAG +G      + L  +   +   DI +        AAD  H         Y 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH------GIAYD 55

Query: 86  GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            N ++ Q        SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I 
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
              SNPV+    +      +AG  + +++ G    LD  R +   + + +  V  V   +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 201 VGGHAGITILPLFSQAT---PKANLADEDIKALTKRTQDGGTEVVEAKA----GKGSATL 253
           +G H G   +P+FS+ +        + ++ + L    Q+   +V+E K     G      
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVA 230

Query: 254 SMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            M    AI  D          L+G  G  D                F   V LG NGVEE
Sbjct: 231 HM--VEAILHDTGEVLPASVKLEGEFGHEDT--------------AFGVPVSLGSNGVEE 274

Query: 306 VLGLGPLSDFEQEGLEKLKPELKASIEK 333
           ++    L D+EQ+ +     +L    +K
Sbjct: 275 IVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  164 bits (419), Expect = 1e-48
 Identities = 91/329 (27%), Positives = 148/329 (44%), Gaps = 52/329 (15%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           KV V+GA G +G  +A  +    +   + + DI +    G A D+          + V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND      EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 61  --TNDY--GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NP++    +   V  +A  +   ++ G+   LD  R ++F A + +V+V +V   ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 203 GHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G T++PL    T    P   L D   I+ + +RT+  G E+V+      SA  +   
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229

Query: 258 AG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
           A      AI  D        A   G  G+ D+              F    V+LG  GVE
Sbjct: 230 AAAEMTEAILKDNKRILPCAAYCDGEYGLDDL--------------FIGVPVKLGAGGVE 275

Query: 305 EVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           EV+ +  L   E+  L+     + ++++ 
Sbjct: 276 EVIEV-DLDADEKAQLKTSAGHVHSNLDD 303

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  163 bits (415), Expect = 3e-48
 Identities = 97/329 (29%), Positives = 156/329 (47%), Gaps = 51/329 (15%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+ V+GA G +G   A  +    L   L L D+      G A D+          ++V G
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND       +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ +
Sbjct: 61  --SNDY--ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           +SNP++    I   V        ++++ G+   LD  R ++F A +  V++ ++N  V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172

Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G  ++P+    T    P ++L   E I  L +RT++GG E+VE    +GSA  + A 
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPAS 230

Query: 258 AG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
           +      +I  D          L+G  G+                 F    V+LG+NGVE
Sbjct: 231 SVVEMVESIVLDRKRVLPCAVGLEGQYGIDKT--------------FVGVPVKLGRNGVE 276

Query: 305 EVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           ++  +  L   + + L+K    +  + + 
Sbjct: 277 QIYEI-NLDQADLDLLQKSAKIVDENCKM 304

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  163 bits (415), Expect = 4e-48
 Identities = 82/333 (24%), Positives = 142/333 (42%), Gaps = 54/333 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGH----INTRSEV 81
           KV ++GA+G +G   ALL+   P +  L L    +      G+  D+        + + +
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
                 +   + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I 
Sbjct: 62  YVESDENL--RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            +I+NPV+    +          +   ++FG+ T LD +R K   A    V++ EV   +
Sbjct: 120 -VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRI 174

Query: 201 VGGHAGITILPLFSQATPK-------ANLADEDIKALTKRTQDGGTEVVEAKA----GKG 249
           +G H G +++PL S  +             +  I  + +  +  G +++  K     G  
Sbjct: 175 IGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPA 233

Query: 250 SATLSMAYAGAIFAD--------ACLKGL-NGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           +A L++     I  +        A + G  +G+ DV                   V++G+
Sbjct: 234 AAILNV--VRCIVNNEKRLLTLSAYVDGEFDGIRDV--------------CIGVPVKIGR 277

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           +G+EEV+ +  L   E     K    +K   E+
Sbjct: 278 DGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 309

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  162 bits (412), Expect = 1e-47
 Identities = 71/337 (21%), Positives = 139/337 (41%), Gaps = 58/337 (17%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M    +     + D+    T G A D+           +  
Sbjct: 6   QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED------AQAFTA 58

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 59  PKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + +NPV+    I      K   + ++++ G  T+LD  R +     + NV+   V+  ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA----G 247
           G H G +    +S AT           +  ++D+D+  L    ++   +++  K     G
Sbjct: 175 GEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYG 233

Query: 248 KGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
            G+A + +  + AI  D        A + G  G+ D+              +  +   +G
Sbjct: 234 IGTALMRI--SKAILRDENAVLPVGAYMDGQYGLNDI--------------YIGTPAIIG 277

Query: 300 KNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
             G+++++   PLS  E + ++     LK  +  G+ 
Sbjct: 278 GTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGLA 313

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  161 bits (411), Expect = 2e-47
 Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 57/335 (17%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   +D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  G--TDDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++    +    F+K       K+ G+   LD  R +TF A    VN ++V+  V+
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G  ++P  S  +           +  +  E I  +   T+    EV +     G+A
Sbjct: 175 GGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTA 232

Query: 252 TLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
             + A A      A   D        A      GV  +              +      +
Sbjct: 233 YFAPAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGI--------------YMGVPTII 278

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           GKNGVE++L L  L+  EQ+ L +   E+    + 
Sbjct: 279 GKNGVEDILEL-DLTPLEQKLLGESINEVNTISKV 312

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  161 bits (409), Expect = 3e-47
 Identities = 97/339 (28%), Positives = 160/339 (47%), Gaps = 54/339 (15%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH--- 74
           ++ ++  +KV+V+GA G  G   A L+    L + + L DI            D+     
Sbjct: 2   NAMTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASP 59

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                + + G   +D       DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IA
Sbjct: 60  VQGFDANIIG--TSDY--ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIA 115

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ PNAI+ +++NPV+           K   + ++++ G    LD  R +TF A + N++
Sbjct: 116 KHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLS 171

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAG 247
           V ++   V+GGH G  ++PL   +     P   L   E ++A+ +RT+ GG E+V    G
Sbjct: 172 VKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLG 229

Query: 248 KGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
            GSA  + A +      AI  D        A L+G  G  D+              +   
Sbjct: 230 NGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL--------------YLGV 275

Query: 295 KVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
            V LG NG+E+++ L  L   E+E L++    ++  ++ 
Sbjct: 276 PVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNVMKV 313

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  160 bits (408), Expect = 3e-47
 Identities = 91/330 (27%), Positives = 153/330 (46%), Gaps = 52/330 (15%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K++++GA G +G   A  +    L   + L DI      G A D+            V 
Sbjct: 3   KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   N+       +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ 
Sbjct: 61  G--TNNY--ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 116

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           M++NP++        +  +   + ++++ G    LD  R +TF A +A V+V +V   ++
Sbjct: 117 MVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLM 172

Query: 202 GGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           GGH G  ++PL   +     P +   A + +  + +RT+ GG E+V      GSA  + A
Sbjct: 173 GGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPA 230

Query: 257 YAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGV 303
            A      A+  D        A L G  G+ D+              +F   V LG  GV
Sbjct: 231 AATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDI--------------YFGVPVILGAGGV 276

Query: 304 EEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           E++L L PL++ E   L      ++A+++ 
Sbjct: 277 EKILEL-PLNEEEMALLNASAKAVRATLDT 305

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  161 bits (409), Expect = 4e-47
 Identities = 101/341 (29%), Positives = 157/341 (46%), Gaps = 57/341 (16%)

Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
           +  +  +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I 
Sbjct: 9   NTVIMRKKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIG 66

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           + +++ G   N+   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYC
Sbjct: 67  SPAKIFG--ENNY--EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
           PNA V  I+NP++         FK+       K+ G+   LD  R +   +    V  ++
Sbjct: 123 PNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSD 178

Query: 196 VNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
           V+  VVGGH G  ++PL S  T           +  +    I  + K+T  GG E+VE  
Sbjct: 179 VSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL 237

Query: 246 AGKGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFF 292
              GSA  + A +      A   D          L G   V ++              F 
Sbjct: 238 -KTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL--------------FV 282

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
              V +GKNG+E+V+ +  LSD E+    K    ++  ++ 
Sbjct: 283 GVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQNLVQD 322

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  158 bits (402), Expect = 3e-46
 Identities = 97/335 (28%), Positives = 150/335 (44%), Gaps = 57/335 (17%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+A++G+ G IG  LA L  L  L   + L+DIA     G   D+          ++  
Sbjct: 8   NKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT 65

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V 
Sbjct: 66  G--ANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++          +K       K+ G+   LD  R + F + + NV+V +V V V+
Sbjct: 122 CITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G +++PL   +T               + + +  + +RT+DGG E+V      GSA
Sbjct: 178 GGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSA 235

Query: 252 TLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
             + A +      +   D        A L G  GV D+              +      +
Sbjct: 236 FYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDM--------------YVGVPTVI 281

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           G NGVE ++ +  L   E+   +K    +    E 
Sbjct: 282 GANGVERIIEI-DLDKDEKAQFDKSVASVAGLCEA 315

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  158 bits (401), Expect = 5e-46
 Identities = 76/336 (22%), Positives = 129/336 (38%), Gaps = 61/336 (18%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KV ++G  G +G   A  +    +V  L + D+      G   D+ H         R +
Sbjct: 7   NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I K +   +     + I
Sbjct: 66  AGEY-------SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I A    K     ++++ G  T LD  R +   +   +V    V+  
Sbjct: 119 FLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQ 174

Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA--- 246
           ++G H G T LP++S A            +       I+ +  +T+D   ++++AK    
Sbjct: 175 IIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATY 233

Query: 247 -GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVR 297
            G       +    AIF +        A L+G     DV              +      
Sbjct: 234 YGVAMGLARI--TEAIFRNEDAVLTVSALLEGEYEEEDV--------------YIGVPAV 277

Query: 298 LGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           + +NG+  V+ + PL+D EQ         LK  + +
Sbjct: 278 INRNGIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAE 312

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  157 bits (400), Expect = 6e-46
 Identities = 78/328 (23%), Positives = 137/328 (41%), Gaps = 53/328 (16%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGY 84
           + +LGA G +G   A+++ +      L L         G A D+ H    +     ++G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG- 58

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             N    + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + 
Sbjct: 59  -SNSY--EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           +NPV+        V  K   +  +++ G    LD  R   + + K  V+   VN  V+G 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 204 HAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGK-----GSATL 253
           H G  + P+   ++    P  +L   E+I+ +   T + G ++ E +         +  +
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLV 230

Query: 254 SMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
                 AI  D          L+G  G  D+                     +GK+G+E 
Sbjct: 231 LT--VEAIKRDSKRIYPYSLYLQGEYGYNDI--------------VAEVPAVIGKSGIER 274

Query: 306 VLGLGPLSDFEQEGLEKLKPELKASIEK 333
           ++ L PL++ E+   ++    +K  +E 
Sbjct: 275 IIEL-PLTEDEKRKFDEAVQAVKKLVET 301

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  157 bits (400), Expect = 9e-46
 Identities = 78/338 (23%), Positives = 142/338 (42%), Gaps = 59/338 (17%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M L  +   + + DI    T G A D+ +         +  
Sbjct: 10  QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN------ALPFTS 62

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 63  PKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + +NPV+    I      K   + + ++ G  T+LD  R +   A   NV+   V+  ++
Sbjct: 123 VAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIM 178

Query: 202 GGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA---- 246
           G H G T  P++S A                + ++ +  + +  +D   E+++ K     
Sbjct: 179 GEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFY 237

Query: 247 GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
           G  +A   +  + AI  D          + G  G+ D+              +  +   +
Sbjct: 238 GIATALARI--SKAILNDENAVLPLSVYMDGQYGLNDI--------------YIGTPAVI 281

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
            +NG++ +L + PL+D E+E ++K   +LK  +     
Sbjct: 282 NRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 318

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  157 bits (400), Expect = 1e-45
 Identities = 69/340 (20%), Positives = 121/340 (35%), Gaps = 62/340 (18%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KVA++GA G +G   A  +    +   L + D+      G   D+ H         ++ 
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS 64

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y       +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I
Sbjct: 65  YGTY-------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI 117

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I      K     ++++ G  TTLD  R +   +         V   
Sbjct: 118 FLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173

Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA-- 246
           ++G H G T LP++S A                   E++  +    ++    ++E K   
Sbjct: 174 IIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGAT 232

Query: 247 --GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
             G   +   +    AI  +          L G  G  DV              +     
Sbjct: 233 YYGVAMSLARI--TKAILHNENSILTVSTYLDGQYGADDV--------------YIGVPA 276

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
            + + G+  +  L  L++ E+E        LK  ++    
Sbjct: 277 VVNRGGIAGITEL-NLNEKEKEQFLHSAGVLKNILKPHFA 315

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  156 bits (398), Expect = 1e-45
 Identities = 74/338 (21%), Positives = 124/338 (36%), Gaps = 62/338 (18%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            +V V+GA G +G      +    +   + L D       G A D  H            
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +
Sbjct: 66  HGDY-------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I      K      +++ G  T LD  R +       +V    V+  
Sbjct: 119 FLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAY 174

Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA-- 246
           ++G H G T LP++SQA             K   A +D++ +    +D   +++E K   
Sbjct: 175 IIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGAT 233

Query: 247 --GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
             G       +    AI  +        A L GL G  DV              +     
Sbjct: 234 YYGIAMGLARV--TRAILHNENAILTVSAYLDGLYGERDV--------------YIGVPA 277

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG 334
            + +NG+ EV+ +  L+D E+         LK+ + + 
Sbjct: 278 VINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARA 314

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  155 bits (394), Expect = 5e-45
 Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 66/347 (19%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           +  +V   K+AV+GA G +G  LA       +   + L DIA         D+ H     
Sbjct: 1   AETTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY 59

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
            T S              +   D+D+V+I AG  +KPG +R +L      I+K +   + 
Sbjct: 60  PTVSIDGSDDP-------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K  PNAI  +I+NPV+    IA  V +K     E ++FG  T LD  R +   A +  VN
Sbjct: 113 KVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVN 168

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-------------PKANLADEDIKALTKRTQDGGT 239
           V  V+  + G H G + +PL+  AT                 L  +  + + +  ++   
Sbjct: 169 VKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAY 227

Query: 240 EVVEAKAGKGSAT----LSMAY-AGAIFAD--------ACLKGLNGVPDVVECSFVQSTV 286
           +++    GKG+      +S      A+  D        + LK  +G+ D+          
Sbjct: 228 KIIN---GKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDI---------- 274

Query: 287 TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
                 +    L + GV   +   P+SD E   L++    LK +  +
Sbjct: 275 ----CMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 316

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  154 bits (393), Expect = 7e-45
 Identities = 104/324 (32%), Positives = 156/324 (48%), Gaps = 34/324 (10%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K+ ++GA G IG  LA L  +  L   + L+DIA     G A D+           +V 
Sbjct: 6   KKITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR 63

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND   + LE+SDVVI+ AGVPRKPGM+RDDL  IN  +++ +   I   CPNA V 
Sbjct: 64  G--TNDY--KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVI 119

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++    I   + +K     + K+ G+   LD  R +TF A + NV+V +V   V+
Sbjct: 120 CITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G T++PL   +            +  L  E + A+  RT+ GG E+V      GSA
Sbjct: 176 GGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSA 233

Query: 252 TLSMAYAGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEV-LGL 309
             + A AG   A++ LK    + P   +       + E  F      +  NGV  + +  
Sbjct: 234 YYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPIEV-- 291

Query: 310 GPLSDFEQEGLEKLKPELKASIEK 333
             +SD E+E L+     +K   + 
Sbjct: 292 -EISDKEREQLQVSINAIKDLNKA 314

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  155 bits (394), Expect = 7e-45
 Identities = 77/337 (22%), Positives = 141/337 (41%), Gaps = 55/337 (16%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
           +KVA++G+ G IG  +  L  L  L   + LYD+      G A D+ H  +         
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
           + +++NP++       +V  +A       + G+   LD  R + + A   +V+  +V   
Sbjct: 128 IIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 183

Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           V+G H G  ++PL    T              + ++ ++ + + T+  G E+V    G+G
Sbjct: 184 VIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQG 241

Query: 250 SATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
           SA  + A +      +   D            G  G+ D+              F     
Sbjct: 242 SAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDM--------------FIGLPA 287

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
            +G  G+E V+ L  L++ E++  +K   ++ A  + 
Sbjct: 288 VIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKA 323

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  154 bits (391), Expect = 2e-44
 Identities = 86/341 (25%), Positives = 142/341 (41%), Gaps = 62/341 (18%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
                KVA++GA G +G   A  M L    + L L D+      G A D+ H        
Sbjct: 4   VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH------GL 56

Query: 83  GYMGNDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
            +MG   L       ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  +
Sbjct: 57  PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH 116

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
            ++ ++SNPV+    I   + +K       K+ G  T LD +R +   + K  V+V  V+
Sbjct: 117 GVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172

Query: 198 VPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAK 245
             ++G H G + LPL+S               PK N  +ED K + +  +  G  +++  
Sbjct: 173 GYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK-- 229

Query: 246 AGKGSAT----LSMAY-AGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFF 292
             KG+      +S+      +  +          + G+ G+ DV                
Sbjct: 230 -NKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDV--------------AI 274

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           +    +   GV+EVL    L+  E+E L     ++K  + +
Sbjct: 275 SLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 314

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  154 bits (391), Expect = 2e-44
 Identities = 86/334 (25%), Positives = 143/334 (42%), Gaps = 59/334 (17%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H         +   
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH------GTPFTRR 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NPV+    +    F K    + +K+FG  T LD  R +T  A     +   V+V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 203 GHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA----G 247
            H G + +P++S A                   + ++   ++T+    E++E K      
Sbjct: 171 EH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATHYA 229

Query: 248 KGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
              A   +    +IF D          L+   GV D+                +  V LG
Sbjct: 230 IALAVADI--VESIFFDEKRVLTLSVYLEDYLGVKDL--------------CISVPVTLG 273

Query: 300 KNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           K+GVE +L L  L++ E E   K    LK +I +
Sbjct: 274 KHGVERILEL-NLNEEELEAFRKSASILKNAINE 306

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  153 bits (389), Expect = 3e-44
 Identities = 70/339 (20%), Positives = 123/339 (36%), Gaps = 61/339 (17%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           KV ++G+ G +G   A  + L  +   + L D+        A D+ H         +   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH------ATPFAHP 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
            +NPV+    +  +V          ++ G  T LD  R +   A    V    V+  V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 203 GHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKA---- 246
            H G + + ++S A                 L+ ED   + +  +     ++E K     
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYY 229

Query: 247 GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
           G G+    +    AI  D        A    + GV +V                +    L
Sbjct: 230 GIGAGLARL--VRAILTDEKGVYTVSAFTPEVAGVLEV--------------SLSLPRIL 273

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
           G  GV   +    LS  E+  L +    LK +    + F
Sbjct: 274 GAGGVAGTVYP-SLSPEERAALRRSAEILKEAA-FALGF 310

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  153 bits (389), Expect = 4e-44
 Identities = 82/347 (23%), Positives = 140/347 (40%), Gaps = 63/347 (18%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73

Query: 78  RSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
              V+   Y           +S +VII AG  ++ G +R +L   N  I K +   + KY
Sbjct: 74  PKIVSSKDY-------SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
            P   + ++SNPV+    I   V  K   + + ++ G    LD  R +     +  V+  
Sbjct: 127 SPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 182

Query: 195 EVNVPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVV 242
             +  V+G H G + +P++S                  +   E  K + K+  D   EV+
Sbjct: 183 SCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVI 241

Query: 243 EAKA----GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELP 290
           + K       G +   +  A +I  +          +KGL G+ + V  S        +P
Sbjct: 242 KLKGYTSWAIGLSVADL--AESIMKNLRRVHPISTMIKGLYGIKEDVFLS--------VP 291

Query: 291 FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
                  LG+NG+ +V+ +  L+  E+  L+K    L     K ++F
Sbjct: 292 -----CILGQNGISDVVKV-TLTPDEEARLKKSADTLWGIQ-KELQF 331

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  153 bits (388), Expect = 5e-44
 Identities = 88/339 (25%), Positives = 145/339 (42%), Gaps = 62/339 (18%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H      +  +V+
Sbjct: 5   AKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCP 137
           G   N      L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CP
Sbjct: 63  G--SNTY--DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV 196
           NA + +++NPV+    +  ++  +     + K+ G+   LD  R K + + K NV   +V
Sbjct: 119 NAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174

Query: 197 NVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA 246
           N  +VG H G  ++ L    T              ++D +++A+  RT +   E+V   A
Sbjct: 175 NAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHA 233

Query: 247 ----GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
                  +A + M  A +   D          L+G  G  D+              F  +
Sbjct: 234 SPYVAPAAAIIEM--AESYLKDLKKVLICSTLLEGQYGHSDI--------------FGGT 277

Query: 295 KVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
            V LG NGVE+V+ L  L+  E+   ++   E K     
Sbjct: 278 PVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL 315

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  150 bits (380), Expect = 7e-43
 Identities = 85/344 (24%), Positives = 132/344 (38%), Gaps = 49/344 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVA-------ADVGHI 75
           +V V GAAG I   L        +  K  P++  L L DI    GV         D    
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMELQDCALP 62

Query: 76  NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
             +  +A     D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY
Sbjct: 63  LLKDVIAT----DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118

Query: 136 CPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
              ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK   A K  V   
Sbjct: 119 AKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSD 175

Query: 195 EVNVPVVGGHAGITILPLFSQAT----PKANLADEDI-------KALTKRTQDGGTEVVE 243
           +V   ++ G+   T  P  + A      K     E +              Q  G  V++
Sbjct: 176 DVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 235

Query: 244 AKAGKGSATLSMAYAGAIFADACLKGLNGVP--DVVECSFVQST-----VTELPFFASKV 296
           A+    SA      A     D       G P  + V    + S      V +   ++  V
Sbjct: 236 AR-KLSSA----MSAAKAICDHVRDIWFGTPEGEFVSMG-IISDGNSYGVPDDLLYSFPV 289

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA 340
            +     + V GL P++DF +E ++    EL    E   +F ++
Sbjct: 290 TIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLSS 332

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  147 bits (373), Expect = 3e-42
 Identities = 87/327 (26%), Positives = 140/327 (42%), Gaps = 53/327 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G D     L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +
Sbjct: 61  --GADY--SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NP++    +   +  K       ++FG+   LD  R K         N+      ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170

Query: 203 GHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYA 258
            H G ++    S A       + D +A+    +    EV++ K     G   A   M   
Sbjct: 171 EH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM--V 224

Query: 259 GAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
            A+  D          L+G  G+ +V                    +LGKNG  EV  + 
Sbjct: 225 KAVVEDTGEIIPTSMILQGEYGIENV--------------AVGVPAKLGKNGA-EVADI- 268

Query: 311 PLSDFEQEGLEKLKPELKASIEKGVKF 337
            LSD E E L      L+  +E+ + +
Sbjct: 269 KLSDEEIEKLRNSAKILRERLEE-LGY 294

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  144 bits (366), Expect = 6e-41
 Identities = 82/337 (24%), Positives = 116/337 (34%), Gaps = 61/337 (18%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTP------GVA---ADVG 73
           +VAV GAAG I   L        +L K  P++  L L +I N        GV     D  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                   A          A +D+DV ++    PR PGM R DL   NA I      AI 
Sbjct: 65  FPLLAGMTAH----ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                N  V ++ NP N+   IA    K A +   K    +  LD  RA +  A K    
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLADED---IKALTKRTQDGGTEVVEAK 245
           V+ +    V G+   T+   +  A        ++ ++D              G  +++A+
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR 237

Query: 246 AGKGSATLSMAYAGAIFADACLK-------------GLNGVPDVVECSFVQSTVTELPFF 292
            G  SA  +   A     D  L              G  G+P+ V   F        P  
Sbjct: 238 -GVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGF--------P-- 286

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
              V       + V GL  +  F QE +     EL  
Sbjct: 287 ---VTTENGEYKIVQGL-SIDAFSQERINVTLNELLE 319

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  141 bits (357), Expect = 1e-39
 Identities = 84/340 (24%), Positives = 125/340 (36%), Gaps = 63/340 (18%)

Query: 30  KVAVLGAAGGIGQPLAL------LMKLNPLVSRLALYDIANTPGVAA---------DVGH 74
           +VAV GAAG IG  L        ++  +  V  L L +I     + A         D   
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEI--PQAMKALEGVVMELEDCAF 62

Query: 75  INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                  A     D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+
Sbjct: 63  PLLAGLEAT----DDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118

Query: 135 YCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
                + V ++ NP N+   IA    K A   N +    +T LD  RAK   A K    V
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGV 175

Query: 194 AEVNVPVVGGHAGITILPLFSQAT----PKANLADED--IKALTKRTQDGGTEVVEAKAG 247
             +    V G+   T+ P    A     P   L D +   K         G  +++A+ G
Sbjct: 176 DRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G 234

Query: 248 KGSATLSMAYA--------------GAIF-ADACLKGLNGVPDVVECSFVQSTVTELPFF 292
             SA  S A A              G         +G  G+P+ +  SF    VT     
Sbjct: 235 ASSA-ASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFP---VT----- 285

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE 332
                  K+G   V+    +++F ++ +E    EL   +E
Sbjct: 286 ------AKDGAYRVVEGLEINEFARKRMEITAQELLDEME 319

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  140 bits (355), Expect = 2e-39
 Identities = 63/329 (19%), Positives = 108/329 (32%), Gaps = 53/329 (16%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSE 80
           + E+    K+ V+G  G +G    L +    +  RL L D++  T G   D+   N  + 
Sbjct: 8   NHENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV 66

Query: 81  VAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
                         A   S VVI           +  D+   N  + + L  A+  Y  +
Sbjct: 67  EISKDL-------SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQH 118

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
           +++ + S P    V I   V  K  T+   ++ G+   LD  R +           +   
Sbjct: 119 SVLLVASQP----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKE 174

Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA----GKGSATL 253
           V V+G   G   +  +S                  +  +   E++  K       G +  
Sbjct: 175 VWVIGEQ-GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVA 227

Query: 254 SMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            M    +I  +        A  KG   +   V  S        LP       LG NGV E
Sbjct: 228 DM--VDSIVNNKKKVHSVSALAKGYYDINSEVFLS--------LP-----CILGTNGVSE 272

Query: 306 VLGLGPLSDFE-QEGLEKLKPELKASIEK 333
           V+    L +    E L+     + +  ++
Sbjct: 273 VIKT-TLKEDTVTEKLQSSASSIHSLQQQ 300

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  139 bits (354), Expect = 2e-39
 Identities = 80/331 (24%), Positives = 129/331 (38%), Gaps = 58/331 (17%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----INTRSEVA 82
           KV V+G  G +G   A  + L    S L L D         A D+ H       TR    
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G+         L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + SNPV+    +  ++  +        + G  T LD  R +   A  A V+    +  V+
Sbjct: 114 VTSNPVD----LLTDLATQLAPGQ--PVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 202 GGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           G H G + +  +S A                   ++    + + T++    ++E   GK 
Sbjct: 168 GEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKR 223

Query: 250 SATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE-------LPFFASKVRLGKNG 302
           +    +  A A   +A L+    V  V       S  T        LP       +G+ G
Sbjct: 224 ATYYGIGAALARITEAVLRDRRAVLTV-------SAPTPEYGVSLSLP-----RVVGRQG 271

Query: 303 VEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           V   L    L+  EQ+ LE+    L+   ++
Sbjct: 272 VLSTLHP-KLTGDEQQKLEQSAGVLRGFKQQ 301

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  136 bits (345), Expect = 1e-37
 Identities = 69/345 (20%), Positives = 119/345 (34%), Gaps = 58/345 (16%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           S E     K+ V+G    +G   A+ + +  L   +AL D+      G   D+ H    +
Sbjct: 15  SQEPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL 73

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
           +T   V+G  Y            S +V+I AG  ++ G +R +L   N  I K +   I 
Sbjct: 74  HTAKIVSGKDY-------SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ P+ +  +             +   K       ++ G    LD  R +     +  V+
Sbjct: 127 KHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAG 247
              V   V+G H G ++  ++S        K  + +  ++  L   T      VV     
Sbjct: 183 SCLVIGWVIGQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241

Query: 248 KGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
             +       +       I  D          +K   G+ D V  S        LP    
Sbjct: 242 VLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLS--------LP---- 289

Query: 295 KVRLGKNGVEE--VLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
              L  NG+    ++ +  L   E++ L+K    L     K +KF
Sbjct: 290 -CVLN-NGISHCNIVKM-KLKPDEEQQLQKSATTLWDIQ-KDLKF 330

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  135 bits (343), Expect = 1e-37
 Identities = 64/335 (19%), Positives = 122/335 (36%), Gaps = 56/335 (16%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH------INTRSE 80
           RK+ ++G  G +G  +A  +    +       D           D          +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           +  +        AL D+DVVI   G  +     P   R       + +V+ + + + +  
Sbjct: 61  INDW-------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
            + ++ +ISNPV+    +   +F+    +   K+ G  T LD  R +       +++   
Sbjct: 114 FHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRS 169

Query: 196 VNVPVVGGHAGITILPLFSQAT----PKANLAD---EDIKALTKRTQDGGTEVVEAKAGK 248
           V+   +G H G +    +S       P   LAD    D+ A+ +  + GG  V+    GK
Sbjct: 170 VSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---GK 225

Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE-------LPFFASKVRLGKN 301
           G  +  +A +    A A +   +    V       S   +        P       +G++
Sbjct: 226 GYTSYGVATSAIRIAKAVMADAHAELVV-------SNRRDDMGMYLSYP-----AIIGRD 273

Query: 302 GVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
           GV     L  L+  EQE L + +  ++   ++ V 
Sbjct: 274 GVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVD 307

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  136 bits (343), Expect = 3e-37
 Identities = 81/337 (24%), Positives = 116/337 (34%), Gaps = 60/337 (17%)

Query: 30  KVAVLGAAGGIGQPLALL------MKLNPLVSRLALYDIANTP----GVA---ADVGHIN 76
            +AV GAAG I   L            +  ++ L L     +     GVA    D  +  
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            R    G        +  ED D  ++    PR PGM R  L +IN  I  D   A+    
Sbjct: 93  LREVSIG----IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148

Query: 137 P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAE 195
             N  V ++ NP N+   I     K A     K    +T LD  RAK   A KA V   +
Sbjct: 149 SKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205

Query: 196 VNVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAKAGK 248
           V+   + G+   T +P F  A        E IK         T   Q  G  +++   G+
Sbjct: 206 VSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GR 264

Query: 249 GSATLSMAYAGAIFADACLKGLN----------------GVPDVVECSFVQSTVTELPFF 292
            SA  S A + A    + +                    G+ + +  S         P  
Sbjct: 265 SSA-ASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSM--------P-- 313

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
               R   +G  E+       DF  E ++K + EL A
Sbjct: 314 ---CRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 347

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 55.9 bits (134), Expect = 7e-09
 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 30/207 (14%)

Query: 25  SVPDRKVAVLGAAGGIGQPLAL---LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           S+   K+A +G  G  G   +L   L     +   +ALYD+      A     I   S  
Sbjct: 2   SLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLD--FEAAQKNEVIGNHSGN 58

Query: 82  AG--YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNINAG---- 123
               Y     L +AL  +D+VII                P + G+ +     +  G    
Sbjct: 59  GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIR 118

Query: 124 ------IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177
                 I  ++  AI  Y P + V   +NP++    +  +VF              T   
Sbjct: 119 GLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKL 178

Query: 178 VVRAKTFYAGKANVNVAEVNVPVVGGH 204
           +    T   G       ++ V V+G +
Sbjct: 179 LAEMVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 28/146 (19%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI-ANTPGVAADVGH--INTRSEVA 82
            + + G  G    P   L LL  L    + +L LYD         A      I  ++   
Sbjct: 30  SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 88

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +       +A  D D V+    V +      D+   +  G+                  
Sbjct: 89  EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSI 148

Query: 125 --VKDLCSAIAKYCPNAIVNMISNPV 148
             V ++   + KY P+A +   SNP 
Sbjct: 149 GGVLEILDYMEKYSPDAWMLNYSNPA 174

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)

Query: 30  KVAVLGAAGGI--GQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTR-SEVAG-- 83
           K+A +G            L+ + + L V  L L DI         VG +  R  E AG  
Sbjct: 9   KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 68

Query: 84  --YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNI--------N 121
                     +AL+ +D V     V            P K G+   +             
Sbjct: 69  IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 128

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPV 148
             ++ D+   + + CP+A +   +NP 
Sbjct: 129 IPVILDIIRDMEELCPDAWLINFTNPA 155

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 32/206 (15%), Positives = 52/206 (25%), Gaps = 43/206 (20%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIA--NTPGVAADVGHINTRSEVAG 83
           K+ ++GA G        ++ L K   L  S + L DI       +               
Sbjct: 5   KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL 63

Query: 84  -YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +     L   + D+D VI  A V     + +        G                   
Sbjct: 64  KFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTF 123

Query: 125 --------VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
                     D+   I K  P A     +NP+         +  +       K  G    
Sbjct: 124 SNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTVPI---KAVGFC-- 174

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVG 202
                      K  +   +V+  V G
Sbjct: 175 HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 53/377 (14%), Positives = 101/377 (26%), Gaps = 132/377 (35%)

Query: 50  LNPLVSRLALYDIANTP-GV--AADVGHI-NTRSEVAG-YM--------GNDQLGQALED 96
            +  V      D+ + P  +    ++ HI  ++  V+G             + + + +E+
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 97  SD-------------VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                              P+ + R     RD L+N N    K   S +  Y    +   
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQA 143

Query: 144 ISN--PVNSTVPIAAEVFKKAGTYNEKKLFGVTTL--DVVRAKTFYAGKAN----VNVAE 195
           +    P  + +     +    G        G T +  DV  +             +N+  
Sbjct: 144 LLELRPAKNVL-----IDGVLG-------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 196 VNVPVVGGHAGITIL-PLFSQATPK-ANLAD---------EDIKALTKRT---------- 234
            N P       + +L  L  Q  P   + +D           I+A  +R           
Sbjct: 192 CNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 235 ------QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGL-----NGVPDVVECS--- 280
                 Q+   +   A                 F  +C K L       V D +  +   
Sbjct: 248 LVLLNVQN--AKAWNA-----------------FNLSC-KILLTTRFKQVTDFLSAATTT 287

Query: 281 -----FVQSTVTE---LPFFASKVRLGKNGV-EEVLGLGPL---------SD-------F 315
                    T+T           +      +  EVL   P           D       +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 316 EQEGLEKLKPELKASIE 332
           +    +KL   +++S+ 
Sbjct: 348 KHVNCDKLTTIIESSLN 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	100.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.98
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.98
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.87
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.8
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.69
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.56
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.49
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.48
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.47
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.46
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.35
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.33
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.32
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.31
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.3
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.3
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.29
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.29
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.28
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.27
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.27
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.27
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.27
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.25
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.24
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.24
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.24
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.23
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.22
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.19
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.19
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.19
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.18
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.18
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.18
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.16
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.16
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.14
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.14
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.12
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.09
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.09
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.07
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.06
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.06
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.05
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.05
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.04
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.03
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.99
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.99
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.99
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.99
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	97.99
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.98
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.97
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.96
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.96
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.95
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.95
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.94
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.94
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	97.93
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	97.91
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.91
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.91
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.91
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.9
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.88
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.87
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.86
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	97.85
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.85
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.85
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	97.84
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.84
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.83
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	97.82
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.82
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.82
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.82
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.81
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.81
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.81
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.81
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	97.8
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	97.79
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	97.79
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.78
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.78
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.78
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	97.77
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	97.77
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.77
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	97.77
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.76
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.74
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.73
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.71
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.71
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.71
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.71
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.71
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	97.7
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.7
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.69
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.67
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.67
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.67
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.67
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.67
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	97.67
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.66
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.66
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.65
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.65
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.64
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.62
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.62
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.62
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.62
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.62
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.61
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.61
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.61
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.59
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.59
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.59
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.59
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.58
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.58
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.56
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.55
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.54
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.54
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.54
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.54
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.53
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.53
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.52
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.52
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.51
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.51
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.5
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.49
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.49
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.49
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.47
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.47
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.47
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.47
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.46
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.45
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.45
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	97.45
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.44
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.44
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.44
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.43
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.43
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.42
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.42
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.42
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.41
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.41
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.41
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.41
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.41
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.4
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.4
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.4
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.39
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.39
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.38
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.38
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.38
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.38
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.37
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.37
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.37
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.37
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.36
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.36
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.36
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.34
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.34
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.34
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.34
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.32
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.32
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.32
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.32
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.32
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.32
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.32
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.31
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.31
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.31
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.31
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.31
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.29
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.29
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.29
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.29
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.28
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.27
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.27
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.27
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.27
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.26
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.26
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.26
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.25
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.25
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.23
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.23
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.23
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.23
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.23
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.22
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.22
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.22
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.21
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.21
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.2
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.19
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.18
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.18
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.17
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.17
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.17
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.17
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.17
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.17
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.17
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.16
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.16
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.16
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.16
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.16
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.16
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.16
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.15
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.15
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.15
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.15
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.14
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.14
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.13
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.13
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.13
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.12
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.12
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.12
1spx_A	278	Short-chain reductase family member (5L265); paral	97.11
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.11
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.11
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.11
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.11
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.11
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.1
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.1
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.09
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.08
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.07
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.07
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.06
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.06
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.05
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.05
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.05
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.04
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.04
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.04
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.03
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.03
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.03
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.02
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.02
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.01
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.01
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.0
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.0
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.0
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.99
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.99
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.99
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.99
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.98
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.98
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.98
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.98
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.97
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.97
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.96
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.96
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.96
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.96
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.96
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.96
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.94
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.94
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.93
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.93
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.93
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.92
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.91
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.91
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.91
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.9
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.9
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.89
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.89
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.89
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.88
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.88
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.87
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.87
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.87
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.86
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.85
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.84
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.84
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.84
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.84
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.84
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.84
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.82
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.82
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.82
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.81
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.81
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.81
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.8
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.8
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.79
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.78
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.77
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.77
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.76
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.73
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.72
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.72
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.72
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.71
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.7
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.7
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.69
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.68
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.68
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.68
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.67
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.67
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.66
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.65
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.64
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.63
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.62
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.59
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.59
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.54
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.54
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.52
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.45
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.44
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.42
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.41
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.41
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.41
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.4
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.39
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.38
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.38
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.37
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.35
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.34
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.28
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.27
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.25
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.23
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.22
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.17
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.17
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.17
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.15
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.14
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.11
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.1
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.08
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.06
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.05
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.05
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.05
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.01
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.98
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.94
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.93
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.93
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.93
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.92
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.89
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.88
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.87
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.84
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.84
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.82
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.8
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.78
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.78
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.75
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.73
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.73
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.7
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.68
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.65
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	95.65
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.62
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.6
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.6
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	95.6
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	95.58
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.58
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	95.57
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	95.53
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.53
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.51
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.5
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.49
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.47
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.43
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.42
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.4
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	95.38
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	95.38
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	95.38
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	95.36
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.35
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.35
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.35
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	95.35
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	95.34
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.34
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.32
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	95.28
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.28
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.26
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	95.25
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.25
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.23
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.18
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.16
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.16
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.16
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.15
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.11
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.1
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.09

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=8.4e-67  Score=491.64  Aligned_cols=309  Identities=55%  Similarity=0.844  Sum_probs=277.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |||+||||+|+||+++++.|.++ ++.+||+|+|+++ ..|.++||+|.....++..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            69999997799999999999887 7788999999997 7899999999865556665432 2446899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHHHHHHH
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~~la  186 (340)
                      ||++||+|.|++.+|+++++++++.|.++||+++++++|||+|++|++++++++++|.+|++||+|+|.||++|+++++|
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~~LD~~R~~~~la  159 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVA  159 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999977779999933999999999999999999999


Q ss_pred             HHcCCCCCCCceeEEEec-CCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHHH
Q 019519          187 GKANVNVAEVNVPVVGGH-AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA  265 (340)
Q Consensus       187 ~~l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~a  265 (340)
                      +++|+++++|+++||||| |+ ++||+||++ -+.++++++++++.++|++++++|++.|.|+|+++||+|.++++++++
T Consensus       160 ~~lgv~~~~v~~~V~G~Hsg~-t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~a  237 (312)
T 3hhp_A          160 ELKGKQPGEVEVPVIGGHSGV-TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS  237 (312)
T ss_dssp             HHHTCCGGGCCCCEEECSSGG-GEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHhCcChhHcceeEEeccCCC-ceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHH
Confidence            999999999999999999 65 899999998 344688889999999999999999997656799999999999999999


Q ss_pred             HHcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 019519          266 CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA  340 (340)
Q Consensus       266 i~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  340 (340)
                      |+...++++.++||++++|+.+.++|||+||++|++|+++++++++|+++|+++|++|+++|+++++++++|+++
T Consensus       238 i~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~~  312 (312)
T 3hhp_A          238 LVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_dssp             HHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            953333344678888877654568999999999999999999977999999999999999999999999999874

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=1.1e-63  Score=472.23  Aligned_cols=310  Identities=60%  Similarity=0.957  Sum_probs=282.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||+||||+|+||+++++.|+..+++.||+|+|+++.++.++||.|...+.+++.+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999997799999999999988888899999999888899999998765567765334578778999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHHHHHHHHH
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~  188 (340)
                      ++|++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++++++++.+.+|++||||+|+||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877554545444999999999999999999999999


Q ss_pred             cCCCCCCCceeEEEec-CCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHHHHHH
Q 019519          189 ANVNVAEVNVPVVGGH-AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL  267 (340)
Q Consensus       189 l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li~ai~  267 (340)
                      +|++|++|++++|||| |+ +++|+||++++...+++++++++.+++++++++|++.+.++|+++|++|.++++++++|+
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~  239 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV  239 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 67 899999999865458888899999999999999999877889999999999999999999


Q ss_pred             cCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019519          268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN  339 (340)
Q Consensus       268 ~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  339 (340)
                      +|+++++.++++++++|+|++|+|||+||++|++|+++++++++|+++|+++|++|++.|+++++++++|++
T Consensus       240 ~~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~~~~~~~~~~~  311 (314)
T 1mld_A          240 DAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK  311 (314)
T ss_dssp             HHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            987644457888888999988999999999999999999888799999999999999999999999999876

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=3.5e-64  Score=476.89  Aligned_cols=294  Identities=26%  Similarity=0.430  Sum_probs=264.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC-C--CceEEEEecCCccccccCCCCEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-T--RSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~-~--~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      ++++||+|||| |.||+++++.++..++++||+|+|+++  +++.++||+|.. +  ...+..   ++|+ ++++|||+|
T Consensus        17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~---~~d~-~~~~~aDiV   91 (331)
T 4aj2_A           17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVS---SKDY-SVTANSKLV   91 (331)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEE---CSSG-GGGTTEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEE---cCCH-HHhCCCCEE
Confidence            34679999998 999999999999999989999999987  689999999985 2  223432   3565 689999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHH
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~  179 (340)
                      |+++|.||++||+|.|++.+|+++++++++.|+++||++|++++|||+|++|+++   ++.+| +|++||||+ |.||++
T Consensus        92 vi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~---~k~sg-~p~~rviG~gt~LD~~  167 (331)
T 4aj2_A           92 IITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA---WKISG-FPKNRVIGSGCNLDSA  167 (331)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHH
T ss_pred             EEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHHhC-CCHHHEEeeccccHHH
Confidence            9999999999999999999999999999999999999999999999999999987   78888 999999999 999999


Q ss_pred             HHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC------------CCChHHHHHHHHHHhcchhhhhhhhcC
Q 019519          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAG  247 (340)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~  247 (340)
                      |+++++|+++|+++++|+++||||||+ ++||+||++++++            .+++++|+++.+++++++++|++.   
T Consensus       168 R~~~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---  243 (331)
T 4aj2_A          168 RFRYLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---  243 (331)
T ss_dssp             HHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhc---
Confidence            999999999999999999999999998 8999999998753            134567899999999999999995   


Q ss_pred             CCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHH
Q 019519          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLK  324 (340)
Q Consensus       248 kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~  324 (340)
                      ||+++||+|.++++++++|++|.+   .++|++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|++|+
T Consensus       244 kg~t~~a~a~a~a~~~~ail~d~~---~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~  319 (331)
T 4aj2_A          244 KGYTSWAIGLSVADLAESIMKNLR---RVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSA  319 (331)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHhCCC---CeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccC-CCCHHHHHHHHHHH
Confidence            589999999999999999999864   578886 678888  57999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 019519          325 PELKASIEKGVKF  337 (340)
Q Consensus       325 ~~l~~~~~~~~~~  337 (340)
                      +.|++ +++.++|
T Consensus       320 ~~l~~-~~~~~~~  331 (331)
T 4aj2_A          320 DTLWG-IQKELQF  331 (331)
T ss_dssp             HHHHH-HHTTCCC
T ss_pred             HHHHH-HHhhcCC
Confidence            99997 5555543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=8e-64  Score=466.87  Aligned_cols=282  Identities=29%  Similarity=0.428  Sum_probs=255.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  ++|+++||+|+.    ..+++...   +| +++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~---~d-~~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG---AD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE---SC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC---CC-HHHhCCCCEEEE
Confidence            79999997 999999999999999999999999998  789999999964    23455542   45 478999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      +||.||+|||+|.|++..|++|++++++.|.++||+++++++|||+|+||+++   ++.+| +|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~---~k~sg-~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSS-CCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh---HHHcC-CChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999999997   78999 999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHH
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI  261 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~  261 (340)
                      ++++++.++.++.  +++|||+||+ +++|+||++++.+..   +++++.++++.++++|++.   ||+++||+|.++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g~~---~~~~i~~~~~~~g~eIi~~---kGst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEESCC---CHHHHHHHHHTHHHHHHHH---HSSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCCch---hHHHHHHHHhhhheEEEec---CcccchhHHHHHHH
Confidence            9999999987653  7899999999 999999999985533   4667888999999999984   68999999999999


Q ss_pred             HHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019519          262 FADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK  333 (340)
Q Consensus       262 li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  333 (340)
                      ++++|+++.+   .++|++ +++|+| .+++|||+||++|++|++ ++++ +|+++|+++|++|++.||+.+++
T Consensus       223 ~~~ail~d~~---~v~~~s~~l~g~yG~~~v~~s~P~~lg~~Gve-i~~l-~L~~~E~~~l~~s~~~lk~~i~~  291 (294)
T 2x0j_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCC---cEEEEEEEEecCCCCccEEEEEEEEEeCCEEE-EeCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999864   588886 579998 679999999999999985 7787 99999999999999999998864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=1.5e-62  Score=464.88  Aligned_cols=298  Identities=35%  Similarity=0.530  Sum_probs=270.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDV   99 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDi   99 (340)
                      |+++||+|||+ |.+|+++++.|+..++. +|+|+|+++  +++.++||+|..    ...++..+   +| +++++|||+
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t---~d-~~a~~~aDv   76 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT---ND-YKDLENSDV   76 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE---SC-GGGGTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc---CC-HHHHCCCCE
Confidence            56789999997 99999999999999886 999999997  578899999974    23456543   45 489999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chhH
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDV  178 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld~  178 (340)
                      ||+++|.|+++|++|.|++.+|+++++++++.|.++||+++++++|||+|++|+++   ++.+| +|++||+|+| .||+
T Consensus        77 VIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~---~k~sg-~p~~rviG~~~~LD~  152 (321)
T 3p7m_A           77 VIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML---QKFSG-VPDNKIVGMAGVLDS  152 (321)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEEECHHHHH
T ss_pred             EEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH---HHhcC-CCHHHEEeeccchHH
Confidence            99999999999999999999999999999999999999999999999999999987   78888 9999999996 8999


Q ss_pred             HHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---------CChHHHHHHHHHHhcchhhhhhhhcCC
Q 019519          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGK  248 (340)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~~k  248 (340)
                      +|+++++|+++|+++++|++++||+||+ +++|+||++++++ +         +++++++++.++++++|++|++.+ |+
T Consensus       153 ~R~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~  230 (321)
T 3p7m_A          153 ARFRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KT  230 (321)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CC
Confidence            9999999999999999999999999998 9999999999864 1         366778999999999999999976 78


Q ss_pred             CCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eee-CCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHH
Q 019519          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQ-STV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLK  324 (340)
Q Consensus       249 g~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~-g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~  324 (340)
                      |+++||+|.++++++++|++|++   .++|++ +++ |+|  ++|+|||+||++|++|++++ ++ +|+++|+++|++|+
T Consensus       231 gsa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l-~L~~~E~~~l~~s~  305 (321)
T 3p7m_A          231 GSAYYAPAAAGIQMAESFLKDKK---MILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV-EISDKEREQLQVSI  305 (321)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC-CCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCC---cEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC-CCCHHHHHHHHHHH
Confidence            99999999999999999999853   588997 578 887  66999999999999999999 88 99999999999999


Q ss_pred             HHHHHHHHHHhhhhhC
Q 019519          325 PELKASIEKGVKFANA  340 (340)
Q Consensus       325 ~~l~~~~~~~~~~~~~  340 (340)
                      +.|++.++...+++++
T Consensus       306 ~~l~~~~~~~~~~l~~  321 (321)
T 3p7m_A          306 NAIKDLNKAAAEILAK  321 (321)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999998887764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=5.5e-63  Score=466.07  Aligned_cols=295  Identities=29%  Similarity=0.501  Sum_probs=262.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC----CceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|||| |.||+++++.|++.++++||+|+|+++  +++.++||+|...    ..++..+   ++ +++++|||+||+
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~---~~-~~a~~~aDvVii   75 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT---ND-YGPTEDSDVCII   75 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE---SS-SGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC---CC-HHHhCCCCEEEE
Confidence            79999998 999999999999999889999999988  6889999999742    3345432   33 689999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld~~R~  181 (340)
                      ++|.|+++||+|.|++.+|+++++++++.|.++||+++++++|||+|++|+++   ++.+| +|++||+|+| .||++|+
T Consensus        76 ~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~---~k~~g-~p~~rviG~~t~LD~~R~  151 (314)
T 3nep_X           76 TAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA---YEASG-FPTNRVMGMAGVLDTGRF  151 (314)
T ss_dssp             CCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH---HHHHT-CCGGGEEECCHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH---HHhcC-CChHHEEeecCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999997   77888 9999999996 9999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----CChHHHHHHHHHHhcchhhhhhhhcCCCCccchHH
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A  256 (340)
                      ++++|+++|+++++|+++||||||+ ++||+||++++++ +    +++++++++.++++++|++|++.| |+ +++||+|
T Consensus       152 ~~~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a  228 (314)
T 3nep_X          152 RSFIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPG  228 (314)
T ss_dssp             HHHHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHH
T ss_pred             HHHHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHH
Confidence            9999999999999999999999998 9999999999864 2    467778999999999999999975 44 8999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019519          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG  334 (340)
Q Consensus       257 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  334 (340)
                      .++++++++|+.+.   +.++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|+++|++.+++.
T Consensus       229 ~a~~~~~~ail~~~---~~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~  304 (314)
T 3nep_X          229 AAAAEMTEAILKDN---KRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDDL  304 (314)
T ss_dssp             HHHHHHHHHHHHTC---CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC---CeEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999985   3588886 689998 67999999999999999999998 999999999999999999999988


Q ss_pred             hhhhh
Q 019519          335 VKFAN  339 (340)
Q Consensus       335 ~~~~~  339 (340)
                      .++++
T Consensus       305 ~~~l~  309 (314)
T 3nep_X          305 QRLRD  309 (314)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77664

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=9.6e-64  Score=472.95  Aligned_cols=294  Identities=27%  Similarity=0.423  Sum_probs=246.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      +.++||+|||| |.||+++++.|+..++++||+|+|+++  +++.++||+|... ...+..++  ++ +++++|||+||+
T Consensus         7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~--~~-~~a~~~aDiVvi   82 (326)
T 3vku_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS--AE-YSDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE--Cc-HHHhcCCCEEEE
Confidence            34689999997 999999999999999999999999987  6899999999852 12344432  34 588999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      ++|.|+++||+|.|++.+|+++++++++.|.++||++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|+
T Consensus        83 ~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~---~k~~g-~p~~rviG~gt~LD~~R~  158 (326)
T 3vku_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT---WKLSG-FPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH---HHhcC-CCHHHeeeecccCcHHHH
Confidence            99999999999999999999999999999999999999999999999999987   78888 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-CC----------ChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL----------ADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~~----------~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      ++++|+++|+++++|+++||||||+ ++||+||++++++ ++          ++++++++.+++++++++|++   +||+
T Consensus       159 ~~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~kG~  234 (326)
T 3vku_A          159 RQSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIK---LKGA  234 (326)
T ss_dssp             HHHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH---HHSC
T ss_pred             HHHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---cCCC
Confidence            9999999999999999999999998 9999999999864 21          456789999999999999999   4689


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      ++||+|.++++++++|+.+.   +.++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|+++|+
T Consensus       235 t~~a~a~a~~~~~~ail~~~---~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~sa~~L~  310 (326)
T 3vku_A          235 TFYGIATALARISKAILNDE---NAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK  310 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC---CEEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhcCC---CceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            99999999999999999974   3688885 689998 56999999999999999999998 999999999999999999


Q ss_pred             HHHHHHh
Q 019519          329 ASIEKGV  335 (340)
Q Consensus       329 ~~~~~~~  335 (340)
                      +.+++..
T Consensus       311 ~~~~~~~  317 (326)
T 3vku_A          311 KVLTDAF  317 (326)
T ss_dssp             CC-----
T ss_pred             HHHHHHH
Confidence            8887653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=3.9e-62  Score=462.10  Aligned_cols=295  Identities=32%  Similarity=0.506  Sum_probs=263.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDV   99 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDi   99 (340)
                      |+++||+|||| |.+|+++++.|+..++. ||+|+|+++  +++.++||.|..    ...++..+   +|+ ++++|||+
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t---~d~-~a~~~aDi   78 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA---NDY-AAIEGADV   78 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE---SSG-GGGTTCSE
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe---CCH-HHHCCCCE
Confidence            56789999998 99999999999999885 999999987  578899999874    24456653   465 89999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chhH
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDV  178 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld~  178 (340)
                      ||+++|.|+++|++|.|++.+|+++++++++.|+++||+++++++|||+|++|+++   ++.+| +|++||+|+| .||+
T Consensus        79 VIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~---~k~sg-~p~~rviG~~~~LD~  154 (324)
T 3gvi_A           79 VIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL---QKFSG-LPAHKVVGMAGVLDS  154 (324)
T ss_dssp             EEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHH
T ss_pred             EEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH---HHhcC-CCHHHEEeecCccHH
Confidence            99999999999999999999999999999999999999999999999999999987   78888 9999999997 8999


Q ss_pred             HHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---------CChHHHHHHHHHHhcchhhhhhhhcCC
Q 019519          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGK  248 (340)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~~k  248 (340)
                      +|+++++|+++|+++++|++++||+||+ +++|+||++++++ +         +++++++++.+++++++++|++.+ |+
T Consensus       155 ~R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-gk  232 (324)
T 3gvi_A          155 ARFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KT  232 (324)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-CC
Confidence            9999999999999999999999999998 9999999999864 1         366778999999999999999976 88


Q ss_pred             CCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHH
Q 019519          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE  326 (340)
Q Consensus       249 g~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  326 (340)
                      |+++||+|.++++++++|++|++   .++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.
T Consensus       233 gsa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~  308 (324)
T 3gvi_A          233 GSAFYAPAASAIQMAESYLKDKK---RVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI-DLDKDEKAQFDKSVAS  308 (324)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHH
Confidence            99999999999999999999863   588997 689998 56899999999999999999998 9999999999999999


Q ss_pred             HHHHHHHHhh
Q 019519          327 LKASIEKGVK  336 (340)
Q Consensus       327 l~~~~~~~~~  336 (340)
                      |++.++....
T Consensus       309 l~~~~~~~~~  318 (324)
T 3gvi_A          309 VAGLCEACIG  318 (324)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999987654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=3.1e-62  Score=461.35  Aligned_cols=292  Identities=33%  Similarity=0.519  Sum_probs=266.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC--C--cHHHHHHHhcCC----CCceEEEEecCCccccccCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--N--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~--~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~a   97 (340)
                      |+++||+|+|+ |.+|+++++.++..++ ++|+|+|++  +  .++.++||.|..    ...++..+   +| +++++||
T Consensus         6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t---~d-~~a~~~a   79 (315)
T 3tl2_A            6 IKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT---SD-YADTADS   79 (315)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE---SC-GGGGTTC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc---CC-HHHhCCC
Confidence            34579999998 9999999999999998 899999998  4  578889998864    34466653   45 5889999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cch
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTL  176 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~l  176 (340)
                      |+||+++|.|+++|++|.|++.+|+++++++++.+.++||++|++++|||+|++|+++   ++.+| +|++||||+ |.|
T Consensus        80 DvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~---~k~sg-~p~~rviG~gt~L  155 (315)
T 3tl2_A           80 DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV---FKEAG-FPKERVIGQSGVL  155 (315)
T ss_dssp             SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH---HHhcC-CChHHEEeeccCc
Confidence            9999999999999999999999999999999999999999999999999999999997   78888 999999999 999


Q ss_pred             hHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----CChHHHHHHHHHHhcchhhhhhhhcCCCCc
Q 019519          177 DVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (340)
Q Consensus       177 d~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  251 (340)
                      |++|+++++|+++|+++++|+++||||||+ ++||+||++++++ +    +++++++++.+++++++++|++. ++||++
T Consensus       156 D~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~-~~kgst  233 (315)
T 3tl2_A          156 DTARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGL-LGNGSA  233 (315)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSSCC
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHh-cCCCcc
Confidence            999999999999999999999999999998 9999999999864 2    56778999999999999999986 378999


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       252 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      +||+|.++++++++|+++.   +.++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|++
T Consensus       234 ~~a~a~a~~~~~~ail~~~---~~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~  309 (315)
T 3tl2_A          234 YYAPAASLVEMTEAILKDQ---RRVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRN  309 (315)
T ss_dssp             CHHHHHHHHHHHHHHHTTC---CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCC---CcEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCC-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999974   3588886 689998 67999999999999999999998 9999999999999999998


Q ss_pred             HHHH
Q 019519          330 SIEK  333 (340)
Q Consensus       330 ~~~~  333 (340)
                      .++.
T Consensus       310 ~~~~  313 (315)
T 3tl2_A          310 VMKV  313 (315)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            8753

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=4.3e-62  Score=456.21  Aligned_cols=282  Identities=29%  Similarity=0.418  Sum_probs=258.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|||| |.+|+++++.|+..++++||+|+|+++  +++.++|+.|..    .+.++..+   +| +++++|||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t---~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG---AD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE---SC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe---CC-HHHhCCCCEEEE
Confidence            69999998 999999999999999889999999987  577889998864    23456543   46 689999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      ++|.|+++|++|.|++.+|+++++++++.|.++||+++++++|||+|++|+++   ++.+| +|++||||+ |.||++|+
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~---~k~~g-~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSC-CCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH---HHhcC-CCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999987   78888 999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHH
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI  261 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~  261 (340)
                      ++++| ++|++|++ +++||||||+ ++||+||++++++ .+  +++++.+++++++++|++.   ||+++||+|.++++
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~---kG~t~~~~a~a~~~  222 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHH---HSSCCHHHHHHHHH
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHH
Confidence            99999 99999999 9999999998 9999999999864 22  6889999999999999995   58999999999999


Q ss_pred             HHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019519          262 FADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK  333 (340)
Q Consensus       262 li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~  333 (340)
                      ++++|+.+.+   .++|++ +++|+| .+++|||+||++|++|++ ++++ +|+++|+++|++|+++|++.+++
T Consensus       223 ~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l-~L~~~E~~~l~~s~~~l~~~~~~  291 (294)
T 1oju_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCC---eEEEEEecccccCCCCceEEEEEEEEeCCEEE-EecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999853   588987 689998 559999999999999999 9888 99999999999999999998865

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=1.2e-62  Score=466.04  Aligned_cols=292  Identities=23%  Similarity=0.335  Sum_probs=264.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      +++||+|||+ |.||+++++.|+..+++++|+|+|+++  +++.++||.|...  ...+..++  +| +++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~--~~-~~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY--GT-YEDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEE--EC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEe--Cc-HHHhCCCCEEEE
Confidence            4689999997 999999999999999889999999987  6889999999741  12344442  34 588999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      ++|.|+++|++|.|++..|+++++++++.|.++||++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~---~k~~g-~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT---WKFSG-LPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH---HHhcC-CCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999997   78888 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----------CChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      ++++|+++|+++++|+++||||||+ ++||+||++++++ +          +++++++++.++++++|++|++.   ||+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeC---CCC
Confidence            9999999999999999999999998 9999999999864 1          15667899999999999999994   689


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      ++||+|.++++++++|+.|.   +.++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|+++|+
T Consensus       232 t~~a~a~a~~~~~~ail~~~---~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l~  307 (326)
T 3pqe_A          232 TYYGVAMSLARITKAILHNE---NSILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVLK  307 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC---CEEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCC---CcEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            99999999999999999974   3588875 689998 56999999999999999999998 999999999999999999


Q ss_pred             HHHHHH
Q 019519          329 ASIEKG  334 (340)
Q Consensus       329 ~~~~~~  334 (340)
                      +.+++.
T Consensus       308 ~~~~~~  313 (326)
T 3pqe_A          308 NILKPH  313 (326)
T ss_dssp             HHHTTT
T ss_pred             HHHHHh
Confidence            988754

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.6e-60  Score=452.86  Aligned_cols=309  Identities=66%  Similarity=1.034  Sum_probs=276.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .++|||+||||+|+||++++..|+..+++.||+|+|+++..+.++||.|.....++....+++|++++++|||+||+++|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            35689999996699999999999988877899999998767788999987644466654334578899999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH-HHHhCCCCCCceEeccchhHHHHHHH
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV-FKKAGTYNEKKLFGVTTLDVVRAKTF  184 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~-~~~sg~~~~~kviG~~~ld~~R~~~~  184 (340)
                      .|+++|++|.+++..|+++++++++.+.+++|+++++++|||+|++|++++++ ++.+| +|++||||+|.||+.|++++
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~-~p~~rviG~~~Ld~~r~~~~  164 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT-YDPKRLLGVTMLDVVRANTF  164 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTC-CCTTSEEECCHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccC-CCcccEEEEeehHHHHHHHH
Confidence            99999999999999999999999999999999999999999999977766554 44566 99999999999999999999


Q ss_pred             HHHHcCCCCCCCceeEEEec-CCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHH
Q 019519          185 YAGKANVNVAEVNVPVVGGH-AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA  263 (340)
Q Consensus       185 la~~l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li  263 (340)
                      +|+++|++|++|++++||+| |+ +++|+||++++...+++++++++.+++++++++|++.+.++|+++||+|.++++++
T Consensus       165 la~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~  243 (326)
T 1smk_A          165 VAEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA  243 (326)
T ss_dssp             HHHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH
T ss_pred             HHHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999 76 89999999998767888889999999999999999976677999999999999999


Q ss_pred             HHH---HcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019519          264 DAC---LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN  339 (340)
Q Consensus       264 ~ai---~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  339 (340)
                      ++|   ++|++   .++++++++|++++|+|||+||++|++|+++++..++|+++|+++|++|++.|+++++++.+|..
T Consensus       244 ~ai~~~~~~~~---~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~~~l~~~~~~~~~~~~  319 (326)
T 1smk_A          244 DACLRGLRGDA---GVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR  319 (326)
T ss_dssp             HHHHHHHHTCS---CEEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCC---eEEEEEeeccccCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999   77754   57888888898888999999999999999999883499999999999999999999999998863

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.5e-61  Score=460.96  Aligned_cols=296  Identities=25%  Similarity=0.379  Sum_probs=256.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCC-ceEEEEecCCccccccCCCCEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |+++||+||||+|+||+++++.++..++..||+|+|+++  +++.++||.|..+. .++...   +|++++++|||+||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t---~d~~~al~dADvVvi   82 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFT---SDIKEALTDAKYIVS   82 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEE---SCHHHHHTTEEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEc---CCHHHHhCCCCEEEE
Confidence            346799999977999999999999999888999999987  58999999997642 345542   567789999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE-EEEecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~-viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~  181 (340)
                      ++|.|+++|++|.|++.+|+++++++++.|+++||+++ ++++|||+|++|+++   ++.+| +|++||+|+|.||++|+
T Consensus        83 taG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~---~k~sg-~p~~rv~g~t~LDs~R~  158 (343)
T 3fi9_A           83 SGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRL  158 (343)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH---HHHHT-CCGGGEEEECCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH---HHHcC-CCcceEEEecCcHHHHH
Confidence            99999999999999999999999999999999999996 899999999999997   78998 99999999999999999


Q ss_pred             HHHHHHHcCCCCCCCc-eeEEEecCCCccccccccCCCCC-C---------CChHHHHHHHHHHhcchhhhhhhhcCCC-
Q 019519          182 KTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKG-  249 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~~kg-  249 (340)
                      ++++|+++|++|++|+ ++||||||+ +++|+||++++++ +         +++++|+++.++++++|++|++.|   | 
T Consensus       159 ~~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---g~  234 (343)
T 3fi9_A          159 QSELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR---GR  234 (343)
T ss_dssp             HHHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH---SS
T ss_pred             HHHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc---CC
Confidence            9999999999999997 899999998 9999999998864 1         367789999999999999999964   4 


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCCCCccEEEEeEEEcCCceEEEecCCC-CCHHHHHHHHHHHHHH
Q 019519          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVTELPFFASKVRLGKNGVEEVLGLGP-LSDFEQEGLEKLKPEL  327 (340)
Q Consensus       250 ~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~-L~~~E~~~l~~s~~~l  327 (340)
                      ++++|+|.++++++++|++|.+.   ++|++ +++|++.+|+|||+||++|++|++.+ .+.+ |+++|+++|++|++.|
T Consensus       235 ss~~s~A~a~~~~~~ail~d~~~---v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l  310 (343)
T 3fi9_A          235 SSFQSPSYVSIEMIRAAMGGEAF---RWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHL  310 (343)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSCC---CSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHH
T ss_pred             CcHHhHHHHHHHHHHHHHhCCCc---eEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHH
Confidence            44679999999999999998753   56664 67877678999999999999999876 4422 8999999999999999


Q ss_pred             HHHHHHHhh
Q 019519          328 KASIEKGVK  336 (340)
Q Consensus       328 ~~~~~~~~~  336 (340)
                      ++.++....
T Consensus       311 ~~~~~~~~~  319 (343)
T 3fi9_A          311 AKLRDEVIA  319 (343)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=5.7e-61  Score=454.05  Aligned_cols=296  Identities=23%  Similarity=0.387  Sum_probs=257.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC-CCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|.. +...++...  ++ +++++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEECC
Confidence            379999998 999999999999999899999999987  678899999875 112333332  23 68899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHH
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~  183 (340)
                      |.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||++|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT---WKFSG-FPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH---HHHcC-CCHHHEEeccccchHHHHHH
Confidence            999999999999999999999999999999999999999999999999987   78888 999999999 9999999999


Q ss_pred             HHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC----------CCChHHHHHHHHHHhcchhhhhhhhcCCCCccc
Q 019519          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSATL  253 (340)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~  253 (340)
                      ++|+++|+++++|++++||+||+ +++|+||++++++          .++++.++++.+++++++++|++   +||+++|
T Consensus       157 ~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~  232 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATFY  232 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCCH
T ss_pred             HHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhee---CCCcchH
Confidence            99999999999999999999998 9999999998753          15666789999999999999998   5689999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 019519          254 SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASI  331 (340)
Q Consensus       254 s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~  331 (340)
                      ++|.++++++++|++|.+   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus       233 ~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~  308 (318)
T 1ez4_A          233 GIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVL  308 (318)
T ss_dssp             HHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999854   577886 579988 34999999999999999999987 999999999999999999999


Q ss_pred             HHHhhhhh
Q 019519          332 EKGVKFAN  339 (340)
Q Consensus       332 ~~~~~~~~  339 (340)
                      ++..++++
T Consensus       309 ~~~~~~~~  316 (318)
T 1ez4_A          309 NDGLAELE  316 (318)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99988876

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1e-60  Score=453.57  Aligned_cols=297  Identities=27%  Similarity=0.429  Sum_probs=259.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC-CCceEEEEecCCccccccCCCCEEEEc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      +++||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|.. ....+....  ++ +++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4589999998 999999999999999899999999987  678899999875 112333332  23 6889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~  182 (340)
                      +|.|+++|++|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||++|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT---WKLSG-FPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH---HHHcC-CCHHHEEEccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999987   78888 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-----------CCChHHHHHHHHHHhcchhhhhhhhcCCCCc
Q 019519          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (340)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  251 (340)
                      +++|+++|+++++|++++||+||+ +++|+||++++++           .++++.++++.+++++++++|++   +||++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~---~kG~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH---HHSCC
T ss_pred             HHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH---cCCCc
Confidence            999999999999999999999998 9999999998753           14556678999999999999998   56899


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       252 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      +|++|.++++++++|++|.+   .+++++ +++|.| .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|++
T Consensus       236 ~~~~a~aa~~~~~ai~~~~~---~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~  311 (326)
T 2zqz_A          236 FYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKK  311 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCC---cEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999854   477886 689988 34999999999999999999987 9999999999999999999


Q ss_pred             HHHHHhhhhh
Q 019519          330 SIEKGVKFAN  339 (340)
Q Consensus       330 ~~~~~~~~~~  339 (340)
                      .+++..++++
T Consensus       312 ~~~~~~~~~~  321 (326)
T 2zqz_A          312 VLTDAFAKND  321 (326)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHhhh
Confidence            9999988876

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=1.1e-59  Score=450.46  Aligned_cols=299  Identities=25%  Similarity=0.255  Sum_probs=252.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcce---EEEEeCCC------cHHHHHHHhcCCCC--ceEEEEecCCccccccC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR---LALYDIAN------TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~e---l~L~D~~~------~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~   95 (340)
                      +++||+||||+|+||+++++.|+.+++++|   |+|+|.+.      ++|.++||+|+.++  ..+...   ++.+++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~---~~~y~~~~  107 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG---IDPYEVFE  107 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE---SCHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe---cCCHHHhC
Confidence            468999999779999999999999998887   77766543      48999999999742  244443   23469999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-  173 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-  173 (340)
                      |||+||++||.||++||+|.|++..|++|++++++.|.++ +|++++|++|||+|++|+++   ++++| +++.|+||. 
T Consensus       108 daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia---~k~sg-~~~~rvig~g  183 (375)
T 7mdh_A          108 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAP-DIPAKNFHAL  183 (375)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCT-TSCGGGEEEC
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH---HHHcC-CCCccEEEee
Confidence            9999999999999999999999999999999999999998 79999999999999999997   78888 555678888 


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCce-eEEEecCCCccccccccCCCCC-C---C-ChHH--HHHHHHHHhcchhhhhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N---L-ADED--IKALTKRTQDGGTEVVEAK  245 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~---~-~~~~--~~~l~~~v~~~~~~i~~~~  245 (340)
                      |.||++||++++|+++|++|++|+. +||||||+ ++||+||++++++ +   + .++.  .+++.+++++++++|++.|
T Consensus       184 T~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k  262 (375)
T 7mdh_A          184 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW  262 (375)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999985 89999998 9999999999864 2   2 2333  3789999999999999964


Q ss_pred             cCCCCccch-HHHHHHHHHHHHHcCCCCCCcEEEee-eeeC-CC--CCccEEEEeEEEcCCceEEEec-CCCCCHHHHHH
Q 019519          246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEG  319 (340)
Q Consensus       246 ~~kg~~~~s-~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~~  319 (340)
                         |.++|+ .|.++++.+.+|+++.+ ++.++|++ +++| .|  ++|+|||+||++|++|++++++ + +|+++|+++
T Consensus       263 ---G~ts~a~aa~~i~~~i~~~l~g~d-~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l-~L~~~E~~~  337 (375)
T 7mdh_A          263 ---GRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDV-SNDDFLWER  337 (375)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCC-CCCHHHHHH
T ss_pred             ---CCCchHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCC-CCCHHHHHH
Confidence               555553 44455555555565432 23588997 5789 68  5899999999999999999996 6 999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 019519          320 LEKLKPELKASIEKGVKFA  338 (340)
Q Consensus       320 l~~s~~~l~~~~~~~~~~~  338 (340)
                      |++|+++|+++.+.+...+
T Consensus       338 l~~Sa~~L~~e~~~~~~~~  356 (375)
T 7mdh_A          338 IKKSEAELLAEKKCVAHLT  356 (375)
T ss_dssp             HHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999998877665

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=8.6e-60  Score=444.59  Aligned_cols=288  Identities=24%  Similarity=0.317  Sum_probs=261.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC---CCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|..   ...++..    ++ +++++|||+||++
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~----~~-~~a~~~aD~Vii~   74 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA----GS-YGDLEGARAVVLA   74 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE----CC-GGGGTTEEEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE----CC-HHHhCCCCEEEEC
Confidence            69999998 999999999999999899999999987  678899999975   1234442    34 6889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~  182 (340)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |+||+.|++
T Consensus        75 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~  150 (310)
T 2xxj_A           75 AGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA---YALSG-LPPGRVVGSGTILDTARFR  150 (310)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH---HHHcC-CCHHHEEecCcchhHHHHH
Confidence            9999999999999999999999999999999999999999999999999997   78888 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC------------CChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~------------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      +++|+++|+++++|++++||+||+ +++|+||++++++.            ++++.++++.+++++++++|++   +||+
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  226 (310)
T 2xxj_A          151 ALLAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGA  226 (310)
T ss_dssp             HHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHH---HHSC
T ss_pred             HHHHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHh---ccCC
Confidence            999999999999999999999998 99999999987531            3566789999999999999998   4689


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      ++|++|.++++++++|++|.+   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       227 t~~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  302 (310)
T 2xxj_A          227 TYYGIGAGLARLVRAILTDEK---GVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILK  302 (310)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCC---CEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999854   577886 578887 47899999999999999999997 999999999999999999


Q ss_pred             HHHHHH
Q 019519          329 ASIEKG  334 (340)
Q Consensus       329 ~~~~~~  334 (340)
                      +.+++.
T Consensus       303 ~~~~~~  308 (310)
T 2xxj_A          303 EAAFAL  308 (310)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=9e-60  Score=444.11  Aligned_cols=292  Identities=25%  Similarity=0.441  Sum_probs=265.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEEc
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ||+|||| |+||+++++.++..++ +||+|+|+++  +++.++|+.|..    ...++..+   +|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t---~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS---NSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE---SCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC---CCH-HHhCCCCEEEEe
Confidence            7999998 9999999999998888 8999999997  678899998863    24456653   465 889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~  182 (340)
                      +|.|+++|++|.|++.+|++++++++++++++||++|+|++|||+|++|+++   ++.+| +|++||||+ |+||++|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~~~-~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM---YKKTG-FPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---HHhcC-CChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999987   78888 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----CChHHHHHHHHHHhcchhhhhhhhcCCC-CccchHH
Q 019519          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKG-SATLSMA  256 (340)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg-~~~~s~A  256 (340)
                      +++|+++|+++++|++++||+||+ +++|+||++++++ +    +++++++++.+++++++++|++   +|| +++|++|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITE---LRGYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHH---HHSSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhh---CCCCccHHHHH
Confidence            999999999999999999999998 9999999998854 2    4677789999999999999998   468 8999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019519          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG  334 (340)
Q Consensus       257 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  334 (340)
                      .++++++++|++|++   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       227 ~a~~~~~~ai~~~~~---~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~  302 (308)
T 2d4a_B          227 AGLVLTVEAIKRDSK---RIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETL  302 (308)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhCCC---cEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999863   578885 689987 57999999999999999999987 999999999999999999999988


Q ss_pred             hhhhh
Q 019519          335 VKFAN  339 (340)
Q Consensus       335 ~~~~~  339 (340)
                      .++|.
T Consensus       303 ~~~l~  307 (308)
T 2d4a_B          303 PPQLR  307 (308)
T ss_dssp             CHHHH
T ss_pred             HHHhc
Confidence            76664

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=2.7e-60  Score=451.34  Aligned_cols=302  Identities=26%  Similarity=0.350  Sum_probs=261.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcce-----EEEEeCCC----cHHHHHHHhcCCCCceEEEEecCCccccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~e-----l~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (340)
                      +++||+|+||+|+||+++++.|+.+++++|     |+|+|+++    ++|.++||+|+..+. +.....+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCCC
Confidence            468999999889999999999999998888     99999974    589999999975321 22222234557899999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cc
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA-IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT  175 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~  175 (340)
                      |+||++||.||++|++|.|++..|+++++++++.+++++|++ |++++|||+|++|+++   ++++|.+|++ +||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~---~~~~~~~p~~-~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA---SKSAPSIPKE-NFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGG-GEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH---HHHcCCCCcC-EEEEEEh
Confidence            999999999999999999999999999999999999999987 7999999999999997   6788645554 5665 99


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCcee-EEEecCCCccccccccCCC--CC-CCC------hHH--HHHHHHHHhcchhhhhh
Q 019519          176 LDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATP--KA-NLA------DED--IKALTKRTQDGGTEVVE  243 (340)
Q Consensus       176 ld~~R~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v--~~-~~~------~~~--~~~l~~~v~~~~~~i~~  243 (340)
                      ||++|+++++|+++|++|++|+++ ||||||+ ++||+||++++  ++ +++      ++.  .+++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988 5999999 99999999975  33 222      222  35899999999999999


Q ss_pred             hhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeC-CC--CCccEEEEeEEEcCCceEEEec-CCCCCHHHHH
Q 019519          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQS-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQE  318 (340)
Q Consensus       244 ~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g-~~--~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~  318 (340)
                      .+  ++++.|++|.++++++++|++|++. +.++||++ ++| +|  ++|+|||+||++ ++|++++++ + +|+++|++
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~~il~~~~~-~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l-~L~~~E~~  310 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVRDIWFGTPE-GEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGL-PINDFSRE  310 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHHHHHHCCCT-TCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCC-CCCHHHHH
T ss_pred             cc--CchHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCC-CCCHHHHH
Confidence            64  4578999999999999999998752 25889974 688 88  579999999999 999999987 7 99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q 019519          319 GLEKLKPELKASIEKGVKFAN  339 (340)
Q Consensus       319 ~l~~s~~~l~~~~~~~~~~~~  339 (340)
                      +|++|+++|+++++++++||+
T Consensus       311 ~l~~sa~~L~~~~~~~~~~l~  331 (333)
T 5mdh_A          311 KMDLTAKELAEEKETAFEFLS  331 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999986

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=2.9e-59  Score=444.85  Aligned_cols=299  Identities=26%  Similarity=0.319  Sum_probs=246.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCCC----cHHHHHHHhcCCCCceEEEEecCCccccccCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~   96 (340)
                      |.+.||+|+||+|+||+++++.|++.++++     ||+|+|+++    .+|.++||+|+.++........ +|.+++++|
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~-~~~~~a~~~  100 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT-ADPRVAFDG  100 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE-SCHHHHTTT
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc-CChHHHhCC
Confidence            446799999988999999999999987765     999999986    3788999999986544444333 466899999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHh-CCCCCCceEe-c
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFG-V  173 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~s-g~~~~~kviG-~  173 (340)
                      ||+||++||.||+|||+|.|++..|++|++++++.|.++| |+++++++|||+|++|+++   ++++ | +++.|+|| .
T Consensus       101 advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~---~~~~~g-~~~~r~i~~~  176 (345)
T 4h7p_A          101 VAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL---LKSAQG-KLNPRHVTAM  176 (345)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHHTTT-CSCGGGEEEC
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH---HHHccC-CCCcceeeec
Confidence            9999999999999999999999999999999999999998 7899999999999999987   5554 6 66556555 4


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCc-eeEEEecCCCccccccccCCCCCC-----CChHHH-HHHHHHHhcchhhhhhhhc
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKAN-----LADEDI-KALTKRTQDGGTEVVEAKA  246 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~~-----~~~~~~-~~l~~~v~~~~~~i~~~~~  246 (340)
                      |.||++|+++++|+++|++|++|+ .+|||+||+ ++||+||++++++.     ++++++ +++.++++++|++|++.+ 
T Consensus       177 t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k-  254 (345)
T 4h7p_A          177 TRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR-  254 (345)
T ss_dssp             CHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHHHHHH-
T ss_pred             cchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhhhhcC-
Confidence            999999999999999999999997 458899999 99999999998652     333443 579999999999999975 


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-ee-eCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHH
Q 019519          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FV-QSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (340)
Q Consensus       247 ~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~-~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~  322 (340)
                       +++++||+|.++++++++|+++.+... ++++. +. +|+|  |+|+|||+||+++ +|.++++...+|+++|+++|++
T Consensus       255 -g~ss~~s~a~a~~~~~~~~l~~~~~~~-~vs~~v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~e~~~l~~  331 (345)
T 4h7p_A          255 -GLSSAMSAAKAAVDHVHDWIHGTPEGV-YVSMGVYSDENPYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLAS  331 (345)
T ss_dssp             -SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCTTCCCSSCEEEEEEEEE-TTEEEECCSCC-----CGGGHH
T ss_pred             -CCcchhhHHHHHHHHHHHHhcCCCCce-EEEEEEEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHHHHHHHHH
Confidence             357899999999999999999986542 23333 33 5777  7899999999997 6777777744899999999999


Q ss_pred             HHHHHHHHHHHH
Q 019519          323 LKPELKASIEKG  334 (340)
Q Consensus       323 s~~~l~~~~~~~  334 (340)
                      |+++|+++.+.|
T Consensus       332 s~~~L~~E~~~A  343 (345)
T 4h7p_A          332 TIAELQEERAQA  343 (345)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999987653

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=4.8e-59  Score=441.02  Aligned_cols=294  Identities=24%  Similarity=0.385  Sum_probs=261.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      |+++||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|...  ...+....  ++ +++++|||+||
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVv   79 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVV   79 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEE
Confidence            45689999998 999999999999888889999999987  5778899987531  12333332  23 68899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHH
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R  180 (340)
                      +++|.|+++|++|.+++.+|+++++++++.|.++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||++|
T Consensus        80 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~---~k~~~-~p~~rviG~gt~lD~~r  155 (317)
T 3d0o_A           80 ICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYAT---WKFSG-LPKERVIGSGTILDSAR  155 (317)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH---HHHhC-CCHHHEEecCccccHHH
Confidence            999999999999999999999999999999999999999999999999999987   78888 999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC----------CChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      +++++|+++|+++++|++++||+||+ +++|+||++++++.          ++++.++++.+++++++++|++   +||+
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  231 (317)
T 3d0o_A          156 FRLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKGA  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH---HHSC
T ss_pred             HHHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe---CCCC
Confidence            99999999999999999999999998 99999999987531          3455678999999999999998   4689


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      ++|++|.++++++++|++|.+   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|+
T Consensus       232 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  307 (317)
T 3d0o_A          232 TYYGVAMGLARITEAIFRNED---AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLK  307 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999854   577886 579988 34999999999999999999987 999999999999999999


Q ss_pred             HHHHHHh
Q 019519          329 ASIEKGV  335 (340)
Q Consensus       329 ~~~~~~~  335 (340)
                      +.+++..
T Consensus       308 ~~~~~~~  314 (317)
T 3d0o_A          308 DIMAEAE  314 (317)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            9987654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=2.4e-58  Score=433.73  Aligned_cols=291  Identities=28%  Similarity=0.393  Sum_probs=260.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC--CC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~--~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |||+||||+|+||+++++.|+..++..|++|+|+  ++  +++.++||.|... ...+....  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999779999999999998888889999999  65  4677889988632 12233332  24 6889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~  182 (340)
                      +|.|+++|++|.+++.+|+++++++++.+++++|++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~---~~~~~-~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL---YEAGD-RSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH---HHHSS-SCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH---HHHcC-CCHHHeeecccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999999987   78888 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC--CC-ChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHH
Q 019519          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA--NL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG  259 (340)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~--~~-~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~  259 (340)
                      +++|+++|+++++|++++|||||+ +++|+||++++++  ++ ++++++++.+++++++++|++   +||+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHHH
Confidence            999999999999999999999998 9999999998743  34 677889999999999999998   5789999999999


Q ss_pred             HHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019519          260 AIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG  334 (340)
Q Consensus       260 ~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  334 (340)
                      ++++++|++|++   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|++.+++.
T Consensus       230 ~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  302 (303)
T 1o6z_A          230 AHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDKI  302 (303)
T ss_dssp             HHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC---CEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999864   478875 578987 57899999999999999999987 999999999999999999998753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.1e-58  Score=438.52  Aligned_cols=293  Identities=28%  Similarity=0.404  Sum_probs=253.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      +++||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|... ...++...  ++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4589999998 999999999999999999999999987  6788999998752 22444432  34 6889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~  182 (340)
                      +|.|+++|++|.|++.+|+++++++++.|.++||++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~---~k~s~-~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI---QKWSG-LPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH---HHHcC-CCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987   78888 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---C--------ChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L--------ADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---~--------~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      +++|+++|+++++|++++|||||+ +++|+||++++++ +   +        +++.++++.+++++++++|++   +||+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---HTSC
T ss_pred             HHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhh---CCCc
Confidence            999999999999999999999998 9999999998743 1   2        233468999999999999998   5689


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      ++|++|.++++++++|++|.+   .+++++ +++|+| .+|+|||+||++|++|+++++.+ +|+++|+++|++|+++|+
T Consensus       234 t~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  309 (318)
T 1y6j_A          234 TYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVK  309 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999854   467776 578987 57899999999999999999887 999999999999999999


Q ss_pred             HHHHHHh
Q 019519          329 ASIEKGV  335 (340)
Q Consensus       329 ~~~~~~~  335 (340)
                      +.+++..
T Consensus       310 ~~~~~~~  316 (318)
T 1y6j_A          310 KVLNEVK  316 (318)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            9998754

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=2e-60  Score=449.66  Aligned_cols=280  Identities=22%  Similarity=0.298  Sum_probs=253.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC---CceEEEEecCCccccccCCCCEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      +.+||+|||+ |.||+++++.++..++++||+|+|+++  +++.++||+|...   ..++...   +|+ ++++|||+||
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t---~d~-~~~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSG---KDY-SVSAGSKLVV   94 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEE---SSS-CSCSSCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEc---CCH-HHhCCCCEEE
Confidence            4579999998 999999999999999999999999987  6899999998732   3355443   566 5699999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHH
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R  180 (340)
                      +++|.|+++||+|.|++.+|+++++++++++.++||++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~---~k~sg-~p~~rViG~gt~LDs~R  170 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD---WKLSG-LPMHRIIGSGCNLDSAR  170 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEECCTTHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH---HHHhC-CCHHHeecccCchhHHH
Confidence            999999999999999999999999999999999999999999999999999997   78888 999999999 6999999


Q ss_pred             HHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHH---
Q 019519          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY---  257 (340)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~---  257 (340)
                      +++++|+++|+++++|+++|||+||+ +++|+||+.     +    .+++.++++++|++|++   .||+++|++|.   
T Consensus       171 ~~~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~~-----~----~~~~~~~v~~~g~eii~---~kg~t~~a~a~~~~  237 (330)
T 3ldh_A          171 FRYLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSGM-----W----DAKLHKDVVDSAYEVIK---LKGYTSWAIGLVVS  237 (330)
T ss_dssp             HHHHHHHHHTSCTTTCCEEECSSSST-TCCEEEEEE-----E----ETTEEHHHHHCCCTTST---TCHHHHHHHHHTTH
T ss_pred             HHHHHHHHhCCCHHHeEEEEEcCCCC-ceeeechhh-----H----HHHHHHHHHHHHHHHHH---ccCCcceeeeeecc
Confidence            99999999999999999999999998 999999981     1    15778889999999998   46899999999   


Q ss_pred             --------------HHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEE--EecCCCCCHHHHH
Q 019519          258 --------------AGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEE--VLGLGPLSDFEQE  318 (340)
Q Consensus       258 --------------a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~--i~~~~~L~~~E~~  318 (340)
                                    ++++++++|+.+.+   .++|++ +++|+|  ++|+|||+||++| +|+++  ++++ +|+++|++
T Consensus       238 ~~~~~~~~~~~~~~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~-~L~~~E~~  312 (330)
T 3ldh_A          238 NPVDVLTYVAWKGCSVADLAQTIMKDLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKM-KLKPDEEQ  312 (330)
T ss_dssp             HHHTTSSSCSCTHHHHHHHHHHHHHTCC---EEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCC-CCCHHHHH
T ss_pred             CccchhhhhhhHHHHHHHHHHHHHcCCC---ceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecC-CCCHHHHH
Confidence                          99999999999853   588987 578988  5699999999999 99999  9997 99999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 019519          319 GLEKLKPELKASIEK  333 (340)
Q Consensus       319 ~l~~s~~~l~~~~~~  333 (340)
                      +|++|+++|++.++.
T Consensus       313 ~l~~s~~~l~~~~~~  327 (330)
T 3ldh_A          313 QLQKSATTLWDIQKD  327 (330)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=9.7e-58  Score=430.67  Aligned_cols=291  Identities=30%  Similarity=0.502  Sum_probs=255.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      +||+|||| |+||+++++.++..++++ |+|+|+++  +++.++||.|..    ...++..+   +|+ ++++|||+||+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t---~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT---NNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE---SCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC---CCH-HHHCCCCEEEE
Confidence            69999998 999999999999988764 99999987  578889999863    23456653   566 88999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      ++|.|+++|++|.|++.+|+++++++++.++++||++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~---~~~~~-~~~~rviG~gt~LD~~r~  152 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA---AEVSG-FPKERVIGQAGVLDAARY  152 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH---HHHcC-CCHHHEEECCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999999987   77888 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----CChHHHHHHHHHHhcchhhhhhhhcCCCCccchHH
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A  256 (340)
                      ++++|+++|+++++|++++||+||+ +++|+||++++++ +    +++++++++.+++++++++|++. .+||+++|++|
T Consensus       153 ~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~a  230 (309)
T 1ur5_A          153 RTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAPA  230 (309)
T ss_dssp             HHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHHH
T ss_pred             HHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHHH
Confidence            9999999999999999999999998 9999999998754 2    46778899999999999999985 35789999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019519          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG  334 (340)
Q Consensus       257 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  334 (340)
                      .++++++++|++|++   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|++.+++.
T Consensus       231 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  306 (309)
T 1ur5_A          231 AATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDTL  306 (309)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999863   578885 689987 57999999999999999999997 999999999999999999999875


Q ss_pred             h
Q 019519          335 V  335 (340)
Q Consensus       335 ~  335 (340)
                      .
T Consensus       307 ~  307 (309)
T 1ur5_A          307 K  307 (309)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=2.1e-57  Score=429.20  Aligned_cols=292  Identities=27%  Similarity=0.416  Sum_probs=256.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC--CC--cHHHHHHHhcCC-C---CceEEEEecCCccccccCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHIN-T---RSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~--~~--~~~~~~dl~~~~-~---~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      |||+||||+|+||+++++.|+..++..|++|+|+  ++  +++.++||.|.. .   ..++..  ++++++++++|||+|
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~d~l~~al~gaD~V   78 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYV--ESDENLRIIDESDVV   78 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEE--EETTCGGGGTTCSEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEe--CCcchHHHhCCCCEE
Confidence            6999999999999999999999888889999999  65  467888998753 1   224433  112367999999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHH
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~  179 (340)
                      |++||.|+++|++|.+++.+|+++++++++.++++| ++|++++|||+|++|+++   ++.+| +|++|+||+ |.||+.
T Consensus        79 i~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~---~k~~~-~p~~rviG~gt~LD~~  153 (313)
T 1hye_A           79 IITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA---LVDSK-FERNQVFGLGTHLDSL  153 (313)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH---HHHHC-CCTTSEEECTTHHHHH
T ss_pred             EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH---HHhhC-cChhcEEEeCccHHHH
Confidence            999999999999999999999999999999999999 999999999999999997   78888 999999999 999999


Q ss_pred             HHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC----C---CChHHHHHHHHHHhcchhhhhhhhcCCCCcc
Q 019519          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N---LADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (340)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~---~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  252 (340)
                      |+++++|+++|+++++|++++||+||+ +++|+||++++++    .   +++++++++.+++++++++|++   +||+++
T Consensus       154 r~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~  229 (313)
T 1hye_A          154 RFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSE  229 (313)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------
T ss_pred             HHHHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcH
Confidence            999999999999999999999999998 9999999998754    2   2556689999999999999998   578999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       253 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      |++|.++++++++|++|++   .+++++ +++|.|  .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|++
T Consensus       230 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~  305 (313)
T 1hye_A          230 FGPAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKK  305 (313)
T ss_dssp             CCHHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---eEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   477776 578987  36999999999999999999987 9999999999999999999


Q ss_pred             HHHHHh
Q 019519          330 SIEKGV  335 (340)
Q Consensus       330 ~~~~~~  335 (340)
                      .+++..
T Consensus       306 ~~~~~~  311 (313)
T 1hye_A          306 YCEEVK  311 (313)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=1.4e-57  Score=427.89  Aligned_cols=285  Identities=20%  Similarity=0.285  Sum_probs=247.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+++||+|||| |+||+++++.++..++++||+|+|+++ +.+.++|+.|... +++..+   +|+ ++++|||+||+++
T Consensus        12 ~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~~i~~t---~d~-~~l~~aD~Vi~aa   85 (303)
T 2i6t_A           12 KTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL-PNVEIS---KDL-SASAHSKVVIFTV   85 (303)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC-TTEEEE---SCG-GGGTTCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC-CCeEEe---CCH-HHHCCCCEEEEcC
Confidence            34579999998 999999999999989899999999987 6778889988553 367663   566 8899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHHH
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~~  183 (340)
                      |.+ ++||+|.|++.+|++++++++++++++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+.|+++
T Consensus        86 g~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~---~~~~~-~p~~rviG~gt~Ld~~R~~~  160 (303)
T 2i6t_A           86 NSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVT---WKLST-FPANRVIGIGCNLDSQRLQY  160 (303)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHH
T ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHH---HHhcC-CCHHHeeCCCCCchHHHHHH
Confidence            996 79999999999999999999999999999999999999999999987   78888 999999999 9999999999


Q ss_pred             HHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCccchHHHHHHHHH
Q 019519          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA  263 (340)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A~a~~~li  263 (340)
                      ++|+++|+++++|++++||+||+ +++|+||+..   ++.   .+++.+++++++++|++   +||+++||+|.++++++
T Consensus       161 ~la~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~---~~~---~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~  230 (303)
T 2i6t_A          161 IITNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQE---EVV---SHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMV  230 (303)
T ss_dssp             HHHHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSS---CCC---CHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCChHHeEEEEecCCCC-Cccccccccc---ccc---HHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHH
Confidence            99999999999999999999998 8999999963   121   24567778889999987   67899999999999999


Q ss_pred             HHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019519          264 DACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG  334 (340)
Q Consensus       264 ~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  334 (340)
                      ++|++|++   .+++++ +++|+|  ++|+|||+||++|++|+++++++++|+++|+++|++|++.|++.+++.
T Consensus       231 ~ai~~~~~---~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~~  301 (303)
T 2i6t_A          231 DSIVNNKK---KVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQL  301 (303)
T ss_dssp             HHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCC---cEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999874   477776 578988  679999999999999999998876899999999999999999988753

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=1.1e-57  Score=431.52  Aligned_cols=292  Identities=24%  Similarity=0.362  Sum_probs=260.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      +++||+|||+ |.+|+++++.++..++++||+|+|+++  +++.++|+.|...  ...++..+  ++ +++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEE
Confidence            4579999998 999999999999888889999999987  5777889988642  11333332  23 588999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      ++|.|+++|++|.+++.+|.++++++++.+++++|++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~---~~~s~-~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT---WKFSG-LPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHT-CCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH---HHHhC-CCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999987   78888 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC----C-------CChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N-------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~-------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      ++++|+++|+++++|++++||+||+ +++|+||++++++    .       +++++++++.+++++++++|++   +||+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KKGA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHH---HHSC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHh---ccCC
Confidence            9999999999999999999999998 9999999988753    1       3345578999999999999998   4689


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      ++|++|.++++++++|++|.+   .+++++ +++|.| .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|+
T Consensus       233 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  308 (316)
T 1ldn_A          233 TYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLK  308 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999854   577886 589988 57999999999999999999997 999999999999999999


Q ss_pred             HHHHHH
Q 019519          329 ASIEKG  334 (340)
Q Consensus       329 ~~~~~~  334 (340)
                      +.+++.
T Consensus       309 ~~~~~~  314 (316)
T 1ldn_A          309 SVLARA  314 (316)
T ss_dssp             HHHHHS
T ss_pred             HHHHHH
Confidence            999865

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=5.4e-56  Score=420.79  Aligned_cols=290  Identities=31%  Similarity=0.493  Sum_probs=260.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +++||+|||| |.+|+++++.|+..++++ |+|+|+++  +++.++|+.+..    ...++..+   +|+ ++++|||+|
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t---~d~-~al~~aD~V   76 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS---NTY-DDLAGADVV   76 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE---CCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC---CCH-HHhCCCCEE
Confidence            3579999998 999999999999998764 99999987  577788888752    24456653   566 889999999


Q ss_pred             EEcCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-c
Q 019519          101 IIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (340)
Q Consensus       101 i~~ag~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~  174 (340)
                      |+++|.|+++|++     |.|++.+|+++++++++.|+++||++|+|++|||++++|+++   ++.+| +|++||+|+ |
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~---~~~~g-~~~~rviG~gt  152 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL---HQHSG-VPKNKIIGLGG  152 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECCH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH---HHhcC-CChHHEEeccC
Confidence            9999999999999     999999999999999999999999999999999999999987   67788 999999999 5


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC----------CCChHHHHHHHHHHhcchhhhhhh
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~  244 (340)
                      .||++|+++++|+++|+++++|++++||+||+ +++|+||++++++          .+++++++++.+++++++++|++.
T Consensus       153 ~ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~  231 (322)
T 1t2d_A          153 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999998 9999999998753          146666889999999999999995


Q ss_pred             hcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHH
Q 019519          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (340)
Q Consensus       245 ~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~  322 (340)
                         ||+++||+|.++++++++|++|++   .+++++ +++|.| .+|+|||+||++|++|+++++++ +|+++|+++|++
T Consensus       232 ---kgs~~~~~a~a~~~~~~ai~~~~~---~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~  304 (322)
T 1t2d_A          232 ---HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  304 (322)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             ---cCchHHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCC-CCCHHHHHHHHH
Confidence               579999999999999999999864   578875 689988 57999999999999999999987 999999999999


Q ss_pred             HHHHHHHHHHHH
Q 019519          323 LKPELKASIEKG  334 (340)
Q Consensus       323 s~~~l~~~~~~~  334 (340)
                      |++.|+++++.+
T Consensus       305 s~~~L~~~~~~~  316 (322)
T 1t2d_A          305 AIAETKRMKALA  316 (322)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=3e-55  Score=416.75  Aligned_cols=292  Identities=35%  Similarity=0.537  Sum_probs=261.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      ++||+|||| |.+|++++..++..+++ +|+|+|+++  +++.++++.|..    ...++..+   +|+ ++++|||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t---~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE---NNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE---SCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC---CCH-HHHCCCCEEE
Confidence            369999998 99999999999998875 499999997  566677777653    23467653   566 8899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chhHHH
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR  180 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld~~R  180 (340)
                      +++|.|+++|++|.|++.+|++++++++++|+++||++++|++|||+|++|+++   ++.+| +||+||+|+| .||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~---~~~~~-~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF---KEKSG-IPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHhcC-CChhhEEEeCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987   67788 9999999995 999999


Q ss_pred             HHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---------CChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      +++++|+++|+++++|++++||+||+ +++|+||++++++ +         +++++++++.+++++++++|++.+ ++|+
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            99999999999999999999999998 9999999988754 1         456677899999999999999864 6799


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      ++||+|.++++++++|++|.+   .+++++ +++|.| .+|+|||+||++|++|+++++.+ +|+++|+++|++|+..|+
T Consensus       242 ~~~~~a~a~~~i~~ai~~~~~---~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  317 (328)
T 2hjr_A          242 AFYAPAASAVAMAQAYLKDSK---SVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQ  317 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999864   578885 578988 57999999999999999999886 999999999999999999


Q ss_pred             HHHHHHh
Q 019519          329 ASIEKGV  335 (340)
Q Consensus       329 ~~~~~~~  335 (340)
                      +.++++.
T Consensus       318 ~~~~~~~  324 (328)
T 2hjr_A          318 NLVQDLK  324 (328)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998775

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=5e-55  Score=415.73  Aligned_cols=293  Identities=27%  Similarity=0.485  Sum_probs=260.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      +|||+|||| |.+|++++..|+..+++ +|+|+|+++  .++.+.++.|..    ...++..+   +|++++++|||+||
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t---~d~~ea~~~aDiVi   83 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE---YSYEAALTGADCVI   83 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE---CSHHHHHTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe---CCHHHHhCCCCEEE
Confidence            479999998 99999999999988874 599999998  466667777642    23466653   57777999999999


Q ss_pred             EcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cc
Q 019519          102 IPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT  175 (340)
Q Consensus       102 ~~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~  175 (340)
                      +++|.|+++|+     +|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||+|+ |.
T Consensus        84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~---~~~~~-~~~~rviG~gt~  159 (331)
T 1pzg_A           84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM---CEASG-VPTNMICGMACM  159 (331)
T ss_dssp             ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHH
T ss_pred             EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH---HHhcC-CChhcEEeccch
Confidence            99999999999     9999999999999999999999999999999999999999987   67788 999999999 69


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC----------CChHHHHHHHHHHhcchhhhhhhh
Q 019519          176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----------LADEDIKALTKRTQDGGTEVVEAK  245 (340)
Q Consensus       176 ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~----------~~~~~~~~l~~~v~~~~~~i~~~~  245 (340)
                      ||++|+++++|+++|+++++|++++||+||+ +++|+||++++++.          ++++.++++.+++++++++|++..
T Consensus       160 LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~~  238 (331)
T 1pzg_A          160 LDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL  238 (331)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHhh
Confidence            9999999999999999999999999999998 99999999987541          456667889999999999999852


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHH
Q 019519          246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (340)
Q Consensus       246 ~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s  323 (340)
                       +||+++||+|.++++++++|++|.+   .+++++ +++|.| .+|+|||+||++|++|+++++.+ +|+++|+++|++|
T Consensus       239 -~kgst~~~~a~a~~~ii~ai~~~~~---~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s  313 (331)
T 1pzg_A          239 -GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKS  313 (331)
T ss_dssp             -SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             -cCCCccchHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHH
Confidence             5789999999999999999999863   578885 578988 57999999999999999999886 9999999999999


Q ss_pred             HHHHHHHHHHHh
Q 019519          324 KPELKASIEKGV  335 (340)
Q Consensus       324 ~~~l~~~~~~~~  335 (340)
                      ++.|++.+++..
T Consensus       314 ~~~l~~~~~~~~  325 (331)
T 1pzg_A          314 VDDVMALNKAVA  325 (331)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998763

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=9.1e-55  Score=413.83  Aligned_cols=300  Identities=25%  Similarity=0.305  Sum_probs=259.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCc-----ceEEEEeCC----C--cHHHHHHHhcCCC--CceEEEEecCCccccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIA----N--TPGVAADVGHINT--RSEVAGYMGNDQLGQA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~-----~el~L~D~~----~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a   93 (340)
                      ++|||+||||+|+||+++++.|+..+++     .||+|+|++    +  .++.++||.|...  ...+..   ++|++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~---~~~~~~a   80 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTA---HADPMTA   80 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEE---ESSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEE---ecCcHHH
Confidence            4589999998899999999999988765     499999998    5  5688999999642  223333   3577899


Q ss_pred             cCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      ++|||+||++||.|+++|++|.+++.+|+++++++++.++++| |++++|++|||+|++|+++   ++.+++||++|++|
T Consensus        81 l~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~---~~~~~~~p~~~v~g  157 (329)
T 1b8p_A           81 FKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTA  157 (329)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH---HHHcCCCCHHHEEE
Confidence            9999999999999999999999999999999999999999997 9999999999999999997   67773499999999


Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCce-eEEEecCCCccccccccCCCCC-C----CChHH--HHHHHHHHhcchhhhhhh
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~  244 (340)
                      +|.||+.|+++++|+++|+++++|++ ++||+||+ +++|+||++++++ +    +++++  .+++.+++++++++|++.
T Consensus       158 ~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~  236 (329)
T 1b8p_A          158 MLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDA  236 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHH
T ss_pred             eecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999995 58999998 8999999999864 2    22223  478999999999999997


Q ss_pred             hcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEec-CCCCCHHHHHHH
Q 019519          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGL  320 (340)
Q Consensus       245 ~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~~l  320 (340)
                      | |. +.+++.|.++++++++|+++..+  .+++++ +++|+|  |+|+|||+||++ ++|++++++ + +|+++|+++|
T Consensus       237 k-g~-~~~~~~a~a~~~~~~ai~~~~~~--~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~-~l~~~e~~~l  310 (329)
T 1b8p_A          237 R-GV-SSAASAANAAIDHIHDWVLGTAG--KWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL-SIDAFSQERI  310 (329)
T ss_dssp             H-SS-CCHHHHHHHHHHHHHHHHHCCTT--CCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC-CCCHHHHHHH
T ss_pred             c-CC-ChHHHHHHHHHHHHHHHhcCCCC--cEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC-CCCHHHHHHH
Confidence            5 32 23444667899999999998422  467786 578887  689999999999 999999988 7 9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 019519          321 EKLKPELKASIEKGVKFAN  339 (340)
Q Consensus       321 ~~s~~~l~~~~~~~~~~~~  339 (340)
                      ++|++.|+++++.+.++|.
T Consensus       311 ~~s~~~l~~~~~~~~~~~~  329 (329)
T 1b8p_A          311 NVTLNELLEEQNGVQHLLG  329 (329)
T ss_dssp             HHHHHHHHHHHHHHGGGGC
T ss_pred             HHHHHHHHHHHHHHHHhhC
Confidence            9999999999999988763

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=5.1e-54  Score=405.50  Aligned_cols=293  Identities=31%  Similarity=0.511  Sum_probs=260.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|||+ |.+|++++..|+..+...+|+|+|+++  .++.++|+.|..    ...++..+   +|+ +++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t---~d~-~~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS---NDY-ADTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE---SCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC---CCH-HHHCCCCEEEE
Confidence            69999998 999999999999876566999999987  466677887752    23456543   466 45999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~  181 (340)
                      +++.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|++++++   ++.+| +|++|++|+ |+||++|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~---~~~~~-~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSG-LPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH---HHHHC-SCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHH---HHhcC-CChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999887   67788 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----CChHHHHHHHHHHhcchhhhhhhhcCCCCccchHH
Q 019519          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (340)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~A  256 (340)
                      ++++|+++|+++++|++++||+||+ +++|+||++++++ +    +++++++++.+++++++++|++. .+||+++|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999997 9999999998854 2    46777899999999999999985 35789999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019519          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG  334 (340)
Q Consensus       257 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~  334 (340)
                      .++++++++|++|++   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|+++|++.+++.
T Consensus       230 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  305 (310)
T 1guz_A          230 SSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKML  305 (310)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999863   578875 679987 57999999999999999999997 999999999999999999999876


Q ss_pred             hh
Q 019519          335 VK  336 (340)
Q Consensus       335 ~~  336 (340)
                      ..
T Consensus       306 ~~  307 (310)
T 1guz_A          306 ES  307 (310)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.4e-53  Score=401.40  Aligned_cols=283  Identities=26%  Similarity=0.334  Sum_probs=228.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC---CceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |||+|||| |.+|+++++.|+..++++||+|+|+++  .++.++|+.|...   ..++..    +| +++++|||+||++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~----~~-~~a~~~aDvVIi~   74 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH----GG-HSELADAQVVILT   74 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE----EC-GGGGTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE----CC-HHHhCCCCEEEEc
Confidence            59999998 999999999999999889999999987  4677889987651   233432    34 4789999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~  182 (340)
                      +|.|+++|++|.|++.+|+++++++++.+++++|+++++++|||++++++++   ++.   .|++||+|+ |.||+.|++
T Consensus        75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~---~~~---~~~~rviG~gt~Ld~~r~~  148 (304)
T 2v6b_A           75 AGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA---TQL---APGQPVIGSGTVLDSARFR  148 (304)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH---HHH---SCSSCEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH---HHh---CChhcEEeCCcCchHHHHH
Confidence            9999999999999999999999999999999999999999999999999886   455   389999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC------------CChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~------------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      +++|+++|+++++|+++++|+||+ +++|+||++++++.            ++++.++++.+++++++++|++   +||+
T Consensus       149 ~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~  224 (304)
T 2v6b_A          149 HLMAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRA  224 (304)
T ss_dssp             HHHHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCC
Confidence            999999999999999999999998 99999999988541            3566788999999999999998   5789


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      ++|++|.++++++++|++|.+   .++|++ +++| | . +|||+||++|++|+++++++ +|+++|+++|++|+++|++
T Consensus       225 t~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g-y-g-~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~  297 (304)
T 2v6b_A          225 TYYGIGAALARITEAVLRDRR---AVLTVSAPTPE-Y-G-VSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRG  297 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEETT-T-T-EEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHhCCC---cEEEEEEEECC-c-C-cEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999853   578886 5788 8 3 99999999999999999997 9999999999999999999


Q ss_pred             HHHHH
Q 019519          330 SIEKG  334 (340)
Q Consensus       330 ~~~~~  334 (340)
                      .+++.
T Consensus       298 ~~~~~  302 (304)
T 2v6b_A          298 FKQQL  302 (304)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            88754

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=5.4e-51  Score=386.30  Aligned_cols=289  Identities=29%  Similarity=0.468  Sum_probs=255.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC---CCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |||+|||+ |.+|++++..|+..++.++|+|+|+++  .++...++.+..   ...++..    +| ++++++||+||++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~----~d-~~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA----GD-YADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE----CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe----CC-HHHhCCCCEEEEc
Confidence            69999998 999999999999888778999999986  455566665432   1224432    35 4789999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R~~  182 (340)
                      ++.++++|++|.|++.+|+++++++++.|++++|++++|++|||++++++++   ++.+| +|++||+|+ |.||+.|++
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~---~~~~~-~~~~rviG~~t~ld~~r~~  150 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF---LKESG-MDPRKVFGSGTVLDTARLR  150 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEECTTHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH---HHHhC-CChhhEEeeCccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887   57777 999999999 689999999


Q ss_pred             HHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC-----------CChHHHHHHHHHHhcchhhhhhhhcCCCCc
Q 019519          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN-----------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (340)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~-----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  251 (340)
                      +++|+++|+++++|+++++|+||+ +++|+||++++++.           ++++.++++.++++++++++++   +||++
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~  226 (319)
T 1a5z_A          151 TLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGAT  226 (319)
T ss_dssp             HHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHH---HHSCC
T ss_pred             HHHHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhc---cCCch
Confidence            999999999999999999999998 89999999987531           4566788999999999999998   46899


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Q 019519          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA  329 (340)
Q Consensus       252 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~  329 (340)
                      +|++|.++++++++|++|.+   .+++++ +++|.| .+|+|||+||++|++|+++++.+ +|+++|+++|++|++.|++
T Consensus       227 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~  302 (319)
T 1a5z_A          227 HYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKN  302 (319)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCccceEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999853   578886 578887 57899999999999999999887 9999999999999999999


Q ss_pred             HHHHHh
Q 019519          330 SIEKGV  335 (340)
Q Consensus       330 ~~~~~~  335 (340)
                      .++++.
T Consensus       303 ~~~~~~  308 (319)
T 1a5z_A          303 AINEIT  308 (319)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.6e-49  Score=373.16  Aligned_cols=291  Identities=20%  Similarity=0.265  Sum_probs=248.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC--CCceEEEEecCCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ||||+|||+ |.+|++++..|+..++..+|+|+|+++  .++.+.++.|..  ....+...+  +|+ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe--CCH-HHhCCCCEEEEe
Confidence            479999997 999999999998887556999999986  456666766442  111233322  466 889999999999


Q ss_pred             CCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhH
Q 019519          104 AGVPRK----PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (340)
Q Consensus       104 ag~~~~----~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~  178 (340)
                      ++.|++    +|++|.+++.+|+++++++++.+.+++|+++++++|||++++++++   ++.++ +|++||+|+ |.||+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~---~~~~~-~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF---QHVTG-FPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHH---HHhcC-CCHHHEeecCccchH
Confidence            999988    9999999999999999999999999999999999999999999886   56677 999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C------CChHHHHHHHHHHhcchhhhhhhhcCCCCc
Q 019519          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (340)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  251 (340)
                      .|+++.+++.+++++++++++++|+||+ +++|+||++.+++ +      ++++.++++.++++++++++++.   ||++
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~~  228 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG---KGYT  228 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH---HSSC
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhc---cCCc
Confidence            9999999999999999999999999998 8999999998753 2      45667899999999999999984   5889


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 019519          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKAS  330 (340)
Q Consensus       252 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  330 (340)
                      +|++|.++++++++|++|.+   .+++++ +++|   +|+|+|+||++|++|+++++.+ +|+++|+++|++|++.|++.
T Consensus       229 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g---~~~~~~vP~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~  301 (309)
T 1hyh_A          229 SYGVATSAIRIAKAVMADAH---AELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQR  301 (309)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCC---cEEEEEEEECC---CCeEEEEEEEEeCCceEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999864   577875 5677   6999999999999999999887 99999999999999999999


Q ss_pred             HHHHhhh
Q 019519          331 IEKGVKF  337 (340)
Q Consensus       331 ~~~~~~~  337 (340)
                      +++..+-
T Consensus       302 ~~~~~~~  308 (309)
T 1hyh_A          302 FDEIVDT  308 (309)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhhh
Confidence            9987753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=1.3e-48  Score=369.57  Aligned_cols=292  Identities=33%  Similarity=0.491  Sum_probs=256.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      ++||+|||| |.+|+.++..|+..++. +|+|+|+++  .++..+|+.+..    ...++..+   +|+ +++++||+||
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t---~d~-~a~~~aDiVi   77 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT---DDY-ADISGSDVVI   77 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE---SCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC---CCH-HHhCCCCEEE
Confidence            479999998 99999999999988764 699999987  455566666542    23356543   566 8899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHH
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R  180 (340)
                      +++|.|+++|++|.|++.+|.++++++++.+++++|+++++++|||++++++.+   ++.++ +|++||+|+ |.+|+.|
T Consensus        78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~---~~~~~-~~~~rviG~~t~ld~~r  153 (317)
T 2ewd_A           78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF---QKVSG-LPHNKVCGMAGVLDSSR  153 (317)
T ss_dssp             ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHHHC-CCGGGEEESCHHHHHHH
T ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH---HHhhC-CCHHHEEeccCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999886   56777 999999999 5899999


Q ss_pred             HHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC----------CCChHHHHHHHHHHhcchhhhhhhhcCCCC
Q 019519          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (340)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  250 (340)
                      +++.+++++|+++++++++++|+||+ +++|.||.+++++          -++.++++++.+.++.++++++++. |+|+
T Consensus       154 ~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~  231 (317)
T 2ewd_A          154 FRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGT  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCc
Confidence            99999999999999999999999998 8999999997643          1466778888888888999999864 6889


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK  328 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~  328 (340)
                      ++|++|.++++++++|++|.+   .+++++ +++|.| .+|+|||+||++|++|+++++.+ +|+++|+++|++|++.|+
T Consensus       232 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  307 (317)
T 2ewd_A          232 AYFAPAAAAVKMAEAYLKDKK---AVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILEL-DLTPLEQKLLGESINEVN  307 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---eEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999998754   578875 578988 57999999999999999999887 999999999999999999


Q ss_pred             HHHHHHh
Q 019519          329 ASIEKGV  335 (340)
Q Consensus       329 ~~~~~~~  335 (340)
                      +.+++..
T Consensus       308 ~~~~~~~  314 (317)
T 2ewd_A          308 TISKVLD  314 (317)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998754

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=5.2e-46  Score=353.13  Aligned_cols=298  Identities=27%  Similarity=0.355  Sum_probs=251.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCc-----ceEEEEeCCC----cHHHHHHHhcCCCC--ceEEEEecCCccccccCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~-----~el~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~~   96 (340)
                      +|||+||||+|+||++++..|+..++.     .||+++|+++    ..+.++|+.|....  ..+..   +.++++++++
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~---~~~~~~a~~~   80 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEA---TDDPKVAFKD   80 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE---ESCHHHHTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEe---ccChHHHhCC
Confidence            479999998899999999999988764     3999999874    35667899876422  22332   2466789999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccc
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~  175 (340)
                      +|+||++||.+++++++|.+++..|+.+++++++.+++++ |+++++++|||+|.++++.   ++.++.++|.+++|.|.
T Consensus        81 ~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~---~~~~~~~~p~~~yg~tk  157 (327)
T 1y7t_A           81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTR  157 (327)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEECCH
T ss_pred             CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH---HHHcCCCChhheeccch
Confidence            9999999999999999999999999999999999999998 9999999999999888875   45552389999999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCce-eEEEecCCCccccccccCCCCC-C----CChHH-HHHHHHHHhcchhhhhhhhcCC
Q 019519          176 LDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADED-IKALTKRTQDGGTEVVEAKAGK  248 (340)
Q Consensus       176 ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~-~~~l~~~v~~~~~~i~~~~~~k  248 (340)
                      +|+.|+.+.+++.+|+++..++. +++|+|++ +++|.|++..+++ +    +++++ .+++.+++++++++|++.| | 
T Consensus       158 l~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g-  234 (327)
T 1y7t_A          158 LDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G-  234 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S-
T ss_pred             HHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C-
Confidence            99999999999999999999985 78999998 8999999987753 2    23333 4789999999999999975 2 


Q ss_pred             CCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEec-CCCCCHHHHHHHHHHH
Q 019519          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLEKLK  324 (340)
Q Consensus       249 g~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~~l~~s~  324 (340)
                      +++++++|.++++++++|++|.+ ++.+++++ +++|+|  |+|+|||+||++ ++|++++++ + +|+++|+++|++|+
T Consensus       235 ~~~~~~~a~a~~~~~~~i~~~~~-~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~-~l~~~e~~~l~~s~  311 (327)
T 1y7t_A          235 ASSAASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGL-EINEFARKRMEITA  311 (327)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCC-CCCHHHHHHHHHHH
Confidence            23345678899999999999852 12477886 578887  689999999999 999999988 6 99999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 019519          325 PELKASIEKGVKF  337 (340)
Q Consensus       325 ~~l~~~~~~~~~~  337 (340)
                      +.|+++++.+.++
T Consensus       312 ~~l~~~~~~~~~~  324 (327)
T 1y7t_A          312 QELLDEMEQVKAL  324 (327)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=3e-43  Score=343.18  Aligned_cols=287  Identities=14%  Similarity=0.112  Sum_probs=226.3

Q ss_pred             CCeEEEEcCCCChHHHH--HHHHHh--CCC-cceEEEEeCCC--cHHHHHHHhcCC--CCceEEEEecCCccccccCCCC
Q 019519           28 DRKVAVLGAAGGIGQPL--ALLMKL--NPL-VSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD   98 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~--a~~l~~--~~~-~~el~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aD   98 (340)
                      ++||+|||| |++ .+.  +..|+.  .++ ++||+|+|+++  ++. +.++.+..  ...++..   ++|++++++|||
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~~~v~~---t~d~~~al~~AD   75 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVLI---SDTFEGAVVDAK   75 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEEE---CSSHHHHHTTCS
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCCeEEEE---eCCHHHHhCCCC
Confidence            579999998 876 332  334555  566 89999999987  222 45554421  1145554   367779999999


Q ss_pred             EEEEcCCCCCCCCCCHH--------------------HHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 019519           99 VVIIPAGVPRKPGMTRD--------------------DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (340)
Q Consensus        99 iVi~~ag~~~~~g~~r~--------------------~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~  158 (340)
                      |||+++|.+++++++|.                    .++.+|+++++++++.|+++| |||+|++|||+|++|+++   
T Consensus        76 ~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~---  151 (417)
T 1up7_A           76 YVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFV---  151 (417)
T ss_dssp             EEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHH---
T ss_pred             EEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHH---
Confidence            99999999887776663                    346899999999999999999 999999999999999987   


Q ss_pred             HHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE-----------ecCCCccccccccC---CCCC----
Q 019519          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-----------GHAGITILPLFSQA---TPKA----  220 (340)
Q Consensus       159 ~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G-----------~hg~~~~vp~~s~~---~v~~----  220 (340)
                      ++.   .|++||||+|+.. .|+++.+|+.+|+++++|+++++|           +||+ +++|.||..   ++++    
T Consensus       152 ~k~---~p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~  226 (417)
T 1up7_A          152 RNY---LEYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDE  226 (417)
T ss_dssp             HHT---TCCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTT
T ss_pred             HHh---CCCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCC
Confidence            554   3677999998654 499999999999999999999999           9998 899999985   3322    


Q ss_pred             CCC---------------------hHHHHHH---------HHHHhcchhhhh--------hhhcCCCCccchHHHHHHHH
Q 019519          221 NLA---------------------DEDIKAL---------TKRTQDGGTEVV--------EAKAGKGSATLSMAYAGAIF  262 (340)
Q Consensus       221 ~~~---------------------~~~~~~l---------~~~v~~~~~~i~--------~~~~~kg~~~~s~A~a~~~l  262 (340)
                      ++.                     ++.++++         .+++++.+++++        ++ .+||+++|  |.+++++
T Consensus       227 ~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l-~~kg~t~~--~~~a~~i  303 (417)
T 1up7_A          227 DFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEEL-TKRGGSMY--STAAAHL  303 (417)
T ss_dssp             SCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGG-GGSTTTTH--HHHHHHH
T ss_pred             chHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhh-hhcCCcHH--HHHHHHH
Confidence            231                     2333444         356666678887        22 24577755  6899999


Q ss_pred             HHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019519          263 ADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK  336 (340)
Q Consensus       263 i~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~  336 (340)
                      ++||++|++   .+++++. ++|.|   |+|+++|+||+||++|++++... +||++|+++++.++...+..++.+++
T Consensus       304 i~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~~-~L~~~e~~~l~~~~~~e~l~veA~~~  377 (417)
T 1up7_A          304 IRDLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQG-KGDHFALSFIHAVKMYERLTIEAYLK  377 (417)
T ss_dssp             HHHHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCC-CCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCC---eEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999864   5788874 78876   59999999999999999999876 99999999999999999988887754

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.1e-42  Score=342.14  Aligned_cols=292  Identities=14%  Similarity=0.141  Sum_probs=225.8

Q ss_pred             CCeEEEEcCCCCh-HHHHHHHHHh--CCC-cceEEEEeCCC--cHHH-HHHHh-----cCCCCceEEEEecCCccccccC
Q 019519           28 DRKVAVLGAAGGI-GQPLALLMKL--NPL-VSRLALYDIAN--TPGV-AADVG-----HINTRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        28 ~~KI~IiGaaG~V-G~~~a~~l~~--~~~-~~el~L~D~~~--~~~~-~~dl~-----~~~~~~~v~~~~~~~d~~~al~   95 (340)
                      ++||+|||| |++ |..++..|+.  .++ .+||+|+|+++  .+.. ..|+.     +...+.++..+   +|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t---~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLT---LDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEE---SCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEe---CCHHHHhC
Confidence            479999998 888 7777777776  556 78999999987  3211 12222     22334566653   67779999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHH--------------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 019519           96 DSDVVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  155 (340)
                      |||+||+++|.++++|++|.+                    ++.+|+++++++++.|+++||+||+|++|||+|++|+++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~  162 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  162 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            999999999998888777763                    489999999999999999999999999999999999987


Q ss_pred             HHHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE-----------ecCCCccccccccCCCC-----
Q 019519          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-----------GHAGITILPLFSQATPK-----  219 (340)
Q Consensus       156 ~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G-----------~hg~~~~vp~~s~~~v~-----  219 (340)
                         ++.+   |++||||+|+.. .|+++.+|+.+|+++++|+++++|           +||+ +++|.|+.....     
T Consensus       163 ---~k~~---p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          163 ---LRYT---KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             ---HHHC---CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC----
T ss_pred             ---HHhC---CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhcccc
Confidence               5653   677999998765 499999999999999999999999           9998 899999874321     


Q ss_pred             --------CCCC---------------------hHHH-------------HHHHHHHhcchhhhh-----hhhc--CCCC
Q 019519          220 --------ANLA---------------------DEDI-------------KALTKRTQDGGTEVV-----EAKA--GKGS  250 (340)
Q Consensus       220 --------~~~~---------------------~~~~-------------~~l~~~v~~~~~~i~-----~~~~--~kg~  250 (340)
                              .++.                     ++.+             .++.+++++.+++++     ..+.  -.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                    0121                     1211             134556677777887     3220  0012


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHH
Q 019519          251 ATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE  326 (340)
Q Consensus       251 ~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  326 (340)
                      +.+++|.+++++++||++|++   .+++++. ++|.|   |+|+++|+||+||++|++++... +|+++|+++++.++..
T Consensus       315 ~~~~~~~~a~~ii~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~-~L~~~e~~l~~~~~~~  390 (450)
T 1s6y_A          315 GGAYYSDAACSLISSIYNDKR---DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVG-DLPVAVRGLVQQIKSF  390 (450)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCC---CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcCCC---eEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecC-CCCHHHHHHHHHHHHH
Confidence            334666999999999999865   4788864 78876   68999999999999999999876 9999999999998877


Q ss_pred             HHHHHHHHh
Q 019519          327 LKASIEKGV  335 (340)
Q Consensus       327 l~~~~~~~~  335 (340)
                      =+-.++.++
T Consensus       391 e~l~veAa~  399 (450)
T 1s6y_A          391 ERVAAEAAV  399 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=2.7e-41  Score=319.06  Aligned_cols=291  Identities=27%  Similarity=0.446  Sum_probs=249.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC---CceEEEEecCCccccccCCCCEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      ++|||+|||| |.+|++++..|+..+++++|+|+|+++  .++.++|+.+...   ..++...   +| ++++++||+||
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~-~~~~~~aD~Vi   80 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS---DD-PEICRDADMVV   80 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE---SC-GGGGTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC---CC-HHHhCCCCEEE
Confidence            4589999998 999999999999988878999999986  3445677665431   2344432   34 37899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchhHHH
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld~~R  180 (340)
                      ++++.|+++|++|.+++.+|+++++++++.+++++|++++++++||++.+++++   ++.++ +|+++|+|. |.+++.|
T Consensus        81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~---~~~~~-~~~~~vig~~~~l~~~r  156 (319)
T 1lld_A           81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA---QKLTG-LPENQIFGSGTNLDSAR  156 (319)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHHHT-CCTTSEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH---HHhcC-CCHHHEeeccccHhHHH
Confidence            999999999999999999999999999999999999999999999999999886   55667 999999998 8999999


Q ss_pred             HHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C------------CChHHHHHHHHHHhcchhhhhhhhcC
Q 019519          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------------LADEDIKALTKRTQDGGTEVVEAKAG  247 (340)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------------~~~~~~~~l~~~v~~~~~~i~~~~~~  247 (340)
                      ++..+++.+++++.+++.+++|+|++ +++|.|++..+++ +            .+++.++++.+.+++.+.+|++   .
T Consensus       157 ~~~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~---~  232 (319)
T 1lld_A          157 LRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---G  232 (319)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHT---S
T ss_pred             HHHHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhh---C
Confidence            99999999999999999999999998 8999999987642 1            1233477888888988999988   4


Q ss_pred             CCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHH
Q 019519          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKP  325 (340)
Q Consensus       248 kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~  325 (340)
                      +|.+.+++|.+.++++++|+++.+   .+++++ +++|.| ..+.++|+||.++++|+++++.+ +|+++|+++|++|++
T Consensus       233 ~G~~~~~~a~~~~sm~~di~~~~~---~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~~-~l~~~e~~~l~~s~~  308 (319)
T 1lld_A          233 KGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAE  308 (319)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHH
Confidence            578889999999999999998854   456675 678887 67899999999999999999887 999999999999999


Q ss_pred             HHHHHHHHH
Q 019519          326 ELKASIEKG  334 (340)
Q Consensus       326 ~l~~~~~~~  334 (340)
                      .|++.+++.
T Consensus       309 ~l~~~~~~~  317 (319)
T 1lld_A          309 TLKETAAQF  317 (319)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999998753

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.3e-41  Score=335.99  Aligned_cols=292  Identities=15%  Similarity=0.164  Sum_probs=219.6

Q ss_pred             CCCeEEEEcCCCCh-HHHHHHHHHhC--CC-cceEEEEeCCC--cHHHHHHHhcC-----CCCceEEEEecCCccccccC
Q 019519           27 PDRKVAVLGAAGGI-GQPLALLMKLN--PL-VSRLALYDIAN--TPGVAADVGHI-----NTRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~V-G~~~a~~l~~~--~~-~~el~L~D~~~--~~~~~~dl~~~-----~~~~~v~~~~~~~d~~~al~   95 (340)
                      +++||+|||| |++ |..++..|+..  ++ ..||+|+|+++  +++ ..|+.+.     ..+.++..+   +|++++++
T Consensus        27 ~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~~I~~t---~D~~eal~  101 (472)
T 1u8x_X           27 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDIEFAAT---TDPEEAFT  101 (472)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTSEEEEE---SCHHHHHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCCEEEEE---CCHHHHHc
Confidence            3469999998 888 55577777776  66 78999999987  233 2344332     235567663   57789999


Q ss_pred             CCCEEEEcCCCCCCCCCCH--------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 019519           96 DSDVVIIPAGVPRKPGMTR--------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  155 (340)
                      |||+||+++|.+++++++|                    .+++.+|+++++++++.|+++||+||+|++|||+|++|+++
T Consensus       102 ~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~  181 (472)
T 1u8x_X          102 DVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT  181 (472)
T ss_dssp             SCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH
T ss_pred             CCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9999999999987777666                    55589999999999999999999999999999999999987


Q ss_pred             HHHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCC-CCCceeEEE-----------e-cCCCccccccccCCC--C-
Q 019519          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG-----------G-HAGITILPLFSQATP--K-  219 (340)
Q Consensus       156 ~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~-~~v~~~v~G-----------~-hg~~~~vp~~s~~~v--~-  219 (340)
                         ++.+   |++||||+|+.. .|+++.+|+.+|+++ ++|+++++|           + ||+ +++|.|+...+  + 
T Consensus       182 ---~k~~---p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~~~~~g~  253 (472)
T 1u8x_X          182 ---RRLR---PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEHVSQYGY  253 (472)
T ss_dssp             ---HHHS---TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHHHHHHSS
T ss_pred             ---HHhC---CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHHHHhcCC
Confidence               5653   678999998665 499999999999997 999999999           8 998 89999987431  0 


Q ss_pred             ----------CCCChHHH------------------------HHHHHH----------Hhc-chhhhhhhhc-C--CC--
Q 019519          220 ----------ANLADEDI------------------------KALTKR----------TQD-GGTEVVEAKA-G--KG--  249 (340)
Q Consensus       220 ----------~~~~~~~~------------------------~~l~~~----------v~~-~~~~i~~~~~-~--kg--  249 (340)
                                .++..+.+                        +++.+.          +++ ...++.+... +  ++  
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~  333 (472)
T 1u8x_X          254 IPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSS  333 (472)
T ss_dssp             CCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSC
T ss_pred             CccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCc
Confidence                      01110100                        111111          111 2222222110 2  34  


Q ss_pred             -Cccc---hHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHH
Q 019519          250 -SATL---SMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (340)
Q Consensus       250 -~~~~---s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~  321 (340)
                       .+.+   ++|.+++++++||++|++   .++++++ ++|.|   |+|+++|+||+||++|++++... +|+++|+++++
T Consensus       334 ~~~~~~~~~~~~~a~~ii~AI~~d~~---~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~-~Lp~~~~~l~~  409 (472)
T 1u8x_X          334 ENSEIKIDDHASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVG-TIPQFQKGLME  409 (472)
T ss_dssp             CSCSSCCCTTTHHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHhcCCC---eEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecC-CCCHHHHHHHH
Confidence             4444   899999999999999864   5788864 78876   68999999999999999999876 99999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 019519          322 KLKPELKASIEKGV  335 (340)
Q Consensus       322 ~s~~~l~~~~~~~~  335 (340)
                      .-...=+-.++.++
T Consensus       410 ~~~~~e~l~veAa~  423 (472)
T 1u8x_X          410 QQVSVEKLTVEAWA  423 (472)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            86655554555443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=100.00  E-value=5.4e-33  Score=272.34  Aligned_cols=292  Identities=20%  Similarity=0.248  Sum_probs=196.5

Q ss_pred             CCCCeEEEEcCCCChH--HHHHHHHHhCC-CcceEEEEeCCCc--H--HHHHHHhcCCCCceEEEEecCCccccccCCCC
Q 019519           26 VPDRKVAVLGAAGGIG--QPLALLMKLNP-LVSRLALYDIANT--P--GVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG--~~~a~~l~~~~-~~~el~L~D~~~~--~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aD   98 (340)
                      |+++||+|||| |++|  ..++..|+... +..||+|+|+++.  +  ....+.... ...+++.   ++|+++|++|||
T Consensus         3 m~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~-~~~~I~~---TtD~~eAl~dAD   77 (450)
T 3fef_A            3 LDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN-GRWRYEA---VSTLKKALSAAD   77 (450)
T ss_dssp             CCCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT-SCEEEEE---ESSHHHHHTTCS
T ss_pred             CCCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc-cCCeEEE---ECCHHHHhcCCC
Confidence            45679999998 9985  56777776543 3359999999861  1  111221111 2345554   368889999999


Q ss_pred             EEEEcCC------------CCCCCCCCH----------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 019519           99 VVIIPAG------------VPRKPGMTR----------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (340)
Q Consensus        99 iVi~~ag------------~~~~~g~~r----------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~  156 (340)
                      |||+++.            .|+|+|+.|          .....+|+++++++++.|+++||+||+|++|||+|++|+++ 
T Consensus        78 fVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~-  156 (450)
T 3fef_A           78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL-  156 (450)
T ss_dssp             EEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH-
T ss_pred             EEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH-
Confidence            9999985            588888743          35667999999999999999999999999999999999987 


Q ss_pred             HHHHHhCCCCCCceEeccchhHHHHHHHHHHHc----C---CCCCCCceeEEE-ecCC---------Ccccccccc----
Q 019519          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA----N---VNVAEVNVPVVG-GHAG---------ITILPLFSQ----  215 (340)
Q Consensus       157 ~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l----~---v~~~~v~~~v~G-~hg~---------~~~vp~~s~----  215 (340)
                        ++.   +|+.||||+|+.. .++++.+|+.+    |   +++++|+..++| ||..         .+.+|.+..    
T Consensus       157 --~k~---~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~  230 (450)
T 3fef_A          157 --YKV---FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAH  230 (450)
T ss_dssp             --HHH---CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETTEEEEEEEEETTEEHHHHHHHHHHH
T ss_pred             --HHH---CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecCeEeEEEEEECCEEChHHHHHHHHh
Confidence              554   6889999999876 58999999999    5   679999999999 6633         123331100    


Q ss_pred             ---C-------CCC-CCCC--hHHHHHHHHHH----------------------------------------hcchhhhh
Q 019519          216 ---A-------TPK-ANLA--DEDIKALTKRT----------------------------------------QDGGTEVV  242 (340)
Q Consensus       216 ---~-------~v~-~~~~--~~~~~~l~~~v----------------------------------------~~~~~~i~  242 (340)
                         .       ... ..+.  ....-++.+..                                        .+.-.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  310 (450)
T 3fef_A          231 YGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETE  310 (450)
T ss_dssp             HTTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHHHHHH
Confidence               0       000 0000  00000000000                                        00000000


Q ss_pred             hhhcC-CC--CccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHH
Q 019519          243 EAKAG-KG--SATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDF  315 (340)
Q Consensus       243 ~~~~~-kg--~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~  315 (340)
                      +...+ +.  ...+  +.+++++++||++|++   .++++++ ++|.|   |+|+++|+||++|++|+.++.. ++||++
T Consensus       311 ~~~~~~~~~~~~~~--~e~~~~ii~aI~~d~~---~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~-g~Lp~~  384 (450)
T 3fef_A          311 RLIVQQRGVAEKAS--GEEGVNIIAALLGLGE---LVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILS-GALPKG  384 (450)
T ss_dssp             HHHHTTCCCCCSCC--SCCHHHHHHHHTTSCC---EEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCC-CCCCHH
T ss_pred             HHhcCCcCcCcCcc--HHHHHHHHHHHHcCCC---eEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceeccc-CCCCHH
Confidence            00000 00  0011  2557999999999864   5778865 78876   6899999999999999999855 599999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 019519          316 EQEGLEKLKPELKASIEKGV  335 (340)
Q Consensus       316 E~~~l~~s~~~l~~~~~~~~  335 (340)
                      ++++++.-...-+-.++.++
T Consensus       385 ~~~l~~~~~~~e~l~veAa~  404 (450)
T 3fef_A          385 VEMLAARHISNQEAVADAGL  404 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999876555444455443

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.98  E-value=1.6e-31  Score=263.78  Aligned_cols=291  Identities=19%  Similarity=0.164  Sum_probs=193.0

Q ss_pred             CCCCeEEEEcCCCChHHHH--HHHHHhC-CC-cceEEEEeCCC--cHHHHHHHh-----cCCCCceEEEEecCCcccccc
Q 019519           26 VPDRKVAVLGAAGGIGQPL--ALLMKLN-PL-VSRLALYDIAN--TPGVAADVG-----HINTRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~--a~~l~~~-~~-~~el~L~D~~~--~~~~~~dl~-----~~~~~~~v~~~~~~~d~~~al   94 (340)
                      |+++||+|||| |+||++.  +..|+.. ++ ..||+|+|+++  +++ +.++.     +...+.++..+   +|+++++
T Consensus         1 m~~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~t---tD~~eal   75 (480)
T 1obb_A            1 MPSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEKT---MNLDDVI   75 (480)
T ss_dssp             -CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEEE---SCHHHHH
T ss_pred             CCCCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEEE---CCHHHHh
Confidence            45689999998 9986555  5577643 33 57999999987  222 22221     22234567653   6777899


Q ss_pred             CCCCEEEEcCCC------------CCCCCCCH--H------------HHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGV------------PRKPGMTR--D------------DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~------------~~~~g~~r--~------------~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      +|||+||+++|.            |+|+|+.|  .            .++.+|+++++++++.|+++||+||+|++|||+
T Consensus        76 ~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPv  155 (480)
T 1obb_A           76 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPI  155 (480)
T ss_dssp             TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCH
T ss_pred             CCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence            999999999986            55666544  3            347899999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE-ecCC---------Cccccc------
Q 019519          149 NSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAG---------ITILPL------  212 (340)
Q Consensus       149 d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp~------  212 (340)
                      |++|+++   ++    +|++||||+|+++. ++++.+ +.+|+++++|+++++| +|..         ++.+|.      
T Consensus       156 di~t~~~---~k----~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~  226 (480)
T 1obb_A          156 FEGTTLV---TR----TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIE  226 (480)
T ss_dssp             HHHHHHH---HH----HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHH
T ss_pred             HHHHHHH---HH----CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecchhhhhheeeCCeEcHHHHHHHHH
Confidence            9999987   55    67899999986544 478999 9999999999999999 3322         112221      


Q ss_pred             -----------ccc--CCC--------C---C-------CCC------h------------------HH----HHHHHHH
Q 019519          213 -----------FSQ--ATP--------K---A-------NLA------D------------------ED----IKALTKR  233 (340)
Q Consensus       213 -----------~s~--~~v--------~---~-------~~~------~------------------~~----~~~l~~~  233 (340)
                                 |+.  ..+        +   .       +|-      .                  .+    ..+....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~  306 (480)
T 1obb_A          227 EKSKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEI  306 (480)
T ss_dssp             HTGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             ccCccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHH
Confidence                       221  000        0   0       111      1                  00    0011111


Q ss_pred             HhcchhhhhhhhcCCC--------Cccc----------------hHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC--
Q 019519          234 TQDGGTEVVEAKAGKG--------SATL----------------SMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--  286 (340)
Q Consensus       234 v~~~~~~i~~~~~~kg--------~~~~----------------s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~--  286 (340)
                      +.+.-+++.+...-+.        .++|                ..+..++++++||++|++   .++.+++ ++|.+  
T Consensus       307 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~  383 (480)
T 1obb_A          307 TKKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNK---ARFVVNIPNKGIIHG  383 (480)
T ss_dssp             HHHHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHCCC---EEEEEEEECTTSSTT
T ss_pred             HHHHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhCCC---eEEEEEeeCCceeCC
Confidence            1111111211100000        0111                111567999999999875   3555654 67865  


Q ss_pred             -CCccEEEEeEEEcCCceEEEecCCC-CCHHHHHH-HHHHHHHHHHHHHHH
Q 019519          287 -TELPFFASKVRLGKNGVEEVLGLGP-LSDFEQEG-LEKLKPELKASIEKG  334 (340)
Q Consensus       287 -~~~~~~svP~~ig~~Gv~~i~~~~~-L~~~E~~~-l~~s~~~l~~~~~~~  334 (340)
                       |+|+++++||+++++|+.++ ..++ ||+..+++ ++.-...-+-.++.+
T Consensus       384 lp~d~vVEvp~~v~~~G~~p~-~~g~~lP~~~~~l~~~~~~~~e~l~veA~  433 (480)
T 1obb_A          384 IDDDVVVEVPALVDKNGIHPE-KIEPPLPDRVVKYYLRPRIMRMEMALEAF  433 (480)
T ss_dssp             SCTTSEEEEEEEEETTEEEEC-CCSSCCCHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEEEcCCCCEee-ccCCCCCHHHHhHHHHHHHHHHHHHHHHH
Confidence             89999999999999999997 4568 99999999 776555444444444

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.98  E-value=1.4e-31  Score=265.14  Aligned_cols=273  Identities=16%  Similarity=0.137  Sum_probs=183.0

Q ss_pred             CeEEEEcCCCChHHHH--HHHHHhCC----CcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCC
Q 019519           29 RKVAVLGAAGGIGQPL--ALLMKLNP----LVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~--a~~l~~~~----~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~   96 (340)
                      |||+|||| |++|++.  ...++...    ..+||+|+|+++  +++...++.+..    .+.++..+   +|+++|++|
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t---~d~~eAl~g   76 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKT---ESLDEAIEG   76 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEE---SCHHHHHTT
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEe---CCHHHHhCC
Confidence            69999998 9998764  33455433    246999999997  455555555432    34566653   688999999


Q ss_pred             CCEEEEcCCC-------------------CCCCCCCHHHHH---------------HHHHHHHHHHHHHHHHhCCCcEEE
Q 019519           97 SDVVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVKDLCSAIAKYCPNAIVN  142 (340)
Q Consensus        97 aDiVi~~ag~-------------------~~~~g~~r~~~~---------------~~N~~i~~~i~~~i~~~~p~a~vi  142 (340)
                      |||||+++|.                   |+|+|++|.++.               .+|++++.++++.|+++|||||+|
T Consensus        77 AD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~i  156 (477)
T 3u95_A           77 ADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLM  156 (477)
T ss_dssp             CSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEE
Confidence            9999999874                   346666554432               369999999999999999999999


Q ss_pred             EecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEEecCC----------Cccccc
Q 019519          143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPL  212 (340)
Q Consensus       143 v~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~  212 (340)
                      |+|||++++|+++   ++++|    .|++|+|+....  ...+++.||+++++|+..+.|-||.          ++.+|.
T Consensus       157 n~tNP~~i~t~a~---~~~~~----~k~vGlC~~~~~--~~~~~~~Lg~~~~~v~~~~~GlNH~~w~~~~~~~G~D~~P~  227 (477)
T 3u95_A          157 QTANPVFEITQAV---RRWTG----ANIIGFCHGVAG--VYEVFERLGLDPEEVDWQVAGVNHGIWLNRFRYRGKDAYPL  227 (477)
T ss_dssp             ECSSCHHHHHHHH---HHHHC----CCEEEECCGGGH--HHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHH
T ss_pred             EecChHHHHHHHH---HHhCC----CCeEEECCCHHH--HHHHHHHhCCCHHHcEEEEeecCCCeeeeeeeecCCcccHH
Confidence            9999999999987   67666    689999975543  3456778999999999999996654          122332


Q ss_pred             ccc-----------CCC----------------C---------C-C----CChH----------------H---HHHHH-
Q 019519          213 FSQ-----------ATP----------------K---------A-N----LADE----------------D---IKALT-  231 (340)
Q Consensus       213 ~s~-----------~~v----------------~---------~-~----~~~~----------------~---~~~l~-  231 (340)
                      +..           ...                +         + .    +..+                +   +.+.. 
T Consensus       228 l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  307 (477)
T 3u95_A          228 LDEWIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFHEHLR  307 (477)
T ss_dssp             HHHHHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHHHHHH
Confidence            100           000                0         0 0    0000                0   00000 


Q ss_pred             ---HHHhcchhhhhh--------hh--cCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEE
Q 019519          232 ---KRTQDGGTEVVE--------AK--AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFAS  294 (340)
Q Consensus       232 ---~~v~~~~~~i~~--------~~--~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~sv  294 (340)
                         +++.+...++.+        ..  ...++..++  .+++++++||++|++   .++.+++ ++|.+   |+|.+++|
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~a~~ii~AI~~~~~---~~~~vNv~N~G~I~nLP~DavVEV  382 (477)
T 3u95_A          308 RARERLIKLAEEVQENPHLKITEKHPEIFPKGRLSG--EQHIPFINAIANNKR---VRLFLNVENQGALKDFPDDLVMEL  382 (477)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCCC--CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCTTSEEEE
T ss_pred             HHHHHHHHHHHHHhhccchhcccccchhcccccccH--HHHHHHHHHHhCCCC---eEEEEEeecCcccCCCCCCcEEEE
Confidence               000000001100        00  001223344  567899999999975   3555654 67875   88999999


Q ss_pred             eEEEcCCceEEEecCCCCCHHHHHHH
Q 019519          295 KVRLGKNGVEEVLGLGPLSDFEQEGL  320 (340)
Q Consensus       295 P~~ig~~Gv~~i~~~~~L~~~E~~~l  320 (340)
                      ||+|+++|+.++ .++++++...+++
T Consensus       383 pc~Vd~~Gi~P~-~vg~~p~~~~~l~  407 (477)
T 3u95_A          383 PVWVDSSGIHRE-KVEPDLTHRIKIF  407 (477)
T ss_dssp             EEEEETTEEEEC-CCCSCCCHHHHHH
T ss_pred             EEEEcCCCcccc-cCCCCCHHHHHHH
Confidence            999999999996 5668887777665

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.87  E-value=4.9e-09  Score=98.31  Aligned_cols=118  Identities=15%  Similarity=0.204  Sum_probs=87.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c--HHH---H---HHHhcCC-C---------CceEEEEecCCc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV---A---ADVGHIN-T---------RSEVAGYMGNDQ   89 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~--~~~---~---~dl~~~~-~---------~~~v~~~~~~~d   89 (340)
                      .||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  .+.   .   ..+.... .         ..++..+   +|
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~---~~   80 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC---TN   80 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE---CC
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc---cc
Confidence            59999998 9999999999999998  999999986 1  111   1   1111111 0         1245543   57


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-cHHHHHHHHHHhCCCCC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-~t~~~~~~~~~sg~~~~  167 (340)
                      +.+++++||+||.++              .+|+++.+++..+++++++ ++++  .||.+.+ ++.++    ...  -.|
T Consensus        81 l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~is~ia----~~~--~~p  138 (319)
T 3ado_A           81 LAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLLPSKLF----TGL--AHV  138 (319)
T ss_dssp             HHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSCCHHHHH----TTC--TTG
T ss_pred             hHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhccchhhh----hhc--cCC
Confidence            888999999999986              3789999999999999995 6754  9999985 44432    222  457


Q ss_pred             CceEecc
Q 019519          168 KKLFGVT  174 (340)
Q Consensus       168 ~kviG~~  174 (340)
                      +|++|++
T Consensus       139 ~r~ig~H  145 (319)
T 3ado_A          139 KQCIVAH  145 (319)
T ss_dssp             GGEEEEE
T ss_pred             CcEEEec
Confidence            8999986

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.80  E-value=3.3e-08  Score=102.45  Aligned_cols=137  Identities=15%  Similarity=0.233  Sum_probs=94.1

Q ss_pred             hhhhccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--c-HHH---HHHH-------h--
Q 019519            9 VKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PGV---AADV-------G--   73 (340)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~-~~~---~~dl-------~--   73 (340)
                      .|+...+.+..+.....++..||+|+|| |.+|+.+|..++..|+  +|+|+|+++  . .+.   ...+       .  
T Consensus       297 ~~k~~~~~~~~~~~~~~~~i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~  373 (742)
T 3zwc_A          297 ANKWSTPSGASWKTASAQPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQN  373 (742)
T ss_dssp             TTSCBCTTCCBTTTCCCCCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccccccCcccccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhcccc
Confidence            3444444443333333345579999998 9999999999999998  999999986  1 111   0011       0  


Q ss_pred             cC-CCCceEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-
Q 019519           74 HI-NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-  150 (340)
Q Consensus        74 ~~-~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-  150 (340)
                      .. ....++...   +|+ +++++||+||.++              .+|+++.+++.++++++++ ++++  .||.+.+ 
T Consensus       374 ~~~~~~~~~~~~---~~~-~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~  433 (742)
T 3zwc_A          374 GQASAKPKLRFS---SST-KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALN  433 (742)
T ss_dssp             TCCCCCCCEEEE---SCG-GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC
T ss_pred             chhhhhhhhccc---CcH-HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCC
Confidence            11 123355543   454 7799999999986              3789999999999999994 6754  9999885 


Q ss_pred             cHHHHHHHHHHhCCCCCCceEecc
Q 019519          151 TVPIAAEVFKKAGTYNEKKLFGVT  174 (340)
Q Consensus       151 ~t~~~~~~~~~sg~~~~~kviG~~  174 (340)
                      ++.++    ..+  -.|+||+|++
T Consensus       434 i~~ia----~~~--~~p~r~ig~H  451 (742)
T 3zwc_A          434 VDDIA----SST--DRPQLVIGTH  451 (742)
T ss_dssp             HHHHH----TTS--SCGGGEEEEE
T ss_pred             hHHHH----hhc--CCcccccccc
Confidence            55443    222  3578999986

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.69  E-value=2e-07  Score=91.52  Aligned_cols=139  Identities=14%  Similarity=0.208  Sum_probs=91.5

Q ss_pred             hhhhhhccCccccCCCCCC-CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHH-----H-HHhcCC---
Q 019519            7 RSVKTLAKPAGARGYSSES-VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-----A-DVGHIN---   76 (340)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~-~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~-----~-dl~~~~---   76 (340)
                      |.+++.+-|.|.....+.. ++.+||+|||+ |.+|+.+|..++..++  +|+++|+++.++..     + .+....   
T Consensus        32 ~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~  108 (460)
T 3k6j_A           32 SLAGQWSLPNDRGDHTNSEAYDVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLN  108 (460)
T ss_dssp             CCTTSCBCSTTSCBTTSCCCCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HhhccccCCCCccccccCCcccCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCC
Confidence            4566677776654332222 44579999998 9999999999999998  99999998632210     1 111111   


Q ss_pred             ------CCceEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519           77 ------TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus        77 ------~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                            ...++...   +|+ +++++||+||.+.  |            ++..+.+++.+.+.+++ |++++  +||.+.
T Consensus       109 ~~~~~~~~~~i~~t---~dl-~al~~aDlVIeAV--p------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSs  168 (460)
T 3k6j_A          109 DKRIEKINANLKIT---SDF-HKLSNCDLIVESV--I------------EDMKLKKELFANLENICKSTCIF--GTNTSS  168 (460)
T ss_dssp             HHHHHHHHTTEEEE---SCG-GGCTTCSEEEECC--C------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSS
T ss_pred             HHHHHHHhcceEEe---CCH-HHHccCCEEEEcC--C------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCC
Confidence                  11246553   466 5799999999986  2            46778888888899888 46655  577665


Q ss_pred             c-cHHHHHHHHHHhCCCCCCceEecc
Q 019519          150 S-TVPIAAEVFKKAGTYNEKKLFGVT  174 (340)
Q Consensus       150 ~-~t~~~~~~~~~sg~~~~~kviG~~  174 (340)
                      + ++.++    ...  -.|++++|+.
T Consensus       169 l~i~~ia----~~~--~~p~r~iG~H  188 (460)
T 3k6j_A          169 LDLNEIS----SVL--RDPSNLVGIH  188 (460)
T ss_dssp             SCHHHHH----TTS--SSGGGEEEEE
T ss_pred             hhHHHHH----Hhc--cCCcceEEEE
Confidence            3 33332    222  2356788875

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.56  E-value=9.7e-07  Score=86.95  Aligned_cols=121  Identities=14%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--H-HHH--H-H---------HhcCCC-CceEEEEecCCc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GVA--A-D---------VGHINT-RSEVAGYMGNDQ   89 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~-~~~--~-d---------l~~~~~-~~~v~~~~~~~d   89 (340)
                      ++++||+|||+ |.+|+.++..++..++  +|+++|+++.  . +..  . .         +..... .......   +|
T Consensus        35 ~~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~---~~  108 (463)
T 1zcj_A           35 QPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS---SS  108 (463)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEE---SC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhc---CC
Confidence            44679999998 9999999999999888  9999999861  1 110  0 0         101010 1122332   45


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (340)
                      + +++++||+||++.  |            .+..+.+++.+.+..+++ ++++  +||.+.+-...+   ....  -.++
T Consensus       109 ~-~~~~~aDlVIeaV--p------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~~~~l---a~~~--~~~~  166 (463)
T 1zcj_A          109 T-KELSTVDLVVEAV--F------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDI---ASST--DRPQ  166 (463)
T ss_dssp             G-GGGTTCSEEEECC--C------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHH---HTTS--SCGG
T ss_pred             H-HHHCCCCEEEEcC--C------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcCHHHH---HHHh--cCCc
Confidence            5 6799999999986  2            356677778888888874 6655  467776543322   1222  2356


Q ss_pred             ceEecc
Q 019519          169 KLFGVT  174 (340)
Q Consensus       169 kviG~~  174 (340)
                      +++|++
T Consensus       167 ~~ig~h  172 (463)
T 1zcj_A          167 LVIGTH  172 (463)
T ss_dssp             GEEEEE
T ss_pred             ceEEee
Confidence            788874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.49  E-value=1.4e-06  Score=77.14  Aligned_cols=113  Identities=17%  Similarity=0.143  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ++.|||.|+||+|++|++++..|+..+.  +|++++.+.....  ++.+.....-+..... .++.+++.++|+||+++|
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~~~~~~~~Dl~-~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERGASDIVVANLE-EDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTTCSEEEECCTT-SCCGGGGTTCSEEEECCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCCCceEEEcccH-HHHHHHHcCCCEEEECCC
Confidence            5568999999999999999999999887  9999998763221  1221111001111111 355788999999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ....  ......+..|+.....+++.+++.... .+|++|.
T Consensus        94 ~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  131 (236)
T 3e8x_A           94 SGPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS  131 (236)
T ss_dssp             CCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CCCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            6532  345667778999999999999887644 4555554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.48  E-value=8.5e-07  Score=81.52  Aligned_cols=121  Identities=19%  Similarity=0.306  Sum_probs=78.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHh-----------cCC------CCceEEEEecC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG-----------HIN------TRSEVAGYMGN   87 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~-----------~~~------~~~~v~~~~~~   87 (340)
                      .++||+|||+ |.+|+.++..++..++  +|+++|+++.  ......+.           ...      ...++...   
T Consensus         3 ~~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~---   76 (283)
T 4e12_A            3 GITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS---   76 (283)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE---
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe---
Confidence            3569999998 9999999999999998  9999999861  11111110           000      00134432   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-cHHHHHHHHHHhCCC
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTY  165 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~-~t~~~~~~~~~sg~~  165 (340)
                      +|+.+++++||+||++..              .+.+..+++.+.+.+++ |++++  +||...+ ++.++    ...+  
T Consensus        77 ~~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~~~~~la----~~~~--  134 (283)
T 4e12_A           77 DDLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTLLPSDLV----GYTG--  134 (283)
T ss_dssp             SCHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHH----HHHS--
T ss_pred             CCHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhcC--
Confidence            567778999999999862              34567777778888887 46655  5555443 33332    2332  


Q ss_pred             CCCceEeccc
Q 019519          166 NEKKLFGVTT  175 (340)
Q Consensus       166 ~~~kviG~~~  175 (340)
                      .+.+++|+..
T Consensus       135 ~~~~~ig~h~  144 (283)
T 4e12_A          135 RGDKFLALHF  144 (283)
T ss_dssp             CGGGEEEEEE
T ss_pred             CCcceEEEcc
Confidence            3467888753

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.47  E-value=3.2e-07  Score=85.94  Aligned_cols=156  Identities=15%  Similarity=0.183  Sum_probs=95.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~a  104 (340)
                      .+++||.|+||+|++|++++..|+..++  +|+.+|.+...      .  .. ..+.... ...++.++++++|+||++|
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~------~--~~-~~~~~Dl~d~~~~~~~~~~~d~vih~A   85 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG------T--GG-EEVVGSLEDGQALSDAIMGVSAVLHLG   85 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS------S--CC-SEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC------C--Cc-cEEecCcCCHHHHHHHHhCCCEEEECC
Confidence            4668999999999999999999999887  89999987522      1  10 1111110 1123456789999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--------C-CCccHHHHHHHHHHhCCCCCCceEeccc
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--------P-VNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN--------P-~d~~t~~~~~~~~~sg~~~~~kviG~~~  175 (340)
                      +............+..|+.....+++.+.+.... .+|++|.        + ...+++       ..+ .++...+|.+.
T Consensus        86 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E-------~~~-~~~~~~Y~~sK  156 (347)
T 4id9_A           86 AFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPVTE-------DHP-LCPNSPYGLTK  156 (347)
T ss_dssp             CCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSBCT-------TSC-CCCCSHHHHHH
T ss_pred             cccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCcCC-------CCC-CCCCChHHHHH
Confidence            8654333334677889999999999999886544 4444443        1 111111       112 33444555554


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCce-eEE
Q 019519          176 LDVVRAKTFYAGKANVNVAEVNV-PVV  201 (340)
Q Consensus       176 ld~~R~~~~la~~l~v~~~~v~~-~v~  201 (340)
                      ....++...+++..+++..-++. .++
T Consensus       157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          157 LLGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHHhcCCceEEEccceEe
Confidence            44445555555666665554543 355

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.35  E-value=5.9e-06  Score=76.71  Aligned_cols=117  Identities=11%  Similarity=-0.017  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH--HHHHHhcCCCCceEEEE-e----cCCccccccCCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGY-M----GNDQLGQALEDSD   98 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~--~~~dl~~~~~~~~v~~~-~----~~~d~~~al~~aD   98 (340)
                      ++.++|.|+||+|++|++++..|+..++  +|+++|.+....  ....+.... ..++... .    ...++.++++++|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence            3457999999999999999999999887  899999764211  111111100 0123322 1    1234456678999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        99 iVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +||++|+.... +....+.+..|+.....+++.+.+......+|++|.
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            99999986532 245567788999999999999875333345665554

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.33  E-value=5.4e-06  Score=81.79  Aligned_cols=119  Identities=16%  Similarity=0.157  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCc--HHHHHHHhcCC--C----------------CceEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT--PGVAADVGHIN--T----------------RSEVAGY   84 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~--~~~~~dl~~~~--~----------------~~~v~~~   84 (340)
                      +++|||+|||+ |.+|..+|..|+.. |+. +|+++|+++.  .+.+..|....  .                ..++..+
T Consensus        16 ~~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t   93 (478)
T 3g79_A           16 GPIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT   93 (478)
T ss_dssp             CSCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe
Confidence            35689999998 99999999999988 753 8999999874  22333343311  1                2346653


Q ss_pred             ecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHH
Q 019519           85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPI  154 (340)
Q Consensus        85 ~~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~  154 (340)
                         +| .+++++||+||++.+.|...+.++    ..++..++..++.|.++. |+.+||.- |-|.+..-.+
T Consensus        94 ---td-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v  157 (478)
T 3g79_A           94 ---PD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGM  157 (478)
T ss_dssp             ---SC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTH
T ss_pred             ---Cc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHH
Confidence               45 588999999999987775443210    123344455555666655 44444432 5555543333

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.32  E-value=3.8e-06  Score=87.07  Aligned_cols=120  Identities=23%  Similarity=0.398  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHH--HH-Hh---cCC---------CCceEEEEecC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVA--AD-VG---HIN---------TRSEVAGYMGN   87 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~--~d-l~---~~~---------~~~~v~~~~~~   87 (340)
                      ++++||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+..  .+ +.   ...         ...+++..   
T Consensus       310 ~~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~---  383 (725)
T 2wtb_A          310 RKIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS---  383 (725)
T ss_dssp             CCCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE---
T ss_pred             ccCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe---
Confidence            34579999998 9999999999999988  9999999861   1110  01 11   000         12356653   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-cHHHHHHHHHHhCCC
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTY  165 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-~t~~~~~~~~~sg~~  165 (340)
                      +|+ +++++||+||++.  |            .+..+.+++...+.++++ ++++  +||...+ ++.++    ...  -
T Consensus       384 ~d~-~~~~~aDlVIeaV--p------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl~i~~la----~~~--~  440 (725)
T 2wtb_A          384 LDY-ESFRDVDMVIEAV--I------------ENISLKQQIFADLEKYCPQHCIL--ASNTSTIDLNKIG----ERT--K  440 (725)
T ss_dssp             SSS-GGGTTCSEEEECC--C------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHT----TTC--S
T ss_pred             CCH-HHHCCCCEEEEcC--c------------CCHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH----HHh--c
Confidence            465 6899999999986  2            456777788888888885 5543  7887664 33332    212  2


Q ss_pred             CCCceEecc
Q 019519          166 NEKKLFGVT  174 (340)
Q Consensus       166 ~~~kviG~~  174 (340)
                      .+++++|++
T Consensus       441 ~p~~~iG~h  449 (725)
T 2wtb_A          441 SQDRIVGAH  449 (725)
T ss_dssp             CTTTEEEEE
T ss_pred             CCCCEEEec
Confidence            346777764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.31  E-value=3.8e-06  Score=79.94  Aligned_cols=102  Identities=16%  Similarity=0.241  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC--------CCCceEEEEecCCccccccCCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------NTRSEVAGYMGNDQLGQALEDSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~--------~~~~~v~~~~~~~d~~~al~~aD   98 (340)
                      .+|||+|||+ |.+|.+++..|+..++  +|.++|.++.....+.-.+.        ..+.++..+   +|+.+++++||
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t---~d~~ea~~~aD  101 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY---CDLKASLEGVT  101 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE---SCHHHHHTTCC
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE---CCHHHHHhcCC
Confidence            3579999998 9999999999998887  89999987522111111111        112345553   56778899999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 019519           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (340)
Q Consensus        99 iVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (340)
                      +||++.  |              ...++++++.+..+. |+.+++.++|..+.
T Consensus       102 vVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~  138 (356)
T 3k96_A          102 DILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAK  138 (356)
T ss_dssp             EEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBT
T ss_pred             EEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCc
Confidence            999984  3              135677778888776 57888888887654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.30  E-value=3.8e-06  Score=78.55  Aligned_cols=137  Identities=12%  Similarity=0.022  Sum_probs=74.6

Q ss_pred             cchhhhhhhhhccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceE
Q 019519            2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV   81 (340)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v   81 (340)
                      -+|+-..-|-..+|.|-....+. ++++||.|+||+|++|++++..|+..+.  +|+++|.+..... ..+.+......+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~~~~~~~~   77 (343)
T 2b69_A            2 GSSHHHHHHSSGRENLYFQGHME-KDRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRK-RNVEHWIGHENF   77 (343)
T ss_dssp             --------------------------CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGTGGGTTCTTE
T ss_pred             Ccccccccccccccccccccccc-cCCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccch-hhhhhhccCCce
Confidence            44555555556677766655443 3568999999999999999999998887  8999997541000 011111111234


Q ss_pred             EEEecCCccccccCCCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           82 AGYMGNDQLGQALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        82 ~~~~~~~d~~~al~~aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ...... -...++.++|+||++|+.....  .......+..|+.....+++.+.+...  .+|++|
T Consensus        78 ~~~~~D-~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A           78 ELINHD-VVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             EEEECC-TTSCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             EEEeCc-cCChhhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            433221 1134578999999999864321  234456678899999999999988764  555554

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.30  E-value=1e-06  Score=82.41  Aligned_cols=170  Identities=14%  Similarity=0.088  Sum_probs=96.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC----CccccccCC--CCE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDV   99 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~al~~--aDi   99 (340)
                      +++|||.|+||+|++|++++..|+..+.-.+++.+|..........+........+......    .++.+++++  +|+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~  101 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV  101 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence            34689999999999999999999988743488888875411111122222212244443211    223455666  999


Q ss_pred             EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC--------CCccHHHHHHHHHHhCCCCCCc
Q 019519          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP--------VNSTVPIAAEVFKKAGTYNEKK  169 (340)
Q Consensus       100 Vi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP--------~d~~t~~~~~~~~~sg~~~~~k  169 (340)
                      ||++|+.....  .......+..|+.....+++.+.+.... .+|++|..        ...+++       ... ..+..
T Consensus       102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~~~~~E-------~~~-~~p~~  172 (346)
T 4egb_A          102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKTGRFTE-------ETP-LAPNS  172 (346)
T ss_dssp             EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSSCCBCT-------TSC-CCCCS
T ss_pred             EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcCCCcCC-------CCC-CCCCC
Confidence            99999864322  1234456788999999999999887654 34444421        111110       111 23334


Q ss_pred             eEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          170 LFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       170 viG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      .+|.+.....++...+++..|++..-++ ..++|..
T Consensus       173 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~  208 (346)
T 4egb_A          173 PYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPY  208 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcC
Confidence            5555544444555556666677655555 3566654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.29  E-value=3.9e-06  Score=83.01  Aligned_cols=120  Identities=21%  Similarity=0.334  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHH----HHhcCC----C--------CceEEEEecCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA----DVGHIN----T--------RSEVAGYMGND   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~----dl~~~~----~--------~~~v~~~~~~~   88 (340)
                      +.+||+|||+ |.+|+.++..++..|+  +|+++|+++.  .....    .+....    .        ..+++..   +
T Consensus         4 ~~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~---~   77 (483)
T 3mog_A            4 NVQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV---T   77 (483)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE---C
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe---C
Confidence            3569999998 9999999999999998  9999999861  11111    111111    0        1245553   4


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~  167 (340)
                      |+ +++++||+||.+.  |            .+..+.+++..++.++++ ++++  +||.+.+-...+   ....  -.+
T Consensus        78 ~~-~~~~~aDlVIeAV--p------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti~i~~i---a~~~--~~p  135 (483)
T 3mog_A           78 DI-HALAAADLVIEAA--S------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSISITAI---AAEI--KNP  135 (483)
T ss_dssp             CG-GGGGGCSEEEECC--C------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHH---TTTS--SSG
T ss_pred             CH-HHhcCCCEEEEcC--C------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCCCHHHH---HHHc--cCc
Confidence            55 5799999999985  2            356777888888888884 6644  567666433221   1222  135


Q ss_pred             CceEecc
Q 019519          168 KKLFGVT  174 (340)
Q Consensus       168 ~kviG~~  174 (340)
                      .+++|+.
T Consensus       136 ~~~ig~h  142 (483)
T 3mog_A          136 ERVAGLH  142 (483)
T ss_dssp             GGEEEEE
T ss_pred             cceEEee
Confidence            6777764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.29  E-value=3.8e-06  Score=82.36  Aligned_cols=110  Identities=19%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC--------------CceEEEEecCCcccccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--------------RSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~--------------~~~v~~~~~~~d~~~al   94 (340)
                      |||+|||+ |.+|..++..|+..++  +|+++|+++.+...+.-.....              ..++..+   +|+.+++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t---~d~~ea~   76 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG---TEIEQAV   76 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE---SCHHHHG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE---CCHHHHH
Confidence            79999998 9999999999999988  9999999862211111011100              2245553   5677789


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCc
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~  150 (340)
                      ++||+||++.+.|...+.      ..++..++++++.+.++. ++.+|+.. |-|.+.
T Consensus        77 ~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           77 PEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             GGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             hcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            999999999877754332      234455666666676665 34444433 334443

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.28  E-value=1.6e-06  Score=80.06  Aligned_cols=164  Identities=16%  Similarity=0.115  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      +|||.|+||+|++|++++..|+..+.  +|+.++.+.....   +....   -+.......++.++++++|+||++|+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~~---~~~~Dl~~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDYE---YRVSDYTLEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CCE---EEECCCCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCceE---EEEccccHHHHHHhhcCCCEEEEccccC
Confidence            36999999999999999999999887  9999998742111   22110   1111000134567889999999999865


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH-HHHHhCCCCCCceEeccchhHHHHHHHHH
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-VFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~-~~~~sg~~~~~kviG~~~ld~~R~~~~la  186 (340)
                      ...  ...+.+..|+...+.+++.+.+.+.+- +|.+|.. .+...--.. +-..+. ..+...+|.+.....++...++
T Consensus        74 ~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r-~v~~SS~-~vyg~~~~~~~~E~~~-~~p~~~Y~~sK~~~E~~~~~~~  148 (311)
T 3m2p_A           74 GSQ--GKISEFHDNEILTQNLYDACYENNISN-IVYASTI-SAYSDETSLPWNEKEL-PLPDLMYGVSKLACEHIGNIYS  148 (311)
T ss_dssp             CSS--SCGGGTHHHHHHHHHHHHHHHHTTCCE-EEEEEEG-GGCCCGGGCSBCTTSC-CCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEccH-HHhCCCCCCCCCCCCC-CCCCchhHHHHHHHHHHHHHHH
Confidence            332  334456789999999999999876553 4444321 110000000 000111 2233445554444445555566


Q ss_pred             HHcCCCCCCCc-eeEEEec
Q 019519          187 GKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       187 ~~l~v~~~~v~-~~v~G~h  204 (340)
                      +..|++..-++ ..++|..
T Consensus       149 ~~~g~~~~ilRp~~v~G~~  167 (311)
T 3m2p_A          149 RKKGLCIKNLRFAHLYGFN  167 (311)
T ss_dssp             HHSCCEEEEEEECEEECSC
T ss_pred             HHcCCCEEEEeeCceeCcC
Confidence            66676655554 3466654

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.27  E-value=3.5e-06  Score=83.36  Aligned_cols=121  Identities=19%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC---------------CceEEEEecCCccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---------------RSEVAGYMGNDQLG   91 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~---------------~~~v~~~~~~~d~~   91 (340)
                      ++|||+|||+ |.||..++..|+..+...+|+++|+++.+.  ..+.....               ...+..+   +|+.
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t---~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAKI--AEWNSDKLPIYEPGLDEIVFAARGRNLFFS---SDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHHH--HHHTSSSCSSCCTTHHHHHHHHBTTTEEEE---SCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHHH--HHHHCCCCCcCCCCHHHHHHHhhcCCEEEE---CCHH
Confidence            3579999998 999999999998873223999999875222  22222110               1135443   4666


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEE-ecCCCCccHHH
Q 019519           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNM-ISNPVNSTVPI  154 (340)
Q Consensus        92 ~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv-~tNP~d~~t~~  154 (340)
                      +++++||+||++.+.|.+.+.++.+ -..++..+.+.++.|.++.+ +.+|+. .|+|.+..-.+
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l  145 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESI  145 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHH
T ss_pred             HHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHH
Confidence            8889999999998877543322111 01233455666677777664 444443 27887765443

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.27  E-value=1.5e-06  Score=80.90  Aligned_cols=114  Identities=19%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag  105 (340)
                      .+|||.|+||+|++|++++..|+..+.  +|+++|.+.....  ++.+... ..+.... ...++.++++++|+||++|+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~l~~~~~-~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQ--RLAYLEP-ECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGG--GGGGGCC-EEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhh--hhccCCe-EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            347999999999999999999998887  9999998752111  1221111 0111110 11234567899999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ..........+.+..|+.....+++.+.+.... .+|++|.
T Consensus        87 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS  126 (342)
T 2x4g_A           87 YYPSRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGS  126 (342)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECC
T ss_pred             cCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECC
Confidence            643222334556788999999999999887543 3444443

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.27  E-value=4.1e-06  Score=77.00  Aligned_cols=158  Identities=18%  Similarity=0.117  Sum_probs=96.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe---cCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM---GNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~---~~~d~~~al~~aDiVi~~ag  105 (340)
                      |||.|+||+|++|++++..|+..+.  +|+.+|.+.....  +..+.    .+....   ...++.+++++ |+||++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVNP----SAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSCT----TSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcCC----CceEEECccccHHHHhhcCC-CEEEECCC
Confidence            6899999999999999999999887  9999997652100  01111    111111   11124456666 99999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-------CccHHHHHHHHHHhCCCCCCceEeccch
Q 019519          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-------NSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (340)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-------d~~t~~~~~~~~~sg~~~~~kviG~~~l  176 (340)
                      .+...  .......+..|+.....+++.+.+.... .+|++|...       ..++       ...+ .++...+|.+..
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~~~~~~-------e~~~-~~p~~~Y~~sK~  142 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDADVIPTP-------EEEP-YKPISVYGAAKA  142 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBC-------TTSC-CCCCSHHHHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCCCCCCC-------CCCC-CCCCChHHHHHH
Confidence            65322  2345667788999999999999887644 344443211       0010       0111 334445555544


Q ss_pred             hHHHHHHHHHHHcCCCCCCCce-eEEEec
Q 019519          177 DVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (340)
Q Consensus       177 d~~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (340)
                      ...++-..+++..|++..-++. .++|..
T Consensus       143 ~~e~~~~~~~~~~g~~~~~lrp~~v~g~~  171 (312)
T 3ko8_A          143 AGEVMCATYARLFGVRCLAVRYANVVGPR  171 (312)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeccccCcC
Confidence            4445556666667776555553 567754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.27  E-value=4e-06  Score=77.63  Aligned_cols=102  Identities=19%  Similarity=0.237  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHH----H---H-hcCCC-------------CceEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA----D---V-GHINT-------------RSEVAG   83 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~----d---l-~~~~~-------------~~~v~~   83 (340)
                      +++||+|||+ |.+|+.++..|+..++  +|+++|+++.  +....    .   + .....             ..++..
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            3569999998 9999999999999887  9999999861  11000    0   1 11100             013554


Q ss_pred             EecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc
Q 019519           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS  150 (340)
Q Consensus        84 ~~~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~  150 (340)
                      .   +|+.+++++||+||++.  |            .+..+.+++.+.+.++++ ++++  +||...+
T Consensus        91 ~---~~~~~~~~~aD~Vi~av--p------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i  139 (302)
T 1f0y_A           91 S---TDAASVVHSTDLVVEAI--V------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSSL  139 (302)
T ss_dssp             E---SCHHHHTTSCSEEEECC--C------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred             e---cCHHHhhcCCCEEEEcC--c------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCCC
Confidence            3   46666899999999986  2            234556677777887764 6654  5665553

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.25  E-value=2e-06  Score=80.03  Aligned_cols=171  Identities=13%  Similarity=0.028  Sum_probs=97.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CC---ccccccCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~~aDiVi  101 (340)
                      |+.|||.|+||+|++|++++..|+..+...+|+.+|..........+.+......+..... -+   ++.+++.++|+||
T Consensus         1 M~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   80 (336)
T 2hun_A            1 MHSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVV   80 (336)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEE
Confidence            3457999999999999999999988752238999987531000011221111123333321 12   2335567899999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-------CccHHHHHHHHHHhCCCCCCceEe
Q 019519          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-------NSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-------d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      ++||.....  .....+.+..|+.....+++.+.+......+|++|...       ..++       ...+ .++...+|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~-------E~~~-~~~~~~Y~  152 (336)
T 2hun_A           81 HLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFT-------ENDR-LMPSSPYS  152 (336)
T ss_dssp             ECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBC-------TTBC-CCCCSHHH
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcC-------CCCC-CCCCCccH
Confidence            999864211  12334577889999999999999885445666665321       0011       0112 33334455


Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      .+.....++-..+++.+|++..-++ ..++|..
T Consensus       153 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~  185 (336)
T 2hun_A          153 ATKAASDMLVLGWTRTYNLNASITRCTNNYGPY  185 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcC
Confidence            5444444455556666666544444 3456644

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.24  E-value=4.2e-06  Score=78.35  Aligned_cols=168  Identities=15%  Similarity=0.041  Sum_probs=101.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC---CceEEEEec----CCccccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMG----NDQLGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~----~~d~~~al~~a   97 (340)
                      +++||.|+||+|++|++++..|+..+.  +|+.+|...  ......++.....   ..++.....    ..++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            467999999999999999999999887  999999865  2222233332110   012333221    12345678899


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC------C-ccHHHHHHHHHHhCCCCCC
Q 019519           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV------N-STVPIAAEVFKKAGTYNEK  168 (340)
Q Consensus        98 DiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~------d-~~t~~~~~~~~~sg~~~~~  168 (340)
                      |+||++|+.....  .....+.+..|+.....+++.+.+....- +|.+|...      + .++       .... ..+.
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~SS~~vyg~~~~~~~~-------E~~~-~~p~  172 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS-FTYAASSSTYGDHPALPKV-------EENI-GNPL  172 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEEEGGGGTTCCCSSBC-------TTCC-CCCC
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEecHHhcCCCCCCCCc-------cCCC-CCCC
Confidence            9999999864211  12345677889999999999999876544 44443211      0 110       0011 1233


Q ss_pred             ceEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEecC
Q 019519          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (340)
Q Consensus       169 kviG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (340)
                      ..+|.+.....++...+++..|++..-++ ..++|...
T Consensus       173 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  210 (351)
T 3ruf_A          173 SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQ  210 (351)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTC
T ss_pred             ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCC
Confidence            44555444444555566666777766565 35777543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.24  E-value=4.7e-06  Score=77.11  Aligned_cols=118  Identities=20%  Similarity=0.255  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHH-hcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADV-GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl-~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .+||+|||+ |.+|+.+|..++ .|+  +|+++|+++. ...+.+. .+.. ..+++..   +|+. ++++||+||.+. 
T Consensus        12 ~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~~---~~~~-~~~~aDlVieav-   81 (293)
T 1zej_A           12 HMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEFT---TTLE-KVKDCDIVMEAV-   81 (293)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEEE---SSCT-TGGGCSEEEECC-
T ss_pred             CCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEEe---CCHH-HHcCCCEEEEcC-
Confidence            369999998 999999999999 888  9999999862 1112221 1111 1246543   4554 489999999985 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc-cHHHHHHHHHHhCCCCCCceEeccchh
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-TVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~-~t~~~~~~~~~sg~~~~~kviG~~~ld  177 (340)
                       |            ++..+.+.+...+... |++++  +||...+ .+.+.    ...  -.+.+++|+..++
T Consensus        82 -p------------e~~~vk~~l~~~l~~~-~~~Il--asntSti~~~~~a----~~~--~~~~r~~G~Hf~~  132 (293)
T 1zej_A           82 -F------------EDLNTKVEVLREVERL-TNAPL--CSNTSVISVDDIA----ERL--DSPSRFLGVHWMN  132 (293)
T ss_dssp             -C------------SCHHHHHHHHHHHHTT-CCSCE--EECCSSSCHHHHH----TTS--SCGGGEEEEEECS
T ss_pred             -c------------CCHHHHHHHHHHHhcC-CCCEE--EEECCCcCHHHHH----HHh--hcccceEeEEecC
Confidence             2            4566667777778888 88865  5666543 23222    212  2356788886543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.24  E-value=2.8e-06  Score=77.00  Aligned_cols=149  Identities=13%  Similarity=0.082  Sum_probs=92.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-c---CCccccccCCCCEEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVII  102 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVi~  102 (340)
                      ++++|.|+||+|++|++++..|+..+.  +|++.|.++....         ...+.... +   ..++.+++++.|+||+
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~   70 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVH   70 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence            456899999999999999999998876  8999998762111         11222221 1   1234567789999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc----HHHHHHHHHHhCCCCCCceEeccchhH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST----VPIAAEVFKKAGTYNEKKLFGVTTLDV  178 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~----t~~~~~~~~~sg~~~~~kviG~~~ld~  178 (340)
                      .||..  ........+..|+.....+++.+.+.... .||++|.-...-    ....   ....+ .++...+|.+....
T Consensus        71 ~Ag~~--~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~g~~~~~~~~---~e~~~-~~~~~~Y~~sK~~~  143 (267)
T 3rft_A           71 LGGIS--VEKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFASSNHTIGYYPQTERL---GPDVP-ARPDGLYGVSKCFG  143 (267)
T ss_dssp             CCSCC--SCCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGTTSBTTSCB---CTTSC-CCCCSHHHHHHHHH
T ss_pred             CCCCc--CcCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcchHHhCCCCCCCCC---CCCCC-CCCCChHHHHHHHH
Confidence            99874  22345667788999999999999877544 455554221100    0000   00112 33444555554444


Q ss_pred             HHHHHHHHHHcCCCC
Q 019519          179 VRAKTFYAGKANVNV  193 (340)
Q Consensus       179 ~R~~~~la~~l~v~~  193 (340)
                      ..+-..+++.+|++.
T Consensus       144 e~~~~~~a~~~g~~~  158 (267)
T 3rft_A          144 ENLARMYFDKFGQET  158 (267)
T ss_dssp             HHHHHHHHHHHCCCE
T ss_pred             HHHHHHHHHHhCCeE
Confidence            455566677777653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.23  E-value=5e-06  Score=81.12  Aligned_cols=107  Identities=20%  Similarity=0.266  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC--C--------------CceEEEEecCCcccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--T--------------RSEVAGYMGNDQLGQ   92 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~--~--------------~~~v~~~~~~~d~~~   92 (340)
                      |||+|||+ |.||..++..|+..++  +|+++|+++.+..  .+....  .              ..++..+   +|+.+
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~~~--~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t---~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKID--LINQGKSPIVEPGLEALLQQGRQTGRLSGT---TDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEEEE---SCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHhCCCCCcCCCCHHHHHHhhcccCceEEe---CCHHH
Confidence            69999997 9999999999999887  8999999752211  222210  0              1235543   56667


Q ss_pred             ccCCCCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHh-CC---CcEEEEe-cCCCCc
Q 019519           93 ALEDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKY-CP---NAIVNMI-SNPVNS  150 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~-~p---~a~viv~-tNP~d~  150 (340)
                      ++++||+||++...|... +.       .++..+++.++.+.++ .+   +.+|+.. |+|.+.
T Consensus        73 ~~~~aDvviiaVptp~~~~~~-------~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGD-------LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSS-------BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             HhccCCEEEEEcCCCcccCCC-------cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            899999999998766432 22       2223344444555443 24   5666554 788776

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.22  E-value=2.5e-06  Score=80.49  Aligned_cols=118  Identities=14%  Similarity=0.117  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHh--CCCcceEEEEeCCCc-HH-HHHHH---hcCC--CCceEEEEe-cC---Cccc
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANT-PG-VAADV---GHIN--TRSEVAGYM-GN---DQLG   91 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~--~~~~~el~L~D~~~~-~~-~~~dl---~~~~--~~~~v~~~~-~~---~d~~   91 (340)
                      .+++++|.|+||+|++|++++..|+.  .+.  +|+++|.... .. .....   ....  ....+.... +-   .++.
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~   84 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLR   84 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHH
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHH
Confidence            35578999999999999999999998  777  9999997542 00 00000   0000  011122221 11   1233


Q ss_pred             cc-cCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           92 QA-LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        92 ~a-l~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ++ ..++|+||++||............+..|+.....+++.+++....  +|++|.
T Consensus        85 ~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~SS  138 (362)
T 3sxp_A           85 RLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYASS  138 (362)
T ss_dssp             HHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEEE
T ss_pred             HhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeCc
Confidence            44 689999999998654334566778899999999999999877544  454443

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.19  E-value=3.2e-06  Score=78.74  Aligned_cols=114  Identities=18%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cC---CccccccCC--CC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GN---DQLGQALED--SD   98 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~~--aD   98 (340)
                      ||||.|+||+|++|++++..|+..+.  +|+++|.+.   ......++....   ++.... +-   .++.+++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLG---NFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCC---ceEEEEcCCCCHHHHHHHHhccCCC
Confidence            46999999999999999999998887  999999743   222223343221   222221 11   223456677  99


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        99 iVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +||++||.....  .......+..|+.....+++.+.+....+.+|++|.
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS  125 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST  125 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            999999864211  123456678899999999999998876556666653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.19  E-value=3.6e-06  Score=78.28  Aligned_cols=117  Identities=15%  Similarity=-0.005  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CC---ccccccCC--CCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALED--SDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~~--aDiV  100 (340)
                      +.++|.|+||+|++|++++..|+..|.  +|+++|.+........+.......++..... -+   ++.+++++  .|+|
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   79 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEV   79 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence            457999999999999999999998887  9999998752111011221111113333211 11   23345554  5999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |++||.....  .......+..|+.....+++.+.+......+|++|
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           80 YNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             EECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            9999865311  23455677889999999999988775435566554

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.19  E-value=1.8e-05  Score=73.57  Aligned_cols=117  Identities=12%  Similarity=0.046  Sum_probs=75.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCC-CceEEEEe----cCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINT-RSEVAGYM----GNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~-~~~v~~~~----~~~d~~~al~~aDiVi  101 (340)
                      +++|.|+||+|++|++++..|+..++  +|+.++.+.. .....++.+... ..+++...    ...++.++++++|+||
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   82 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF   82 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence            46999999999999999999999887  8887776542 111222221110 01233222    1234556789999999


Q ss_pred             EcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          102 IPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       102 ~~ag~~~~~g~~r-~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ++|+......... .+.+..|+.....+++.+.+...-..+|++|.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           83 HVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             ECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            9997542112222 34678899999999999988763345555543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.18  E-value=4.8e-06  Score=78.30  Aligned_cols=112  Identities=15%  Similarity=0.074  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC-----CCCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-----DSDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-----~aDiV  100 (340)
                      +.|+|.|+||+|++|++++..|+..+ .  +|+++|.+........+.....  ..... ....+.++++     ++|+|
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~--~~d~~-~~~~~~~~~~~~~~~~~d~V  119 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNI--ADYMD-KEDFLIQIMAGEEFGDVEAI  119 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCC--SEEEE-HHHHHHHHHTTCCCSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceE--eeecC-cHHHHHHHHhhcccCCCCEE
Confidence            45799999999999999999999887 5  8999987652211111211111  11111 1123334555     59999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |++||..........+.+..|+.....+++.+.+...  .+|++|
T Consensus       120 ih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          120 FHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             EECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             EECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            9999865443445667788999999999999988765  445444

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.18  E-value=8.4e-06  Score=70.82  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=69.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||.|+||+|++|++++..|+..+.  +|++++.+.....  ++. ... .-+.......+- +++.++|+||+++|.+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~-~~~-~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~   73 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKIT--QTH-KDI-NILQKDIFDLTL-SDLSDQNVVVDAYGISP   73 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHH--HHC-SSS-EEEECCGGGCCH-HHHTTCSEEEECCCSST
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhh--hcc-CCC-eEEeccccChhh-hhhcCCCEEEECCcCCc
Confidence            6899999999999999999999987  9999998763221  222 111 111111111111 67899999999998753


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ..       ...|....+.+++.+++.. ...++++|.
T Consensus        74 ~~-------~~~~~~~~~~l~~a~~~~~-~~~~v~~SS  103 (221)
T 3ew7_A           74 DE-------AEKHVTSLDHLISVLNGTV-SPRLLVVGG  103 (221)
T ss_dssp             TT-------TTSHHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred             cc-------cchHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            22       2347888888988888664 335555554

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.18  E-value=7.8e-06  Score=76.07  Aligned_cols=114  Identities=11%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--H--HHHHHHhcCCCCceEEEEe----cCCccccccCCCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P--GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~--~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDi   99 (340)
                      ++||.|+||+|++|++++..|+..|+  +|+.++.+..  .  ....++...   ..+....    ...++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQEL---GDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGG---SCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCC---CcEEEEecCCCChHHHHHHHcCCCE
Confidence            36999999999999999999999887  8887666531  1  111223211   1233221    12345567889999


Q ss_pred             EEEcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          100 VIIPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r-~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ||++|+......... .+++..|+.....+++.+.+...-..+|++|.
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS  131 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS  131 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence            999987542111111 23677899999999999887642235555543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.16  E-value=4.9e-06  Score=80.37  Aligned_cols=113  Identities=17%  Similarity=0.233  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC--------------CceEEEEecCCcccccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--------------RSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~--------------~~~v~~~~~~~d~~~al   94 (340)
                      |||+|||+ |.||..++..|+. ++  +|+++|+++.+.  ..+.....              ..++..+   +|+.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~~--~~l~~~~~~i~e~~l~~~~~~~~~~l~~t---~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSKV--DKINNGLSPIQDEYIEYYLKSKQLSIKAT---LDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHHH--HHHHTTCCSSCCHHHHHHHHHSCCCEEEE---SCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHHH--HHHHcCCCCcCCCCHHHHHHhccCcEEEe---CCHHHHh
Confidence            69999998 9999999999988 76  999999975221  12222111              1134443   4556788


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHHH
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIA  155 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~t~~~  155 (340)
                      ++||+||++...+...+..+.|     +..+.++++.+.+..|+.+|+. .|||.+....+.
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~  128 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMR  128 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH
Confidence            9999999997655321111111     1234444444444457777665 799998866554

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=6.6e-06  Score=72.10  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec----CCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVi~~  103 (340)
                      ||||.|+||+|++|++++..|+..+.  +|++++.+....     ....  ..+.....    ..++.++++++|+||++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-----~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKI-----KIEN--EHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGC-----CCCC--TTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccc-----hhcc--CceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            57999999999999999999999887  999999875211     1111  23333221    12345678999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|....    ..+++..|....+.+++.+.+...+ .+|.+|
T Consensus        75 a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           75 FNPGWN----NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            975421    1124567899999999999887644 444444

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.14  E-value=4.7e-06  Score=76.82  Aligned_cols=161  Identities=15%  Similarity=0.109  Sum_probs=93.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEe---cCCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM---GNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~---~~~d~~~al~~aDiVi~~  103 (340)
                      |+||.|+||+|++|++++..|+..+   +++.++... ...   +...    ..+....   ...++.++++++|+||++
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~---~~~~----~~~~~~~~Dl~~~~~~~~~~~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNE---EFVN----EAARLVKADLAADDIKDYLKGAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCG---GGSC----TTEEEECCCTTTSCCHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCCh---hhcC----CCcEEEECcCChHHHHHHhcCCCEEEEC
Confidence            4699999999999999999999887   345555432 110   0011    1122211   113456778899999999


Q ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHH----HHHHHHHHhCCCCCCceEeccchh
Q 019519          104 AGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP----IAAEVFKKAGTYNEKKLFGVTTLD  177 (340)
Q Consensus       104 ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~----~~~~~~~~sg~~~~~kviG~~~ld  177 (340)
                      |+.+..  ........+..|+.....+++.+.+.... .+|++|.-. +...    ..   -...+ .++...+|.+...
T Consensus        71 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~-vyg~~~~~~~---~E~~~-~~~~~~Y~~sK~~  144 (313)
T 3ehe_A           71 AANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTST-VYGEAKVIPT---PEDYP-THPISLYGASKLA  144 (313)
T ss_dssp             CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGG-GGCSCSSSSB---CTTSC-CCCCSHHHHHHHH
T ss_pred             CCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchH-HhCcCCCCCC---CCCCC-CCCCCHHHHHHHH
Confidence            986532  23456677889999999999999887644 455454311 0000    00   00111 2333445554444


Q ss_pred             HHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          178 VVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       178 ~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      ..++-..+++..|++..-++ ..++|..
T Consensus       145 ~e~~~~~~~~~~g~~~~ilRp~~v~G~~  172 (313)
T 3ehe_A          145 CEALIESYCHTFDMQAWIYRFANVIGRR  172 (313)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECSCEESTT
T ss_pred             HHHHHHHHHHhcCCCEEEEeeccccCcC
Confidence            44555666677776554444 3466754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.14  E-value=8.1e-06  Score=71.27  Aligned_cols=104  Identities=19%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||.|+||+|++|+.++..|+..+.  +|++++.+...  ..++..... .-+.......+- +++.++|+||+++|...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~~~~-~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~   74 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLGATV-ATLVKEPLVLTE-ADLDSVDAVVDALSVPW   74 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTCTTS-EEEECCGGGCCH-HHHTTCSEEEECCCCCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccCCCc-eEEecccccccH-hhcccCCEEEECCccCC
Confidence            6899999999999999999999887  99999986422  122322111 111111111111 56899999999998753


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      .+..     ...|....+.+++.+++..  ..+|++|
T Consensus        75 ~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           75 GSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             TSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             Ccch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            2222     2468888899999888775  5566564

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.12  E-value=4.8e-06  Score=77.35  Aligned_cols=115  Identities=17%  Similarity=0.065  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH---HHHHHHhcCCCCceEEEEec-CC---ccccccCC--C
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-ND---QLGQALED--S   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~~--a   97 (340)
                      +++||.|+||+|++|++++..|+..+.  +|+++|.+...   ....++..   ...+..... -+   ++.+++++  .
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~   87 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKAQP   87 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHcCC
Confidence            458999999999999999999998887  99999986521   11122211   123333221 11   23345554  5


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        98 DiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      |+||++||.....  .......+..|+.....+++.+.+......+|++|.
T Consensus        88 d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  138 (335)
T 1rpn_A           88 QEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST  138 (335)
T ss_dssp             SEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             CEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            9999999864321  234566778899999999999988864345565543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.09  E-value=4e-06  Score=79.21  Aligned_cols=112  Identities=15%  Similarity=0.175  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-C----CccccccCCCCE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N----DQLGQALEDSDV   99 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~----~d~~~al~~aDi   99 (340)
                      |++|||.|+||+|++|++++..|+.. ++  +|+.+|.+....  .++...   ..++.... -    ..+.++++++|+
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~~---~~v~~~~~Dl~~d~~~~~~~~~~~d~   94 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVKH---ERMHFFEGDITINKEWVEYHVKKCDV   94 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGGS---TTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhccC---CCeEEEeCccCCCHHHHHHHhccCCE
Confidence            34679999999999999999999887 76  999999865211  111111   13333321 1    123456789999


Q ss_pred             EEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          100 VIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       100 Vi~~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ||++|+......  ....+.+..|+.....+++.+.+.+  ..+|.+|.
T Consensus        95 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           95 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            999998653211  2345667889988999999999887  45665554

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.09  E-value=1.2e-05  Score=76.49  Aligned_cols=110  Identities=15%  Similarity=-0.007  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-c---CCccccccCCCCEEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVII  102 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVi~  102 (340)
                      ++|||.|+||+|++|++++..|+..++  +|+++|.+.....  .+...    .+.... +   ..++.++++++|+||+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~v~~~~~Dl~d~~~~~~~~~~~d~Vih   99 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHM--TEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFN   99 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSS--CGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccch--hhccC----CceEEECCCCCHHHHHHHhCCCCEEEE
Confidence            467999999999999999999998887  8999998652110  01111    111111 1   1234567889999999


Q ss_pred             cCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          103 PAGVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       103 ~ag~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|+.....   .....+.+..|+.....+++.+.+.... .+|++|
T Consensus       100 ~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~S  144 (379)
T 2c5a_A          100 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYAS  144 (379)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            99864321   2345677788999999999999876544 444444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.07  E-value=7.8e-06  Score=81.35  Aligned_cols=104  Identities=16%  Similarity=0.115  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      +|||.|+||+|++|++++..|+..++  +|+.++.+....     .      .+.... .....++++++|+||++|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~-----~------~v~~d~-~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKP-----G------KRFWDP-LNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCT-----T------CEECCT-TSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCc-----c------ceeecc-cchhHHhcCCCCEEEECCCCc
Confidence            78999999999999999999999887  999999875211     0      121111 122357789999999999865


Q ss_pred             CCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          108 RKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       108 ~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ...   ......++..|+...+.+++.+.+...-..+|++|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            321   22345677889999999999855444333455454

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.06  E-value=1.1e-05  Score=78.54  Aligned_cols=115  Identities=19%  Similarity=0.222  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC--------------CCceEEEEecCCccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------------TRSEVAGYMGNDQLG   91 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~   91 (340)
                      ..+|||+|||+ |.+|..+|..|+. ++  +|+++|+++.+..  .+....              ...++..+   +|++
T Consensus        34 ~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v~--~l~~g~~~i~e~~l~~ll~~~~~~l~~t---td~~  104 (432)
T 3pid_A           34 SEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKVD--MLNQKISPIVDKEIQEYLAEKPLNFRAT---TDKH  104 (432)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHHH--HHHTTCCSSCCHHHHHHHHHSCCCEEEE---SCHH
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHhh--HHhccCCccccccHHHHHhhccCCeEEE---cCHH
Confidence            45789999998 9999999998887 76  9999999862211  122110              01245543   5777


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHH
Q 019519           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNSTVPI  154 (340)
Q Consensus        92 ~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~d~~t~~  154 (340)
                      +++++||+||++...+.......     -++..+++.++.+.+..|+.+++.- |.|.+..-.+
T Consensus       105 ea~~~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l  163 (432)
T 3pid_A          105 DAYRNADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDI  163 (432)
T ss_dssp             HHHTTCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHH
T ss_pred             HHHhCCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHH
Confidence            89999999999854432111100     1222333333444444566655543 5565544333

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.06  E-value=2.3e-05  Score=71.80  Aligned_cols=98  Identities=18%  Similarity=0.151  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||.|+||+|+||++++..|...|+  +|+.+..+...            ..+...  ..+ .++++++|.||++++.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~------------~~~~~~--~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGP------------GRITWD--ELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCT------------TEEEHH--HHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCc------------Ceeecc--hhh-HhhccCCCEEEEeccCcc
Confidence            7999999999999999999999998  89888765311            122211  112 367899999999987542


Q ss_pred             CCC------CCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEE
Q 019519          109 KPG------MTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNM  143 (340)
Q Consensus       109 ~~g------~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv  143 (340)
                      ...      ....++...|+...+.+.+.++.... ..+++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~  105 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVL  105 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEE
Confidence            211      11345667889999999998887763 334443

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.05  E-value=1.5e-05  Score=74.18  Aligned_cols=112  Identities=16%  Similarity=0.090  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CC---ccccccC--CCCE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALE--DSDV   99 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~--~aDi   99 (340)
                      ++.|+|.|+||+|++|++++..|+..+.  +|+++|.+.....  ++....  ..+..... -+   ++.++++  ++|+
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~~D~   91 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDSFKPTH   91 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhhcCCCE
Confidence            4568999999999999999999998886  9999998541100  011110  12333221 12   2345667  9999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ||++||..........+ +..|+.....+++.+.+... ..+|++|
T Consensus        92 vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  135 (330)
T 2pzm_A           92 VVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGV-KRLLNFQ  135 (330)
T ss_dssp             EEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTC-SEEEEEE
T ss_pred             EEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCC-CEEEEec
Confidence            99999865332222233 67899999999999987653 3555554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.05  E-value=1.4e-05  Score=78.90  Aligned_cols=102  Identities=13%  Similarity=0.154  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC--C--------------CceEEEEecCCccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--T--------------RSEVAGYMGNDQLG   91 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~--~--------------~~~v~~~~~~~d~~   91 (340)
                      .|||+|||+ |.||..++..|+..|+  +|+++|+++.+.  ..+....  .              ..++..+   +|+.
T Consensus         8 ~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~v--~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t---td~~   79 (478)
T 2y0c_A            8 SMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAKI--DILNNGGVPIHEPGLKEVIARNRSAGRLRFS---TDIE   79 (478)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE---CCHH
T ss_pred             CceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHCCCCCcCCCCHHHHHHHhcccCCEEEE---CCHH
Confidence            489999998 9999999999999888  999999975221  1222110  0              1245543   5666


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE
Q 019519           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNM  143 (340)
Q Consensus        92 ~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv  143 (340)
                      +++++||+||++...|.+.+.      .-++..++++++.|.++. |+.+|++
T Consensus        80 ~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~  126 (478)
T 2y0c_A           80 AAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVD  126 (478)
T ss_dssp             HHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             HHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEE
Confidence            789999999999877643322      134455566666666665 4555443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.04  E-value=8.7e-06  Score=84.27  Aligned_cols=119  Identities=19%  Similarity=0.216  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHH--HH----HHhcCCC---------CceEEEEecCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV--AA----DVGHINT---------RSEVAGYMGND   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~--~~----dl~~~~~---------~~~v~~~~~~~   88 (340)
                      +.+||+|||+ |.+|+.++..++..++  +|+++|+++.   .+.  ..    .+.....         ..+++..   +
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~---~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT---L  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE---S
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE---C
Confidence            4579999998 9999999999999998  9999999861   111  00    0111110         1235543   4


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-cHHHHHHHHHHhCCCC
Q 019519           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTYN  166 (340)
Q Consensus        89 d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-~t~~~~~~~~~sg~~~  166 (340)
                      |+ +++++||+||++.  |            .+..+.+++...+.++++ ++++  +||...+ ++.++    ...  -.
T Consensus       387 d~-~~~~~aDlVIeaV--~------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl~i~~la----~~~--~~  443 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAV--V------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTISISLLA----KAL--KR  443 (715)
T ss_dssp             SS-TTGGGCSEEEECC--C------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHHHHG----GGC--SC
T ss_pred             CH-HHHCCCCEEEEcC--C------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCCCHHHHH----HHh--cC
Confidence            66 7899999999986  2            456677788888888874 5644  6776654 34332    111  23


Q ss_pred             CCceEecc
Q 019519          167 EKKLFGVT  174 (340)
Q Consensus       167 ~~kviG~~  174 (340)
                      +++++|++
T Consensus       444 ~~~~ig~h  451 (715)
T 1wdk_A          444 PENFVGMH  451 (715)
T ss_dssp             GGGEEEEE
T ss_pred             ccceEEEE
Confidence            45677664

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.03  E-value=7.8e-06  Score=76.30  Aligned_cols=110  Identities=16%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhC--CCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEec-C---CccccccCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSD   98 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~--~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aD   98 (340)
                      |++|.|+||+|++|++++..|+..  +.  +|+++|.+..   .....++.+    ..+..... -   .++.++++++|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~d   77 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAILG----DRVELVVGDIADAELVDKLAAKAD   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGCS----SSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhcc----CCeEEEECCCCCHHHHHHHhhcCC
Confidence            579999999999999999999887  55  8999997541   111111211    23333221 1   23446788999


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        99 iVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +||++||.....  .......+..|+.....+++.+.+...  .+|++|
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            999999865311  012345678899999999999988754  555554

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.99  E-value=4.4e-05  Score=74.39  Aligned_cols=116  Identities=17%  Similarity=0.165  Sum_probs=76.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC----------------CCCceEEEEecCCcc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----------------NTRSEVAGYMGNDQL   90 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~----------------~~~~~v~~~~~~~d~   90 (340)
                      +|.+|+|||. |.||..+|..++..++  +|+.+|+++.+-  ..|...                ....+++.+   +|.
T Consensus        20 ~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~kV--~~ln~G~~pi~Epgl~ell~~~~~~g~l~~t---t~~   91 (444)
T 3vtf_A           20 HMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSIV--ERLRAGRPHIYEPGLEEALGRALSSGRLSFA---ESA   91 (444)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHH--HHHHTTCCSSCCTTHHHHHHHHHHTTCEEEC---SSH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHCCCCCCCCCCHHHHHHHHHHcCCeeEE---cCH
Confidence            4669999998 9999999999998888  999999986221  112111                012356653   566


Q ss_pred             ccccCCCCEEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHH
Q 019519           91 GQALEDSDVVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVP  153 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~t~  153 (340)
                      .+++++||++|++.+.|...+. ..+.++.   ...+.+++.++..++..+|++ .|-|.+..-.
T Consensus        92 ~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~---~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~  153 (444)
T 3vtf_A           92 EEAVAATDATFIAVGTPPAPDGSADLRYVE---AAARAVGRGIRAKGRWHLVVVKSTVPPGTTEG  153 (444)
T ss_dssp             HHHHHTSSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHHHHCSCCEEEECSCCCTTTTTT
T ss_pred             HHHHhcCCceEEEecCCCCCCCCCCcHHHH---HHHHHHHHHHhhcCCCeEEEEeCCCCCchHHH
Confidence            7889999999999988865532 2222222   445666666665554444433 4667765433

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.99  E-value=6.6e-06  Score=72.71  Aligned_cols=94  Identities=22%  Similarity=0.320  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEE-EeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L-~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |+||||+|||+ |.+|..++..|...++  ++.+ +|.++.  +..+.++.     .....    ++ .++++++|+||+
T Consensus        21 m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-----~~~~~----~~-~~~~~~aDvVil   87 (220)
T 4huj_A           21 QSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-----ASVKA----VE-LKDALQADVVIL   87 (220)
T ss_dssp             GGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-----TTEEE----CC-HHHHTTSSEEEE
T ss_pred             hcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-----CCccc----Ch-HHHHhcCCEEEE
Confidence            44689999997 9999999999998887  8888 898762  22222222     11211    22 466899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      +.  |              ...+.++++.+.. .++.+++.++||.+
T Consensus        88 av--p--------------~~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           88 AV--P--------------YDSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             ES--C--------------GGGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             eC--C--------------hHHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            85  2              1223444455544 45678888999984

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.99  E-value=3.8e-05  Score=67.24  Aligned_cols=77  Identities=21%  Similarity=0.343  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      .++||+|||+ |.+|+.++..|...++  +|.++|.++.                           ++++||+||++.. 
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-   66 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-   66 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-
Confidence            4689999997 9999999999998887  8999987532                           3679999999862 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      +               ..++++++.+..+.++.+++.++|+.+
T Consensus        67 ~---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 Y---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             H---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             c---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            1               123344444443334778888999765

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.99  E-value=2e-05  Score=73.82  Aligned_cols=168  Identities=14%  Similarity=0.032  Sum_probs=98.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCC---CceEEEEec-C---CccccccCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT---RSEVAGYMG-N---DQLGQALED   96 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~---~~~v~~~~~-~---~d~~~al~~   96 (340)
                      ++++||.|+||+|++|++++..|+..+.  +|+++|.+..  .....++.....   ...+..... -   .++.+++++
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  102 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAG  102 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTT
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcC
Confidence            3467999999999999999999998887  8999998641  111112211000   012332221 1   234467789


Q ss_pred             CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-------ccHHHHHHHHHHhCCCCC
Q 019519           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN-------STVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        97 aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d-------~~t~~~~~~~~~sg~~~~  167 (340)
                      +|+||++||.....  .......+..|+.....+++.+.+.... .+|++|...-       .++       .... ..+
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~-------E~~~-~~~  173 (352)
T 1sb8_A          103 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKV-------EDTI-GKP  173 (352)
T ss_dssp             CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBC-------TTCC-CCC
T ss_pred             CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCCCCCCC-------CCCC-CCC
Confidence            99999999864211  1234556778999999999999876543 4454443210       010       0000 122


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      ...+|.+.....++-..+++..|++..-++ +.++|..
T Consensus       174 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~  211 (352)
T 1sb8_A          174 LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRR  211 (352)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTT
T ss_pred             CChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcC
Confidence            334444444444455555666677665555 3577754

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=97.99  E-value=2.8e-05  Score=71.15  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=73.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCC-----CCEEEEc
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED-----SDVVIIP  103 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~-----aDiVi~~  103 (340)
                      ||.|+||+|++|++++..|+..+ .  +|+++|.........++........+.   ....+.+++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            68999999999999999999887 5  899998765221111222211111121   11234455654     9999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |+............+..|+.....+++.+.+...  .+|++|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865443345667788999999999999998765  455444

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.98  E-value=1.1e-05  Score=76.00  Aligned_cols=114  Identities=17%  Similarity=0.245  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEec-C---CccccccCCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-N---DQLGQALEDSD   98 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aD   98 (340)
                      ++.++|.|+||+|++|++++..|+.. +. .+|+++|.++..  ....++..    ..+..... -   .++.++++++|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D   93 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVD   93 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCC
Confidence            44579999999999999999988877 53 389999987522  22222322    13333321 1   23446788999


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        99 iVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +||++||....+  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        94 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           94 ICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             EEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            999999875321  1234567788999999999999887544 445454

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.97  E-value=7.3e-05  Score=63.93  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cC---CccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~~aDiVi~~  103 (340)
                      .|||.|+||+|++|++++..|+..+.  +|++++.+...     +.... ..++.... +-   .++.++++++|+||++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~-----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~   74 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhh-----ccccc-CCceEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            47999999999999999999998886  99999986521     11110 11222221 11   2345678999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|........     ..|......+++.+.+...+ .++++|
T Consensus        75 a~~~~~~~~~-----~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           75 LGTRNDLSPT-----TVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             ccCCCCCCcc-----chHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            9865321111     25777888888888877544 445444

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.96  E-value=1.4e-05  Score=74.29  Aligned_cols=114  Identities=15%  Similarity=0.091  Sum_probs=74.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-c---CCccccccC--CCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-G---NDQLGQALE--DSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~--~aDi   99 (340)
                      +|+|.|+||+|++|++++..|+..|.  +|+++|.+.  ......++.... ...+.... +   ..++.++++  ++|+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPITA   81 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence            46999999999999999999999987  899999865  222222222110 01122211 1   122345555  8999


Q ss_pred             EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       100 Vi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ||++||.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  128 (341)
T 3enk_A           82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSS  128 (341)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEe
Confidence            99999864211  1233466788999999999999887644 444444

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.96  E-value=5.8e-05  Score=69.40  Aligned_cols=116  Identities=14%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC-----Cc----eEEEEecCCccccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RS----EVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~-----~~----~v~~~~~~~d~~~al~~a   97 (340)
                      .||||+|||+ |.+|+.++..|...++  +|.++|.++....  .+.+...     ..    ++...+ ..+..++++++
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   75 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHIE--AIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQV   75 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHH--HHHhCCEEEEeCCCeeEecceeec-chhhcccCCCC
Confidence            4689999998 9999999999998887  9999998752211  1211110     00    111111 11222344599


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceE
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kvi  171 (340)
                      |+||++...                ..+.++++.+..+. |+.+++.++|..+....+       ...+++.+++
T Consensus        76 d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l-------~~~~~~~~vi  127 (316)
T 2ew2_A           76 DLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVL-------EKYVPKENIL  127 (316)
T ss_dssp             SEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHH-------TTTSCGGGEE
T ss_pred             CEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHH-------HHHcCCccEE
Confidence            999998521                12456666777665 678888888887643222       1125666777

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.95  E-value=1.3e-05  Score=70.07  Aligned_cols=98  Identities=20%  Similarity=0.220  Sum_probs=64.3

Q ss_pred             CCe-EEEEcCCCChHHHHHHHHH-hCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-c---CCccccccCCCCEEE
Q 019519           28 DRK-VAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~K-I~IiGaaG~VG~~~a~~l~-~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVi  101 (340)
                      ||| |.|+||+|++|+.++..|+ ..+.  +|++++.++.. ...++....  ..+.... +   ..++.++++++|+||
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIIDH--ERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHTS--TTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccCC--CceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            455 9999999999999999999 7887  89999976420 112221111  1233222 1   123456789999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +++|..             |.. .+.+++.+++.... .+|++|
T Consensus        79 ~~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           79 VGAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             ESCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             EcCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            999754             444 78888888776543 445444

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.95  E-value=2e-05  Score=72.24  Aligned_cols=116  Identities=15%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+++||+|||+ |.+|..++..|...++ ..+|.++|.++...  .++.+..   .+...   +|..+++++||+||++.
T Consensus         1 M~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~--~~l~~~~---gi~~~---~~~~~~~~~aDvVilav   71 (280)
T 3tri_A            1 MNTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKL--DFFKEKC---GVHTT---QDNRQGALNADVVVLAV   71 (280)
T ss_dssp             -CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHH--HHHHHTT---CCEEE---SCHHHHHSSCSEEEECS
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHH--HHHHHHc---CCEEe---CChHHHHhcCCeEEEEe
Confidence            34689999998 9999999999998874 45899999886322  2222211   12332   34568899999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                        |  +            ..+.++++.+..+  .++.+++.+++.+.+ ..+    .+..+  .+.++++.
T Consensus        72 --~--p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~~-~~l----~~~l~--~~~~vvr~  119 (280)
T 3tri_A           72 --K--P------------HQIKMVCEELKDILSETKILVISLAVGVTT-PLI----EKWLG--KASRIVRA  119 (280)
T ss_dssp             --C--G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCCH-HHH----HHHHT--CCSSEEEE
T ss_pred             --C--H------------HHHHHHHHHHHhhccCCCeEEEEecCCCCH-HHH----HHHcC--CCCeEEEE
Confidence              2  1            2234555555554  456677666666642 322    23322  23577776

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.94  E-value=1.9e-05  Score=74.37  Aligned_cols=104  Identities=21%  Similarity=0.347  Sum_probs=68.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCC-----cceEEEEeCCCc-----HHHHHHHhcCC--------CCceEEEEecC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT-----PGVAADVGHIN--------TRSEVAGYMGN   87 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~-----~~el~L~D~~~~-----~~~~~dl~~~~--------~~~~v~~~~~~   87 (340)
                      |.+|||+|||+ |.+|+.++..|...+.     ..+|.++|.++.     ....+.-.+..        ....+...   
T Consensus         6 m~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---   81 (354)
T 1x0v_A            6 MASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV---   81 (354)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE---
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE---
Confidence            34579999998 9999999999987761     028999998764     33333211110        11234443   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                      +|+.+++++||+||++.  |.              ..+.++++.+..+. |+.+++.++|..+
T Consensus        82 ~~~~~~~~~aD~Vilav--~~--------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           82 PDVVQAAEDADILIFVV--PH--------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             SSHHHHHTTCSEEEECC--CG--------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             cCHHHHHcCCCEEEEeC--CH--------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            45667789999999985  21              13455666676654 5788888888554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.94  E-value=1.7e-05  Score=69.33  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-c----CCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G----NDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~----~~d~~~al~~aDiVi~~  103 (340)
                      |||.|+||+|++|+.++..|+..+.  +|++++.+...     +...   ..+.... +    ..++.++++++|+||++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~-----~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQ-----VPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGG-----SCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccc-----hhhc---CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            5999999999999999999998887  99999987521     1111   1232222 1    12355778999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +|.....      .+..|......+++.+++.... .+|++|.
T Consensus        71 ag~~~~~------~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGKS------LLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTSS------CCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCCC------cEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            9876422      2345667777788888776533 4555554

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=97.93  E-value=2.1e-05  Score=73.06  Aligned_cols=167  Identities=13%  Similarity=0.076  Sum_probs=93.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC-CCc---ceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-C---CccccccCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN-PLV---SRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDiV  100 (340)
                      |||.|+||+|++|++++..|+.. +..   .+|+++|..........+.......++..... -   .++.+++.++|+|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   80 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence            68999999999999999999885 211   38999987531000001111111123333221 1   2234567899999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-------CccHHHHHHHHHHhCCCCCCceE
Q 019519          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-------NSTVPIAAEVFKKAGTYNEKKLF  171 (340)
Q Consensus       101 i~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-------d~~t~~~~~~~~~sg~~~~~kvi  171 (340)
                      |++||.....  .....+.+..|+.....+++.+.+.... .+|++|...       ..++       ...+ .++...+
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~-------E~~~-~~~~~~Y  151 (337)
T 1r6d_A           81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWT-------ESSP-LEPNSPY  151 (337)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBC-------TTSC-CCCCSHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCC-------CCCC-CCCCCch
Confidence            9999864211  0123456788999999999999887543 455444211       0111       0111 2333444


Q ss_pred             eccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       172 G~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      |.+.....++-..+++..|++..-++ ..++|..
T Consensus       152 ~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            54443344454555566676655554 3466654

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=97.91  E-value=1.7e-05  Score=74.44  Aligned_cols=166  Identities=14%  Similarity=0.072  Sum_probs=94.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CC---ccccccC--CCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALE--DSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~--~aDiVi  101 (340)
                      |||.|+||+|++|++++..|+.. +.  +|+++|.+........+.+.....++..... -+   ++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999988876 56  8999987531000011111111123333321 12   2334555  899999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHh--CCC------cEEEEecCCC--C---------------ccHHH
Q 019519          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY--CPN------AIVNMISNPV--N---------------STVPI  154 (340)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~--~p~------a~viv~tNP~--d---------------~~t~~  154 (340)
                      ++||.....  .......+..|+.....+++.+.+.  ..+      +.+|++|...  +               .++  
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~--  156 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT--  156 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC--
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCC--
Confidence            999865310  1123456788999999999998887  533      3666655321  0               010  


Q ss_pred             HHHHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          155 AAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       155 ~~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                           ...+ .++...+|.+.....++-..+++.+|++..-++ +.++|..
T Consensus       157 -----E~~~-~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~  201 (361)
T 1kew_A          157 -----ETTA-YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY  201 (361)
T ss_dssp             -----TTSC-CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             -----CCCC-CCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCC
Confidence                 0111 233444555444444555556666677655555 3456654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.91  E-value=1.6e-05  Score=69.28  Aligned_cols=99  Identities=21%  Similarity=0.252  Sum_probs=62.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |||+|+||+|.+|+.++..|...++  +|.++|.++.  +....++........+..    +++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            5899999559999999999998887  8999998752  111111110000012332    2456778999999998631


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      .                .++++.+.+....++.+++..+|+.+
T Consensus        75 ~----------------~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 E----------------HAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             H----------------HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             h----------------hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            1                12233333433335778888999776

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.91  E-value=5.3e-05  Score=67.92  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHH------------HHHHhcCCCCceEEEEecCCcccc
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV------------AADVGHINTRSEVAGYMGNDQLGQ   92 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~------------~~dl~~~~~~~~v~~~~~~~d~~~   92 (340)
                      +...+||+|||+ |.+|.+++..|+..++  +|.++|.++....            ..++....  ..+..    .+..+
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~e   86 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH--PHVHL----AAFAD   86 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS--TTCEE----EEHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc--Cceec----cCHHH
Confidence            345689999997 9999999999999887  9999998752200            22232211  11222    24467


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ++++||+||++.-.+            .-.+.+.++.   ...-++.+||.++||.
T Consensus        87 ~~~~aDvVilavp~~------------~~~~~~~~i~---~~~l~g~ivi~~s~~~  127 (245)
T 3dtt_A           87 VAAGAELVVNATEGA------------SSIAALTAAG---AENLAGKILVDIANPL  127 (245)
T ss_dssp             HHHHCSEEEECSCGG------------GHHHHHHHHC---HHHHTTSEEEECCCCE
T ss_pred             HHhcCCEEEEccCcH------------HHHHHHHHhh---hhhcCCCEEEECCCCC
Confidence            889999999985211            1123333331   2222788999999986

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.91  E-value=1.6e-05  Score=74.66  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCC---ccccccCC--CC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQALED--SD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~~--aD   98 (340)
                      +.|+|.|+||+|++|++++..|+..+.  +|+++|.+.  .......+.. .  .++.... +-.   ++.+++++  .|
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~d~~~~~~~~~~~~~d   82 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV-A--DGMQSEIGDIRDQNKLLESIREFQPE   82 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT-T--TTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc-C--CceEEEEccccCHHHHHHHHHhcCCC
Confidence            357999999999999999999998887  999999865  1111111111 1  1222221 111   23345555  89


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        99 iVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +||++||.+...  .......+..|+.....+++.+.+......+|++|.
T Consensus        83 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           83 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             EEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            999999864211  123456678899999999999988753345565554

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.90  E-value=9.9e-06  Score=71.68  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEE-ecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +.++|.|+||+|++|++++..|+..+...+|+++|.++....  ++..... .-+... +...++.++++++|+||+++|
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD--EEAYKNV-NQEVVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC--SGGGGGC-EEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcc--ccccCCc-eEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence            346999999999999999999998886558999998752100  0000000 011111 112345677889999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      .... +....+++..|......+++.+.+.... .+|++|.
T Consensus        94 ~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS  132 (242)
T 2bka_A           94 TTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSS  132 (242)
T ss_dssp             CCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             cccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEcc
Confidence            6421 1123456677888888999888876533 5555554

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.88  E-value=4.3e-05  Score=66.05  Aligned_cols=106  Identities=12%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec----CCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVi~~  103 (340)
                      ++||.|+||+|++|++++..|+..+...+|++++.++..      .+    .++.....    ..++.+++  +|+||++
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~~----~~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EH----PRLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CC----TTEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------cC----CCceEEeccccCHHHHHHhh--hcEEEEC
Confidence            369999999999999999999988865589999876532      11    12222111    12333444  8999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +|..........+++..|......+++.+.+.... .+|++|.
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss  114 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSA  114 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECC
Confidence            98653222455667788999999999998876543 4555543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.87  E-value=8.9e-05  Score=72.50  Aligned_cols=107  Identities=17%  Similarity=0.206  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC--C--------------CCceEEEEecCCcccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--N--------------TRSEVAGYMGNDQLGQ   92 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~--~--------------~~~~v~~~~~~~d~~~   92 (340)
                      .+|+|||+ |.+|..+|..|+..|+  +|+++|+++.+..  .|...  .              ...+++.+   +|+.+
T Consensus         9 ~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv~--~l~~g~~~~~epgl~~~~~~~~~~g~l~~t---td~~e   80 (446)
T 4a7p_A            9 VRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKIE--LLHQNVMPIYEPGLDALVASNVKAGRLSFT---TDLAE   80 (446)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHH--HHTTTCCSSCCTTHHHHHHHHHHTTCEEEE---SCHHH
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHhcCCCCccCCCHHHHHHhhcccCCEEEE---CCHHH
Confidence            59999998 9999999999999998  9999999873222  12221  0              01346653   57778


Q ss_pred             ccCCCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCc
Q 019519           93 ALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~  150 (340)
                      ++++||+||++.+.|...  |.       -++..+++.++.|.++. ++.++|.- |-|.+.
T Consensus        81 a~~~aDvvii~Vptp~~~~~~~-------~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           81 GVKDADAVFIAVGTPSRRGDGH-------ADLSYVFAAAREIAENLTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             HHTTCSEEEECCCCCBCTTTCC-------BCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTH
T ss_pred             HHhcCCEEEEEcCCCCccccCC-------ccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchH
Confidence            999999999998777542  22       23344555555666554 44444443 344443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.86  E-value=5.8e-05  Score=69.08  Aligned_cols=98  Identities=15%  Similarity=0.178  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |++|||+|||+ |.+|+.++..|...+...+|.++|.++....  .+.......  ..+   +|+++++++||+||++..
T Consensus         4 M~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~~~--~~~---~~~~~~~~~aDvVilavp   75 (290)
T 3b1f_A            4 MEEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSRD--IALERGIVD--EAT---ADFKVFAALADVIILAVP   75 (290)
T ss_dssp             GCCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHHH--HHHHTTSCS--EEE---SCTTTTGGGCSEEEECSC
T ss_pred             cccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHH--HHHHcCCcc--ccc---CCHHHhhcCCCEEEEcCC
Confidence            45689999997 9999999998887643348999998752211  222211111  122   355677899999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-C-CCcEEEEecCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKY-C-PNAIVNMISNP  147 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~-p~a~viv~tNP  147 (340)
                      .                ....++++.+..+ . ++.+++.++|.
T Consensus        76 ~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           76 I----------------KKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             H----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             H----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence            1                1235566667665 3 56776655553

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=97.85  E-value=3e-05  Score=73.83  Aligned_cols=118  Identities=15%  Similarity=0.116  Sum_probs=73.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH------------------HHHHHhcCCCCceEEEEec-
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG------------------VAADVGHINTRSEVAGYMG-   86 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~------------------~~~dl~~~~~~~~v~~~~~-   86 (340)
                      .++++|.|+||+|++|++++..|+..+.  +|+++|......                  ...++.... ...+..... 
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~D   85 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGD   85 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESC
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECC
Confidence            3568999999999999999999998887  999998753110                  111111000 012222211 


Q ss_pred             CC---ccccccCC--CCEEEEcCCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           87 ND---QLGQALED--SDVVIIPAGVPRKP--GMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        87 ~~---d~~~al~~--aDiVi~~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      -.   ++.+++++  +|+||++||.....  ..+.   ...+..|+.....+++.+.+......+|++|.
T Consensus        86 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS  155 (404)
T 1i24_A           86 ICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  155 (404)
T ss_dssp             TTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            11   23355666  99999999864211  1122   23567899999999999988865335665554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.85  E-value=2.4e-05  Score=72.72  Aligned_cols=80  Identities=11%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             hhhccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc
Q 019519           10 KTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ   89 (340)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d   89 (340)
                      ++..++.+..+...   ++|||+|||+ |.+|..++..|...++  +|.++|+++....  ++....    +..   .++
T Consensus         6 ~~~~~~~~~~~~~~---~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~g----~~~---~~~   70 (310)
T 3doj_A            6 HHHHHSSGLVPRGS---HMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEHG----ASV---CES   70 (310)
T ss_dssp             ------------CC---CSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSS
T ss_pred             cccccccccCcccc---cCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CeE---cCC
Confidence            44555554444333   5689999998 9999999999999988  9999998863222  122211    222   245


Q ss_pred             cccccCCCCEEEEcC
Q 019519           90 LGQALEDSDVVIIPA  104 (340)
Q Consensus        90 ~~~al~~aDiVi~~a  104 (340)
                      +.+++++||+||++.
T Consensus        71 ~~~~~~~aDvvi~~v   85 (310)
T 3doj_A           71 PAEVIKKCKYTIAML   85 (310)
T ss_dssp             HHHHHHHCSEEEECC
T ss_pred             HHHHHHhCCEEEEEc
Confidence            678899999999985

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.85  E-value=0.00013  Score=67.95  Aligned_cols=66  Identities=24%  Similarity=0.346  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+|||+|||+ |.+|..++..|...++  +|.++|+++.  ...++....    +...   +++.+++++||+||++.
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~l~~~g----~~~~---~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPA--RAASLAALG----ATIH---EQARAAARDADIVVSML   95 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CEEE---SSHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHCC----CEee---CCHHHHHhcCCEEEEEC
Confidence            4579999998 9999999999999887  9999998752  222333322    2222   45678899999999985

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=97.84  E-value=4.5e-05  Score=70.26  Aligned_cols=109  Identities=14%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cC---CccccccCC--CCE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALED--SDV   99 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~~--aDi   99 (340)
                      .++++|.|+||+|++|++++..|+..+.  +|+++|.+....   .+       .+.... +-   .++.+++++  .|+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~---~l-------~~~~~~~Dl~d~~~~~~~~~~~~~d~   77 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEAK---LP-------NVEMISLDIMDSQRVKKVISDIKPDY   77 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTCC---CT-------TEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCccc---cc-------eeeEEECCCCCHHHHHHHHHhcCCCE
Confidence            3457999999999999999999998887  999999865211   01       222221 11   123345555  899


Q ss_pred             EEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          100 VIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       100 Vi~~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ||++||....  ........+..|+.....+++.+.+......+|++|.
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS  126 (321)
T 2pk3_A           78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS  126 (321)
T ss_dssp             EEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred             EEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence            9999986431  1234566778899999999999976643455665553

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.84  E-value=4.6e-05  Score=72.60  Aligned_cols=100  Identities=14%  Similarity=0.218  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-------CcceEEEEeCCCc-----HHHHHHHhcCC--------CCceEEEEecC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT-----PGVAADVGHIN--------TRSEVAGYMGN   87 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-------~~~el~L~D~~~~-----~~~~~dl~~~~--------~~~~v~~~~~~   87 (340)
                      +|||+|||+ |.+|+.++..|+..+       .  +|.++|.++.     ....+.-.+..        ....+...   
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~---   94 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAH---   94 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEE---
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEE---
Confidence            469999998 999999999998766       4  8999998764     33322111110        11235543   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----hC-CCcEEEEecCCCC
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK----YC-PNAIVNMISNPVN  149 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~----~~-p~a~viv~tNP~d  149 (340)
                      +|+.+++++||+||++.  |              ...+.++++.+..    +. |+.+++..+|..+
T Consensus        95 ~~~~ea~~~aDvVilav--~--------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           95 SDLASVINDADLLIFIV--P--------------CQYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             SSTHHHHTTCSEEEECC--C--------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             CCHHHHHcCCCEEEEcC--C--------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            45667789999999985  2              1356667777776    44 5788888887654

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.83  E-value=3.4e-05  Score=68.20  Aligned_cols=114  Identities=16%  Similarity=0.087  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag  105 (340)
                      ++++|.|+||+|++|++++..|+..+...+|++++.++..  ..++.. .. .-+.... ...++.++++++|+||+++|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~--~~~~~~-~~-~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG--KEKIGG-EA-DVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH--HHHTTC-CT-TEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc--hhhcCC-Ce-eEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            4679999999999999999999988322389999976421  112211 11 1122111 11245577889999999988


Q ss_pred             CCCC------------CCC---CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          106 VPRK------------PGM---TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       106 ~~~~------------~g~---~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ....            +..   .....+..|+.....+++.+.+.... .+|++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           79 AVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             ccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            5421            110   01134567888889999998877543 455554

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=97.82  E-value=2.3e-05  Score=72.18  Aligned_cols=102  Identities=12%  Similarity=0.102  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~  103 (340)
                      |++|||.|+||+|++|++++..|+..++  ++++++.+..    .|+.+            ..++.++++  ++|+||++
T Consensus         1 M~~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d------------~~~~~~~~~~~~~d~vih~   62 (321)
T 1e6u_A            1 MAKQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLD------------SRAVHDFFASERIDQVYLA   62 (321)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTC------------HHHHHHHHHHHCCSEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccC------------HHHHHHHHHhcCCCEEEEc
Confidence            3457999999999999999999998887  7888775420    11111            123445667  89999999


Q ss_pred             CCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          104 AGVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       104 ag~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      |+.....   .....+.+..|+...+.+++.+.+.... .+|.+|.
T Consensus        63 a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  107 (321)
T 1e6u_A           63 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGS  107 (321)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcc
Confidence            9865311   1234567788999999999999876543 4555543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.82  E-value=4.3e-05  Score=71.14  Aligned_cols=112  Identities=19%  Similarity=0.108  Sum_probs=71.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CC---ccccccCC--CCE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALED--SDV   99 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~~--aDi   99 (340)
                      .++|+|.|+||+|++|++++..|+..+.  +|+++|.+.... ...+...   ..+..... -+   ++.+++++  +|+
T Consensus        19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~   92 (333)
T 2q1w_A           19 SHMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGR-REHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDA   92 (333)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccc-hhhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcE
Confidence            3568999999999999999999998886  999999764110 0011111   12332221 12   23355667  999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ||++||..........+ +..|+.....+++.+.+... ..+|++|
T Consensus        93 vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  136 (333)
T 2q1w_A           93 VVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNV-GRFVYFQ  136 (333)
T ss_dssp             EEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTC-SEEEEEE
T ss_pred             EEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCC-CEEEEEC
Confidence            99999865332122223 77899999999999887643 3455554

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.82  E-value=8.2e-06  Score=74.26  Aligned_cols=106  Identities=12%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCC-CCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALED-SDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~-aDiVi~~  103 (340)
                      |++|||.|+|+ |++|++++..|+..++  +|+.++.+...     +. ... .-+.... ...++.+++++ +|+||++
T Consensus         1 M~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~-~~~-~~~~~Dl~d~~~~~~~~~~~~d~vih~   70 (286)
T 3gpi_A            1 MSLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MP-AGV-QTLIADVTRPDTLASIVHLRPEILVYC   70 (286)
T ss_dssp             -CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CC-TTC-CEEECCTTCGGGCTTGGGGCCSEEEEC
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----cc-cCC-ceEEccCCChHHHHHhhcCCCCEEEEe
Confidence            45689999996 9999999999999887  89999976521     11 110 0111110 11234456676 9999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |+...   .........|+...+.+++.+.+.... .+|.+|
T Consensus        71 a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           71 VAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             HHHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             CCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            87531   122344566888899999988865433 444444

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.82  E-value=8.7e-05  Score=69.76  Aligned_cols=117  Identities=13%  Similarity=0.023  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH---HHHHHHhcCC--CCceEEEEec-CC---ccccccCC--
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN--TRSEVAGYMG-ND---QLGQALED--   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~---~~~~dl~~~~--~~~~v~~~~~-~~---d~~~al~~--   96 (340)
                      |++|.|+||+|++|++++..|+..+.  +|+++|.+...   ....++....  ....+..... -+   ++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            46899999999999999999998886  99999976421   1111111100  0123333221 11   22344554  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCC--cEEEEecC
Q 019519           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPN--AIVNMISN  146 (340)
Q Consensus        97 aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~--a~viv~tN  146 (340)
                      .|+||++||.....  .......+..|+.....+++.+.+...+  ..+|++|.
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS  132 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAST  132 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence            69999999864322  2334566778999999999999887642  56666653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.81  E-value=5.4e-05  Score=68.37  Aligned_cols=95  Identities=15%  Similarity=0.231  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcce-EEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~e-l~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ++|||+|||+ |.+|+.++..|...++  + +.++|.++...  ..+....   .+..+   ++++++++++|+||++. 
T Consensus         9 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~~--~~~~~~~---g~~~~---~~~~~~~~~~Dvvi~av-   76 (266)
T 3d1l_A            9 EDTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEESA--RELAQKV---EAEYT---TDLAEVNPYAKLYIVSL-   76 (266)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHHH--HHHHHHT---TCEEE---SCGGGSCSCCSEEEECC-
T ss_pred             CCCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHH--HHHHHHc---CCcee---CCHHHHhcCCCEEEEec-
Confidence            3579999998 9999999999887775  5 89999875221  1222111   12222   35667789999999985 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                       |            .+  .+.++++.+.... ++.+++..++-.
T Consensus        77 -~------------~~--~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           77 -K------------DS--AFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             -C------------HH--HHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             -C------------HH--HHHHHHHHHHhhcCCCcEEEECCCCC
Confidence             2            11  1356666776655 677777776644

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.81  E-value=6.6e-05  Score=73.84  Aligned_cols=115  Identities=17%  Similarity=0.233  Sum_probs=70.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhC--CCcceEEEEeCCCcHHHHHHHhcCC---------------CCceEEEEecCCcc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHIN---------------TRSEVAGYMGNDQL   90 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~--~~~~el~L~D~~~~~~~~~dl~~~~---------------~~~~v~~~~~~~d~   90 (340)
                      +|||+|||+ |.||..++..|+..  ++  +|+++|+++.+..  .+....               ....+..+   +|+
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~~~--~l~~g~~~i~e~~l~~~~~~~~~~~~~~t---~~~   76 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESRIN--AWNSPTLPIYEPGLKEVVESCRGKNLFFS---TNI   76 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHHH--HHTSSSCSSCCTTHHHHHHHHBTTTEEEE---SCH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHHH--HHhCCCCCcCCCCHHHHHHHhhcCCEEEE---CCH
Confidence            579999998 99999999999887  55  8999999752211  222110               00134443   466


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCcc
Q 019519           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNST  151 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~  151 (340)
                      .+++++||+||++...|........+ -..++..+.+.++.+.++. |+.+|+.. |+|.+..
T Consensus        77 ~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~  138 (467)
T 2q3e_A           77 DDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAA  138 (467)
T ss_dssp             HHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHH
T ss_pred             HHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHH
Confidence            67889999999998666432211000 0123345556666666654 45555443 6676653

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.81  E-value=6.6e-05  Score=69.68  Aligned_cols=109  Identities=16%  Similarity=0.107  Sum_probs=72.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CCc----cccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ----LGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~al~~aDiVi~  102 (340)
                      |||.|+||+|++|++++..|+.. ++  +|+++|.+.....  ++..   ...+..... -+|    +.++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGG--GGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchHH--Hhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999887 66  8999998752111  1111   123333221 112    3356678999999


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +||.....  .....+.+..|+.....+++.+.+..  ..+|++|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            99864311  12344567788888899999888765  46665554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.81  E-value=3.5e-05  Score=73.06  Aligned_cols=172  Identities=13%  Similarity=0.050  Sum_probs=96.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-C---CccccccCCCCEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDVV  100 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDiV  100 (340)
                      +++|||.|+||+|++|++++..|+..+ .  +|+++|.+..... ..+..   ...+..... -   .++.++++++|+|
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~V  103 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYV  103 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEE
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEE
Confidence            356799999999999999999999888 6  9999987642100 01110   123433321 1   2244677899999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHH--HhC---CC-CCCceE
Q 019519          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFK--KAG---TY-NEKKLF  171 (340)
Q Consensus       101 i~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~--~sg---~~-~~~kvi  171 (340)
                      |++|+.....  .....+.+..|+.....+++.+.+. ... .+|++|... +....-.....  ...   .. .+...+
T Consensus       104 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y  181 (377)
T 2q1s_A          104 FHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPY  181 (377)
T ss_dssp             EECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC---------------CCCCCCCSSCCCSHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHH-HcCCCCCCCcCcccccccccccCCCCch
Confidence            9999864211  1234567788999999999998876 333 455454321 11000000000  000   01 233344


Q ss_pred             eccchhHHHHHHHHHHHcCCCCCCCc-eeEEEecC
Q 019519          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (340)
Q Consensus       172 G~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (340)
                      |.+.....++-..+++..|++..-++ +.++|...
T Consensus       182 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          182 SMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            54444444455555566677655555 35677543

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=97.80  E-value=1.3e-05  Score=74.17  Aligned_cols=109  Identities=15%  Similarity=0.037  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCC---ccccccC--CCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQALE--DSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~--~aDiVi  101 (340)
                      ||||.|+||+|++|++++..|+..+.  +|+++|.+..... ..+..     .+.... +-+   ++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            57999999999999999999998886  8999987541100 11111     111111 111   2335566  899999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++|+.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  117 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSS  117 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeC
Confidence            999864311  1234566788999999999998876543 455454

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=97.79  E-value=9e-06  Score=74.74  Aligned_cols=109  Identities=18%  Similarity=0.122  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +++||.|+||+|++|++++..|+..++  +|+.+|.....  .....+.+......+..      ...++.++|+||++|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECC
Confidence            467999999999999999999999887  89999876420  00000110000011111      123345999999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       105 g~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +.....  .....+.+. |+...+.+++.+.+.+.. .+|++|
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~S  118 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGS  118 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEec
Confidence            864310  111122345 999999999999988744 444443

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=97.79  E-value=6.5e-05  Score=73.94  Aligned_cols=117  Identities=16%  Similarity=0.120  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHH-HHHHhcCCC--------------CceEEEEecC-C-
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGV-AADVGHINT--------------RSEVAGYMGN-D-   88 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~-~~dl~~~~~--------------~~~v~~~~~~-~-   88 (340)
                      ++++|.|+||+|++|+.++..|+..+. ..+|++++....... ...+.+...              ..++....+. + 
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~  151 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSE  151 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCC
Confidence            568999999999999999999987722 139999998762211 111211110              1234443321 1 


Q ss_pred             --------ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           89 --------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        89 --------d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                              ++.+.++++|+||++|+....  ....+.+..|+.....+++.+.+...+.++.+.|
T Consensus       152 ~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          152 PDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             GGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             cccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence                    234556799999999986533  2223456789999999999998766555554444

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.78  E-value=2.9e-05  Score=69.87  Aligned_cols=93  Identities=17%  Similarity=0.284  Sum_probs=65.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCc--ceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~--~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |++|||+|||+ |.+|+.++..|...+..  .+|.++|.++..          .  .+..   .++..+++++||+||++
T Consensus         2 m~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~----------~--g~~~---~~~~~~~~~~~D~vi~~   65 (262)
T 2rcy_A            2 MENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN----------T--TLNY---MSSNEELARHCDIIVCA   65 (262)
T ss_dssp             CSSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS----------S--SSEE---CSCHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc----------C--ceEE---eCCHHHHHhcCCEEEEE
Confidence            34679999998 99999999999877621  389999987632          1  1222   23456778999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (340)
                      .- +   .            .+.++++.+..+.++..++..+|.++.
T Consensus        66 v~-~---~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           66 VK-P---D------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             SC-T---T------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             eC-H---H------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            63 1   1            134445556666677788888888775

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.78  E-value=5.3e-05  Score=71.82  Aligned_cols=99  Identities=12%  Similarity=0.300  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHH-HHh-cCC------CCceEEEEecCCccccccCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVG-HIN------TRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~-dl~-~~~------~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +||+|||+ |.+|..++..|...++  +|.++|.++.....+ +.. ...      ....+...   +|+.+++++||+|
T Consensus        16 ~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~aDvV   89 (366)
T 1evy_A           16 NKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT---SDVEKAYNGAEII   89 (366)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE---SCHHHHHTTCSSE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceeee---CCHHHHHcCCCEE
Confidence            39999998 9999999999988876  899999875221111 111 000      11234443   4566778999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HHHhC-C-CcEEEEecCCCC
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSA----IAKYC-P-NAIVNMISNPVN  149 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~----i~~~~-p-~a~viv~tNP~d  149 (340)
                      |++.  |              ...+.++++.    +..+. | +.+++.++|-.+
T Consensus        90 ilav--~--------------~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           90 LFVI--P--------------TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             EECC--C--------------HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             EECC--C--------------hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            9985  2              0123333443    43332 5 677787887654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=97.77  E-value=3.5e-05  Score=71.70  Aligned_cols=114  Identities=20%  Similarity=0.220  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCC-----cceEEEEeCCCcHHHHHHHhcCCCCceEEEEec----CCcccccc-C
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQAL-E   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~-----~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al-~   95 (340)
                      +++|+|.|+||+|++|++++..|+..+.     ..+|+++|.+......      ....++.....    ..++.+++ .
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~   85 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------GFSGAVDARAADLSAPGEAEKLVEA   85 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------TCCSEEEEEECCTTSTTHHHHHHHT
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------ccCCceeEEEcCCCCHHHHHHHHhc
Confidence            4568999999999999999999988771     0289999976521100      01123333221    12233456 4


Q ss_pred             CCCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEec
Q 019519           96 DSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMIS  145 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~t  145 (340)
                      ++|+||++||..... .......+..|+.....+++.+.+..    +...+|++|
T Consensus        86 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           86 RPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             CCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            899999999864310 12344566789988999998888765    234555554

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=97.77  E-value=4.5e-05  Score=70.15  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCC--CCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~--aDiVi~~ag~  106 (340)
                      +||.|+||+|++|++++..|+..++  +|+++|.+....   .    .....+.   ...++.+++++  +|+||++||.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~----~~~~Dl~---d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---K----FEQVNLL---DSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC--
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---C----eEEecCC---CHHHHHHHHHhhCCCEEEECCcc
Confidence            6999999999999999999998886  899998654220   0    1001111   11234556664  8999999986


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ....  .......+..|+.....+++.+.+...  .+|++|
T Consensus        71 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           71 RRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             -----------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            4321  123445667899999999999988753  555554

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.77  E-value=5.6e-06  Score=78.35  Aligned_cols=93  Identities=16%  Similarity=0.209  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||.|+||+|++|++++..|+..+. .+++.+|.+.                     ...++.++++++|+||++|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~-~~v~~~d~~~---------------------d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTD-HHIFEVHRQT---------------------KEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCC-CEEEECCTTC---------------------CHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-CEEEEECCCC---------------------CHHHHHHHhccCCEEEECCcCCC
Confidence            6999999999999999999988764 2788888630                     11234566778999999998654


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ..  ...+.+..|+...+.+++.+++......+|.+|
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            22  122234568888888999888776554555554

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=97.77  E-value=7.5e-05  Score=68.66  Aligned_cols=115  Identities=10%  Similarity=-0.025  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC-CCcH-HHHHHHhcCCC-CceEEEEe----cCCccccccCCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP-GVAADVGHINT-RSEVAGYM----GNDQLGQALEDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~-~~~~-~~~~dl~~~~~-~~~v~~~~----~~~d~~~al~~aDiVi  101 (340)
                      +||.|+||+|++|++++..|+..++  +|+.++. +... .....+..... ..++....    ...++.++++++|+||
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            5899999999999999999999887  8888776 3210 00001111100 01222221    1134556788999999


Q ss_pred             EcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       102 ~~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++|+........ ..+.+..|+.....+++.+.+...-..+|++|
T Consensus        80 h~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           80 HTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             ECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            999643111111 12467889999999999988762123455544

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.76  E-value=2.6e-05  Score=73.19  Aligned_cols=97  Identities=21%  Similarity=0.295  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC---------CceEEEEecCCccccccCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---------RSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~---------~~~v~~~~~~~d~~~al~~   96 (340)
                      |.+|||+|||+ |.+|..++..|...+.  +|.++|.++   ....+.....         ..++..   ++|+ +++++
T Consensus         1 M~~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~   70 (335)
T 3ghy_A            1 MSLTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRA---THDA-AALGE   70 (335)
T ss_dssp             -CCCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEE---ESCH-HHHCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeE---ECCH-HHcCC
Confidence            34689999998 9999999999998887  899999742   1122221110         011222   2354 34799


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                      +|+||++.  |              ...+.++++.+..+- |+..|+.++|.+
T Consensus        71 ~D~Vilav--k--------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           71 QDVVIVAV--K--------------APALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CSEEEECC--C--------------HHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CCEEEEeC--C--------------chhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            99999985  2              123456666666554 688888899995

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.74  E-value=0.00029  Score=65.67  Aligned_cols=68  Identities=19%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCcccc-ccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQ-ALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~-al~~aDiVi~~a  104 (340)
                      .+||+|||+ |.+|.+++..|...++..+|+++|.++. ...+.++   ....  ...   +|+.+ ++++||+||++.
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~---G~~~--~~~---~~~~~~~~~~aDvVilav  102 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---GIID--EGT---TSIAKVEDFSPDFVMLSS  102 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---TSCS--EEE---SCTTGGGGGCCSEEEECS
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC---CCcc--hhc---CCHHHHhhccCCEEEEeC
Confidence            479999997 9999999999998887568999998752 1122221   1111  111   35567 799999999985

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.73  E-value=9.8e-05  Score=68.23  Aligned_cols=67  Identities=16%  Similarity=0.068  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ++|||+|||+ |.+|..++..|...++  +|.++|+++..  ...+.....  .. ..   +++.+++++||+||++.
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~--~~-~~---~~~~e~~~~aDvvi~~v   72 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQA--CANLLAEGA--CG-AA---ASAREFAGVVDALVILV   72 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTTC--SE-EE---SSSTTTTTTCSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHcCC--cc-cc---CCHHHHHhcCCEEEEEC
Confidence            3579999998 9999999999999988  99999987522  222332221  11 11   35578889999999985

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.71  E-value=2.3e-05  Score=71.30  Aligned_cols=97  Identities=22%  Similarity=0.213  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~ag  105 (340)
                      .+||.|+||+|++|++++..|+..+.  +|+.+|.+.     .|+.+            ..++.++++  ++|+||++||
T Consensus        12 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d------------~~~~~~~~~~~~~d~vih~A~   72 (292)
T 1vl0_A           12 HMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITN------------VLAVNKFFNEKKPNVVINCAA   72 (292)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTC------------HHHHHHHHHHHCCSEEEECCC
T ss_pred             cceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCC------------HHHHHHHHHhcCCCEEEECCc
Confidence            47999999999999999999998886  899998652     11111            122345566  7999999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      .....  .....+.+..|+.....+++.+.+...  .+|++|
T Consensus        73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           73 HTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            64311  123456778899999999999988754  555554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.71  E-value=2.1e-05  Score=71.36  Aligned_cols=96  Identities=21%  Similarity=0.237  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~ag~  106 (340)
                      |||.|+||+|++|++++..|+..++  +|+.+|..+     .|+.+            ..++.++++  ++|+||++|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d------------~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITN------------ISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            4899999999999999999998886  899998632     11111            122345555  69999999987


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ....  .......+..|+.....+++.+.+.+.  .+|++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            5322  145667788999999999999998865  455554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.71  E-value=5e-05  Score=70.94  Aligned_cols=101  Identities=16%  Similarity=0.171  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCc--ceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~--~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |.+|||+|||+ |.+|..++..|...+..  .+|.++|.++.......+....    +...   ++..+++++||+||++
T Consensus        20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G----~~~~---~~~~e~~~~aDvVila   91 (322)
T 2izz_A           20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG----VKLT---PHNKETVQHSDVLFLA   91 (322)
T ss_dssp             --CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT----CEEE---SCHHHHHHHCSEEEEC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC----CEEe---CChHHHhccCCEEEEE
Confidence            55689999998 99999999999888731  3899999875301112222211    2222   3446778999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (340)
                      .- |               ..+.++++.+..+. |+.+|+.++|....
T Consensus        92 v~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~~  123 (322)
T 2izz_A           92 VK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVTI  123 (322)
T ss_dssp             SC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred             eC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence            62 1               12344555566554 67788888888763

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.71  E-value=2.9e-05  Score=70.79  Aligned_cols=99  Identities=15%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCC--CCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~--aDiVi~~ag~  106 (340)
                      |||.|+||+|++|++++..|+ .++  +|+.+|.+..      ....    .+.   ...++.+++++  +|+||++++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~------~~~~----D~~---d~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK------EFCG----DFS---NPKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS------SSCC----CTT---CHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc------cccc----cCC---CHHHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999988 776  9999987641      0000    110   01234456665  9999999986


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ...  ......+.+..|+.....+++.+.+...  .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1234566778899999999999987653  555554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.71  E-value=4.4e-05  Score=69.34  Aligned_cols=100  Identities=14%  Similarity=0.059  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe----cCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVi~~  103 (340)
                      |||.|+||+|++|++++..|... +.  +|++++.+....  .++...    .++...    +..++.++++++|+||++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            68999999999999999998876 65  889998765211  112211    122211    112355788999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++....        ...|....+.+++.+++.+.. .++++|
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~-~iv~~S  105 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVA-HIIFIG  105 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            875421        134778888999998887644 344443

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=97.70  E-value=8.4e-05  Score=66.81  Aligned_cols=103  Identities=19%  Similarity=0.209  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec----CCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVi~~a  104 (340)
                      +||.|+||+|++|++++..|+..+.  +|+++|.+....    +.     ..+.....    ..++.++++++|+||+++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~----~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGA----AE-----AHEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCC----CC-----TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccc----cC-----CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            5899999999999999999988875  899999865210    00     11222111    123456788999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |..  ........+..|+.....+++.+.+.... .+|++|
T Consensus        72 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  109 (267)
T 3ay3_A           72 GVS--VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFAS  109 (267)
T ss_dssp             SCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            865  23345667788999999999998876433 455454

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.70  E-value=0.00036  Score=63.41  Aligned_cols=97  Identities=14%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC-CCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVi~~ag~  106 (340)
                      |+||+|||+ |.+|..++..|...++..+|+++|.++....  .+.......  ...   +|+.++++ +||+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~~~--~~~---~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGIID--EGT---TSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTSCS--EEE---SCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH--HHHHCCCcc--ccc---CCHHHHhcCCCCEEEEcCCH
Confidence            469999997 9999999999988775448999998752211  122112111  111   35567888 99999998521


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~  148 (340)
                                  .    ...++++.+..+ .++++|+.++|..
T Consensus        73 ------------~----~~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 ------------R----TFREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             ------------H----HHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             ------------H----HHHHHHHHHHhhCCCCcEEEECCCCc
Confidence                        1    122444445444 3677777666643

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.69  E-value=0.0005  Score=62.27  Aligned_cols=119  Identities=20%  Similarity=0.242  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +.++|.|+||+|.+|..++..|+..+.  +|+++|.+.  ......++.......++.... +-+|.   .+++      
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999887  899999875  222233343322222343332 11222   1222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p-~a~viv~tNP  147 (340)
                       .+.|+||+.||.....   ..+   ....+..|+..    .+.+.+.+++... .+.||+++..
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~  173 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM  173 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcCh
Confidence             2799999999864321   122   23345566666    7777788876653 4677777643

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.67  E-value=0.00023  Score=62.86  Aligned_cols=100  Identities=16%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec----CCccccccCCCCEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiV  100 (340)
                      +.|++|.|+||+|++|+.++..|+..+ .  +|++++.++..     +.... ...+.....    ..++.++++++|+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~-----~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~v   92 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAK-----IHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIV   92 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGG-----SCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhh-----hcccc-cCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence            446789999999999999999999888 5  89999986521     11111 112332221    12345678999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      |+++|.+.      .+      ...+.+++.+++... ..||++|.
T Consensus        93 v~~a~~~~------~~------~~~~~~~~~~~~~~~-~~iV~iSS  125 (236)
T 3qvo_A           93 YANLTGED------LD------IQANSVIAAMKACDV-KRLIFVLS  125 (236)
T ss_dssp             EEECCSTT------HH------HHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             EEcCCCCc------hh------HHHHHHHHHHHHcCC-CEEEEEec
Confidence            99887431      11      124466777776653 35555554

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.67  E-value=0.00023  Score=68.59  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-----HHHHHHhcC-------CCCceEEEEec----CCcc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-----GVAADVGHI-------NTRSEVAGYMG----NDQL   90 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-----~~~~dl~~~-------~~~~~v~~~~~----~~d~   90 (340)
                      ++++|.|+||+|++|+.++..|...+.  +|++++.++..     .....+...       ....++....+    ..++
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            467999999999999999999976665  89999887631     111111110       00112333221    0222


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      . ++.++|+||++|+.... .......+..|+.....+++.+.+  ....+|++|
T Consensus       146 ~-~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~S  196 (427)
T 4f6c_A          146 V-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVS  196 (427)
T ss_dssp             C-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred             C-CcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEC
Confidence            2 57899999999986532 233445677899999999999988  334455454

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.67  E-value=5.2e-05  Score=68.63  Aligned_cols=103  Identities=11%  Similarity=0.069  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC--CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~--~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag  105 (340)
                      |||.|+||+|++|++++..|+..  +.  +|+.++.+.....  ++..... .-+.... ...++.++++++|+||++++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~~-~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQGV-EVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTTC-EEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcCC-eEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            48999999999999999999887  65  8999998752211  1221111 0111110 11235577899999999988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ...  +  .    ..|+...+.+++.+.+.... .+|.+|
T Consensus        76 ~~~--~--~----~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           76 PHY--D--N----TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CCS--C--H----HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CCc--C--c----hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            531  1  1    35888888899988876544 444444

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.67  E-value=8.1e-05  Score=69.38  Aligned_cols=121  Identities=13%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHH---HhcCCCCceEEE--EecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD---VGHINTRSEVAG--YMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~d---l~~~~~~~~v~~--~~~~~d~~~al~~aDiVi~~  103 (340)
                      |||+|+|+ |.+|..++..|...+.  +|.++|.++.+....+   +.... ......  ...++|.+++.+++|+||++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~Gl~~~~~~-~g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDYETVKAKGIRIRSAT-LGDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTHHHHHHHCEEEEETT-TCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChHHHHHhCCcEEeecC-CCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            79999998 9999999999998887  9999998752111111   11101 111111  00113555555599999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe-ccch
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG-VTTL  176 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG-~~~l  176 (340)
                      .-..    .            +.++++.+..+ .++..|+.+.|-.+....+.    +.   +|.+++++ .+..
T Consensus        79 vK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~----~~---~~~~~vl~g~~~~  130 (320)
T 3i83_A           79 IKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEPEVA----AA---FPDNEVISGLAFI  130 (320)
T ss_dssp             CCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHH----HH---STTSCEEEEEEEE
T ss_pred             cCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHH----HH---CCCCcEEEEEEEe
Confidence            5211    1            11223444444 36788888999988664432    33   66667775 3443

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=97.67  E-value=7.9e-05  Score=67.88  Aligned_cols=103  Identities=14%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCc--ceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCC--CCEE
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVV  100 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~--~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~--aDiV  100 (340)
                      ++++|||.|+||+|++|++++..|...+..  .+...+..     ...|+.+            ..++.+++++  +|+|
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~-----~~~D~~d------------~~~~~~~~~~~~~d~V   65 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSS-----KDADLTD------------TAQTRALFEKVQPTHV   65 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCT-----TTCCTTS------------HHHHHHHHHHSCCSEE
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCc-----eecccCC------------HHHHHHHHhhcCCCEE
Confidence            356789999999999999999999987751  01111100     0001110            1223455655  9999


Q ss_pred             EEcCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRK---PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |++|+....   ......+.+..|+...+.+++.+.+...+ .+|.+|
T Consensus        66 ih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~S  112 (319)
T 4b8w_A           66 IHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCL  112 (319)
T ss_dssp             EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEc
Confidence            999986421   12345677889999999999999887644 344443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.66  E-value=0.00017  Score=66.73  Aligned_cols=66  Identities=20%  Similarity=0.241  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .++||+|||+ |.+|..++..|...++  +|.++|+++...  ..+....    +..   .+++.+++++||+||++.
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGKA--AALVAAG----AHL---CESVKAALSASPATIFVL   73 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHH--HHHHHHT----CEE---CSSHHHHHHHSSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEEe
Confidence            4579999998 9999999999999887  899999875221  1222211    122   245678889999999985

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.66  E-value=4.3e-05  Score=71.52  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHH---HHHhcCCCCceEEEEe-cCCccccccC--CC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVA---ADVGHINTRSEVAGYM-GNDQLGQALE--DS   97 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~---~dl~~~~~~~~v~~~~-~~~d~~~al~--~a   97 (340)
                      |.++||.|+||+|++|++++..|+..+.  +|++++.+.  .....   .++..... .-+.... +..++.++++  ++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~v-~~~~~Dl~d~~~l~~~~~~~~~   84 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKGA-IIVYGLINEQEAMEKILKEHEI   84 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTTC-EEEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCCc-EEEEeecCCHHHHHHHHhhCCC
Confidence            3457999999999999999999998886  899999865  11111   12322211 0111110 1123456778  99


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (340)
                      |+||++++..             |+...+.+++.+++.+
T Consensus        85 d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           85 DIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             CEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            9999998753             6666778888888876

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.65  E-value=0.00045  Score=58.57  Aligned_cols=137  Identities=10%  Similarity=0.057  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-Cccccc--cCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQLGQA--LEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d~~~a--l~~aDiVi~~  103 (340)
                      .++|+|+|+ |.+|..++..|... +.  +++++|.++...  ..+...... -+...... ..+.++  ++++|+||++
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~~--~~~~~~g~~-~~~gd~~~~~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEAA--QQHRSEGRN-VISGDATDPDFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHHH--HHHHHTTCC-EEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHHH--HHHHHCCCC-EEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence            469999997 99999999999887 77  899999875221  122222211 12211000 113344  7899999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT  183 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~  183 (340)
                      .+..           ..|.    .++..+++.+|+..++..+|-.+...     .++..|   .+.++.-...-..++..
T Consensus       113 ~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~~~-----~l~~~G---~~~vi~p~~~~a~~l~~  169 (183)
T 3c85_A          113 MPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPDQLE-----GLLESG---VDAAFNIYSEAGSGFAR  169 (183)
T ss_dssp             CSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHHHHH-----HHHHHT---CSEEEEHHHHHHHHHHH
T ss_pred             CCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHcC---CCEEEchHHHHHHHHHH
Confidence            5321           2333    33445666778877776665432221     134445   34555543333334555


Q ss_pred             HHHHHcCCCC
Q 019519          184 FYAGKANVNV  193 (340)
Q Consensus       184 ~la~~l~v~~  193 (340)
                      .+.+.++.+.
T Consensus       170 ~~~~~~~~~~  179 (183)
T 3c85_A          170 HVCKQLEPQF  179 (183)
T ss_dssp             HHHHHHCCCC
T ss_pred             HHHHhcCCcc
Confidence            5555565543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.65  E-value=0.00022  Score=66.43  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC-----CC--CceEEEEecCCccccccCCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-----NT--RSEVAGYMGNDQLGQALEDSD   98 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~-----~~--~~~v~~~~~~~d~~~al~~aD   98 (340)
                      ..++||+|||+ |.+|..++..|...+.  +|.++ .++.......-...     ..  ...+..+   +|. ++++++|
T Consensus        17 ~~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~D   88 (318)
T 3hwr_A           17 FQGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSAS---SDP-SAVQGAD   88 (318)
T ss_dssp             ---CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEE---SCG-GGGTTCS
T ss_pred             ccCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeee---CCH-HHcCCCC
Confidence            45689999998 9999999999998887  89999 65421111110110     00  1122222   454 4578999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus        99 iVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      +||++.-..                -+.++++.+..+. |+.+|+.++|..+....+.    +.   +| +++++
T Consensus        89 ~vilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~----~~---~~-~~vl~  139 (318)
T 3hwr_A           89 LVLFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENADTLR----SL---LE-QEVAA  139 (318)
T ss_dssp             EEEECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHH----HH---CC-SEEEE
T ss_pred             EEEEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHH----HH---cC-CcEEE
Confidence            999985211                2355666676654 6788888999998754332    22   66 67775

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.64  E-value=8.4e-05  Score=69.21  Aligned_cols=113  Identities=19%  Similarity=0.077  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--------HHHHHHHhcCCCCceEEEEe-cCC---ccccccC-
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--------PGVAADVGHINTRSEVAGYM-GND---QLGQALE-   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--------~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-   95 (340)
                      ++|.|+||+|++|++++..|+..+.  +|+++|....        .....++.... ..++.... +-+   ++.++++ 
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHh
Confidence            6999999999999999999998886  8999986421        11122222100 01122211 112   2334556 


Q ss_pred             -CCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           96 -DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                       ++|+||++||.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence             899999999864211  1234567788999999999998876543 445444

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.62  E-value=0.00014  Score=64.37  Aligned_cols=104  Identities=18%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH---HHHHHhcCCCCceEEEEecCCcccccc----CCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQAL----EDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~al----~~aDiVi  101 (340)
                      ++|.|+||+|++|++++..|+..+.  +|+++|.+....   ...|+.+.            .++.+++    .+.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEEE
Confidence            4899999999999999999999887  899999865210   11122211            1122333    3899999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                      ++||.... .......+..|+.....+++.+.+.   ...+.+|++|.-
T Consensus        68 ~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  115 (255)
T 2dkn_A           68 CCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSI  115 (255)
T ss_dssp             ECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             ECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecc
Confidence            99987542 2335566777887777777766654   223566666543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.62  E-value=0.00037  Score=61.79  Aligned_cols=116  Identities=13%  Similarity=0.126  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.++|.|+||+|.+|..++..|+..+.  +|+++|.+..  .....++...   .++.... +-+|   +.+++      
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999887  8999998752  2222233221   1233322 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       ...|+||+.||.....   ..+   ....+..|+.    ..+.+.+.+.+....+.||++|..
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence             2589999999865321   122   2345566766    444555555443322677777654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.62  E-value=0.00015  Score=66.26  Aligned_cols=64  Identities=11%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||+ |.+|..++..|...++  +|+++|+++....  .+.+..    +..   .+++++++++||+||++.
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAALG----AER---AATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEEc
Confidence            69999998 9999999999999887  9999999863221  122211    222   246678889999999985

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.62  E-value=0.00024  Score=67.34  Aligned_cols=114  Identities=15%  Similarity=0.030  Sum_probs=72.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHH-hCCCcceEEEEeCCCcH----------HHHHH-HhcCCC---Cce---EEEEe-cCCc
Q 019519           29 RKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTP----------GVAAD-VGHINT---RSE---VAGYM-GNDQ   89 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~-~~~~~~el~L~D~~~~~----------~~~~d-l~~~~~---~~~---v~~~~-~~~d   89 (340)
                      |+|.|+||+|++|++++..|+ ..+.  +|+++|.....          ....+ +.....   ...   +.... +-+|
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            699999999999999999999 8887  89999875421          11111 111100   001   33222 1122


Q ss_pred             ---cccccC--C-CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           90 ---LGQALE--D-SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        90 ---~~~al~--~-aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                         +.++++  + +|+||++||.....  .......+..|+.....+++.+.+.... .+|++|
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~S  143 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSS  143 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEEC
Confidence               334455  6 99999999864311  1234567788999999999998876544 444443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.62  E-value=0.00011  Score=68.94  Aligned_cols=95  Identities=17%  Similarity=0.238  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC---CCc----eEEEEecCCccccccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---TRS----EVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~---~~~----~v~~~~~~~d~~~al~~aDiV  100 (340)
                      ++||+|||+ |.+|+.++..|...++  +|.++|.++.+..  .+....   ..+    .+...   +|+.+ ++++|+|
T Consensus        14 ~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~~~--~l~~~g~~~~~~~~~~~~~~~---~~~~~-~~~aDvV   84 (335)
T 1z82_A           14 EMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEIVD--LINVSHTSPYVEESKITVRAT---NDLEE-IKKEDIL   84 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHHHSCBTTBTTCCCCSEEE---SCGGG-CCTTEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHHhCCcccCCCCeeeEEEe---CCHHH-hcCCCEE
Confidence            479999998 9999999999998887  9999998642222  222111   000    13332   35556 8999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      |++.-.                ..+.++++.+..  ++..+|.++|..+
T Consensus        85 il~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~  115 (335)
T 1z82_A           85 VIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIE  115 (335)
T ss_dssp             EECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred             EEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCC
Confidence            998521                123334444433  6778888898755

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.61  E-value=5.3e-05  Score=70.95  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCC-----CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-C---CccccccCC---
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNP-----LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALED---   96 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~-----~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~---   96 (340)
                      |||.|+||+|++|++++..|+..+     +  +|+.+|.+.....   +.+    ..++.... -   .++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HED----NPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCS----SCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---ccc----CceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998877     5  8999998752111   111    12222211 1   134466777   


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP  137 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (340)
                      +|+||++|+...   ....+....|+.....+++.+.+.++
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            999999998652   34567788999999999999998743

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.0001  Score=70.64  Aligned_cols=99  Identities=16%  Similarity=0.271  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC------cceEEEEeCCCc---HHHHHHH--hcCC--------CCceEEEEecC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL------VSRLALYDIANT---PGVAADV--GHIN--------TRSEVAGYMGN   87 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~------~~el~L~D~~~~---~~~~~dl--~~~~--------~~~~v~~~~~~   87 (340)
                      +|.||+|+|| |.-|+++|..|...+.      ..+|.|+..++.   +..+..+  .|..        .+.++..+   
T Consensus        33 ~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t---  108 (391)
T 4fgw_A           33 KPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN---  108 (391)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE---
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe---
Confidence            4679999998 9999999998886532      136888876641   2222222  2321        34567764   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (340)
                      +|+.+++++||+||++.  |              ...++++++++..+- ++..+|.++
T Consensus       109 ~dl~~al~~ad~ii~av--P--------------s~~~r~~l~~l~~~~~~~~~iv~~~  151 (391)
T 4fgw_A          109 PDLIDSVKDVDIIVFNI--P--------------HQFLPRICSQLKGHVDSHVRAISCL  151 (391)
T ss_dssp             SCHHHHHTTCSEEEECS--C--------------GGGHHHHHHHHTTTSCTTCEEEECC
T ss_pred             CCHHHHHhcCCEEEEEC--C--------------hhhhHHHHHHhccccCCCceeEEec
Confidence            68899999999999984  3              355677788887765 466666654

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.61  E-value=0.00011  Score=68.20  Aligned_cols=113  Identities=18%  Similarity=0.100  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC--CCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE--DSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~--~aDiV  100 (340)
                      |||.|+||+|++|++++..|+..+.  +|+++|...  ......++.... ..++.... +-+|   +.++++  ++|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999887  899998642  111111121100 01111111 1122   234444  59999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |++||.....  .....+.+..|+.....+++.+++.... .+|++|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999864211  1123456788999999999998877544 444443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.59  E-value=0.0004  Score=63.39  Aligned_cols=93  Identities=20%  Similarity=0.330  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      +|||+|||++|.+|+.++..|...++  +|+++|.++..  ...+....    +..    .+..+++++||+||++..  
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~g----~~~----~~~~~~~~~aDvVi~av~--   76 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGMG----IPL----TDGDGWIDEADVVVLALP--   76 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHTT----CCC----CCSSGGGGTCSEEEECSC--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcC----CCc----CCHHHHhcCCCEEEEcCC--
Confidence            46999999669999999999998887  99999987521  11222211    111    134577899999999852  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                                  .  ..+.++++.+..+. |+.+++..|+..
T Consensus        77 ------------~--~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           77 ------------D--NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             ------------H--HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             ------------c--hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence                        1  11466667776654 577776555543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.59  E-value=0.00087  Score=59.59  Aligned_cols=153  Identities=12%  Similarity=0.128  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +.+++.|+||+|.+|.+++..|+..+.  +|+++|.++  ......++....  .++.... +-+|.   ++.+      
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  899999876  233333443322  2333322 11221   2222      


Q ss_pred             -CCCCEEEEcCCCCC---C---CCCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHH
Q 019519           95 -EDSDVVIIPAGVPR---K---PGMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK  160 (340)
Q Consensus        95 -~~aDiVi~~ag~~~---~---~g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~  160 (340)
                       ...|++|+.||...   .   ...+   ....+..|+.-    .+.+.+.+.+.. .+.||++|.....          
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~----------  152 (253)
T 3qiv_A           84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAAW----------  152 (253)
T ss_dssp             HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC--------------
T ss_pred             cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCcccc----------
Confidence             27899999998731   1   1222   23455667665    666666666553 5677777654421          


Q ss_pred             HhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       161 ~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                           +....++.+......+-+.+++.++  +..|++..+
T Consensus       153 -----~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (253)
T 3qiv_A          153 -----LYSNYYGLAKVGINGLTQQLSRELG--GRNIRINAI  186 (253)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             -----CCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence                 1223455553333446667777764  344544333

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.59  E-value=5.8e-05  Score=69.00  Aligned_cols=108  Identities=14%  Similarity=0.074  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag  105 (340)
                      +++|.|+||+|++|++++..|+..+ .  +|++++.+........+..... .-+.... +..++.++++++|+||++++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~~-~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQGA-EVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCCC-EEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            3689999999999999999988766 6  8999998763222223332211 0111110 11234567899999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      .....      ....|....+.+++.+++.+.. .++..|
T Consensus        82 ~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           82 YWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             HHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             CCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            42110      1245677788888888876543 444443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.59  E-value=0.00045  Score=62.17  Aligned_cols=116  Identities=19%  Similarity=0.127  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-------   94 (340)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|.+..  .....++.......++.... +-+|.   ++++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  8999998752  22223343221112333322 11222   2222       


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHhC--CCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAG----IVKDLCSAIAKYC--PNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~~--p~a~viv~tNP  147 (340)
                      ...|++|+.||...  .......+..|+.    ..+.+.+.+.+..  +.+.||++|..
T Consensus        85 g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           85 GRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             SCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence            24799999998753  2334455666655    5666777776543  25677777654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.58  E-value=0.00056  Score=61.97  Aligned_cols=91  Identities=15%  Similarity=0.140  Sum_probs=60.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||+|||+ |.+|+.++..|...++  +|+++|.++....  .+.......  ...   +|+.++ +++|+||++..   
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g~~~--~~~---~~~~~~-~~~D~vi~av~---   66 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCE--KAVERQLVD--EAG---QDLSLL-QTAKIIFLCTP---   66 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTTSCS--EEE---SCGGGG-TTCSEEEECSC---
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHhCCCCc--ccc---CCHHHh-CCCCEEEEECC---
Confidence            68999997 9999999999998887  8999998752211  122212111  122   355676 99999999852   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                                   ...+.++++.+..+. |+.+|+.++|
T Consensus        67 -------------~~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           67 -------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             -------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             -------------HHHHHHHHHHHHhhCCCCCEEEECCC
Confidence                         113455566666654 5777766544

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.58  E-value=0.00015  Score=74.50  Aligned_cols=116  Identities=18%  Similarity=0.081  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHH---hcCCCCceEEEEe-cCCccccccC--CC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADV---GHINTRSEVAGYM-GNDQLGQALE--DS   97 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl---~~~~~~~~v~~~~-~~~d~~~al~--~a   97 (340)
                      +++++|.|+||+|++|++++..|+..+.  +|+++|.+.  ......++   ..... .-+.... ...++.++++  ++
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~v-~~v~~Dl~d~~~l~~~~~~~~~   85 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHI-PFYEVDLCDRKGLEKVFKEYKI   85 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCC-CEEECCTTCHHHHHHHHHHSCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccCCce-EEEEcCCCCHHHHHHHHHhCCC
Confidence            3457999999999999999999998887  899999764  11111122   11111 1122111 0112334566  89


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        98 DiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |+||++||.....  .....+.+..|+.....+++.+++.... .+|++|
T Consensus        86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~S  134 (699)
T 1z45_A           86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSS  134 (699)
T ss_dssp             CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             CEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            9999999864211  1123456788999999999999877544 444444

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.56  E-value=9.4e-05  Score=67.80  Aligned_cols=97  Identities=15%  Similarity=0.056  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHH---HHhcCCCCceEEEE-ecCCccccccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAA---DVGHINTRSEVAGY-MGNDQLGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~---dl~~~~~~~~v~~~-~~~~d~~~al~~aDiV  100 (340)
                      ++||.|+||+|++|++++..|+..+.  +|++++.+..   .....   ++..... .-+... .+..++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLGA-KLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTTC-EEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHhCCe-EEEeCCCCCHHHHHHHHhCCCEE
Confidence            57999999999999999999998886  8999988741   11111   2222111 011111 0112356788999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (340)
                      |++++.....         .|....+.+++.+.+.+
T Consensus        81 i~~a~~~~~~---------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           81 ISALAGGVLS---------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             EECCCCSSSS---------TTTTTHHHHHHHHHHSC
T ss_pred             EECCccccch---------hhHHHHHHHHHHHHhcC
Confidence            9998754211         14444566777777665

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.55  E-value=0.00019  Score=67.37  Aligned_cols=97  Identities=22%  Similarity=0.307  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHH-HHhc-----CCCC--ceE-EEEecCCccccccCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVGH-----INTR--SEV-AGYMGNDQLGQALED   96 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~-dl~~-----~~~~--~~v-~~~~~~~d~~~al~~   96 (340)
                      |++|||+|||+ |.+|+.++..|...++  +|.++|.++...... +...     ....  .++ ..   ++|+++++++
T Consensus         2 m~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   75 (359)
T 1bg6_A            2 IESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL---TSDIGLAVKD   75 (359)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEE---ESCHHHHHTT
T ss_pred             CCcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEecccccccccccee---cCCHHHHHhc
Confidence            34589999998 9999999999998887  899999875221111 1100     0000  011 11   2456677899


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~  144 (340)
                      +|+||++...+            .    ..++++.+..+. ++.+++..
T Consensus        76 ~D~vi~~v~~~------------~----~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           76 ADVILIVVPAI------------H----HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             CSEEEECSCGG------------G----HHHHHHHHGGGCCTTCEEEES
T ss_pred             CCEEEEeCCch------------H----HHHHHHHHHHhCCCCCEEEEc
Confidence            99999986322            0    134556666554 46656555

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.54  E-value=0.00026  Score=65.19  Aligned_cols=91  Identities=20%  Similarity=0.329  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ++||+|||+ |.+|..++..|...++  +|+++|+++....  .+.+..    +..   .++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----ATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----CEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CEE---cCCHHHHHh-CCEEEEECCCh
Confidence            369999998 9999999999998887  8999999862211  112111    222   246678788 99999985321


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                                     ..++++++.+.... |+.+++..|+
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence                           22344445665554 5666665543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.54  E-value=0.00036  Score=61.57  Aligned_cols=117  Identities=17%  Similarity=0.147  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cccccC---CCCE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQALE---DSDV   99 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~al~---~aDi   99 (340)
                      ++.++|.|+||+|++|++++..|+..+.  +|+++|.+.....  ++.......++.. .+-+|   +.++++   ..|+
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~~~id~   79 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLV--SLAKECPGIEPVC-VDLGDWDATEKALGGIGPVDL   79 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTTCEEEE-CCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhccCCCcEE-ecCCCHHHHHHHHHHcCCCCE
Confidence            4457999999999999999999999887  8999998752111  1111000111111 11122   223333   4799


Q ss_pred             EEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecCC
Q 019519          100 VIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISNP  147 (340)
Q Consensus       100 Vi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNP  147 (340)
                      ||+.||.....   ..+   ....+..|+.....+.+.+.    +....+.||++|..
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 1cyd_A           80 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSM  137 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             EEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcch
Confidence            99999865321   122   23345566666555444443    33435677777653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.54  E-value=0.00065  Score=61.32  Aligned_cols=96  Identities=11%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag~  106 (340)
                      +|||.|+|| |++|++++..|+..++  +|+.++.+.....  .+...    .++... +-+|+.  ++++|+||++++.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRAS----GAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHT----TEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhC----CCeEEEecccccc--cCCCCEEEECCCc
Confidence            479999998 9999999999998887  9999998753222  12211    233222 224443  8899999999985


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (340)
                      ....           .+..+.+.+.+++.+ .-..+|.+|
T Consensus        74 ~~~~-----------~~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           74 DSGG-----------DPVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             BTTB-----------CHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             cccc-----------cHHHHHHHHHHHhhcCCceEEEEee
Confidence            4221           122355666666632 223455444

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.54  E-value=0.0005  Score=61.46  Aligned_cols=113  Identities=17%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.++|.|+||+|.+|..++..|+..+.  +|+++|.+.  ......++.     .++.... +-+|   ++++++     
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  899999876  222233332     1222221 1122   223333     


Q ss_pred             --CCCEEEEcCCCCCCCC---------CC---HHHHHHHHHHHHHHHHHHHHHh----C-----CCcEEEEecC
Q 019519           96 --DSDVVIIPAGVPRKPG---------MT---RDDLFNINAGIVKDLCSAIAKY----C-----PNAIVNMISN  146 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~g---------~~---r~~~~~~N~~i~~~i~~~i~~~----~-----p~a~viv~tN  146 (340)
                        ..|+||+.||......         .+   ....+..|+.....+.+.+..+    .     ..+.||++|.
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS  157 (265)
T 2o23_A           84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTAS  157 (265)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence              8999999998643211         22   2344556666555555555443    1     3466776654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.53  E-value=9.6e-05  Score=57.45  Aligned_cols=71  Identities=25%  Similarity=0.293  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe--cCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVi~~a  104 (340)
                      ++||+|+|+ |.+|+.++..|...+ .  +++++|.++....  .+.+...  ......  ...++.+.++++|+||.++
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~--~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAALA--VLNRMGV--ATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHHH--HHHTTTC--EEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHHH--HHHhCCC--cEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            469999998 999999999999887 5  8999998752221  2222111  121110  1123456778999999998


Q ss_pred             C
Q 019519          105 G  105 (340)
Q Consensus       105 g  105 (340)
                      +
T Consensus        78 ~   78 (118)
T 3ic5_A           78 P   78 (118)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.53  E-value=8e-05  Score=70.33  Aligned_cols=116  Identities=9%  Similarity=-0.016  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH---HHHHHHhcCC---CCceEEEEec-CCc---cccccCC--
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN---TRSEVAGYMG-NDQ---LGQALED--   96 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~---~~~~dl~~~~---~~~~v~~~~~-~~d---~~~al~~--   96 (340)
                      ++|.|+||+|++|++++..|+..+.  +|+++|.+...   ....++....   ....+..... -.|   +.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999998886  99999976421   0011111000   0113333221 122   2344554  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecC
Q 019519           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISN  146 (340)
Q Consensus        97 aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~tN  146 (340)
                      .|+||++||.....  .......+..|+.....+++.+.+...  ...+|++|.
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS  156 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAST  156 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecc
Confidence            59999999864211  123445677899999999999987754  145665553

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.52  E-value=0.00019  Score=57.71  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cccc-cCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-LEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-l~~aDiVi~~  103 (340)
                      +.+|.|+|+ |.+|+.++..|...+.  +++++|.++.  ....+....  ..+. ..+.+|   +.++ ++++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~--~~~~~~~~~--~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYA--THAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHTTTTTC--SEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhC--CEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            458999998 9999999999988886  8999998642  111222211  1211 111122   2222 6789999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .+.+          ...|..    ++..+++.+|+.++...+||.
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~  108 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYY  108 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHH
Confidence            7643          123332    344455567774444455554

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.52  E-value=0.00019  Score=66.76  Aligned_cols=98  Identities=21%  Similarity=0.333  Sum_probs=62.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC--CCcHHHHHHHhcCCC----C---ceEEEEecCCccccccCCCCE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINT----R---SEVAGYMGNDQLGQALEDSDV   99 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~--~~~~~~~~dl~~~~~----~---~~v~~~~~~~d~~~al~~aDi   99 (340)
                      |||+|||+ |.+|+.++..|...++  +|.++|.  ++.  ....+.....    .   ..+.... ..++.++++++|+
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~D~   74 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTE--ILKSISAGREHPRLGVKLNGVEIFW-PEQLEKCLENAEV   74 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHH--HHHHHHTTCCBTTTTBCCCSEEEEC-GGGHHHHHTTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHH--HHHHHHHhCcCcccCccccceEEec-HHhHHHHHhcCCE
Confidence            59999998 9999999999988887  9999998  542  2222332211    0   1233321 0155677899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ||++...+                .+.++++.+....|+.+++.++|..
T Consensus        75 vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           75 VLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             EEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             EEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            99986321                1233444444433677888888876

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.51  E-value=0.00011  Score=67.36  Aligned_cols=65  Identities=12%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+||+|||+ |.+|..++..|...++  +|.++|+++.....  +.+..    +..   .+++.+++++||+||++.
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~--~~~~g----~~~---~~~~~~~~~~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCAP--LVALG----ARQ---ASSPAEVCAACDITIAML   65 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGHH--HHHHT----CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH--HHHCC----Cee---cCCHHHHHHcCCEEEEEc
Confidence            469999997 9999999999998887  89999988632111  11111    222   245678889999999985

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.51  E-value=0.00017  Score=66.93  Aligned_cols=114  Identities=11%  Similarity=0.161  Sum_probs=71.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC-----CCceEEE--EecCCccccccCCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----TRSEVAG--YMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~-----~~~~v~~--~~~~~d~~~al~~aDiVi  101 (340)
                      |||+|||+ |.+|..++..|...+.  +|.++|.++.  .  .+....     .......  ...+++. +++.++|+||
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~--~--~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~vi   74 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY--E--AIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLVL   74 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH--H--HHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH--H--HHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEEE
Confidence            79999998 9999999999998887  8999998752  1  122111     0011110  0011344 4578999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      ++.-.    .            -+.++++.++.+- |+..|+.+.|-.+....+.    +.   +|..++++-
T Consensus        75 lavk~----~------------~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~----~~---~~~~~v~~~  124 (312)
T 3hn2_A           75 VGLKT----F------------ANSRYEELIRPLVEEGTQILTLQNGLGNEEALA----TL---FGAERIIGG  124 (312)
T ss_dssp             ECCCG----G------------GGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHH----HH---TCGGGEEEE
T ss_pred             EecCC----C------------CcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHH----HH---CCCCcEEEE
Confidence            98521    1            1234455566554 6888888999987654432    22   666777654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.50  E-value=0.00037  Score=63.39  Aligned_cols=92  Identities=13%  Similarity=0.088  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ||||+|||+ |.+|+.++..|.. ++  +|.++|.++.....  +....    +...   + +.++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~~--~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKALR--HQEEF----GSEA---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHHH--HHHHH----CCEE---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHHH--HHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh
Confidence            469999998 9999999999988 76  89999987632211  11111    1111   1 357788999999986322


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                                     ..+.++.+.+.... ++.+++..+|..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           11233445554443 577777777754

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.49  E-value=0.00032  Score=62.27  Aligned_cols=116  Identities=16%  Similarity=0.228  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.++|.|+||+|.+|.+++..|+..+.  +|+++|.+..  .....++....  .++.... +-+|   ++++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999887  8999998752  22233343222  1233221 1122   223333     


Q ss_pred             --CCCEEEEcCCCCCCC--CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRKP--GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  147 (340)
                        +.|+||+.||.....  ..+   ....+..|+.....+.+.+    ++. ..+.|+++|..
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~  147 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTITSM  147 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence              899999999864321  222   2344566766655555544    333 34566766643

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.49  E-value=4.9e-05  Score=69.58  Aligned_cols=163  Identities=12%  Similarity=0.060  Sum_probs=91.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC--CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccC--CCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALE--DSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~--~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~--~aDiVi~~  103 (340)
                      |||.|+||+|++|++++..|+..  +.  +|+++|.+......  .....   .+.... ...++.++++  ++|+||++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~--~~~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDV--VNSGP---FEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHH--HHSSC---EEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCccccc--cCCCc---eEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            68999999999999999988876  55  89999986522111  11111   122110 1123345566  89999999


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH----HHHHHHHHHhCCCCCCceEeccchhH
Q 019519          104 AGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV----PIAAEVFKKAGTYNEKKLFGVTTLDV  178 (340)
Q Consensus       104 ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t----~~~~~~~~~sg~~~~~kviG~~~ld~  178 (340)
                      |+..... .....+.+..|+.....+++.+.+.... .+|++|...-.-.    ...   -.... ..+...+|.+....
T Consensus        76 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~---~e~~~-~~~~~~Y~~sK~~~  150 (312)
T 2yy7_A           76 AALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENT---PQYTI-MEPSTVYGISKQAG  150 (312)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSB---CSSCB-CCCCSHHHHHHHHH
T ss_pred             CccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCc---cccCc-CCCCchhHHHHHHH
Confidence            9864211 1234567788999999999999876433 4554442210000    000   00000 12233444443333


Q ss_pred             HHHHHHHHHHcCCCCCCCc-eeEEEe
Q 019519          179 VRAKTFYAGKANVNVAEVN-VPVVGG  203 (340)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~-~~v~G~  203 (340)
                      .++-..+++..|++..-++ ..++|.
T Consensus       151 e~~~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          151 ERWCEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHHHHHhcCCcEEEEeCCeEecC
Confidence            4444555566677655555 456674

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.49  E-value=0.00028  Score=63.03  Aligned_cols=121  Identities=20%  Similarity=0.210  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCC-----CCceEEEEe-cCCc---cccc
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN-----TRSEVAGYM-GNDQ---LGQA   93 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~-----~~~~v~~~~-~~~d---~~~a   93 (340)
                      +++.++|.|+||+|.+|.+++..|+..+.  +|+++|.+..  .....++....     ...++.... +-+|   +.++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   81 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCL   81 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHH
Confidence            34456899999999999999999999887  8999998752  11122221111     001222221 1122   2223


Q ss_pred             cCC-------C-CEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecCC
Q 019519           94 LED-------S-DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISNP  147 (340)
Q Consensus        94 l~~-------a-DiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNP  147 (340)
                      +++       . |+||+.||.....   ..+   ....+..|+.....+.+.+.+    ....+.||++|..
T Consensus        82 ~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  153 (264)
T 2pd6_A           82 LEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSI  153 (264)
T ss_dssp             HHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCT
T ss_pred             HHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECCh
Confidence            333       3 9999999875321   122   234455666555555554443    3325677777653

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.47  E-value=0.00041  Score=68.41  Aligned_cols=104  Identities=13%  Similarity=0.222  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCC---CCEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~---aDiVi~  102 (340)
                      |.++||+|||+ |.+|++++..|+..++  +|.++|.++...  .++........+...   +++++++++   +|+||+
T Consensus        13 ~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~~--~~l~~~~~~~gi~~~---~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           13 MSKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREKT--EEVIAENPGKKLVPY---YTVKEFVESLETPRRILL   84 (480)
T ss_dssp             --CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHH--HHHHHHSTTSCEEEC---SSHHHHHHTBCSSCEEEE
T ss_pred             cCCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHHH--HHHHhhCCCCCeEEe---CCHHHHHhCCCCCCEEEE
Confidence            45679999998 9999999999998887  899999875221  122211000134432   456666666   999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccH
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTV  152 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t  152 (340)
                      +.-.    ++           .++++++.+..+. |+.+||..+|.....+
T Consensus        85 ~Vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t  120 (480)
T 2zyd_A           85 MVKA----GA-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDT  120 (480)
T ss_dssp             CSCS----SS-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHH
T ss_pred             ECCC----HH-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHH
Confidence            8522    11           2334445555554 5778888888764433

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.47  E-value=0.00036  Score=63.95  Aligned_cols=65  Identities=17%  Similarity=0.333  Sum_probs=47.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +|||+|||+ |.+|..++..|...++  +|.++|.++..  ...+.+..    +..   .++++++++++|+||++.
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEAN--VAAVVAQG----AQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEEC
Confidence            479999997 9999999999988887  89999986422  22233221    222   245667788999999985

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.47  E-value=0.00046  Score=61.50  Aligned_cols=117  Identities=18%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.++|.|+||+|.+|++++..|+..+.  +|+++|.+..  .....++....  .++.... +-+|   ++++++     
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQ   87 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999887  8999998752  22233343222  1233322 1122   222332     


Q ss_pred             --CCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                        ..|+||+.||...  .+  ..+.   ...+..|+.....+.+.+.++   ...+.+++++..
T Consensus        88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  151 (260)
T 3awd_A           88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSM  151 (260)
T ss_dssp             HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecc
Confidence              7899999998653  11  2222   344566766555555554432   235666766543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.47  E-value=0.00023  Score=67.56  Aligned_cols=94  Identities=15%  Similarity=0.236  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCC---CEEEEc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS---DVVIIP  103 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a---DiVi~~  103 (340)
                      ++|||+|||. |.+|..++..|...++  +|.++|+++.  ...++....    +..   .++++++++++   |+||++
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~~---~~s~~e~~~~a~~~DvVi~~   88 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IAG---ARSIEEFCAKLVKPRVVWLM   88 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CBC---CSSHHHHHHHSCSSCEEEEC
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CEE---eCCHHHHHhcCCCCCEEEEe
Confidence            4589999997 9999999999999987  9999998752  222333322    111   24567777888   999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                      ...+                .+.++++.+.... ++.+||..||-.
T Consensus        89 vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           89 VPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             SCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             CCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            5211                2334445565554 567777666543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.46  E-value=0.00014  Score=67.04  Aligned_cols=93  Identities=17%  Similarity=0.221  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c---HHHHH---HHhcCCCCceEEEEe-cCCccccccCCCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T---PGVAA---DVGHINTRSEVAGYM-GNDQLGQALEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~---~~~~~---dl~~~~~~~~v~~~~-~~~d~~~al~~aDi   99 (340)
                      +++|.|+||+|++|++++..|+..+.  +|++++.+. .   .....   ++..... .-+.... +..++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~v-~~v~~D~~d~~~l~~a~~~~d~   80 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMGV-TIIEGEMEEHEKMVSVLKQVDI   80 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCSE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCCc-EEEEecCCCHHHHHHHHcCCCE
Confidence            57999999999999999999998886  899998874 1   11111   2222111 0111110 11235678899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (340)
                      ||++++...             ....+.+++.+.+.+
T Consensus        81 vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (321)
T 3c1o_A           81 VISALPFPM-------------ISSQIHIINAIKAAG  104 (321)
T ss_dssp             EEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             EEECCCccc-------------hhhHHHHHHHHHHhC
Confidence            999987542             233455666666665

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.45  E-value=0.0002  Score=65.44  Aligned_cols=77  Identities=19%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-------cHHH-HHHHhcCCCCceEEEEe-cCCccccccCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------TPGV-AADVGHINTRSEVAGYM-GNDQLGQALEDSD   98 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-------~~~~-~~dl~~~~~~~~v~~~~-~~~d~~~al~~aD   98 (340)
                      ++||.|+||+|++|++++..|+..+.  +|+.++.+.       .+.. ..++.+... .-+.... ...++.++++++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v-~~v~~D~~d~~~l~~~~~~~d   78 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLGV-ILLEGDINDHETLVKAIKQVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCCC-EEEEeCCCCHHHHHHHHhCCC
Confidence            56999999999999999999988876  888888874       1111 112222211 0111110 1123557889999


Q ss_pred             EEEEcCCCC
Q 019519           99 VVIIPAGVP  107 (340)
Q Consensus        99 iVi~~ag~~  107 (340)
                      +||++++..
T Consensus        79 ~vi~~a~~~   87 (307)
T 2gas_A           79 IVICAAGRL   87 (307)
T ss_dssp             EEEECSSSS
T ss_pred             EEEECCccc
Confidence            999998764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.45  E-value=0.00018  Score=66.24  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=58.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHH-HHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGV-AADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~-~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag  105 (340)
                      +||.|+||+|++|++++..|+..+.  +|+.++.+.. ... ..++..... .-+.... +..++.++++++|+||++++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~v-~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLGA-IIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCCC-EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            4899999999999999999998886  8899988752 221 222332221 0111111 11245678899999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (340)
                      ...             ....+.+++.+++.+
T Consensus        89 ~~~-------------~~~~~~l~~aa~~~g  106 (318)
T 2r6j_A           89 FPQ-------------ILDQFKILEAIKVAG  106 (318)
T ss_dssp             GGG-------------STTHHHHHHHHHHHC
T ss_pred             hhh-------------hHHHHHHHHHHHhcC
Confidence            532             223355666666665

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=97.45  E-value=8.8e-05  Score=68.09  Aligned_cols=111  Identities=19%  Similarity=0.089  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccC--CCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALE--DSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~--~aDiVi~~ag  105 (340)
                      |||.|+||+|++|++++..|+..+.  +|+++|...... ...+.. .. ..+.... ...++.++++  ++|+||++++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~-~~~~~~-~~-~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATGK-RENVPK-GV-PFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSCC-GGGSCT-TC-CEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcCc-hhhccc-Ce-EEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            5899999999999999999998887  899998743100 001110 00 0111110 0112335566  8999999987


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      .....  .......+..|+.....+++.+.+.... .+|++|
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~S  116 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFAS  116 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            54211  1234456778999999999998876543 445444

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.44  E-value=0.0018  Score=58.14  Aligned_cols=128  Identities=20%  Similarity=0.116  Sum_probs=71.4

Q ss_pred             CccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc-
Q 019519           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL-   90 (340)
Q Consensus        15 ~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~-   90 (340)
                      ...++++|+.. +.++|.|+||+|.+|.+++..|+..|.  +|++.|.+.  ......++....  .++.... +-+|. 
T Consensus        17 ~~~~~~~m~~l-~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   91 (262)
T 3rkr_A           17 IDDDDKHMSSL-SGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSD   91 (262)
T ss_dssp             --------CTT-TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHH
T ss_pred             CCCCcchhhcc-CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHH
Confidence            34444555533 456899999999999999999999987  899999876  233333443322  2333332 11222 


Q ss_pred             --ccc-------cCCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 019519           91 --GQA-------LEDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNPV  148 (340)
Q Consensus        91 --~~a-------l~~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~  148 (340)
                        .++       +...|+||+.||.....    ..+.   ...+..|+.-...+.+.    +.+ ...+.||++|...
T Consensus        92 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~~~g~iv~isS~~  168 (262)
T 3rkr_A           92 AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIA-AKRGHIINISSLA  168 (262)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCCEEEEECSSC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCceEEEEechh
Confidence              122       23589999999873221    1222   33455565554444444    443 3456777776554

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.44  E-value=0.0025  Score=57.73  Aligned_cols=164  Identities=15%  Similarity=0.077  Sum_probs=90.4

Q ss_pred             CCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEe-cCCcc---cccc
Q 019519           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYM-GNDQL---GQAL   94 (340)
Q Consensus        22 ~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d~---~~al   94 (340)
                      |..+.+.+++.|+||+|.+|.+++..|+..|.  +|+++|.++  ......++..... ..++.... +-+|.   ++++
T Consensus         5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~   82 (281)
T 3svt_A            5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAV   82 (281)
T ss_dssp             ---CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHH
T ss_pred             CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHH
Confidence            33344557899999999999999999999987  899999876  2333445544321 11344332 11222   1222


Q ss_pred             -------CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHH
Q 019519           95 -------EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAE  157 (340)
Q Consensus        95 -------~~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~  157 (340)
                             ...|++|+.||.....    ..+.   ...+..|+.-...+++.+..+   ...+.||++|....        
T Consensus        83 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~--------  154 (281)
T 3svt_A           83 DAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAA--------  154 (281)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHH--------
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHH--------
Confidence                   2679999999863221    2222   334556766555555444332   34567777764221        


Q ss_pred             HHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       158 ~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                         ..+ .+..-.++.+......+-+.++..++  +..|++-.+
T Consensus       155 ---~~~-~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  192 (281)
T 3svt_A          155 ---SNT-HRWFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSI  192 (281)
T ss_dssp             ---HSC-CTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ---cCC-CCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence               222 33333444433333345666777664  344554444

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.44  E-value=6.8e-05  Score=70.97  Aligned_cols=116  Identities=12%  Similarity=-0.027  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC-----CCc-eEEEEec-CCc---cccccCC--
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----TRS-EVAGYMG-NDQ---LGQALED--   96 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~-----~~~-~v~~~~~-~~d---~~~al~~--   96 (340)
                      ++|.|+||+|++|++++..|+..+.  +|+++|.+........+.+..     ... .+..... -+|   +.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999998887  899999764210000011110     001 3333221 122   3345554  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC----CcEEEEecC
Q 019519           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP----NAIVNMISN  146 (340)
Q Consensus        97 aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p----~a~viv~tN  146 (340)
                      .|+||++||.....  .......+..|+.....+++.+.+...    .+.+|++|.
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS  162 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS  162 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCc
Confidence            59999999864311  123445667788888888888877642    346666553

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.43  E-value=0.00031  Score=64.29  Aligned_cols=65  Identities=23%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |||+|||+ |.+|..++..|...++  +|.++|.++...  ..+....    +..   .+++.++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAI--ADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            69999997 9999999999988887  899999875221  1222211    222   2456677899999999863

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.43  E-value=0.00075  Score=53.93  Aligned_cols=71  Identities=20%  Similarity=0.248  Sum_probs=44.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcc---c-cccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL---G-QALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~-~al~~aDiVi~~  103 (340)
                      .|||+|+|+ |.+|+.++..|...+.  +++++|.++..  ...+.... ...+.. ...++.   . ..++++|+||++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~~-~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVIN-GDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEEE-SCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcEEEE-cCCCCHHHHHHcCcccCCEEEEe
Confidence            479999998 9999999999998886  89999987522  11222110 111111 111121   1 236899999998


Q ss_pred             CC
Q 019519          104 AG  105 (340)
Q Consensus       104 ag  105 (340)
                      .+
T Consensus        77 ~~   78 (140)
T 1lss_A           77 TG   78 (140)
T ss_dssp             CS
T ss_pred             eC
Confidence            63

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.42  E-value=0.00025  Score=63.45  Aligned_cols=117  Identities=15%  Similarity=0.094  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHh-CCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~-~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      ++++|.|+||+|++|++++..|+. .+.  +|+++|.+.  ......++.....  ++.... +-+|   +.++++    
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcCC--eeEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998 887  899999875  2223334433221  222221 1122   222233    


Q ss_pred             ---CCCEEEEcCCCCCCCC--CC----HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           96 ---DSDVVIIPAGVPRKPG--MT----RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~g--~~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                         +.|+||+.||......  ..    ....+..|+.....+.+.+.++. +.+.||++|..
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~  140 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  140 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence               7899999998653221  11    23456778888888888887664 34567766643

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.42  E-value=0.00058  Score=67.34  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC-CCCceEEEEecCCccccccC---CCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGYMGNDQLGQALE---DSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~al~---~aDiVi  101 (340)
                      +.++||+|||. |.+|.+++..|...++  +|.++|+++....  ++... ....++...   .+++++++   ++|+||
T Consensus         2 ~~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g~~g~~i~~~---~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            2 NAQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVD--DFLANEAKGTKVVGA---QSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             -CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHHTTTTTSSCEEC---SSHHHHHHTBCSSCEEE
T ss_pred             CCCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHhcccCCCceecc---CCHHHHHhhccCCCEEE
Confidence            35689999998 9999999999999987  9999999863222  22211 111233332   34455444   699999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                      ++.-.+               +.++++++.+..+- |+.+||..+|-.
T Consensus        74 l~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           74 LLVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             ECSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             EecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            985221               12334445555554 677887777654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.42  E-value=0.00025  Score=63.66  Aligned_cols=115  Identities=17%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+..  .....++..     ++.... +-+|   .+++++     
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   79 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEH   79 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  222333321     122211 1122   222333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           96 --DSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                        +.|++|+.||.....   ..+   -...+..|+.    +.+...+.+.+..+.+.||++|...
T Consensus        80 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  144 (259)
T 4e6p_A           80 AGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQA  144 (259)
T ss_dssp             SSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChh
Confidence              899999999974321   122   2334455655    4444555555555567788776543

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.41  E-value=0.00023  Score=70.42  Aligned_cols=112  Identities=15%  Similarity=0.117  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH-----HHHHHhcC-------CCCceEEEEecCCcccc--
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-----VAADVGHI-------NTRSEVAGYMGNDQLGQ--   92 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~-----~~~dl~~~-------~~~~~v~~~~~~~d~~~--   92 (340)
                      .+++|.|+||+|++|++++..|...+.  +|++++......     ....+...       ....++....  .|+.+  
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~--~Dl~d~~  224 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIV--GDFECMD  224 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEE--EBTTBCS
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEe--cCCcccc
Confidence            357999999999999999999966655  899998876311     11111110       0012344432  12222  


Q ss_pred             ---ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           93 ---ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        93 ---al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                         ++.++|+||++|+... .......+...|+...+.+++.+.+ .. ..++.+|
T Consensus       225 ~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~~-~~~v~iS  277 (508)
T 4f6l_B          225 DVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVS  277 (508)
T ss_dssp             SCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-TT-CEEEEEE
T ss_pred             cCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-CC-CcEEEeC
Confidence               5679999999998643 1223344557799999999999987 33 3444443

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.41  E-value=0.0002  Score=66.59  Aligned_cols=70  Identities=16%  Similarity=0.228  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .+|||+|||+ |.+|..++..|...++ .+|.++|++........+....    +..   .+++.+++++||+||++..
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEecC
Confidence            4689999998 9999999999988774 4899999863011111222221    222   2456788899999999863

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.41  E-value=0.0021  Score=57.58  Aligned_cols=121  Identities=12%  Similarity=0.051  Sum_probs=74.3

Q ss_pred             CCCCeEEEEcCCCC--hHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc----
Q 019519           26 VPDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~--VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (340)
                      ++.+++.|+||+|+  +|..++..|+..|.  +|++.|.++ ......++.......++.... +-+|   .++.+    
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK   82 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence            34568999999888  99999999999987  899999876 222233333221111222221 1122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519           95 ---EDSDVVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                         ...|++|+.||....     +  ..+.   ...+..|+.....+.+.+..+- +.+.||++|...
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  150 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLG  150 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence               367999999987531     1  2232   3455677777777777776654 357788777543

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.41  E-value=0.0011  Score=62.37  Aligned_cols=105  Identities=19%  Similarity=0.125  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec--C---CccccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N---DQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~--~---~d~~~al~~aDiVi~  102 (340)
                      +++|.|+||+|++|++++..|+..+.  +|++++.+.......++....   .+.....  -   .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~~---~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhcC---CcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            47999999999999999999988876  899998876322223343221   2222221  1   125567899999998


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                      .++...   .      ..|... +.+++.+.+.. .. .+|.+|...
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~~  115 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMPD  115 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECCC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCcc
Confidence            765321   1      135444 77888887775 33 555566443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.41  E-value=0.00018  Score=65.33  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCc---eEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS---EVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~---~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |||+|||+ |.+|+.++..|...++  +|.++|.++....  ++.......   ......  ++ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~~--~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLTA--ND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEEE--SC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeeee--cC-ccccCCCCEEEEEec
Confidence            69999998 9999999999998887  9999998762110  111111001   111111  23 467889999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNST  151 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~  151 (340)
                      .+    .            +.++++.+..+. |+.+++..+|..+..
T Consensus        73 ~~----~------------~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           73 AW----Q------------VSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             GG----G------------HHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             HH----h------------HHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence            21    0            244555666554 677888889987654

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.40  E-value=0.0024  Score=56.74  Aligned_cols=117  Identities=21%  Similarity=0.284  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcce-EEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcc----cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL----GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~e-l~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~----~~al------   94 (340)
                      +.++|.|+||+|.+|..++..|+..+.  + |+++|.++......++.......++.... +-+|.    ++++      
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            346899999999999999999999886  5 89999876322223333221112333332 11221    1122      


Q ss_pred             -CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh----C--CCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY----C--PNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~----~--p~a~viv~tNP  147 (340)
                       .+.|++|+.||...  .......+..|+.....+.+.+..+    .  +.+.||++|..
T Consensus        82 ~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  139 (254)
T 1sby_A           82 LKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             HSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             cCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence             37899999998642  2344556667776655555554432    1  24677777654

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.40  E-value=0.00035  Score=71.46  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CCc----cccccCCCCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ----LGQALEDSDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~al~~aDiV  100 (340)
                      ++++|.|+||+|++|++++..|+.. ++  +|+++|.+....  .++..   ..++..... -+|    +.++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            5679999999999999999999887 66  899999865211  01111   123333221 122    23456789999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       101 i~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      |++||.....  .....+.+..|+.....+++.+.+..  ..+|++|.
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            9999865321  12345667789999999999998775  56665554

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.40  E-value=0.00049  Score=62.64  Aligned_cols=128  Identities=19%  Similarity=0.153  Sum_probs=68.8

Q ss_pred             ccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc
Q 019519           13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ   89 (340)
Q Consensus        13 ~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d   89 (340)
                      .+..|-.+.....++.+++.|+||+|.+|.+++..|+..|.  +|+++|.++.  .....++..     ++.... +-+|
T Consensus        14 ~~~~g~~sm~~~~l~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d   86 (277)
T 3gvc_A           14 AQTQGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGC-----GAAACRVDVSD   86 (277)
T ss_dssp             -------------CTTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCS-----SCEEEECCTTC
T ss_pred             hccCCCCCCCccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-----cceEEEecCCC
Confidence            35556555443344556899999999999999999999987  8999998752  222333311     111111 1122


Q ss_pred             c---ccc-------cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           90 L---GQA-------LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        90 ~---~~a-------l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                      .   ++.       +...|++|..||.....   ..+.   ...+..|+.-...+.+.+..+   ...+.||++|..
T Consensus        87 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~  163 (277)
T 3gvc_A           87 EQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSL  163 (277)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcch
Confidence            2   122       23789999999874321   2232   334556766544444443322   346777777654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.39  E-value=0.002  Score=58.09  Aligned_cols=119  Identities=19%  Similarity=0.245  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (340)
                      ++.++|.|+||+|.+|..++..|+..|.  +|+++|.++  ......++....  .++.... +-+|   +.+++     
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  899999875  222233343222  1333322 1122   11222     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCCCC
Q 019519           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP~d  149 (340)
                        .+.|+||+.||......   .+   ....+..|+.....    +.+.+.+. ..+.||++|....
T Consensus       105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~  170 (272)
T 1yb1_A          105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAG  170 (272)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-
T ss_pred             HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechhh
Confidence              37899999998753221   11   22445566665444    44444433 4567777766543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.39  E-value=0.00014  Score=63.91  Aligned_cols=93  Identities=15%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      .++||+|||+ |.+|+.++..|...++  +|.++|.++.  ...++....    +...    ++.++++++|+||++...
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~--~~~~~~~~g----~~~~----~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPK--RTARLFPSA----AQVT----FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHH--HHHHHSBTT----SEEE----EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHcC----Ccee----cHHHHHhCCCEEEECCCh
Confidence            3579999997 9999999999988887  8999998642  222333221    2221    346778999999998631


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      .    ..      +.  ++ +    +....++.+++.++|+..
T Consensus        94 ~----~~------~~--v~-~----l~~~~~~~~vv~~s~g~~  119 (215)
T 2vns_A           94 E----HY------SS--LC-S----LSDQLAGKILVDVSNPTE  119 (215)
T ss_dssp             G----GS------GG--GG-G----GHHHHTTCEEEECCCCCH
T ss_pred             H----HH------HH--HH-H----HHHhcCCCEEEEeCCCcc
Confidence            1    10      11  11 1    222236788998999875

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.38  E-value=0.00061  Score=60.88  Aligned_cols=115  Identities=12%  Similarity=0.174  Sum_probs=72.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-------C
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-------D   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-------~   96 (340)
                      .+++.|+||+|.+|.+++..|+..+.  +|++.|.++......++....  .++.... +-+|   ++++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999987  899999876433334444322  1233221 1122   223344       8


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      .|++|+.||.....   ..+   ....+..|+.    ..+.+.+.+++.. .+.||++|..
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  139 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIASV  139 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcCc
Confidence            99999999865321   122   2334566666    6666666666543 4667777654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.38  E-value=0.00015  Score=64.93  Aligned_cols=97  Identities=13%  Similarity=0.274  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCC--cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~--~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +|||+|||+ |.+|..++..|...++  ..+|.++|+++...  .++....   .+..   ..|..+++++||+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~--~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTANL--KNASEKY---GLTT---TTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHHH--HHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHH--HHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-
Confidence            369999997 9999999999988875  35899999875221  1221100   1222   245568889999999986 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                      .|               ..+.++++.+..+. |+.+++..++.+.
T Consensus        72 ~~---------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 KP---------------DLYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             CT---------------TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             CH---------------HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence            22               12344555666554 4666654555554

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.38  E-value=0.00016  Score=65.21  Aligned_cols=100  Identities=11%  Similarity=0.100  Sum_probs=60.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhC--CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~--~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ||.|+||+|++|++++..|+..  +.  +|++++.+.....  ++..... .-+.... ...++.++++++|+||++++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQGI-TVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTTC-EEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCCC-eEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            6899999999999999999887  65  8999998752211  1211111 0111110 112355778999999999875


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ..          ..|+...+.+++.+.+.... .+|++|
T Consensus        76 ~~----------~~~~~~~~~l~~a~~~~~~~-~~v~~S  103 (286)
T 2zcu_A           76 EV----------GQRAPQHRNVINAAKAAGVK-FIAYTS  103 (286)
T ss_dssp             ----------------CHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             Cc----------hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            31          14677788888888877544 344443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.38  E-value=0.00054  Score=55.41  Aligned_cols=70  Identities=14%  Similarity=0.124  Sum_probs=45.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcc---cc-ccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL---GQ-ALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~~-al~~aDiVi~~  103 (340)
                      +++|.|+|+ |.+|++++..|...++  +++++|.++..  ..++.+... .-+.+  +.+|.   .+ .++++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~~-~~~~g--d~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEGF-DAVIA--DPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTTC-EEEEC--CTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCCC-cEEEC--CCCCHHHHHhCCcccCCEEEEe
Confidence            469999998 9999999999998887  89999987522  222222221 11221  11221   11 25789999998


Q ss_pred             CC
Q 019519          104 AG  105 (340)
Q Consensus       104 ag  105 (340)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.37  E-value=0.00013  Score=66.78  Aligned_cols=93  Identities=22%  Similarity=0.192  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc----HHHH---HHHhcCCCCceEEEEe-cCCccccccCCCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVA---ADVGHINTRSEVAGYM-GNDQLGQALEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~----~~~~---~dl~~~~~~~~v~~~~-~~~d~~~al~~aDi   99 (340)
                      ++||.|+||+|++|++++..|+..+.  +|+.++.+..    ....   ..+..... .-+.... +..++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~~v-~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASGA-NIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTTC-EEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhCCC-EEEEeccCCHHHHHHHHcCCCE
Confidence            56999999999999999999998886  8888888641    1111   12222211 0111110 11235577899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (340)
                      ||++++...             ....+.+++.+++.+
T Consensus        81 vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (308)
T 1qyc_A           81 VISTVGSLQ-------------IESQVNIIKAIKEVG  104 (308)
T ss_dssp             EEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             EEECCcchh-------------hhhHHHHHHHHHhcC
Confidence            999987542             222355666666665

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.37  E-value=0.00055  Score=63.06  Aligned_cols=76  Identities=17%  Similarity=0.355  Sum_probs=55.0

Q ss_pred             CeEEEEc-CCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLG-AAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiG-aaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      +||+||| + |.+|.+++..|...++  +|.++|.++..                      +..+++++||+||++.-.+
T Consensus        22 ~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~~----------------------~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           22 HKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCGG
T ss_pred             CEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCccc----------------------CHHHHhcCCCEEEEeCCHH
Confidence            5999999 7 9999999999998887  89999976420                      2356789999999985211


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (340)
                                      .+.++++.+..+. |+++|+.++
T Consensus        77 ----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           77 ----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             ----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             ----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence                            1445556666554 567665543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.37  E-value=0.00082  Score=60.46  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.++|.|+||+|.+|.+++..|+..+.  +|+++|.+..  .....++...   .++.... +-+|   +.++++     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998752  2222233221   1233222 1122   222333     


Q ss_pred             --CCCEEEEcCCCCCC-----CCCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRK-----PGMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~-----~g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                        +.|+||+.+|....     ...+   ....+..|+.....+.+.+..+   ...+.||++|..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  154 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASI  154 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCG
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeec
Confidence              78999999986432     1122   2345566776666666555543   235677777643

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.37  E-value=0.00067  Score=61.35  Aligned_cols=121  Identities=22%  Similarity=0.270  Sum_probs=70.9

Q ss_pred             CCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccccccC---
Q 019519           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLGQALE---   95 (340)
Q Consensus        22 ~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~---   95 (340)
                      |...++.+++.|+||+|.+|.+++..|+..|.  +|++.|.++  ......++....  ..+.... ...+.++.++   
T Consensus         5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~Dv~~~~~v~~~~~~~~   80 (271)
T 3tzq_B            5 MTAELENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGRGA--VHHVVDLTNEVSVRALIDFTI   80 (271)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCTTC--EEEECCTTCHHHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCCCe--EEEECCCCCHHHHHHHHHHHH
Confidence            33344556899999999999999999999987  899999886  233333342111  0111100 0011222233   


Q ss_pred             ----CCCEEEEcCCCCCC-C----CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 019519           96 ----DSDVVIIPAGVPRK-P----GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ----~aDiVi~~ag~~~~-~----g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  147 (340)
                          ..|++|+.||.... .    ..+   ....+..|+.-...+++.+    .+. ..+.||++|..
T Consensus        81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~  147 (271)
T 3tzq_B           81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSA  147 (271)
T ss_dssp             HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCH
Confidence                78999999997522 1    122   2345566766555555544    433 45677777654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.36  E-value=0.00066  Score=65.67  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=84.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---ccc-ccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQ-ALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~-al~~aDiVi~~  103 (340)
                      .++|.|+|+ |.+|+.++..|...++  +++++|.++..  +..+..... .-+.+.  .++   +++ .+++||+||++
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g~-~vi~GD--at~~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFGM-KVFYGD--ATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTTC-CCEESC--TTCHHHHHHTTTTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCCC-eEEEcC--CCCHHHHHhcCCCccCEEEEC
Confidence            468999998 9999999999998887  89999998622  122222221 112221  122   222 26899999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccchhHHHHHH
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT  183 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~  183 (340)
                      .+.               -..-..++..+++.+|+..||.-++-.+-...     ++..|   .+.|+--+...+.++..
T Consensus        76 ~~~---------------~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~-----L~~~G---ad~Vi~~~~~~a~~la~  132 (413)
T 3l9w_A           76 IDD---------------PQTNLQLTEMVKEHFPHLQIIARARDVDHYIR-----LRQAG---VEKPERETFEGALKTGR  132 (413)
T ss_dssp             CSS---------------HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHH-----HHHTT---CSSCEETTHHHHHHHHH
T ss_pred             CCC---------------hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHH-----HHHCC---CCEEECccHHHHHHHHH
Confidence            632               23334556667778898766665543322211     34455   34566554444555656


Q ss_pred             HHHHHcCCCCCCC
Q 019519          184 FYAGKANVNVAEV  196 (340)
Q Consensus       184 ~la~~l~v~~~~v  196 (340)
                      .+-..+|+++..+
T Consensus       133 ~~L~~lg~~~~~~  145 (413)
T 3l9w_A          133 LALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHTTCCHHHH
T ss_pred             HHHHHcCCCHHHH
Confidence            5666777777665

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.36  E-value=0.00044  Score=64.43  Aligned_cols=66  Identities=21%  Similarity=0.202  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCC-----cHHHHHHHhcCCCCceEEEEecCC-ccccccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYMGND-QLGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~~~~-d~~~al~~aDiV  100 (340)
                      +|||+|||+ |.+|..++..|+..+ +  +|.++|+++     .......+.....     .    + ++.+++++||+|
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g~-----~----~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELGV-----E----PLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTTC-----E----EESSGGGGGGCSEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCCC-----C----CCCHHHHHhcCCEE
Confidence            479999998 999999999999888 6  999999874     1122223332221     1    2 456889999999


Q ss_pred             EEcCC
Q 019519          101 IIPAG  105 (340)
Q Consensus       101 i~~ag  105 (340)
                      |++..
T Consensus        92 i~avp   96 (317)
T 4ezb_A           92 LSLVV   96 (317)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99863

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.36  E-value=0.0003  Score=58.19  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cccc-cC
Q 019519           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-LE   95 (340)
Q Consensus        20 ~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-l~   95 (340)
                      --|+...+.++|+|+|+ |.+|+.++..|...+.  +++++|.++...  ..+.... ...+. ....++   +.++ ++
T Consensus        11 ~~~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~~-g~~~~-~~d~~~~~~l~~~~~~   83 (155)
T 2g1u_A           11 HHMSKKQKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSEF-SGFTV-VGDAAEFETLKECGME   83 (155)
T ss_dssp             ------CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTTC-CSEEE-ESCTTSHHHHHTTTGG
T ss_pred             hhhhcccCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhcC-CCcEE-EecCCCHHHHHHcCcc
Confidence            34555556789999998 9999999999988887  899999875221  1122011 11221 111112   2233 67


Q ss_pred             CCCEEEEcCC
Q 019519           96 DSDVVIIPAG  105 (340)
Q Consensus        96 ~aDiVi~~ag  105 (340)
                      ++|+||.+.+
T Consensus        84 ~ad~Vi~~~~   93 (155)
T 2g1u_A           84 KADMVFAFTN   93 (155)
T ss_dssp             GCSEEEECSS
T ss_pred             cCCEEEEEeC
Confidence            8999999865

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.34  E-value=0.0032  Score=56.48  Aligned_cols=118  Identities=22%  Similarity=0.246  Sum_probs=70.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.++  .+....++.... ..++.... +-+|.   ++.+      
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999987  899999876  233344554432 12333332 11222   2222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~  148 (340)
                       ...|++|+.||.....   ..+..   ..+..|+.-..    .+.+.+.+.. .+.||++|...
T Consensus        86 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~  149 (262)
T 3pk0_A           86 FGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSIT  149 (262)
T ss_dssp             HSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCSB
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEechh
Confidence             2799999999864321   22322   33555655444    4444444433 45666666543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.34  E-value=0.00029  Score=65.23  Aligned_cols=94  Identities=14%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ++||+|||+ |.+|+.++..|...++  +|.++|.++....  .+....    +..   ..++.++++++|+||++...+
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~~DvVi~av~~~   97 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG----ARL---GRTPAEVVSTCDITFACVSDP   97 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT----CEE---CSCHHHHHHHCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC----CEE---cCCHHHHHhcCCEEEEeCCCH
Confidence            479999998 9999999999988887  8999998762221  122111    122   135567789999999986321


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~  148 (340)
                                     ..++++...+    ....++.+++..+|-.
T Consensus        98 ---------------~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~  127 (316)
T 2uyy_A           98 ---------------KAAKDLVLGPSGVLQGIRPGKCYVDMSTVD  127 (316)
T ss_dssp             ---------------HHHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred             ---------------HHHHHHHcCchhHhhcCCCCCEEEECCCCC
Confidence                           1233333332    2234677787787743

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.34  E-value=0.00095  Score=58.92  Aligned_cols=117  Identities=18%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEe-CCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D-~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      .++|.|+||+|.+|++++..|+..+.  +|+++| .++.  .....++....  .++.... +-+|   ++++++     
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999887  899884 4432  22233343222  2333322 1122   222222     


Q ss_pred             --CCCEEEEcCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 019519           96 --DSDVVIIPAGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (340)
                        +.|+||+.||.....      .+.....+..|+.....+.+.+.++   ...+.||++|...
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  144 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIA  144 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChh
Confidence              799999999864311      1223345566766644444444332   1346777776543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.34  E-value=0.0019  Score=57.85  Aligned_cols=118  Identities=9%  Similarity=0.104  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (340)
                      ++.+++.|+||+|.+|.+++..|+..|.  +|+++|.++  ......++....  .++.... +-+|   .++.+     
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDE   79 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  899999876  233334444322  2333322 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCC
Q 019519           95 --EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP  147 (340)
                        ...|++|+.||.....   ..+.   ...+..|+.-..    .+.+.+.+....+.||+++..
T Consensus        80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  144 (257)
T 3imf_A           80 KFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVAT  144 (257)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECch
Confidence              2789999999864321   2222   234455665444    444444445556777777653

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.32  E-value=0.0019  Score=58.94  Aligned_cols=122  Identities=11%  Similarity=0.093  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC---CCceEEEEe-cCCc---cccccC
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYM-GNDQ---LGQALE   95 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~-~~~d---~~~al~   95 (340)
                      .++.++|.|+||+|.+|++++..|+..+.  +|+++|.+.  ......++....   ...++.... +-+|   +.++++
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence            34557999999999999999999999887  899999875  223333443210   112333332 1122   222232


Q ss_pred             -------CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 019519           96 -------DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (340)
Q Consensus        96 -------~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (340)
                             ..|+||+.||.....   ..+.   ...+..|+.....+++.+...   ...+.+|+++...
T Consensus        93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~  161 (303)
T 1yxm_A           93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT  161 (303)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec
Confidence                   589999999854321   1222   334566777666666665432   1246677776543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.32  E-value=0.0017  Score=63.13  Aligned_cols=107  Identities=18%  Similarity=0.237  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC--C--------------CceEEEEecCCcccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--T--------------RSEVAGYMGNDQLGQ   92 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~--~--------------~~~v~~~~~~~d~~~   92 (340)
                      .|.+|||. |.||..+|..|+..|+  +|+.+|+++.+  +..|....  .              ..++..+   +|   
T Consensus        12 ~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~k--v~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t---td---   80 (431)
T 3ojo_A           12 SKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQT--IDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS---TT---   80 (431)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE---SS---
T ss_pred             CccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHhhcccCceEEe---Cc---
Confidence            59999998 9999999999999998  99999998622  22233211  0              2345553   33   


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCcc
Q 019519           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNST  151 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~  151 (340)
                       +++||+||++.+.|...+..+    ..++..++..++.|.++- |..+||.- |-|.+..
T Consensus        81 -~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt  136 (431)
T 3ojo_A           81 -PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPKTM  136 (431)
T ss_dssp             -CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHH
T ss_pred             -hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHH
Confidence             468999999987775332000    122334444455565554 34433322 4444443

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.32  E-value=0.00065  Score=60.30  Aligned_cols=114  Identities=15%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---ccc---cCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA---LEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a---l~~a   97 (340)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|.++.  .....++..     ++.... +-+|.   .+.   +.+.
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCCC
Confidence            457999999999999999999999987  8999998752  222223322     222211 11221   122   2378


Q ss_pred             CEEEEcCCCCCCC------CCCHHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCC
Q 019519           98 DVVIIPAGVPRKP------GMTRDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        98 DiVi~~ag~~~~~------g~~r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~  148 (340)
                      |++|+.||.....      .+.....+..|+.-...+    .+.+.+. ..+.||++|...
T Consensus        86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~  145 (249)
T 3f9i_A           86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIV  145 (249)
T ss_dssp             SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCC
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHH
Confidence            9999999864311      123345556665554444    4444433 456777777654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.32  E-value=0.00022  Score=65.14  Aligned_cols=64  Identities=17%  Similarity=0.260  Sum_probs=45.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ||||+|||+ |.+|+.++..|...++  +|.++| ++....  .+....    +..   .+++.++++++|+||++.
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            3 AMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AVN---VETARQVTEFADIIFIMV   66 (295)
T ss_dssp             -CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CBC---CSSHHHHHHTCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Ccc---cCCHHHHHhcCCEEEEEC
Confidence            579999997 9999999999988887  899999 752111  122211    111   245567789999999985

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.32  E-value=0.00072  Score=59.54  Aligned_cols=117  Identities=21%  Similarity=0.152  Sum_probs=68.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCC--CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~--~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      ++++|.|+||+|.+|++++..|+..+  .  +|+++|.+.....  ++.+.. ..++.... +-+|   +.++++     
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~--~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKAT--ELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCH--HHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHH--HHHhcc-CCceEEEEeecCCHHHHHHHHHHHHHh
Confidence            45689999999999999999999888  6  8999998752211  122211 12333322 1122   223333     


Q ss_pred             ----CCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHH----HHHHHHHh------C----CCcEEEEecCCC
Q 019519           96 ----DSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKD----LCSAIAKY------C----PNAIVNMISNPV  148 (340)
Q Consensus        96 ----~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~i~~~----i~~~i~~~------~----p~a~viv~tNP~  148 (340)
                          +.|+||+.||...  .+  ..+.   ...+..|+.....    +.+.+.+.      .    +.+.||++|...
T Consensus        77 ~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  154 (250)
T 1yo6_A           77 VGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL  154 (250)
T ss_dssp             HGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred             cCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCc
Confidence                8999999998654  11  1222   2344556544444    44444433      2    146677776543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.32  E-value=0.0009  Score=61.08  Aligned_cols=118  Identities=12%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      ++.++|.|+||+|++|++++..|+..|.  +|+++|.+..  .....++.... ..++.... +-+|   +.++++    
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            4457899999999999999999999987  8999998752  22223332210 11233222 1122   222222    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 019519           96 ---DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tN  146 (340)
                         ..|+||+.||.....   ..+   ....+..|+.....+.+.+.+    ....+.+|++|.
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence               459999999864321   122   234455666655555444433    334567776664

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.32  E-value=0.00096  Score=59.88  Aligned_cols=115  Identities=18%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccc---cc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG---QA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------   93 (340)
                      +.+++.|+||+|.+|..++..|+..+.  +|+++|.+.  ......++....  .++.... +-+|.+   ++       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999987  899999875  223333443322  1233221 112221   11       


Q ss_pred             cCCCCEEEEcCCCC-CC-C--CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVP-RK-P--GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~-~~-~--g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  146 (340)
                      +...|++|+.||.. .. +  ..+.   ...+..|+.-...+    .+.+.+. ..+.||++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  144 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTAS  144 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            23789999999864 21 1  1222   23445565544444    4444433 3467777664

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.31  E-value=0.00064  Score=66.91  Aligned_cols=100  Identities=12%  Similarity=0.110  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCC---CCEEEEc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIP  103 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~---aDiVi~~  103 (340)
                      .++||+|||+ |.+|++++..|...++  +|.++|.++....  ++........+..+   +++++++++   +|+||++
T Consensus         4 ~~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~~~~~gi~~~---~s~~e~v~~l~~aDvVila   75 (474)
T 2iz1_A            4 AQANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSKTE--EVFKEHQDKNLVFT---KTLEEFVGSLEKPRRIMLM   75 (474)
T ss_dssp             TTBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHH--HHHHHTTTSCEEEC---SSHHHHHHTBCSSCEEEEC
T ss_pred             CCCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHHHH--HHHHhCcCCCeEEe---CCHHHHHhhccCCCEEEEE
Confidence            3479999998 9999999999998887  8999998752211  22111001134432   456666655   9999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                      .-.+               ..++++++.+..+. |+.+||..+|...
T Consensus        76 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~~  107 (474)
T 2iz1_A           76 VQAG---------------AATDATIKSLLPLLDIGDILIDGGNTHF  107 (474)
T ss_dssp             CCTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             ccCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence            5221               12333445555554 5677777777653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.31  E-value=0.0016  Score=59.84  Aligned_cols=133  Identities=15%  Similarity=0.173  Sum_probs=73.6

Q ss_pred             hccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--------------cHHHHHHHhcCCC
Q 019519           12 LAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINT   77 (340)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--------------~~~~~~dl~~~~~   77 (340)
                      .-.|+-.+..|+..++.+.+.|+||+|.+|..++..|+..|.  .|+++|.++              ......++.... 
T Consensus        12 ~~~~~~~p~~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   88 (299)
T 3t7c_A           12 LEAQTQGPGSMAGKVEGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-   88 (299)
T ss_dssp             ----------CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-
T ss_pred             eeccCCCCcccccccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC-
Confidence            334444445566556667899999999999999999999987  899999862              112222333222 


Q ss_pred             CceEEEEe-cCCcc---cccc-------CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHH----HHHHHHHHHh
Q 019519           78 RSEVAGYM-GNDQL---GQAL-------EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIV----KDLCSAIAKY  135 (340)
Q Consensus        78 ~~~v~~~~-~~~d~---~~al-------~~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i~----~~i~~~i~~~  135 (340)
                       .++.... +-+|.   ++++       ...|++|..||.....    ..+.   ...+..|+.-.    +.+.+.+.+.
T Consensus        89 -~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  167 (299)
T 3t7c_A           89 -RRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAG  167 (299)
T ss_dssp             -CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred             -CceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence             2333322 11221   1222       3789999999864321    2232   33455565544    4444445544


Q ss_pred             CCCcEEEEecCCC
Q 019519          136 CPNAIVNMISNPV  148 (340)
Q Consensus       136 ~p~a~viv~tNP~  148 (340)
                      ...+.||++|...
T Consensus       168 ~~~g~Iv~isS~~  180 (299)
T 3t7c_A          168 KRGGSIVFTSSIG  180 (299)
T ss_dssp             TSCEEEEEECCGG
T ss_pred             CCCcEEEEECChh
Confidence            4567788776543

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.31  E-value=0.00014  Score=66.85  Aligned_cols=105  Identities=17%  Similarity=0.172  Sum_probs=68.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhC--CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccC--CCCEEEEcC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALE--DSDVVIIPA  104 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~--~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~--~aDiVi~~a  104 (340)
                      ||.|+||+|++|++++..|+..  +.  +|+++|.......       .. ..+.... ...++.++++  ++|+||++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-------~~-~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-------GI-KFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-------TC-CEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-------Cc-eEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            6899999999999999988876  55  7899987642110       10 1121110 0112345566  899999999


Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          105 GVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       105 g~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +..... .......+..|+.....+++.+.+...+ .+|++|
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  111 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPS  111 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEec
Confidence            864211 1234566788999999999999876544 444443

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.31  E-value=0.0004  Score=62.33  Aligned_cols=92  Identities=17%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      |||+|||+ |.+|+.++..|...+ .  +|.++|.++...  ..+....   .+...   +++.+++ ++|+||++.. +
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~~--~~~~~~~---g~~~~---~~~~~~~-~~D~vi~~v~-~   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEKR--ERLEKEL---GVETS---ATLPELH-SDDVLILAVK-P   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHHH--HHHHHHT---CCEEE---SSCCCCC-TTSEEEECSC-H
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHHH--HHHHHhc---CCEEe---CCHHHHh-cCCEEEEEeC-c
Confidence            68999998 999999999998877 5  899999875221  1222111   12222   3456778 9999999862 1


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (340)
                                     ..+.++++.+.. . +.+++.++|....
T Consensus        68 ---------------~~~~~v~~~l~~-~-~~ivv~~~~g~~~   93 (263)
T 1yqg_A           68 ---------------QDMEAACKNIRT-N-GALVLSVAAGLSV   93 (263)
T ss_dssp             ---------------HHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred             ---------------hhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence                           123444444443 3 6677766677664

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.31  E-value=0.00067  Score=55.83  Aligned_cols=104  Identities=10%  Similarity=0.028  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHH-HHHHHhcCCCCceEEEEec-CCccccc-cCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPG-VAADVGHINTRSEVAGYMG-NDQLGQA-LEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~-~~~dl~~~~~~~~v~~~~~-~~d~~~a-l~~aDiVi  101 (340)
                      |+..||.|+|+ |.+|+.++..|...+.  +++++|.+. ... ...+...... .-+.+... ...+.++ +++||.||
T Consensus         1 ~~~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~~~-~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            1 HRKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDNA-DVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTTC-EEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcCCC-eEEEcCCCCHHHHHHcChhhCCEEE
Confidence            34569999998 9999999999988887  899999864 211 1111111111 11211100 0112233 88999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPV  148 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~  148 (340)
                      ++.+..           ..|..    ++..+++.+|+..++. +.||.
T Consensus        77 ~~~~~d-----------~~n~~----~~~~a~~~~~~~~ii~~~~~~~  109 (153)
T 1id1_A           77 ALSDND-----------ADNAF----VVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             ECSSCH-----------HHHHH----HHHHHHHHTSSSCEEEECSSGG
T ss_pred             EecCCh-----------HHHHH----HHHHHHHHCCCCEEEEEECCHH
Confidence            986321           24433    3444555667665554 45554

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.29  E-value=0.00045  Score=61.03  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=68.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      ++.++|.|+||+|.+|++++..|+..+.  +|+++|.+..  .....++.... ..++.... +-+|   +.++++    
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYN   81 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999887  8999998752  22222332100 11232221 1122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 019519           96 ---DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tN  146 (340)
                         +.|+||+.||.....   ..+   ....+..|+....    .+.+.+.+. ..+.||++|.
T Consensus        82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS  144 (248)
T 2pnf_A           82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISS  144 (248)
T ss_dssp             HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECC
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence               899999999875321   122   2345566766664    444444443 3456666653

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.29  E-value=0.00053  Score=61.66  Aligned_cols=113  Identities=17%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|.++.  .....++..     .+.... +-+|   .+++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999987  8999998752  222222321     122211 1122   223343     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                        +.|++|+.||.....   ..+.   ...+..|+...    +.+.+.+.+.. .+.||++|..
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  141 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSI  141 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEeeh
Confidence              899999999865321   1222   23455666554    55566665543 4667777643

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.29  E-value=0.0013  Score=58.88  Aligned_cols=119  Identities=17%  Similarity=0.128  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCC---CcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCC---ccccccC--
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNP---LVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GND---QLGQALE--   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~---~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~--   95 (340)
                      .++++|.|+||+|.+|++++..|+..+   .  +|+++|.+.. .....++....  .++.... +-+   ++.++++  
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~   94 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADI   94 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHH
Confidence            445789999999999999999999887   5  8999998762 11222332211  1233221 111   2223333  


Q ss_pred             -------CCCEEEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHH----HHh------CC----CcEEEEecCC
Q 019519           96 -------DSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAI----AKY------CP----NAIVNMISNP  147 (340)
Q Consensus        96 -------~aDiVi~~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i----~~~------~p----~a~viv~tNP  147 (340)
                             ..|+||+.||.....    ..+   ....+..|+.....+.+.+    .+.      .+    .+.||++|..
T Consensus        95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  174 (267)
T 1sny_A           95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI  174 (267)
T ss_dssp             HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred             HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence                   699999999975411    122   2234555655544444444    333      21    4667777654


Q ss_pred             C
Q 019519          148 V  148 (340)
Q Consensus       148 ~  148 (340)
                      .
T Consensus       175 ~  175 (267)
T 1sny_A          175 L  175 (267)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.29  E-value=0.0014  Score=59.52  Aligned_cols=117  Identities=19%  Similarity=0.165  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQL---GQA-----   93 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-----   93 (340)
                      ++.+++.|+||+|.+|..++..|+..|.  +|++.|.+..   +....++....  .++.... +-+|.   .++     
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~  102 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAV  102 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999987  8999998762   22223333222  1222221 11221   111     


Q ss_pred             --cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 019519           94 --LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (340)
Q Consensus        94 --l~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  146 (340)
                        +...|++|+.||.....   ..+   ....+..|+.....+.+.+..+ ...+.||++|.
T Consensus       103 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          103 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence              24789999999975321   122   2345677888777777777766 24567777764

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.28  E-value=0.0015  Score=58.69  Aligned_cols=118  Identities=20%  Similarity=0.279  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|.++.  .....++.......++.... +-+|   .+++++     
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   89 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   89 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999887  8999998752  22223332211011233221 1122   222232     


Q ss_pred             --CCCEEEEcCCCCCC--C--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRK--P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                        ..|++|+.||....  +  ..+.   ...+..|+.    ..+.+.+.+.+.. .+.||++|..
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  153 (267)
T 1iy8_A           90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASV  153 (267)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcch
Confidence              68999999987533  1  1222   234455653    4456666666553 4567766654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.27  E-value=0.0013  Score=58.67  Aligned_cols=116  Identities=14%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC-CC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      +.++|.|+||+|.+|++++..|+..+.  +|+++|. ++  ......++....  .++.... +-+|   +.+.++    
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   81 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999887  8999998 43  222233333222  2333322 1122   222233    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 019519           96 ---DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tN  146 (340)
                         +.|+||+.||.....   ..+.   ...+..|+....    .+.+.+.+..+.+.||++|.
T Consensus        82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence               789999999865321   1222   234455655444    44444444333567777765

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.27  E-value=0.0022  Score=57.42  Aligned_cols=117  Identities=11%  Similarity=0.112  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.++.  .....++.... ..++.... +-+|   ..++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  22222332210 11232221 1122   222232     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                        +.|++|+.||.....   ..+.   ...+..|+...    +.+.+.+.+.. .+.||++|..
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  145 (263)
T 3ai3_A           83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNASI  145 (263)
T ss_dssp             HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECch
Confidence              799999999865321   1222   23445555544    44444444443 4667766643

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.27  E-value=0.00024  Score=63.61  Aligned_cols=101  Identities=19%  Similarity=0.208  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCC--CCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALED--SDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~--aDiVi~~ag  105 (340)
                      |||.|+||+|++|++++..|+. +.  +|+++|.++...     .      .+.... ...++.+++++  +|+||++||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~------~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----G------GYKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----T------CEECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----C------CceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999999984 54  899999765210     0      122211 11223455665  999999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      .....  .......+..|+.....+++.+.+..  +.+|++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            65321  12345667889999999999998764  3566554

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.27  E-value=0.0018  Score=58.70  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             cCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc-
Q 019519           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ-   89 (340)
Q Consensus        14 ~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d-   89 (340)
                      -+.+...+|.. ++.+++.|+||+|.+|..++..|+..|.  +|+++|.++.  .....++....  .++.... +-+| 
T Consensus         9 ~~~~~~~~m~~-l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~   83 (277)
T 2rhc_B            9 GLVPRGSHMAT-QDSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSV   83 (277)
T ss_dssp             -CCCTTTTTCC-TTSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred             CCCcccccccc-CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCH
Confidence            34444445532 2346899999999999999999999987  8999998752  22233343222  1232221 1122 


Q ss_pred             --ccccc-------CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEecCC
Q 019519           90 --LGQAL-------EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISNP  147 (340)
Q Consensus        90 --~~~al-------~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~tNP  147 (340)
                        .++++       ...|++|..||.....   ..+   ....+..|+.....+++.+.+.     ...+.||++|..
T Consensus        84 ~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~  161 (277)
T 2rhc_B           84 PEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAST  161 (277)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCG
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcc
Confidence              11222       3789999999875321   122   2345566777766666665433     134677777654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.26  E-value=0.0018  Score=58.75  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-------   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-------   95 (340)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++...   .++.... +-+|   .+++++       
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999987  899999875  22223334321   1232221 1122   222333       


Q ss_pred             CCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRK--P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|..||....  +  ..+.   ...+..|+..    .+.+.+.+.+....+.||+++.-
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~  159 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSV  159 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            45999999987532  1  1222   2344556554    55556666555433267766643

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.26  E-value=0.0018  Score=58.01  Aligned_cols=118  Identities=16%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|.++.  .....++.......++.... +-+|   ++++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999887  8999998752  22223333110011233221 1122   223333     


Q ss_pred             -CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           96 -DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       +.|++|+.||.....   ..+   ....+..|+...    +.+.+.+.+.. .+.||++|..
T Consensus        84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  145 (260)
T 2z1n_A           84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGSV  145 (260)
T ss_dssp             TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECch
Confidence             599999999865321   122   233445565544    55555555443 4667766643

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.26  E-value=0.00038  Score=64.47  Aligned_cols=119  Identities=9%  Similarity=0.109  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC----CceEEEEecCCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      +|||+|||+ |.+|..++..|. .+.  +|.+++.++....  .+.....    .........+.+ .++..++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~--~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAA--AIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHH--HHHhCCceEecCCCeeccccccc-ccccCCCCEEEEE
Confidence            379999998 999999999998 776  9999998642111  1211110    000000000011 2457899999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-cchh
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLD  177 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~~ld  177 (340)
                      .-.    .            -+.++++.++...++. |+.+.|-++..-.+     +.  .+|.+++++- +...
T Consensus        75 vK~----~------------~~~~~l~~l~~~~~~~-ivs~~nGi~~~e~l-----~~--~~~~~~vl~g~~~~~  125 (307)
T 3ego_A           75 VKQ----H------------QLQSVFSSLERIGKTN-ILFLQNGMGHIHDL-----KD--WHVGHSIYVGIVEHG  125 (307)
T ss_dssp             CCG----G------------GHHHHHHHTTSSCCCE-EEECCSSSHHHHHH-----HT--CCCSCEEEEEEECCE
T ss_pred             eCH----H------------HHHHHHHHhhcCCCCe-EEEecCCccHHHHH-----HH--hCCCCcEEEEEEeec
Confidence            521    1            1334455665555666 88889988754222     22  2677888754 5433

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.25  E-value=0.002  Score=58.25  Aligned_cols=117  Identities=21%  Similarity=0.223  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--------------cHHHHHHHhcCCCCceEEEEe-cCCcc-
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYM-GNDQL-   90 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d~-   90 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|.+.              ......++....  .++.... +-+|. 
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            446899999999999999999999987  899999861              111222333222  2333322 11222 


Q ss_pred             --cccc-------CCCCEEEEcCCCCCCC-CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           91 --GQAL-------EDSDVVIIPAGVPRKP-GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        91 --~~al-------~~aDiVi~~ag~~~~~-g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                        ++.+       ...|++|+.||..... ..+   ....+..|+.-...+.+.+..+- ..+.||+++..
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence              1222       2789999999874322 122   34567788888888888877664 45677777653

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.25  E-value=0.0033  Score=56.52  Aligned_cols=159  Identities=12%  Similarity=0.128  Sum_probs=88.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---c---cccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---G---QALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~---~al~~a   97 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.++  ......++........+.... +-+|.   +   +.+...
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            346899999999999999999999987  899999876  223333343221112333322 11221   1   223478


Q ss_pred             CEEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 019519           98 DVVIIPAGVPRKP---GMTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        98 DiVi~~ag~~~~~---g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~  167 (340)
                      |++|+.||.....   ..+..   ..+..|+.-    .+.+.+.+.+. ..+.||+++.....           .+ .+.
T Consensus        87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~-----------~~-~~~  153 (267)
T 3t4x_A           87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAI-----------MP-SQE  153 (267)
T ss_dssp             SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGT-----------SC-CTT
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhc-----------cC-CCc
Confidence            9999999975322   12222   335666665    45555555443 45677777654321           11 222


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      .-.++.+......+-+.++..++  +..|++-.+.
T Consensus       154 ~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  186 (267)
T 3t4x_A          154 MAHYSATKTMQLSLSRSLAELTT--GTNVTVNTIM  186 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEe
Confidence            22333322222345666777664  4556554443

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.23  E-value=0.0038  Score=56.59  Aligned_cols=123  Identities=18%  Similarity=0.172  Sum_probs=72.5

Q ss_pred             CCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC------------------cHHHHHHHhcCCCCceEEE
Q 019519           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN------------------TPGVAADVGHINTRSEVAG   83 (340)
Q Consensus        22 ~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~------------------~~~~~~dl~~~~~~~~v~~   83 (340)
                      |....+.+.+.|+||+|.+|..++..|+..|.  .|+++|.+.                  ......++....  .++..
T Consensus         5 m~~~l~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   80 (286)
T 3uve_A            5 MTGRVEGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVT   80 (286)
T ss_dssp             -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEE
T ss_pred             CCcccCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEE
Confidence            44444557899999999999999999999987  899999861                  111222233222  23333


Q ss_pred             Ee-cCCcc---cccc-------CCCCEEEEcCCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEE
Q 019519           84 YM-GNDQL---GQAL-------EDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIV  141 (340)
Q Consensus        84 ~~-~~~d~---~~al-------~~aDiVi~~ag~~~~~g----~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~v  141 (340)
                      .. +-+|.   ++.+       ...|++|+.||......    .+.   ...+..|+.    +.+.+.+.+.+....+.|
T Consensus        81 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~i  160 (286)
T 3uve_A           81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSI  160 (286)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred             EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEE
Confidence            22 11221   2222       37899999999753321    232   234455554    444555555555556778


Q ss_pred             EEecCCC
Q 019519          142 NMISNPV  148 (340)
Q Consensus       142 iv~tNP~  148 (340)
                      |++|...
T Consensus       161 v~isS~~  167 (286)
T 3uve_A          161 ILTSSVG  167 (286)
T ss_dssp             EEECCGG
T ss_pred             EEECchh
Confidence            8776543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.23  E-value=0.0006  Score=61.76  Aligned_cols=112  Identities=17%  Similarity=0.121  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (340)
                      +++|.|+||+|++|++++..|+..|.  +|++.|.+..  .....++.     .++.... +-+|   ..++++      
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAYP-----DRAEAISLDVTDGERIDVVAADVLARY   77 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHCT-----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcc-----CCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999987  8999998762  22221111     1222221 1122   222222      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       +.|+||+.||.....   ..+.   ...+..|+..    .+.+.+.+++.. .+.||++|..
T Consensus        78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~  139 (281)
T 3m1a_A           78 GRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSF  139 (281)
T ss_dssp             SCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCc
Confidence             789999999864211   2222   3345667766    777777776654 4566666653

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.23  E-value=0.0024  Score=57.35  Aligned_cols=126  Identities=14%  Similarity=0.138  Sum_probs=68.1

Q ss_pred             cccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCcc--
Q 019519           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL--   90 (340)
Q Consensus        17 ~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~--   90 (340)
                      +..-+....+..++|.|+||+|.+|..++..|+..|.  ++++.+...   ......++....  .++.... +-+|.  
T Consensus        15 ~~n~~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~   90 (267)
T 4iiu_A           15 TENLYFQSNAMSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQ   90 (267)
T ss_dssp             ----------CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             ChhhhhccccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHH
Confidence            3333333333456899999999999999999999987  776665443   222333343322  1233222 11222  


Q ss_pred             -cccc-------CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 019519           91 -GQAL-------EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        91 -~~al-------~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  146 (340)
                       .+++       ...|++|..||.....   ..+   ....+..|+.....+    ...+.+....+.||++|.
T Consensus        91 ~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  164 (267)
T 4iiu_A           91 CREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS  164 (267)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence             2223       2789999999875422   122   234455665544444    444444456778887764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.23  E-value=0.0011  Score=53.93  Aligned_cols=95  Identities=14%  Similarity=0.183  Sum_probs=59.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cc-cccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~al~~aDiVi~~a  104 (340)
                      .+|.|+|+ |.+|+.++..|...++  +++++|.++..  ...+.+... .-+.+  +.++   ++ ..+.+||+||++.
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g~-~~i~g--d~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERGV-RAVLG--NAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTTC-EEEES--CTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcCC-CEEEC--CCCCHHHHHhcCcccCCEEEEEC
Confidence            59999998 9999999999998887  99999998622  222332221 11221  1122   11 1357999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +..           ..|..+    +..+++.+|+..++.-.|
T Consensus        80 ~~~-----------~~n~~~----~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           80 PNG-----------YEAGEI----VASARAKNPDIEIIARAH  106 (140)
T ss_dssp             SCH-----------HHHHHH----HHHHHHHCSSSEEEEEES
T ss_pred             CCh-----------HHHHHH----HHHHHHHCCCCeEEEEEC
Confidence            422           244333    445666778877666554

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.22  E-value=0.00011  Score=65.71  Aligned_cols=150  Identities=13%  Similarity=0.099  Sum_probs=85.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEE-ecCCccccc-------cCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQA-------LEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~a-------l~~aDiV  100 (340)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++|.++....     .    ..+... ++..+.++.       +...|++
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~-----~----~~~~~d~~d~~~v~~~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNA-----D----HSFTIKDSGEEEIKSVIEKINSKSIKVDTF   91 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTS-----S----EEEECSCSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccc-----c----cceEEEeCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5899999999999999999999987  8999998762110     0    011110 011112222       2356999


Q ss_pred             EEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          101 IIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       101 i~~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      |+.||.....    ..+   -...+..|+.....+.+.+..+- +.+.||++|.....           .+ .+..-.++
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~~-~~~~~~Y~  159 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL-----------NR-TSGMIAYG  159 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG-----------SC-CTTBHHHH
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc-----------cC-CCCCchhH
Confidence            9999864321    111   23455678877777777776553 34677777654321           12 33333333


Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .+......+-+.+++.++..+..|++..+
T Consensus       160 ~sKaa~~~~~~~la~e~~~~~~gi~v~~v  188 (251)
T 3orf_A          160 ATKAATHHIIKDLASENGGLPAGSTSLGI  188 (251)
T ss_dssp             HHHHHHHHHHHHHTSTTSSSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence            33222233455566665433566665554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.22  E-value=0.0018  Score=58.60  Aligned_cols=158  Identities=18%  Similarity=0.216  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCc---ccccc------
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQ---LGQAL------   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d---~~~al------   94 (340)
                      ++.+.+.|+||+|.+|..++..|+..|.  +|++.|.++  .+....++........... .+-+|   .++.+      
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~Dv~d~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGLEGRGAV-LNVNDATAVDALVESTLKE  102 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTCCCEEEE-CCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEE-EeCCCHHHHHHHHHHHHHH
Confidence            4456889999999999999999999987  899999876  2233333332221111111 11122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg  163 (340)
                       ...|++|+.||.....   ..+.   ...+..|+.-...+.+    .+.+. ..+.||++|....           ..+
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~~  170 (270)
T 3ftp_A          103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITSVVG-----------SAG  170 (270)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HHC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhh-----------CCC
Confidence             3789999999965321   2222   2345566655444444    44433 4567777764221           122


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                       .+..-.++.+......+-+.++..++  +..|++..+
T Consensus       171 -~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (270)
T 3ftp_A          171 -NPGQVNYAAAKAGVAGMTRALAREIG--SRGITVNCV  205 (270)
T ss_dssp             -CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence             33333344432222345566666653  344554443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.22  E-value=0.0016  Score=57.74  Aligned_cols=116  Identities=20%  Similarity=0.188  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC-C--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~-~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      +.++|.|+||+|++|++++..|+..+.  +|+++|.+ .  ......++....  .++.... +-+|   ++++++    
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   81 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVA   81 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999887  89999987 4  233333343222  2333322 1122   223333    


Q ss_pred             ---CCCEEEEcCCC-CC-CC--CCC---HHHHHHHHHHHHHHHHH----HHHHh----CCCcEEEEecC
Q 019519           96 ---DSDVVIIPAGV-PR-KP--GMT---RDDLFNINAGIVKDLCS----AIAKY----CPNAIVNMISN  146 (340)
Q Consensus        96 ---~aDiVi~~ag~-~~-~~--g~~---r~~~~~~N~~i~~~i~~----~i~~~----~p~a~viv~tN  146 (340)
                         +.|+||+.||. .. .+  ..+   ....+..|+.....+.+    .+.+.    .+.+.+++++.
T Consensus        82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (258)
T 3afn_B           82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGS  150 (258)
T ss_dssp             HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecc
Confidence               89999999986 32 11  122   22344556554444443    44332    22366766654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.21  E-value=0.00063  Score=60.88  Aligned_cols=113  Identities=15%  Similarity=0.111  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (340)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|.++.  .....++.     .++.... +-+|   .+++++      
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELG-----AAVRFRNADVTNEADATAALAFAKQEF   79 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998762  22222221     1122211 1122   222333      


Q ss_pred             -CCCEEEEcCCCCCCC-------CCC---HHHHHHHHHHHHHHHHHHHHHh---------CCCcEEEEecCC
Q 019519           96 -DSDVVIIPAGVPRKP-------GMT---RDDLFNINAGIVKDLCSAIAKY---------CPNAIVNMISNP  147 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~-------g~~---r~~~~~~N~~i~~~i~~~i~~~---------~p~a~viv~tNP  147 (340)
                       ..|++|+.||.....       ..+   ....+..|+.-...+.+.+..+         ...+.||++|..
T Consensus        80 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~  151 (257)
T 3tpc_A           80 GHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASI  151 (257)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEech
Confidence             899999999865321       122   2334556665555555544433         235677777653

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.21  E-value=0.00059  Score=64.32  Aligned_cols=89  Identities=20%  Similarity=0.286  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCccccccC----CCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALE----DSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~----~aDiVi~  102 (340)
                      .+||+|||+ |.+|.+++..|...++  +|.++|.++. ...+.++   ..    ...   .++.++++    +||+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~~---G~----~~~---~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVDE---GF----DVS---ADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHT---TC----CEE---SCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc---CC----eee---CCHHHHHHhcccCCCEEEE
Confidence            479999997 9999999999998886  8999998752 1222221   11    111   34455554    5799999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +.  |              ...+.++.+.+..+.|+++|+.++
T Consensus        75 av--P--------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AV--P--------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CS--C--------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eC--C--------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            85  2              123344445555566777766554

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.20  E-value=0.0043  Score=56.26  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.+++.|+||+|.+|.+++..|+..+.  +|++.|.++  .+....++.....  ++.... +-+|   .++.++     
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGG--KALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  899999876  3333444443221  122111 1122   223333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                        ..|++|+.||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.||+++..
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~  170 (276)
T 3r1i_A          107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASM  170 (276)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECch
Confidence              789999999975322   1222   223445554    445555555555445777777643

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.19  E-value=0.0022  Score=58.23  Aligned_cols=118  Identities=13%  Similarity=0.108  Sum_probs=71.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++....  .++.... +-+|.   ++++      
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVER   98 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  899999876  233344454332  2333322 11222   1222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHH-----hCCCcEEEEecCCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMISNPV  148 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~-----~~p~a~viv~tNP~  148 (340)
                       ...|++|+.||.....   ..+   -...+..|+.-...+.+.+..     ....+.||++|...
T Consensus        99 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~  164 (279)
T 3sju_A           99 FGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTG  164 (279)
T ss_dssp             HCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGG
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChh
Confidence             3689999999875321   122   233456677666666655433     12356777776543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.18  E-value=0.0012  Score=61.39  Aligned_cols=119  Identities=19%  Similarity=0.158  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|.+..  .....++.......++.... +-+|   +.+++       
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999987  8999998762  22233333221111333322 1122   22223       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHh-----CCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKY-----CPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~-----~p~a~viv~tNP~  148 (340)
                      ...|++|+.||.....   ..+   ....+..|+..    ++.+.+.+.+.     ...+.||++|.-.
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a  154 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA  154 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccc
Confidence            3569999999964321   122   23345555544    44444444443     1356777776543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.18  E-value=0.002  Score=59.20  Aligned_cols=118  Identities=18%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|.++  ......++.....  ++.... +-+|   .++++      
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999987  899999876  2333344443221  232221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                       ...|++|+.||.....   ..+   ....+..|+.    +++.+.+.+.+..+.+.|+++|...
T Consensus       106 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  170 (301)
T 3tjr_A          106 LGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFA  170 (301)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchh
Confidence             2789999999975321   122   2234455554    4444555555555567788776543

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.17  E-value=0.0026  Score=55.93  Aligned_cols=116  Identities=19%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEE-eCCCc--HHHHHHHhcCCCCceEEEEecCCcc---ccc-------cC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAGYMGNDQL---GQA-------LE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~-D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~---~~a-------l~   95 (340)
                      ++|.|+||+|.+|.+++..|+..+.  +|+++ +.+..  .....++.............+-+|.   +++       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4899999999999999999999887  88887 66542  2222333322211111011111221   122       34


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +.|+||+.||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|..
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~  140 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSV  140 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeCh
Confidence            799999999875321   122   23445566666    566666665543 4567766643

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.17  E-value=0.0017  Score=57.15  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCc---cccccC---CCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQ---LGQALE---DSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d---~~~al~---~aD   98 (340)
                      +.++|.|+||+|.+|++++..|+..+.  +|+++|.++..  ....++.  .  ..+.. .+-+|   ++++++   ..|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~--~--~~~~~-~D~~~~~~~~~~~~~~~~id   78 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP--G--IEPVC-VDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST--T--CEEEE-CCTTCHHHHHHHHTTCCCCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC--C--CCEEE-EeCCCHHHHHHHHHHcCCCC
Confidence            346899999999999999999999887  89999986521  1111111  1  11111 11122   223333   589


Q ss_pred             EEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 019519           99 VVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (340)
Q Consensus        99 iVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~  148 (340)
                      +||+.||.....   ..+   ....+..|+.....+.+.+    .+....+.|+++|...
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~  138 (244)
T 3d3w_A           79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQC  138 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred             EEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchh
Confidence            999999865321   112   2345566766654444444    3333356777776543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.17  E-value=0.0017  Score=57.93  Aligned_cols=114  Identities=11%  Similarity=0.009  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCcccccc-------CCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQAL-------EDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al-------~~aDiV  100 (340)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.++. .....++.....  ++... +..+.++.+       ...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYP--QLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCT--TSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCC--cEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4799999999999999999999987  8999998752 111222322111  11111 122333333       378999


Q ss_pred             EEcCCCC-CC-C--CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 019519          101 IIPAGVP-RK-P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       101 i~~ag~~-~~-~--g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      |+.||.. .. +  ..+.   ...+..|+.-.    +.+.+.+.+.. .+.||++|.-.
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~  134 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSAT  134 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCST
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCcc
Confidence            9999975 21 1  1222   23445565544    44444444443 46777776543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.17  E-value=0.002  Score=58.54  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (340)
                      ++.++|.|+||+|.+|..++..|+..|.  +|+++|.++.  .....++.... ..++.... +-+|   .++.+     
T Consensus        26 ~~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~  102 (286)
T 1xu9_A           26 LQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGK  102 (286)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999887  8999998752  22222232211 11333322 1122   11222     


Q ss_pred             --CCCCEEEEc-CCCCCCC--CCCH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCC
Q 019519           95 --EDSDVVIIP-AGVPRKP--GMTR---DDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 --~~aDiVi~~-ag~~~~~--g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP  147 (340)
                        .+.|++|+. +|....+  ..+.   ...+..|+.....+.+    .+.+.  .+.||++|..
T Consensus       103 ~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~g~iv~isS~  165 (286)
T 1xu9_A          103 LMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSL  165 (286)
T ss_dssp             HHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEG
T ss_pred             HcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC--CCEEEEECCc
Confidence              379999998 6764322  1222   2345556554444444    33332  3566666543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.17  E-value=0.0011  Score=59.02  Aligned_cols=154  Identities=15%  Similarity=0.150  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.++.  .....++.     .++.... +-+|   .++.+      
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  22223331     1222211 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg  163 (340)
                       ...|++|+.||.....   ..+.   ...+..|+.-    .+.+.+.+.+..+.+.||+++....           ..+
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~~  146 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTF-----------FAG  146 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHH-----------HHT
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhh-----------ccC
Confidence             3789999999864321   2222   2344556554    4444555776665677777765321           122


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                       .|..-.++.+......+-+.++..++  +..|++-.+
T Consensus       147 -~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  181 (247)
T 3rwb_A          147 -TPNMAAYVAAKGGVIGFTRALATELG--KYNITANAV  181 (247)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence             33333444432222345566666663  344554433

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.17  E-value=0.0032  Score=56.79  Aligned_cols=118  Identities=19%  Similarity=0.272  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--------------cHHHHHHHhcCCCCceEEEEe-cCCc--
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYM-GNDQ--   89 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d--   89 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|.++              ......++....  .++.... +-+|  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            446899999999999999999999987  899999861              111122222211  2333322 1122  


Q ss_pred             -cccccC-------CCCEEEEcCCCCCCCCC--CHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           90 -LGQALE-------DSDVVIIPAGVPRKPGM--TRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        90 -~~~al~-------~aDiVi~~ag~~~~~g~--~r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                       .+++++       ..|++|+.||.......  .....+..|+.    +.+.+.+.+.+....+.||++|.-.
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  160 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSA  160 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Confidence             222233       78999999997532211  12334455654    4444555555555567888776543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.17  E-value=0.0016  Score=58.22  Aligned_cols=115  Identities=15%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (340)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|.++  ......++....  .++.... +-+|   .++.++      
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999875  222233343222  1233221 1122   222232      


Q ss_pred             -CCCEEEEcCCCCCC--C--CCC---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 019519           96 -DSDVVIIPAGVPRK--P--GMT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 -~aDiVi~~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP  147 (340)
                       +.|++|+.||....  +  ..+   ....+..|+.....+.    +.+++. ..+.||++|..
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  152 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSSV  152 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEech
Confidence             79999999986421  1  122   2334556665554444    444433 34667766643

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.16  E-value=0.0066  Score=54.94  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.++|.|+||+|.+|..++..|+..+.  +|+++|.++  ......++....   ++.... +-+|   .++++      
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGEL  102 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999887  899999875  222333443211   233221 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCC---CcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCP---NAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p---~a~viv~tNP  147 (340)
                       ...|++|..||.....   ..+   ....+..|+...    +.+.+.+++...   .+.||++|.-
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~  169 (276)
T 2b4q_A          103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSV  169 (276)
T ss_dssp             CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCH
Confidence             3789999999864321   122   234455565544    555555655442   1677777653

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.16  E-value=0.0041  Score=56.81  Aligned_cols=116  Identities=10%  Similarity=0.107  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--H-HHHHHHhcCCCCceEEEEe-cCCcc---cccc-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GVAADVGHINTRSEVAGYM-GNDQL---GQAL-----   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~-~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-----   94 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.++.  . .....+....  .++.... +-+|.   ++.+     
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998762  1 1122223222  2333322 11221   1222     


Q ss_pred             --CCCCEEEEcCCCCCCCC----CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519           95 --EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                        ...|++|+.||.....+    .+   ....+..|+.-...+.+.+..+- ..+.||+++.
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence              37899999998643211    22   23456778888888888877653 3567776664

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.16  E-value=0.0023  Score=58.00  Aligned_cols=119  Identities=13%  Similarity=0.077  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCC--hHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cccc-------c
Q 019519           27 PDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-------L   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~--VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-------l   94 (340)
                      +.++|.|+||+|+  +|..++..|+..+.  +|++.|.++......++........... .+-+|   .++.       +
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~-~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFNPAAVLP-CDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGCCSEEEE-CCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcCCceEEE-eecCCHHHHHHHHHHHHHHc
Confidence            3468999999877  99999999999987  8999998863333334432221111111 11122   1122       2


Q ss_pred             CCCCEEEEcCCCCCCC---C-----CC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP~  148 (340)
                      ..-|++|+.||.....   +     .+   ....+..|+.....+.+.+..+-  ..+.||+++...
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~  168 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIG  168 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGG
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccc
Confidence            3579999999975321   1     22   22345566665555555554431  256777776543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.16  E-value=0.0022  Score=56.97  Aligned_cols=115  Identities=14%  Similarity=0.109  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++....  .++.... +-+|.   +++       
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  899999875  222333443222  1233222 11222   122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  147 (340)
                      +...|++|+.||.....   ..+.   ...+..|+.....    +.+.+.+..  +.||++|.-
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~  143 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSI  143 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccH
Confidence            23799999999865321   2232   2344556554444    444444443  677777653

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.16  E-value=0.004  Score=55.60  Aligned_cols=117  Identities=14%  Similarity=0.065  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.++|.|+||+|.+|.+++..|+..+.  +|+++|.++.  .....++....  .++.... +-+|   +++++      
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999887  8999998752  22233343222  1233322 1122   12222      


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 019519           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~  148 (340)
                        ...|+||+.||.....   ..+   ....+..|+.....+.+.+    ++.. .+.||++|...
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~  153 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIA  153 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC---
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccch
Confidence              5789999999864321   122   2334566776555555554    4443 45666666543

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.16  E-value=0.0013  Score=59.14  Aligned_cols=154  Identities=13%  Similarity=0.083  Sum_probs=83.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cccc-------cCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-------LEDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-------l~~a   97 (340)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|.++... ...+..... .-+..  +-+|   ..+.       +...
T Consensus        27 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~-~~~~~--Dv~~~~~v~~~~~~~~~~~g~i  100 (260)
T 3gem_A           27 SAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAGA-VALYG--DFSCETGIMAFIDLLKTQTSSL  100 (260)
T ss_dssp             CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHTC-EEEEC--CTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcCC-eEEEC--CCCCHHHHHHHHHHHHHhcCCC
Confidence            45899999999999999999999987  899999886321 112221111 01111  1122   1122       2478


Q ss_pred             CEEEEcCCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 019519           98 DVVIIPAGVPRKP--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (340)
Q Consensus        98 DiVi~~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~k  169 (340)
                      |++|+.||.....  ..+.   ...+..|+.-...+.+.+..+   ...+.||++|.....           .+ .+..-
T Consensus       101 D~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~-----------~~-~~~~~  168 (260)
T 3gem_A          101 RAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTR-----------KG-SSKHI  168 (260)
T ss_dssp             SEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG-----------TC-CSSCH
T ss_pred             CEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhc-----------CC-CCCcH
Confidence            9999999965332  2222   234556665554444444332   234677777653321           11 23223


Q ss_pred             eEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          170 LFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       170 viG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      .++.+......+-+.++..++-   .|++-.+.
T Consensus       169 ~Y~asKaa~~~l~~~la~e~~~---~Irvn~v~  198 (260)
T 3gem_A          169 AYCATKAGLESLTLSFAARFAP---LVKVNGIA  198 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT---TCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHCC---CCEEEEEe
Confidence            3333322223456667777752   36554443

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.16  E-value=0.0003  Score=60.33  Aligned_cols=103  Identities=14%  Similarity=0.181  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC---CCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVi~~a  104 (340)
                      +|||.|+||+|++|++++..|+ .+.  +|+++|.+.. ....|+.+            ..+++++++   ..|+||+++
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~------------~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITN------------IDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTC------------HHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCC------------HHHHHHHHHHhCCCCEEEECC
Confidence            4689999999999999999999 776  8999997642 00001110            011223333   479999999


Q ss_pred             CCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecC
Q 019519          105 GVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYCP-NAIVNMISN  146 (340)
Q Consensus       105 g~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tN  146 (340)
                      |.....   ..+.   ...+..|+.....+.+.+.++-. .+.++++|.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            864321   1222   23456777777777777766532 256666654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.15  E-value=0.0029  Score=57.11  Aligned_cols=157  Identities=21%  Similarity=0.271  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al----   94 (340)
                      ++.+.+.|+||+|.+|.+++..|+..|.  +|++.|...   ......++....  .++.... +-+|.   ++++    
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~  101 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVI  101 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999987  899988854   222333343322  1233221 11222   2222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHH
Q 019519           95 ---EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  161 (340)
                         ...|++|+.||.....   ..+.   ...+..|+.-.    +.+.+.+.+. ..+.||++|.-.           -.
T Consensus       102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~-----------~~  169 (269)
T 4dmm_A          102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ-RSGRIINIASVV-----------GE  169 (269)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCHH-----------HH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchh-----------hc
Confidence               2789999999975322   1222   23445565544    4444444444 346677665321           01


Q ss_pred             hCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       162 sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .+ .+..-.++.+......+-+.++..++  +..|++..+
T Consensus       170 ~~-~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  206 (269)
T 4dmm_A          170 MG-NPGQANYSAAKAGVIGLTKTVAKELA--SRGITVNAV  206 (269)
T ss_dssp             HC-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CC-CCCchhHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            22 33333444432222345566666653  344554444

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.15  E-value=0.00065  Score=60.94  Aligned_cols=117  Identities=16%  Similarity=0.178  Sum_probs=72.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC-CC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      +.++|.|+||+|++|++++..|+..+.  +|++.|. +.  ......++....  .++.... +-+|   +.++++    
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999887  8999988 33  222233343222  1233221 1122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCC
Q 019519           96 ---DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNP  147 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP  147 (340)
                         +.|+||+.||.....   ..+   ....+..|+.....+.+.+.++.. .+.||++|..
T Consensus        96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~  157 (274)
T 1ja9_A           96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  157 (274)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcCh
Confidence               789999999875321   122   234566788777777777666532 2567766543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.15  E-value=0.0012  Score=64.96  Aligned_cols=100  Identities=13%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccC---CCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVi~~  103 (340)
                      |||+|||+ |.+|++++..|...++  +|.++|.++..  ....+.........+..+   +|++++++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~---~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAF---ETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEEC---SCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCCCCCCCeEEE---CCHHHHHhcccCCCEEEEe
Confidence            69999998 9999999999998887  89999987522  111111100001124432   45556555   59999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                      ...+               ..++++++.+..+. |+.+||..+|-..
T Consensus        76 Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~  107 (478)
T 1pgj_A           76 VQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHF  107 (478)
T ss_dssp             CCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred             cCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence            5221               11333344555444 5677777787764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.15  E-value=0.0018  Score=57.71  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.+++.|+||+|.+|..++..|+..+.  +|++.|.++.  .....++.     .++.... +-+|   +++++      
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  22222331     1222221 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       ...|++|+.||.....   ..+.   ...+..|+.    ..+.+.+.+++..  +.||++|..
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~  139 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASV  139 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcch
Confidence             2469999999975321   2222   334556654    4555566665443  777777654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.14  E-value=0.0011  Score=63.52  Aligned_cols=97  Identities=18%  Similarity=0.192  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHh-CCCcceEEEEeCCCc-HHHHHH-HhcCC------CCce--EE--E--EecCCcccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT-PGVAAD-VGHIN------TRSE--VA--G--YMGNDQLGQ   92 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~-~~~~~el~L~D~~~~-~~~~~d-l~~~~------~~~~--v~--~--~~~~~d~~~   92 (340)
                      +|||+|||+ |.+|..++..|+. .++  +|.++|..+. ...... +....      ....  +.  .  ...++|+++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI   78 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence            479999998 9999999999987 476  8999993321 112222 22111      0000  11  0  001246667


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE
Q 019519           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNM  143 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv  143 (340)
                      ++++||+||++.-.+                ..+++++.+..+. |+.+|+.
T Consensus        79 a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           79 AISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            889999999986321                1245666676665 4665543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.14  E-value=0.00042  Score=61.97  Aligned_cols=116  Identities=16%  Similarity=0.319  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      ++.+++.|+||+|.+|.+++..|+..+.  +|+++|.++.  .....++..     ++.... +-+|   .++.++    
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~   79 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD-----AALAVAADISKEADVDAAVEAALS   79 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  8999998762  222223321     222221 1122   222232    


Q ss_pred             ---CCCEEEEcCCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHHhC---CCcEEEEecCCC
Q 019519           96 ---DSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYC---PNAIVNMISNPV  148 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~g----~~r---~~~~~~N~~----i~~~i~~~i~~~~---p~a~viv~tNP~  148 (340)
                         ..|++|+.||.....+    .+.   ...+..|+.    +.+.+.+.+.+..   ..+.|++++...
T Consensus        80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~  149 (261)
T 3n74_A           80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTG  149 (261)
T ss_dssp             HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred             hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchh
Confidence               7899999999754221    222   223444544    4555555555442   256677776544

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.13  E-value=0.0026  Score=62.69  Aligned_cols=98  Identities=15%  Similarity=0.163  Sum_probs=62.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhc-CCCCceEEEEecCCcccccc---CCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQAL---EDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~al---~~aDiVi~~a  104 (340)
                      |||+|||+ |.+|++++..|...++  +|.++|.++....  ++.. ......+..   ++|+++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~--~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVD--DFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999998 9999999999998887  8999998763222  2221 000012333   24555654   5999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                      -.+               ..++++++.+..+. |+.+||..+|-..
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            221               12333344455444 5677777777654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.13  E-value=0.0015  Score=58.31  Aligned_cols=124  Identities=16%  Similarity=0.198  Sum_probs=68.4

Q ss_pred             ccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CCccc
Q 019519           13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQLG   91 (340)
Q Consensus        13 ~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d~~   91 (340)
                      +++.+...+.....+.++|.|+||+|.+|..++..|+..|.  +|+++|.++  ....++.      .+....+ ..+.+
T Consensus         4 ~~~~~~~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~--~~~~~~~------~~~~~~D~~~~~~   73 (249)
T 1o5i_A            4 DKIHHHHHHMELGIRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE--ELLKRSG------HRYVVCDLRKDLD   73 (249)
T ss_dssp             ------------CCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH--HHHHHTC------SEEEECCTTTCHH
T ss_pred             cccchhhhhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH--HHHHhhC------CeEEEeeHHHHHH
Confidence            34455555555556678999999999999999999999887  899999864  1111221      1221111 11222


Q ss_pred             ---cccCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           92 ---QALEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        92 ---~al~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                         +.+.+.|++|+.||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|..
T Consensus        74 ~~~~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  141 (249)
T 1o5i_A           74 LLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSF  141 (249)
T ss_dssp             HHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             HHHHHhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcch
Confidence               2234899999999865321   1222   2334455443    555566666553 4667776643

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.13  E-value=0.0035  Score=55.31  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=67.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-------   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-------   95 (340)
                      ++|.|+||+|.+|.+++..|+..+.  +|+++|.+..  .....++.... ..++.... +-+|   +.++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999887  8999998752  22223331111 12333322 1122   223333       


Q ss_pred             CCCEEEEcCCCCCCCC------CC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKPG------MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g------~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +.|+||+.||......      .+   ....+..|+...    +.+.+.+.+.. .+.+|++|..
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~  143 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIASV  143 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            7899999998643211      12   223445565444    45555555443 4566666643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.12  E-value=0.00043  Score=56.46  Aligned_cols=91  Identities=14%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      +||+|+|+ |.+|..++..|...+.  ++.++|.++.  +..+.++.     ..+..   .++++++++++|+||.+.+.
T Consensus        22 ~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~~   90 (144)
T 3oj0_A           22 NKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATSS   90 (144)
T ss_dssp             CEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCCC
Confidence            59999998 9999999988877665  6999998752  22233332     12222   24667888999999998765


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      +.. -..                  .....|..+++.+++|.+
T Consensus        91 ~~~-~~~------------------~~~l~~g~~vid~~~p~~  114 (144)
T 3oj0_A           91 KTP-IVE------------------ERSLMPGKLFIDLGNPPN  114 (144)
T ss_dssp             SSC-SBC------------------GGGCCTTCEEEECCSSCS
T ss_pred             CCc-Eee------------------HHHcCCCCEEEEccCCcc
Confidence            421 000                  011235788999999975

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.12  E-value=0.0069  Score=54.06  Aligned_cols=116  Identities=13%  Similarity=0.058  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|.++.  .....++....  .++.... +-+|.   ++++      
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  22233343222  2333322 11221   2222      


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 019519           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  147 (340)
                        ...|++|+.||.....   ..+   ....+..|+.-...+.+.+    .+. ..+.||++|..
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  147 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSV  147 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCG
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence              5799999999975321   122   2334556666555554444    333 35677777653

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.12  E-value=0.00022  Score=61.20  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccC---CCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVi~~  103 (340)
                      ++|.|+||+|++|++++..|+..    +|+++|.++.  .....++........+.   ...++.++++   +.|+||+.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999998876    8999998752  22222222100000000   0112334445   89999999


Q ss_pred             CCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          104 AGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       104 ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +|.....      .......+..|+.....+.+.+.+. +.+.+|++|..
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~  122 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAY  122 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence            9865321      1223456678888888888877432 34567766653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.11  E-value=0.002  Score=58.15  Aligned_cols=117  Identities=15%  Similarity=0.184  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhc-CCCCceEEEEe-cCCc---cccccC-----
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~-~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|.++  ......++.. .....++.... +-+|   ++++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999887  899999875  2222333311 01112333322 1122   223344     


Q ss_pred             --CCCEEEEcCCCCCCC---CC----CH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCC
Q 019519           96 --DSDVVIIPAGVPRKP---GM----TR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~----~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~  148 (340)
                        +.|++|+.||.....   ..    +.   ...+..|+.....+    .+.+.+..  +.||++|...
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~  150 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIA  150 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEeccc
Confidence              899999999864321   11    22   23345565544444    44444333  6777776544

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.11  E-value=0.0036  Score=55.83  Aligned_cols=115  Identities=23%  Similarity=0.315  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-------   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-------   95 (340)
                      +++.|+||+|.+|..++..|+..+.  +|++.|.++.  .....++....  .++.... +-+|   ++++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999987  8999998752  22233343222  1222221 1122   222333       


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|+.||.....   ..+.   ...+..|+.    ..+.+.+.+.+..+.+.||++|.-
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  140 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQ  140 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECch
Confidence            799999999864321   1222   234455554    445555556555435677777654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.11  E-value=0.0016  Score=58.31  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (340)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|.++.  .....++..     ++.... +-+|   +.++++      
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~~   84 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDAL   84 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999987  8999998752  111222211     111111 1122   223333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 019519           96 -DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  146 (340)
                       +.|+||+.||.....   ..+   ....+..|+.....+    .+.+.+....+.|++++.
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence             799999999865321   122   233455565544444    444443332466776654

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.11  E-value=0.0015  Score=57.93  Aligned_cols=115  Identities=17%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC-CC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      .+++.|+||+|.+|..++..|+..+.  +|++.|. ++  ......++....  .++.... +-+|   .++.+      
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999887  8999988 43  222233343222  1233221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       ...|++|+.||.....   ..+   ....+..|+.-    .+.+.+.+++.. .+.||++|..
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  142 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASV  142 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence             2799999999975321   122   23345566655    555566665543 4667776643

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.11  E-value=0.00084  Score=59.49  Aligned_cols=155  Identities=16%  Similarity=0.189  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-------   94 (340)
                      .+++.|+||+|.+|++++..|+..+.  +|++.|.++  ......++....  .++.... +-+|.   ++.+       
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999987  899999876  223333343322  1233222 11221   1222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~  164 (340)
                      ...|++|+.||.....   ..+   ....+..|+.-...+.+    .+.+. +.+.+|+++....           ..+ 
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~~-  147 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSVVG-----------SAG-  147 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHH-----------HHC-
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhh-----------ccC-
Confidence            2579999999975322   122   23345556655444444    44433 3467777765431           122 


Q ss_pred             CCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       165 ~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .|....++.+......+-+.+++.+.  +..|++..+
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  182 (247)
T 3lyl_A          148 NPGQTNYCAAKAGVIGFSKSLAYEVA--SRNITVNVV  182 (247)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            34434444433223345566666653  344554443

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.11  E-value=0.001  Score=58.85  Aligned_cols=114  Identities=13%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      .++++.|+||+|.+|..++..|+..|.  +|++.|.++  .+....++..     .+.... +-+|   .++.+      
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   74 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEW   74 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999987  899999876  2222333321     122221 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP  147 (340)
                       ...|++|+.||.....   ..+   -...+..|+.-...+.+.+..+-  ..+.||+++..
T Consensus        75 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~  136 (235)
T 3l6e_A           75 GGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSS  136 (235)
T ss_dssp             HCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred             cCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCH
Confidence             3679999999974321   222   23445667766655555544331  23466666554

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.10  E-value=0.0042  Score=54.44  Aligned_cols=102  Identities=21%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (340)
                      ++++.|+||+|.+|.+++..|+..|.  +|++.|.+.  ......++.... ..++.... +-+|   ..++++      
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  899999875  233333332111 11232221 1122   223333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH
Q 019519           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAI  132 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i  132 (340)
                       ..|++|+.||.....   ..+.   ...+..|+.-...+.+.+
T Consensus        79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~  122 (235)
T 3l77_A           79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAF  122 (235)
T ss_dssp             SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             789999999975322   1222   234455655444444443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.10  E-value=0.013  Score=52.23  Aligned_cols=119  Identities=17%  Similarity=0.187  Sum_probs=70.4

Q ss_pred             CCCCeEEEEcCCCC-hHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc----
Q 019519           26 VPDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~-VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (340)
                      ++.+++.|+||+|+ +|.+++..|+..+.  +|++.|.+.  ......++.... ..++.... +-+|   .++++    
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTV   96 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHH
Confidence            34568999998774 99999999999987  899999876  233333443322 12344332 1122   12222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           95 ---EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                         ...|++|+.||.....   ..+.   ...+..|+.-.    +.+.+.+.+....+.|++++..
T Consensus        97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  162 (266)
T 3o38_A           97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASV  162 (266)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCG
T ss_pred             HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCH
Confidence               3679999999974322   1232   23445565444    4444444444456777777643

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.09  E-value=0.0046  Score=54.38  Aligned_cols=117  Identities=18%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcc-----eEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc---
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL---   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al---   94 (340)
                      ++|.|+||+|.+|.+++..|+..+...     +|++.|.+.  ......++....  .++.... +-+|   +.+++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccC--CeeeEEEecCCCHHHHHHHHHHH
Confidence            579999999999999999998876422     789999875  222233343221  2333332 1122   12222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 019519           95 ----EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ----~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~  148 (340)
                          .+.|+||+.||.....   ..+   ....+..|+.....+.+.+    .+. ..+.||++|...
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~  147 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVA  147 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecch
Confidence                2799999999975321   122   2334555665555444444    333 356777776543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.08  E-value=0.0085  Score=54.27  Aligned_cols=116  Identities=17%  Similarity=0.282  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (340)
                      +.++|.|+||+|.+|+.++..|+..+.  +|++++.++  ......++....  .++.... +-+|.   +++       
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999998886  899988764  222333444322  2333322 11222   122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +.+.|+||..||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|..
T Consensus       119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  181 (285)
T 2c07_A          119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSI  181 (285)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            24789999999875321   122   23445566665    444444444443 4667766654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.07  E-value=0.003  Score=56.41  Aligned_cols=116  Identities=12%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++....  .++.... +-+|   ..+.++     
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            446899999999999999999999987  899999876  334444454332  2333332 1122   222232     


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       ..|++|+.||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|..
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  143 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGAT  143 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEG
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCH
Confidence             569999999975421   2222   233455554    4455555555543 4667766543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.07  E-value=0.01  Score=52.56  Aligned_cols=115  Identities=17%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------L   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l   94 (340)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.|.++ ..... .+....  .++.... +-+|.   +++       +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA-AIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF   80 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH-HHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH-HHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            446899999999999999999999987  899999876 32221 333222  1233222 11222   122       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ...|++|+.||.....   ..+.   ...+..|+..    .+.+.+.+++.. .+.||++|..
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  142 (249)
T 2ew8_A           81 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTST  142 (249)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcch
Confidence            4789999999865321   1222   2345566655    445555565543 4667777653

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.06  E-value=0.0018  Score=57.45  Aligned_cols=106  Identities=16%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH---HHHHHhcCCCCceEEEEecCCcccccc----CCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQAL----EDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~al----~~aDiVi  101 (340)
                      ++|.|+||+|.+|.+++..|+..+.  +|++.|.++...   ...|+.+.            .+.++++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~------------~~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRK------------QAIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCH------------HHHHHHHHHhCCCCCEEE
Confidence            4799999999999999999999887  899999875210   11222221            1122233    4569999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d  149 (340)
                      +.||..... ......+..|......+.+.+..+   ...+.||++|....
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  117 (257)
T 1fjh_A           68 LCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVAS  117 (257)
T ss_dssp             ECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             ECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhh
Confidence            999975412 224556667766665555555432   23467777765543

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.06  E-value=0.0019  Score=56.81  Aligned_cols=115  Identities=20%  Similarity=0.247  Sum_probs=66.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEE-eCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (340)
                      ++|.|+||+|.+|..++..|+..+.  ++++. +.++  ......++....  .++.... +-+|   ++++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999887  78874 5553  122222332211  1333222 1122   222332      


Q ss_pred             -CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           96 -DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                       +.|+||+.||.....   ..+   ....+..|+.....+.+.+.++   ...+.+|++|..
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  139 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASV  139 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECCh
Confidence             789999999875421   122   2334566666655554444332   235677777643

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.05  E-value=0.0022  Score=58.74  Aligned_cols=119  Identities=9%  Similarity=0.053  Sum_probs=72.3

Q ss_pred             CCCCeEEEEcCCCC--hHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCCc---ccccc----
Q 019519           26 VPDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~--VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (340)
                      ++.+++.|+||+|+  +|..++..|+..+.  +|++.|.++. .....++.....  ++.... +-+|   .++.+    
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~  104 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLE  104 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHH
Confidence            34568999999888  99999999999987  8999998752 122222221111  122211 1122   12222    


Q ss_pred             ---CCCCEEEEcCCCCC-----CC--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519           95 ---EDSDVVIIPAGVPR-----KP--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~-----~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                         ...|++|+.||...     .+  ..+   ....+..|+.....+.+.+..+- ..+.||++|...
T Consensus       105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~  172 (293)
T 3grk_A          105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYG  172 (293)
T ss_dssp             HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred             HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehh
Confidence               37899999999753     11  222   23456677777777777766553 357788777543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.05  E-value=0.0031  Score=56.42  Aligned_cols=117  Identities=21%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.++  .+....++....  .++.... +-+|.   ++.+      
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999887  899999876  233333444322  2333222 11221   2222      


Q ss_pred             -CCCCEEEEcCCCCCCC--CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 019519           95 -EDSDVVIIPAGVPRKP--GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~  148 (340)
                       ...|++|+.||.....  ..+.   ...+..|+.-...+.+.    +.+. ..+.||++|...
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  149 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISSMA  149 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGG
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHH
Confidence             3789999999864321  2332   23445566555444444    4433 457777776543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.05  E-value=0.0013  Score=57.44  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---ccc-ccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQ-ALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~-al~~aDiVi~~a  104 (340)
                      |||.|+|+ |.+|++++..|...++  +++++|.++..  ..++.+.....-+.+  +.+|   +++ .+++||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~l~~~~~~~~i~g--d~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDREL--CEEFAKKLKATIIHG--DGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHHSSSEEEES--CTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHHcCCeEEEc--CCCCHHHHHhcCcccCCEEEEec
Confidence            68999998 9999999999998887  89999987522  222221110111221  1122   223 378999999985


Q ss_pred             C
Q 019519          105 G  105 (340)
Q Consensus       105 g  105 (340)
                      +
T Consensus        74 ~   74 (218)
T 3l4b_C           74 P   74 (218)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.04  E-value=0.0023  Score=57.40  Aligned_cols=116  Identities=14%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcC-CCCceEEEEecCCc---ccccc------
Q 019519           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHI-NTRSEVAGYMGNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaa--G~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~-~~~~~v~~~~~~~d---~~~al------   94 (340)
                      .++|.|+||+  |.+|.+++..|+..+.  +|++.|.++ ......++... ....-+..  +-+|   .++++      
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~--D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQC--DVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC--CTTCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEc--cCCCHHHHHHHHHHHHHH
Confidence            3579999998  8999999999999987  899999875 22223333221 11111111  1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--C-CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~-----~--g-~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                       ...|++|+.||....     +  . .+   ....+..|+.....+.+.+..+- +.+.||++|..
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  150 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYL  150 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcch
Confidence             267999999997542     1  1 22   23456778888888888776653 24677777653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.04  E-value=0.0036  Score=56.40  Aligned_cols=119  Identities=14%  Similarity=0.171  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al----   94 (340)
                      ++.+++.|+||+|.+|.+++..|+..|.  +|++.|.+.   .+....++....  .++.... +-+|.   ++.+    
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   91 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAV   91 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999987  899988765   223333444322  2233222 11222   2222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519           95 ---EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                         ...|++|+.||.....   ..+   ....+..|+.-...+.+.+..+- +.+.||+++...
T Consensus        92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence               3789999999975321   123   23456678777777777776654 356777776544

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.04  E-value=0.0015  Score=59.42  Aligned_cols=115  Identities=18%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (340)
                      ++.+++.|+||+|.+|.+++..|+..|.  +|++.|.++.  .....++.     .++.... +-+|   .++++     
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTA   97 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  8999998752  22222221     1222211 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                        ...|++|+.||.....   ..+   ....+..|+.-...+.+.+..+   ...+.||++|..
T Consensus        98 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~  161 (277)
T 4dqx_A           98 KWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSY  161 (277)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCG
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECch
Confidence              3789999999964321   122   2334556666555444444332   234677777654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.03  E-value=0.0029  Score=55.37  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=81.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccccccCCC----CEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLGQALEDS----DVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~a----DiVi  101 (340)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.++.  .....++.. .. .-+.... ...+.++.++..    |++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLSN-NV-GYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCSS-CC-CEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhh-cc-CeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            4799999999999999999999987  8999998752  222222211 10 0111110 001222233332    9999


Q ss_pred             EcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          102 IPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       102 ~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      +.||.....   ..+   -...+..|+.-...+.+.+..+- . .+.+|+++.....           .+ .+..-.++.
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~-----------~~-~~~~~~Y~a  145 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ-----------QP-KAQESTYCA  145 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT-----------SC-CTTCHHHHH
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC-----------CC-CCCCchhHH
Confidence            999865322   122   23345667766666666555432 1 2366666543321           11 222223333


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      +......+-+.++..++  +..|++..+
T Consensus       146 sKaa~~~~~~~la~e~~--~~gi~v~~v  171 (230)
T 3guy_A          146 VKWAVKGLIESVRLELK--GKPMKIIAV  171 (230)
T ss_dssp             HHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence            32223346667777774  445654444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.03  E-value=0.0067  Score=54.80  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   .+....++....  .++.... +-+|   .+++++    
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999987  899988765   223333444322  1222221 1122   222333    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           96 ---DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        96 ---~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                         ..|++|..||.....   ..+   ....+..|+.-...+.+.+..+- ..+.||+++..
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence               789999999975322   122   23455677777777777666553 35677777654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.03  E-value=0.0032  Score=58.73  Aligned_cols=133  Identities=18%  Similarity=0.210  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCChHHH-HHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcccccc--CCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~-~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al--~~aDiVi~~a  104 (340)
                      ++||.|||. |..|.+ +|..|...|+  +|..+|..+.......|....  ..+.  .+ .+. +.+  .++|+||.+.
T Consensus         4 ~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v~--~g-~~~-~~l~~~~~d~vV~Sp   74 (326)
T 3eag_A            4 MKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDVY--EG-FDA-AQLDEFKADVYVIGN   74 (326)
T ss_dssp             CCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEEE--ES-CCG-GGGGSCCCSEEEECT
T ss_pred             CcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEEE--CC-CCH-HHcCCCCCCEEEECC
Confidence            579999998 999985 8888888998  999999875211222344333  2333  22 233 345  4899999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCCCceEe
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~tNP~d--~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      |+|...-+ ......++++++.++ +.+.+ ...+..+|-+|-..+  +.|.+++++++..| .++.-++|
T Consensus        75 gi~~~~p~-~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g-~~~~~~~g  142 (326)
T 3eag_A           75 VAKRGMDV-VEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG-LAPGFLIG  142 (326)
T ss_dssp             TCCTTCHH-HHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT-CCCEEECS
T ss_pred             CcCCCCHH-HHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC-CCceEEec
Confidence            88742211 112223455555443 22222 233446677776665  67777777888887 55433343

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.02  E-value=0.0075  Score=54.53  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEe-cCCccc---cc------cC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQLG---QA------LE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------l~   95 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.++ ......++....  .++.... +-+|.+   +.      +.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--GSAEAVVADLADLEGAANVAEELAATR  105 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            346899999999999999999999987  899999554 333344454332  2333332 112221   11      13


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|..||.....   ..+.   ...+..|+.-...    +.+.+.+. ..+.||++|..
T Consensus       106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~  166 (273)
T 3uf0_A          106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH-GSGRIVTIASM  166 (273)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcch
Confidence            789999999975322   1222   2345556654444    44444444 35677777654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.02  E-value=0.004  Score=56.01  Aligned_cols=119  Identities=15%  Similarity=0.108  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC-CC--cHHHHHHHhcCCCCceEEEEe-cCCcc-------cccc-
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYM-GNDQL-------GQAL-   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~-------~~al-   94 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|. ++  ......++.... ..++.... +-+|.       ++++ 
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHH
Confidence            345899999999999999999999987  8999998 54  222233332210 11232221 11222       1222 


Q ss_pred             ------CCCCEEEEcCCCCCCC---CCC--------------HHHHHHHHHHHHHHHHHHHHHhC--CC------cEEEE
Q 019519           95 ------EDSDVVIIPAGVPRKP---GMT--------------RDDLFNINAGIVKDLCSAIAKYC--PN------AIVNM  143 (340)
Q Consensus        95 ------~~aDiVi~~ag~~~~~---g~~--------------r~~~~~~N~~i~~~i~~~i~~~~--p~------a~viv  143 (340)
                            ...|++|+.||.....   ..+              ....+..|+.....+.+.+..+-  ..      +.||+
T Consensus        87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~  166 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN  166 (276)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence                  2789999999864321   111              12355667776666666665542  22      67777


Q ss_pred             ecCCC
Q 019519          144 ISNPV  148 (340)
Q Consensus       144 ~tNP~  148 (340)
                      +|...
T Consensus       167 isS~~  171 (276)
T 1mxh_A          167 LCDAM  171 (276)
T ss_dssp             ECCGG
T ss_pred             ECchh
Confidence            76543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.01  E-value=0.025  Score=53.12  Aligned_cols=158  Identities=16%  Similarity=0.164  Sum_probs=90.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---------HHHHHHHhcCCCCceEEEEe-cCCcc---ccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GNDQL---GQA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a   93 (340)
                      +.+.+.|+||+|.+|..++..|+..|.  +|++.|.++.         .....++....  .++.... +-+|.   +++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHH
Confidence            346899999999999999999999987  8999998752         12333443322  2333321 11221   222


Q ss_pred             c-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHH
Q 019519           94 L-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAE  157 (340)
Q Consensus        94 l-------~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~  157 (340)
                      +       ...|++|..||.....   ..+.   ...+..|+.-...+.+.+..+   ...+.||++|.+.......   
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~---  196 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVW---  196 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGG---
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCC---
Confidence            2       3899999999864321   2222   344566776666666555433   2457888888776533200   


Q ss_pred             HHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       158 ~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                             ++..-.++.+......+-+.+++.++   ..|++-.+
T Consensus       197 -------~~~~~~Y~aSKaal~~l~~~la~e~~---~gIrvn~v  230 (346)
T 3kvo_A          197 -------FKQHCAYTIAKYGMSMYVLGMAEEFK---GEIAVNAL  230 (346)
T ss_dssp             -------TSSSHHHHHHHHHHHHHHHHHHHHTT---TTCEEEEE
T ss_pred             -------CCCchHHHHHHHHHHHHHHHHHHHhc---CCcEEEEE
Confidence                   12222233332222345667788876   44655444

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.01  E-value=0.012  Score=52.26  Aligned_cols=157  Identities=18%  Similarity=0.188  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cC--Cc---cccc----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN--DQ---LGQA----   93 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~--~d---~~~a----   93 (340)
                      ++.+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++..... .++.... +-  +|   .++.    
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHH
Confidence            3456899999999999999999999987  899999876  2222333322111 0111111 11  11   1122    


Q ss_pred             ---cCCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHH
Q 019519           94 ---LEDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNPVNSTVPIAAEVF  159 (340)
Q Consensus        94 ---l~~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~  159 (340)
                         +...|++|+.||...  .+  ..+.   ...+..|+.-...+.+.    +.+. ..+.||++|......        
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~--------  157 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFTSSSVGRQ--------  157 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGTS--------
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEECChhhcc--------
Confidence               237899999998632  12  2232   23455666555444444    4433 456777776543211        


Q ss_pred             HHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       160 ~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                         + .+..-.++.+......+-+.+++.++  +. |++-.+
T Consensus       158 ---~-~~~~~~Y~asK~a~~~l~~~la~e~~--~~-irvn~v  192 (252)
T 3f1l_A          158 ---G-RANWGAYAASKFATEGMMQVLADEYQ--QR-LRVNCI  192 (252)
T ss_dssp             ---C-CTTCHHHHHHHHHHHHHHHHHHHHTT--TT-CEEEEE
T ss_pred             ---C-CCCCchhHHHHHHHHHHHHHHHHHhc--CC-cEEEEE
Confidence               1 22222333332222345667777775  33 665444

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.00  E-value=0.0047  Score=55.75  Aligned_cols=119  Identities=22%  Similarity=0.268  Sum_probs=71.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC------------C---cHHHHHHHhcCCCCceEEEEe-cCCc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA------------N---TPGVAADVGHINTRSEVAGYM-GNDQ   89 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~------------~---~~~~~~dl~~~~~~~~v~~~~-~~~d   89 (340)
                      ++.+++.|+||+|.+|.+++..|+..|.  +|+++|.+            .   ......++....  .++.... +-+|
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~   84 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRD   84 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence            4456899999999999999999999987  89999973            1   122222333222  2333322 1122


Q ss_pred             c---ccc-------cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           90 L---GQA-------LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        90 ~---~~a-------l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .   ++.       +...|++|+.||.....   ..+.   ...+..|+.    +++.+.+.+.+..+.+.||++|.-.
T Consensus        85 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  163 (277)
T 3tsc_A           85 FDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAA  163 (277)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHh
Confidence            2   111       23689999999975322   2232   233455554    4555666676666567888777543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.00  E-value=0.0068  Score=54.78  Aligned_cols=119  Identities=11%  Similarity=0.073  Sum_probs=70.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc-----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL-----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-----   94 (340)
                      ++.+++.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++.... ..++.... +-+|.   ++++     
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~  101 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALK  101 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4556899999999999999999999887  899999875  222333332211 11232221 11221   1222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                        ...|++|+.||.....   ..+   -...+..|+.-...+.+.+...   ...+.||++|..
T Consensus       102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  165 (277)
T 4fc7_A          102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITAT  165 (277)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCS
T ss_pred             HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECch
Confidence              3789999999864321   122   2334556666555555554322   135677777643

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.00  E-value=0.0045  Score=55.51  Aligned_cols=117  Identities=19%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc----
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL----   94 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al----   94 (340)
                      .++.+++.|+||+|.+|.+++..|+..+.  +|++.|.+.  .+....++....  .++.... +-+|.   ++.+    
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   83 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETM   83 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            34556899999999999999999999987  899999875  233334444322  1233221 11222   1222    


Q ss_pred             ---CCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 019519           95 ---EDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  147 (340)
                         ...|++|+.||...  .+  ..+.   ...+..|+.-...    +.+.+.+.  .+.||+++.-
T Consensus        84 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~g~iv~isS~  148 (264)
T 3ucx_A           84 KAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES--KGAVVNVNSM  148 (264)
T ss_dssp             HHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--TCEEEEECCG
T ss_pred             HHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEECcc
Confidence               37899999998632  12  2232   2334556554444    44444443  3677777654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.99  E-value=0.006  Score=53.76  Aligned_cols=119  Identities=16%  Similarity=0.158  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC-CCceEEEEec-CCcc---ccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMG-NDQL---GQA------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~-~~d~---~~a------   93 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|.++  ......++.... ....+..... .+|.   .+.      
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            456899999999999999999999987  899999876  222333343322 1112221110 0111   111      


Q ss_pred             -cCCCCEEEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           94 -LEDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        94 -l~~aDiVi~~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                       +...|++|+.||.....    ..+   ....+..|+.-...+.+.+..+   ...+.|++++..
T Consensus        91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  155 (247)
T 3i1j_A           91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSS  155 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCG
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcch
Confidence             23789999999863221    122   2334555665555555544322   245677777644

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.99  E-value=0.0041  Score=55.46  Aligned_cols=112  Identities=18%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH-HHHHHhcCCCCceEEEEecCCc---ccccc-------CC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQ---LGQAL-------ED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d---~~~al-------~~   96 (340)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|.++... ...++..    .-+..  +-+|   .++++       ..
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~--D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGG----AFFQV--DLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTC----EEEEC--CTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhC----CEEEe--eCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999987  899999876331 1222321    01111  1122   12222       37


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                      .|++|+.||.....   ..+   ....+..|+.-...+.+.+..+   ...+.||++|.-
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~  137 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASV  137 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence            89999999865321   222   2345566776555555544332   234677777653

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.99  E-value=0.00029  Score=62.24  Aligned_cols=109  Identities=15%  Similarity=0.094  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc--------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--------   94 (340)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|.++...     ..     ...... +-+|   ..+++        
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~-----~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~   69 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQ-----AD-----SNILVDGNKNWTEQEQSILEQTASSLQ   69 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTT-----SS-----EEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCcccc-----cc-----ccEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            346899999999999999999999987  899999875211     00     011110 0011   11222        


Q ss_pred             -CCCCEEEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                       .+.|+||+.||.....    ..+   ....+..|+.....+.+.+..+- ..+.||++|..
T Consensus        70 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  131 (236)
T 1ooe_A           70 GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  131 (236)
T ss_dssp             TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence             3789999999864321    111   23455678777777777766553 24677777654

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.99  E-value=0.0028  Score=57.15  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=69.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.++|.|+||+|.+|.+++..|+..+.  +|+++|.+..  ......+....  .++.... +-+|   +.++++     
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~  108 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEKD  108 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHHH
Confidence            446899999999999999999998887  8999998762  22222222111  1222221 1122   223333     


Q ss_pred             --CCCEEEEcCCCCCC--C---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           96 --DSDVVIIPAGVPRK--P---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 --~aDiVi~~ag~~~~--~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                        ..|+||+.||....  +   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|...
T Consensus       109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~  174 (279)
T 3ctm_A          109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSIS  174 (279)
T ss_dssp             HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCCT
T ss_pred             hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECchH
Confidence              48999999986432  1   111   12344556655    567777776654 45666665543

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.98  E-value=0.0043  Score=55.10  Aligned_cols=117  Identities=20%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC-CC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (340)
                      +.++|.|+||+|.+|..++..|+..+.  ++++.|. +.  ......++.....  ++.... +-+|   .++++     
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   87 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALGF--DFYASEGNVGDWDSTKQAFDKVKA   87 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--eeEEEecCCCCHHHHHHHHHHHHH
Confidence            456999999999999999999999987  7888884 33  2333334433221  222211 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 --EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                        ...|++|+.||.....   ..+.   ...+..|+..    .+.+.+.+.+.. .+.||++|...
T Consensus        88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  152 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVN  152 (256)
T ss_dssp             HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCC
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchh
Confidence              3679999999875322   2222   2345556655    455555555543 46777777654

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.98  E-value=0.0056  Score=55.10  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHH-hcCCCCceEEEEe-cCCc---ccccc----
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADV-GHINTRSEVAGYM-GNDQ---LGQAL----   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl-~~~~~~~~v~~~~-~~~d---~~~al----   94 (340)
                      ++.+++.|+||+|.+|..++..|+..|.  +|+++|.+.  ......++ ....  .++.... +-+|   +.+++    
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~   94 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVK   94 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHH
Confidence            4456899999999999999999999987  899999875  22223333 1111  1222221 1122   12222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           95 ---EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                         ...|++|+.||.....   ..+.   ...+..|+.....+.+.+-.+   ...+.||++|..
T Consensus        95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~  159 (267)
T 1vl8_A           95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  159 (267)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence               3789999999975322   1222   234556666555554444322   234567766543

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.98  E-value=0.00046  Score=61.13  Aligned_cols=109  Identities=13%  Similarity=0.100  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc--------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--------   94 (340)
                      +.++|.|+||+|.+|.+++..|+..+.  +|+++|.++...     ..     ...... +-+|   ..+++        
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~-----~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~~   73 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEE-----AS-----ASVIVKMTDSFTEQADQVTAEVGKLLG   73 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTT-----SS-----EEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhc-----cC-----CcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            346899999999999999999999887  899999875211     00     011110 0011   11222        


Q ss_pred             -CCCCEEEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                       .+.|++|+.||.....    ..+   ....+..|+.....+.+.+..+- ..+.||++|.-
T Consensus        74 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~  135 (241)
T 1dhr_A           74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  135 (241)
T ss_dssp             TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCH
Confidence             3789999999864321    111   23345667776666666665542 24677777653

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.98  E-value=0.0095  Score=52.55  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceE-EEEe-cCCc---ccccc-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV-AGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v-~~~~-~~~d---~~~al-----   94 (340)
                      +.++|.|+||+|.+|++++..|+..+.  +|+++|.+..  .....++.     .++ .... +-+|   +++++     
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAEA   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHHh
Confidence            346899999999999999999999887  8999998752  22222331     112 2111 1122   22222     


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       .+.|+||+.||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|..
T Consensus        83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~  145 (254)
T 2wsb_A           83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSM  145 (254)
T ss_dssp             HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecc
Confidence             4789999999875321   122   23345566655    444555555443 4667766654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.97  E-value=0.018  Score=52.65  Aligned_cols=118  Identities=21%  Similarity=0.261  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cc-------c
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQ-------A   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a   93 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++.... ..++.... +-+|.   ++       .
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  899999886  344444554432 12333322 11222   11       2


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~  148 (340)
                      +...|++|..||.....   ..+.   ...+..|+.....+.+    .+.+.. .+.||+++.-.
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS~~  180 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSSIT  180 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECCSB
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeChh
Confidence            33679999999864321   2232   2345556655444444    445543 45666665443

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.97  E-value=0.0064  Score=53.87  Aligned_cols=155  Identities=18%  Similarity=0.228  Sum_probs=85.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (340)
                      +++.|+||+|.+|.+++..|+..|.  ++++.|.+.   .+....++....  .++.... +-+|   .++.++      
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999987  888988754   223333443322  1222221 1122   222232      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 019519           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~  164 (340)
                       ..|++|+.||.....   ..+.   ...+..|+.-...+.+.    +.+. ..+.||++|.-.           -..+ 
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~-----------~~~~-  147 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVV-----------GAVG-  147 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHH-----------HHHC-
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchh-----------hcCC-
Confidence             789999999975321   2222   23455666554444444    4544 356677665421           1223 


Q ss_pred             CCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       165 ~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      .|..-.++.+......+-+.++..++  +..|++..+.
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v~  183 (246)
T 3osu_A          148 NPGQANYVATKAGVIGLTKSAARELA--SRGITVNAVA  183 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            34444444443333345566666653  3455554443

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.0068  Score=54.96  Aligned_cols=156  Identities=14%  Similarity=0.155  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      .+.+.|+||+|.+|.+++..|+..|.  +|++.|.+.   ......++....  .++.... +-+|   .+++++     
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999987  899999754   223333444322  2333322 1122   222233     


Q ss_pred             --CCCEEEEcCCCC---CCC--CCCHH---HHHHHHHH----HHHHHHHHHHHhCC--CcEEEEecCCCCccHHHHHHHH
Q 019519           96 --DSDVVIIPAGVP---RKP--GMTRD---DLFNINAG----IVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVF  159 (340)
Q Consensus        96 --~aDiVi~~ag~~---~~~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p--~a~viv~tNP~d~~t~~~~~~~  159 (340)
                        ..|++|+.||..   ..+  ..+..   ..+..|+.    +.+.+.+.+.+...  .+.||++|......        
T Consensus       105 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------  176 (280)
T 4da9_A          105 FGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM--------  176 (280)
T ss_dssp             HSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC------------
T ss_pred             cCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc--------
Confidence              789999999873   111  12222   23334544    44556666655442  56777776544221        


Q ss_pred             HHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       160 ~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                         + .+..-.++.+......+-+.++..++  +..|++..+
T Consensus       177 ---~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  212 (280)
T 4da9_A          177 ---T-SPERLDYCMSKAGLAAFSQGLALRLA--ETGIAVFEV  212 (280)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ---C-CCCccHHHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence               1 22222333332222345566777663  445555444

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.96  E-value=0.00087  Score=61.20  Aligned_cols=64  Identities=19%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||+ |.+|+.++..|...++  +|.++|.++...  ..+....    +..   .+++.++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g----~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDAC--KEFQDAG----EQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999988887  899999876322  2233221    222   245567789999999985

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.96  E-value=0.0058  Score=54.91  Aligned_cols=118  Identities=15%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      .+++.|+||+|.+|.+++..|+..+.  +|++.|.+.  ......++.... ..++.... +-+|   .++.+       
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999987  899999875  223333343211 11233221 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ...|++|+.||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.||++|.-.
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  160 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAA  160 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchh
Confidence            3789999999975422   1222   234455554    4555555666555567788776543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.96  E-value=0.0057  Score=54.47  Aligned_cols=119  Identities=14%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC-CCceEEEEe-cCCcc---ccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYM-GNDQL---GQA------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~-~~~d~---~~a------   93 (340)
                      +.+.+.|+||+|.+|..++..|+..|.  +|+++|.++  ......++.... ...++.... +-+|.   ++.      
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999887  899999876  223333332211 001222221 11221   122      


Q ss_pred             -cCCCCEEEEcCCCCCCC--CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           94 -LEDSDVVIIPAGVPRKP--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        94 -l~~aDiVi~~ag~~~~~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                       +...|++|..||.....  ..+.   ...+..|+.-    .+.+.+.+++. ..+.||+++...
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  147 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRA  147 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC--
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHH
Confidence             23689999999974322  2221   2334555544    44444444444 456777776544

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.96  E-value=0.00071  Score=62.10  Aligned_cols=107  Identities=12%  Similarity=0.161  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC--CCCceEEEEecCCcccccc-CCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--NTRSEVAGYMGNDQLGQAL-EDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~--~~~~~v~~~~~~~d~~~al-~~aDiVi~~ag  105 (340)
                      |||+|||+ |.+|..++..|...+.  +|.++|.++..   .++...  ..+..+..     +..+++ +++|+||++.-
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~~g~~~~~~~~-----~~~~~~~~~~D~vilavk   71 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKT---ITYYTVPHAPAQDIVV-----KGYEDVTNTFDVIIIAVK   71 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEE---EEEESSTTSCCEEEEE-----EEGGGCCSCEEEEEECSC
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCc---EEEEecCCeeccceec-----CchHhcCCCCCEEEEeCC
Confidence            79999998 9999999999988776  89999987510   001111  11122321     223555 89999999851


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      .    .            -+.++++.++.+- ++..|+.+.|-.+....           +|.+++++-
T Consensus        72 ~----~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----------~~~~~v~~g  113 (294)
T 3g17_A           72 T----H------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-----------IPFKNVCQA  113 (294)
T ss_dssp             G----G------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-----------CCCSCEEEC
T ss_pred             c----c------------CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-----------CCCCcEEEE
Confidence            1    1            1233444455443 67788889999876531           566777653

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.96  E-value=0.0014  Score=59.16  Aligned_cols=114  Identities=25%  Similarity=0.365  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  .|++.|.++.  .....++.     .++.... +-+|.   ++.+      
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAERE   98 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998752  22222222     1222221 11221   1222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                       ...|++|+.||.....   ..+   ....+..|+.-    .+.+.+.+.+. ..+.||++|.-.
T Consensus        99 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS~~  162 (266)
T 3grp_A           99 MEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITSIV  162 (266)
T ss_dssp             HTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC-
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECCHH
Confidence             3789999999975321   121   23345566665    55666666554 346777776544

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.94  E-value=0.001  Score=60.32  Aligned_cols=114  Identities=17%  Similarity=0.187  Sum_probs=69.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++..     ++.... +-+|   .++.+       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~  100 (272)
T 4dyv_A           28 KKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD-----DALCVPTDVTDPDSVRALFTATVEKF  100 (272)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS-----CCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35788899999999999999999987  899999875  2223333321     111111 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p-~a~viv~tNP~  148 (340)
                      ...|++|..||....  +  ..+.   ...+..|+.-    .+.+.+.+.+..+ .+.||+++.-.
T Consensus       101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~  166 (272)
T 4dyv_A          101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSIS  166 (272)
T ss_dssp             SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSS
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchh
Confidence            389999999997432  1  2222   3345556554    5555666655542 57788776544

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.94  E-value=0.0044  Score=56.69  Aligned_cols=131  Identities=11%  Similarity=0.051  Sum_probs=74.1

Q ss_pred             cCccccCCCCC-CCCCCeEEEEcCCC--ChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCc
Q 019519           14 KPAGARGYSSE-SVPDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQ   89 (340)
Q Consensus        14 ~~~~~~~~~~~-~~~~~KI~IiGaaG--~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d   89 (340)
                      +++|-.+.... .++.+++.|+||+|  .+|..++..|+..|.  +|++.|.++. .....++......... ...+-+|
T Consensus        15 ~~~gp~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~Dv~d   91 (296)
T 3k31_A           15 QTQGPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKLT-VPCDVSD   91 (296)
T ss_dssp             ------CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCEE-EECCTTC
T ss_pred             cccCCccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEE-EEcCCCC
Confidence            44555443221 23456899999976  999999999999987  8999998862 2222222111101111 1111122


Q ss_pred             ---ccccc-------CCCCEEEEcCCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           90 ---LGQAL-------EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        90 ---~~~al-------~~aDiVi~~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                         .++++       ...|++|..||....     +  ..+   -...+..|+.-...+.+.+..+- ..+.||++|..
T Consensus        92 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~  170 (296)
T 3k31_A           92 AESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY  170 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence               22222       367999999997531     1  223   23456678887778887777654 35777777654

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.93  E-value=0.019  Score=52.11  Aligned_cols=120  Identities=13%  Similarity=0.147  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---------HHHHHHHhcCCCCceEEEEe-cCCc---ccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GNDQ---LGQ   92 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d---~~~   92 (340)
                      ++.+.+.|+||+|.+|..++..|+..+.  +|++.|.++.         +....++....  .++.... +-+|   .++
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~   82 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAA   82 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHH
Confidence            3456899999999999999999999987  8999998752         12233333222  2333322 1122   122


Q ss_pred             cc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCCC
Q 019519           93 AL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPVN  149 (340)
Q Consensus        93 al-------~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP~d  149 (340)
                      .+       ...|++|+.||.....   ..+.   ...+..|+.-...+.+.+..+-   ..+.||++|....
T Consensus        83 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  155 (285)
T 3sc4_A           83 AVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIR  155 (285)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhh
Confidence            22       3799999999975321   2222   3345678877777777666552   3567888876543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.93  E-value=0.0041  Score=56.20  Aligned_cols=116  Identities=12%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++....  .++.... +-+|   .++.++     
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  899999876  233334444322  1233221 1112   222222     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP  147 (340)
                        ..|++|+.||.....   ..+.   ...+..|+.-...+    .+.+.+. ..+.||+++..
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iV~isS~  163 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR-GYGKIVNIGSL  163 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEccH
Confidence              789999999975322   1232   23455565544444    5555444 34677777653

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.93  E-value=0.0082  Score=53.94  Aligned_cols=115  Identities=17%  Similarity=0.208  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.+...   .+....++....  .++.... +-+|   ..+.+       
T Consensus        27 k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            4688999999999999999999987  787764433   222233333322  2333332 1122   12222       


Q ss_pred             CCCCEEEEcCCCCCCCC----CCH---HHHHHHHHHHHHHH----HHHHHHh--CCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNINAGIVKDL----CSAIAKY--CPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g----~~r---~~~~~~N~~i~~~i----~~~i~~~--~p~a~viv~tNP  147 (340)
                      ...|+||+.||.....+    .+.   ...+..|+.-...+    .+.+.+.  ...+.||++|..
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  168 (272)
T 4e3z_A          103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSM  168 (272)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcch
Confidence            37799999999754321    222   33455565544444    4444432  235677777653

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.92  E-value=0.0048  Score=54.99  Aligned_cols=113  Identities=19%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.|.++.  .....++.     .++.... +-+|   +.++++     
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  11122221     1222221 1122   222233     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                        ..|++|+.||.....   ..+   ....+..|+.-.    +.+.+.+++.. .+.||++|..
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  139 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSA  139 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECch
Confidence              799999999875321   122   223445565444    46666666553 4667777653

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.0023  Score=63.36  Aligned_cols=98  Identities=13%  Similarity=0.116  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhc-CCCCceEEEEecCCccccccCC---CCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~al~~---aDiVi~~a  104 (340)
                      .||+|||+ |.+|++++..|+..++  +|.++|+++....  ++.. ......+..   ++++++++++   +|+||++.
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~~--~l~~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSKVD--HFLANEAKGKSIIG---ATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHHHH--HHHHTTTTTSSEEC---CSSHHHHHHTSCSSCEEEECC
T ss_pred             CCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHcccccCCCeEE---eCCHHHHHhcCCCCCEEEEEc
Confidence            59999998 9999999999999988  8999998763222  2222 100012433   2456666665   99999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                      -.+               ..++++++.+..+. |+.+||..+|-..
T Consensus        83 p~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~  113 (497)
T 2p4q_A           83 KAG---------------APVDALINQIVPLLEKGDIIIDGGNSHF  113 (497)
T ss_dssp             CSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             CCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence            221               12344445565554 5677777777653

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.91  E-value=0.0041  Score=55.57  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=72.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCccc----------ccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG----------QAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al   94 (340)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.++.  .....++.     .++.... +-+|.+          +.+
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999987  8999998752  22222232     1222221 112221          122


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                      ...|++|+.||.....   ..+   -...+..|+.-...+.+.+..+- ..+.||++|...
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  141 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVA  141 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChh
Confidence            3789999999975422   122   23456778877777777776553 356777776543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.91  E-value=0.0041  Score=56.08  Aligned_cols=114  Identities=15%  Similarity=0.205  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------cC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~   95 (340)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++....  .++.... +-+|.   ++.       +.
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999987  899999876  233344444332  2333221 11221   122       23


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|..||.....   ..+.   ...+..|+.-.    +.+.+.+.+. ..+.||++|.-
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~  141 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIGSI  141 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEcCH
Confidence            789999999975321   1222   23445565544    4455555544 35677777654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.90  E-value=0.0017  Score=56.90  Aligned_cols=111  Identities=17%  Similarity=0.194  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------C
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~   95 (340)
                      ++|.|+||+|.+|+.++..|+..+.  +|+++|.+..  .....++.      ++.... +-+|   +++++       .
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEAFG   77 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999887  8999998652  11122221      111111 1122   11222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      +.|+||+.+|.....   ..+   ....+..|+....    .+.+.+.+. ..+.||++|...
T Consensus        78 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~  139 (234)
T 2ehd_A           78 ELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSLA  139 (234)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCTT
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCch
Confidence            789999999864321   122   2334556665544    444555433 346777776543

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.89  E-value=0.0038  Score=55.53  Aligned_cols=118  Identities=18%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (340)
                      +.++|.|+||+|.+|++++..|+..+.  +|+++|.+.  ......++.... ..++.... +-+|.   +++       
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999886  899999854  222222332110 11233221 11221   122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  147 (340)
                      +...|+||+.||.....   ..+   ....+..|+.....+.+.    +.+....+.||++|..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  153 (265)
T 1h5q_A           90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSM  153 (265)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCc
Confidence            23489999999875321   122   223455666555444444    4433434667766643

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.89  E-value=0.00091  Score=59.63  Aligned_cols=153  Identities=18%  Similarity=0.232  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCc---ccccc-------C
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQ---LGQAL-------E   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d---~~~al-------~   95 (340)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.++.  +....++....  ..+..  +-+|   .++++       .
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~--Dv~d~~~v~~~~~~~~~~~g   82 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNG--KGMAL--NVTNPESIEAVLKAITDEFG   82 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE--EEEEC--CTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc--eEEEE--eCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999987  8999998762  22233333211  01111  1122   22223       3


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~  165 (340)
                      ..|++|+.||.....   ..+.   ...+..|+.-...+    .+.+.+. ..+.||++|...           -..+ .
T Consensus        83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~-----------~~~~-~  149 (248)
T 3op4_A           83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVGSVV-----------GTMG-N  149 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHH-----------HHHC-C
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchh-----------hcCC-C
Confidence            789999999975422   1222   23455566544444    4444433 356777766421           1122 3


Q ss_pred             CCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       166 ~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      +..-.++.+......+-+.++..++  +..|++-.+
T Consensus       150 ~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  183 (248)
T 3op4_A          150 AGQANYAAAKAGVIGFTKSMAREVA--SRGVTVNTV  183 (248)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEE
Confidence            4433444433222345566676663  345555444

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.89  E-value=0.0087  Score=54.15  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++....  .++.... +-+|   ..+.+      
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999987  899999986  344444444322  1233222 1122   11222      


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ...|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|..
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~  169 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIGSI  169 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCH
Confidence            2689999999864322   2232   2334556554    44444444544 35677777653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.88  E-value=0.01  Score=53.38  Aligned_cols=117  Identities=15%  Similarity=0.098  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|.++.  .....++....  .++.... +-+|.   .+++      
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  22233343222  1233221 11221   1222      


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCCC
Q 019519           95 --EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP~  148 (340)
                        ...|++|+.||.....   ..+.   ...+..|+.-...+.    +.+++. ..+.||++|...
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~  160 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIA  160 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGG
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHh
Confidence              5789999999875321   1222   233445655444444    444443 346777776543

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.88  E-value=0.0056  Score=54.99  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      +.+++.|+||+|.+|..++..|+..+.  +|+++|.++.  .....++.     .++.... +-+|   .++++      
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEE   77 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  11111221     1232221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (340)
                       ...|++|+.||.....   ..+.   ...+..|+.-...+.+.+..+- ..+.||++|.....
T Consensus        78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  141 (263)
T 2a4k_A           78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL  141 (263)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc
Confidence             2569999999865321   1222   3456678877777777766553 24677777766543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.87  E-value=0.0011  Score=59.38  Aligned_cols=67  Identities=13%  Similarity=0.222  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+|||+|||+ |.+|..++..|...+.  ++.++|.++...  .++.+.. .  +..   .+|+.++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~--~~~~~~~-g--~~~---~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERS--KEIAEQL-A--LPY---AMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHH--HHHHHHH-T--CCB---CSSHHHHHHTCSEEEECS
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHHc-C--CEe---eCCHHHHHhcCCEEEEEe
Confidence            3579999997 9999999999987775  899999875221  1222110 0  111   245667788999999986

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.87  E-value=0.0033  Score=58.08  Aligned_cols=65  Identities=20%  Similarity=0.337  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+||++||- |.+|+.++..|+..++  +|..||++.  ..+.++.....  .  .   ..++.++.++||+||.+-
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~--~~~~~l~~~Ga--~--~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ--SAVDGLVAAGA--S--A---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH--HHHHHHHHTTC--E--E---CSSHHHHHTTCSEEEECC
T ss_pred             cCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCH--HHHHHHHHcCC--E--E---cCCHHHHHhcCCceeecC
Confidence            569999998 9999999999999998  999999874  22333443321  1  1   134678899999999974

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.87  E-value=0.0097  Score=53.75  Aligned_cols=118  Identities=19%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC-------------C--cHHHHHHHhcCCCCceEEEEe-cCCcc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-------------N--TPGVAADVGHINTRSEVAGYM-GNDQL   90 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~-------------~--~~~~~~dl~~~~~~~~v~~~~-~~~d~   90 (340)
                      +.+.+.|+||+|.+|.+++..|+..|.  +|+++|.+             +  .+....++....  .++.... +-+|.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDD   89 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCH
Confidence            346899999999999999999999987  89999973             1  122223333322  2333221 11221


Q ss_pred             ---cccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           91 ---GQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        91 ---~~al-------~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                         ++.+       ...|++|+.||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.||++|...
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA  167 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchh
Confidence               1222       3789999999975321   1222   234445554    4555555566655567788776543

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.86  E-value=0.0084  Score=53.46  Aligned_cols=116  Identities=12%  Similarity=0.059  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      ++++.|+||+|.+|.+++..|+..|.  +|++.+.+..  .....++.... ..++.... +-+|   ..+++       
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999987  8999887652  11122221111 12333332 1122   22223       


Q ss_pred             CCCCEEEEcCCC--CC-CC--CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGV--PR-KP--GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~--~~-~~--g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  147 (340)
                      ...|++|+.||.  .. .+  ..+.   ...+..|+.....+.+.    +++. ..+.||++|..
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~  147 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQ  147 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeec
Confidence            278999999993  21 11  1222   33455666554444444    4544 34667766543

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.85  E-value=0.0022  Score=56.99  Aligned_cols=114  Identities=20%  Similarity=0.210  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---ccccc-------CCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQAL-------EDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~al-------~~a   97 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.++....  ++.+.. ...... .+-+|   .++++       ...
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~-~D~~~~~~~~~~~~~~~~~~g~i   78 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLR--EAAEAV-GAHPVV-MDVADPASVERGFAEALAHLGRL   78 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHTT-TCEEEE-CCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHc-CCEEEE-ecCCCHHHHHHHHHHHHHHcCCC
Confidence            45899999999999999999999887  8999998752111  111110 011111 11122   22222       258


Q ss_pred             CEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        98 DiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                      |++|+.||.....   ..+   ....+..|+.-...+.+.+..+   ...+.||++|..
T Consensus        79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~  137 (245)
T 1uls_A           79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR  137 (245)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence            9999999975321   122   2344566776666665555443   234677777643

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.84  E-value=0.0045  Score=57.01  Aligned_cols=64  Identities=19%  Similarity=0.329  Sum_probs=43.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .||++||. |.+|+.++..|+..++  +|+.||+++.+  +.++....    ...   ..++.+++++||+||++.
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASK--AEPLTKLG----ATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECC
T ss_pred             CcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcC----CeE---eCCHHHHHhcCCceeeec
Confidence            48999998 9999999999999998  99999987522  11232222    122   135678899999999974

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.84  E-value=0.0035  Score=55.82  Aligned_cols=111  Identities=12%  Similarity=0.171  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---cccc-------cC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (340)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|.++.  .....++..     ++.... +-+|   .++.       +.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-----NLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3789999999999999999999887  8999998752  222223321     222221 1122   1122       23


Q ss_pred             CCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPR--KP--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~--~~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|+.||...  .+  ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|..
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~  135 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGST  135 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEccc
Confidence            7899999999752  11  2222   2345556544    44555555444 34667777654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.84  E-value=0.001  Score=59.64  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||+ |.+|+.++..|...++  +|.++|.........++....    +.     +++.+++++||+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEEC
Confidence            58999998 9999999999998887  899988732222222232211    11     13457789999999985

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.84  E-value=0.0066  Score=55.11  Aligned_cols=77  Identities=18%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----cc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----GQ-------A   93 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----~~-------a   93 (340)
                      .+.|.|+||+|.+|.+++..|+..|.  .|++.|.++  ......++..... .++.... +-+|.    ..       .
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  899999876  2333445544321 2344332 11232    11       1


Q ss_pred             cCCCCEEEEcCCCC
Q 019519           94 LEDSDVVIIPAGVP  107 (340)
Q Consensus        94 l~~aDiVi~~ag~~  107 (340)
                      +...|++|+.||..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            24799999999864

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.84  E-value=0.016  Score=52.41  Aligned_cols=117  Identities=15%  Similarity=0.196  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (340)
                      ..+++.|+||+|.+|.+++..|+..|.  +|++.|.+.   ......++.... ..++.... +-+|   .++++     
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999854   223333443321 12333322 1122   11222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 019519           95 --EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP  147 (340)
                        ...|++|+.||.....   ..+.   ...+..|+.....+.    +.+.+. ..+.||++|..
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  164 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIASA  164 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCc
Confidence              3789999999975322   1232   234555655444444    444544 34667777653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.84  E-value=0.02  Score=51.17  Aligned_cols=118  Identities=13%  Similarity=0.080  Sum_probs=70.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---ccc-------c
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------L   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l   94 (340)
                      .+.+.|+||+|.+|..++..|+..|.  .|++.|.++  ......++.......++.... +-+|.   .+.       +
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999987  899999876  233333443311111233221 11221   111       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  147 (340)
                      ...|++|+.||.....   ..+.   ...+..|+.-...+.+.+..+   ...+.||++|..
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~  147 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSL  147 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCc
Confidence            3679999999974321   2232   334566776666665555433   235677777643

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.82  E-value=0.00064  Score=64.43  Aligned_cols=71  Identities=24%  Similarity=0.295  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag  105 (340)
                      ++|||+|+|| |+||+.++..|... .  ++.+.|++....  ..+.+..  ..+.... +...+.+.++++|+||.+.+
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~~--~~~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNENL--EKVKEFA--TPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHHH--HHHTTTS--EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHHH--HHHhccC--CcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            3589999998 99999999888654 3  899999875221  1222211  1222211 11235567899999999874

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.82  E-value=0.0027  Score=57.06  Aligned_cols=147  Identities=15%  Similarity=0.098  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------CC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~   96 (340)
                      .++|.|+||+|.+|..++..|+..+.  +|+++|.++..         .  .++.... +-+|   +++++       ..
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~---------~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   74 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPG---------E--AKYDHIECDVTNPDQVKASIDHIFKEYGS   74 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCC---------S--CSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCccc---------C--CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999987  89999987522         0  0111111 1112   12222       37


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 019519           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~  167 (340)
                      .|++|..||.....   ..+   ....+..|+.....+.+.+..+   ...+.||++|.....           .+ .+.
T Consensus        75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~-----------~~-~~~  142 (264)
T 2dtx_A           75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQAS-----------II-TKN  142 (264)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGT-----------SC-CTT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhc-----------cC-CCC
Confidence            99999999865321   122   2344566766655555554433   234677777654321           11 222


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      .-.++.+......+-+.++..++  +. |++.++.
T Consensus       143 ~~~Y~~sK~a~~~~~~~la~e~~--~~-i~vn~v~  174 (264)
T 2dtx_A          143 ASAYVTSKHAVIGLTKSIALDYA--PL-LRCNAVC  174 (264)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHhc--CC-cEEEEEE
Confidence            22333332222345566677664  33 6655554

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.82  E-value=0.011  Score=53.01  Aligned_cols=114  Identities=16%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      .+.+.|+||+|.+|..++..|+..|.  .|++.|.+..   .....++....  .++.... +-+|.   ++++      
T Consensus        25 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           25 KRVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLAD  100 (269)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            35688999999999999999999987  8999986552   22222333222  1222221 11222   1222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  146 (340)
                       ...|++|+.||.....   ..+.   ...+..|+.....+    .+.+.+. ..+.||++|.
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS  162 (269)
T 3gk3_A          101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGS  162 (269)
T ss_dssp             HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence             3789999999875321   2232   23445565544444    4444433 3567777764

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.81  E-value=0.0053  Score=54.94  Aligned_cols=155  Identities=16%  Similarity=0.135  Sum_probs=83.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEE-eCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (340)
                      .+++.|+||+|.+|.+++..|+..|.  ++++. +.++  ......++....  .++.... +-+|.   ++.+      
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  88886 5554  233334444332  2333322 11221   2222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg  163 (340)
                       ...|++|+.||.....   ..+.   ...+..|+.-...+.+.+    .+. ..+.||++|.....           .+
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~-----------~~  147 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSISSLGSI-----------RY  147 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEEEGGGT-----------SB
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhC-----------CC
Confidence             3569999999864321   1222   234556665554444444    433 35677777643221           11


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                       .+..-.++.+......+-+.++..++  +..|++-.+
T Consensus       148 -~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  182 (258)
T 3oid_A          148 -LENYTTVGVSKAALEALTRYLAVELS--PKQIIVNAV  182 (258)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             22222333332222345566777663  445554444

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.81  E-value=0.0031  Score=57.07  Aligned_cols=116  Identities=14%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEe-cCCcc---cccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYM-GNDQL---GQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d~---~~al------   94 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|.++  ......++..... ..++.... +-+|.   ++++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  899999875  2222334433211 01333322 11221   1222      


Q ss_pred             -CCCCEEEEcCCCCCC-C------CCC---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRK-P------GMT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~-~------g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  147 (340)
                       ...|++|+.||.... +      ..+   ....+..|+.....+.+.    +.+..  +.||++|.-
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~  149 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSI  149 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCc
Confidence             268999999986532 1      122   223445565544444444    43332  677777653

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.81  E-value=0.0037  Score=56.36  Aligned_cols=112  Identities=15%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------C
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~   95 (340)
                      ..+++.|+||+|.+|..++..|+..|.  +|+++|.+...  ..++...    .+.... +-+|   .++++       .
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~--~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g   86 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVER--LKALNLP----NTLCAQVDVTDKYTFDTAITRAEKIYG   86 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHH--HHTTCCT----TEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHhhcC----CceEEEecCCCHHHHHHHHHHHHHHCC
Confidence            345899999999999999999999987  89999986421  1111111    222211 1122   12222       2


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..|++|+.||.....   ..+.   ...+..|+.-...    +.+.+.+.. .+.||++|.-
T Consensus        87 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS~  147 (266)
T 3p19_A           87 PADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISSI  147 (266)
T ss_dssp             SEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcCh
Confidence            789999999975321   2222   2345566654444    555555443 4667766653

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.80  E-value=0.0079  Score=54.05  Aligned_cols=114  Identities=17%  Similarity=0.198  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+.+..   +....++....  .++.... +-+|   ..+.+      
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  8999998541   22223333322  1233322 1122   12222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  146 (340)
                       ...|++|+.||.....   ..+.   ...+..|+..    .+.+.+.+++. +.+.||++|.
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  166 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS-RFGSVVNVAS  166 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEec
Confidence             3789999999975422   1222   3344555554    44455555544 3466676654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.80  E-value=0.013  Score=53.43  Aligned_cols=117  Identities=18%  Similarity=0.145  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc----HHHHHHHhcCCCCceEEEEe-cCCcc---ccc-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM-GNDQL---GQA-----   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-----   93 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+..    ......+....  .++.... +-+|.   ++.     
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            446899999999999999999999987  8999988631    12222222222  2233221 11221   111     


Q ss_pred             --cCCCCEEEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           94 --LEDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        94 --l~~aDiVi~~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                        +...|++|+.||.....    ..+   ....+..|+.-...+.+.+..+- ..+.||++|.-
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence              24789999999974321    122   24456778888888888877664 35677777654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.79  E-value=0.0021  Score=58.96  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhC-----C-CcceEEEEeCCCcHHHHHHHhc-CCC---C--c-----eEEEEecCCcc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLN-----P-LVSRLALYDIANTPGVAADVGH-INT---R--S-----EVAGYMGNDQL   90 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~-----~-~~~el~L~D~~~~~~~~~dl~~-~~~---~--~-----~v~~~~~~~d~   90 (340)
                      +|||+|||+ |.+|+.++..|...     + +  +|.++|. +  .....+.+ ...   .  .     ++..+   ++ 
T Consensus         8 ~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~-   77 (317)
T 2qyt_A            8 PIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCVT---DN-   77 (317)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEEE---SC-
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceEe---cC-
Confidence            479999998 99999999999877     6 5  8999997 3  22222322 110   0  0     01111   23 


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 019519           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~  150 (340)
                      .++++++|+||++...+    .            +.++++.+..+- |+..|+.++|..+.
T Consensus        78 ~~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           78 PAEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             HHHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             ccccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            35578999999986322    1            233445555443 56777777887654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.78  E-value=0.0099  Score=54.94  Aligned_cols=118  Identities=14%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--------------cHHHHHHHhcCCCCceEEEEe-cCCc--
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYM-GNDQ--   89 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d--   89 (340)
                      +.+.+.|+||+|.+|..++..|+..|.  +|+++|.+.              .......+....  .++.... +-+|  
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~  120 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLA  120 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHH
Confidence            346889999999999999999999987  899998752              111122222222  2333322 1122  


Q ss_pred             -ccccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           90 -LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        90 -~~~al-------~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                       .++.+       ...|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+....+.||++|...
T Consensus       121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~  197 (317)
T 3oec_A          121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTV  197 (317)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHH
Confidence             12222       3789999999975321   2232   2344556544    444555555555567788776543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.77  E-value=0.0055  Score=56.15  Aligned_cols=119  Identities=11%  Similarity=0.191  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEe-cCCc---ccccc-----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYM-GNDQ---LGQAL-----   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d---~~~al-----   94 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++..... ..++.... +-+|   .++++     
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  899999875  2222333432211 01233322 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC-----CCC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 019519           95 --EDSDVVIIPAGVPRKP-----GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~~-----g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP  147 (340)
                        ...|++|..||.....     ..+   ....+..|+.....+.+.+..+-  ..+.||++|.-
T Consensus       103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~  167 (297)
T 1xhl_A          103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSI  167 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCc
Confidence              2789999999864321     122   22345556554444444433321  12677777643

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.77  E-value=0.011  Score=53.41  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--------------cHHHHHHHhcCCCCceEEEEe-cCCc--
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYM-GNDQ--   89 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d--   89 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|.++              .......+....  .++.... +-+|  
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~   84 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRA   84 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            346899999999999999999999987  899999862              111122222222  2233221 1122  


Q ss_pred             -ccccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 019519           90 -LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (340)
Q Consensus        90 -~~~al-------~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  147 (340)
                       .++.+       ...|++|+.||.....   ..+.   ...+..|+.-...+.+.    +.+. ..+.||++|..
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  159 (281)
T 3s55_A           85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTVSSM  159 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCh
Confidence             22222       3789999999975321   2232   33455666555444444    4444 35677777654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.76  E-value=0.0035  Score=56.04  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCC--CChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCc---ccccc------
Q 019519           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQ---LGQAL------   94 (340)
Q Consensus        27 ~~~KI~IiGaa--G~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~~al------   94 (340)
                      +.++|.|+||+  |.+|.+++..|+..+.  +|++.|.++ ......++........... .+-+|   .++.+      
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFP-CDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEE-CCCCCHHHHHHHHHHHHHH
Confidence            45799999998  8999999999999987  899999875 2222223321111111111 11122   22222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--C-CC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~-----~--g-~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                       ...|++|+.||....     +  . .+   ....+..|+.....+.+.+..+- +.+.||+++..
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  155 (271)
T 3ek2_A           90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYL  155 (271)
T ss_dssp             CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred             cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecc
Confidence             267999999986432     1  1 23   23455677777777777766543 35677777643

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.73  E-value=0.0083  Score=54.13  Aligned_cols=49  Identities=20%  Similarity=0.353  Sum_probs=33.3

Q ss_pred             cCccccCCCCC-CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           14 KPAGARGYSSE-SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        14 ~~~~~~~~~~~-~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +..|+.+.+.. +++.+++.|+||+|.+|.+++..|+..|.  +|++.|.+.
T Consensus        15 ~~~gp~~m~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           15 QTQGPGSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             ---------CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             cccCcchhhhhhccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            44555554322 23456899999999999999999999987  899999875

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.72  E-value=0.007  Score=56.72  Aligned_cols=63  Identities=22%  Similarity=0.263  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+||+|||+ |.+|.+++..|...++  +|+++|.+...  ..+.+.   .    +...    ++.+++++||+||++.
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~a~~~---G----~~~~----~~~e~~~~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAKAEAH---G----LKVA----DVKTAVAAADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHT---T----CEEE----CHHHHHHTCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHHHC---C----CEEc----cHHHHHhcCCEEEEeC
Confidence            469999998 9999999999998886  89999987532  222211   1    1221    3467889999999985

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.72  E-value=0.019  Score=50.45  Aligned_cols=111  Identities=19%  Similarity=0.244  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcccc-------ccCCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ-------ALEDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~-------al~~aDiVi  101 (340)
                      +++.|+||+|.+|..++..|+..+.  +|++.|.+... ...++.   . ..+.......+..+       .+.+.|++|
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~---~-~~~~~D~~~~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG---A-VPLPTDLEKDDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT---C-EEEECCTTTSCHHHHHHHHHHHHTSCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC---c-EEEecCCchHHHHHHHHHHHHHcCCCCEEE
Confidence            4899999999999999999999887  89999987632 222231   1 01111100011112       234799999


Q ss_pred             EcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519          102 IPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       102 ~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +.||.....   ..+.   ...+..|+..    .+.+.+.+.+.. .+.||++|..
T Consensus        76 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  130 (239)
T 2ekp_A           76 HAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGSV  130 (239)
T ss_dssp             ECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECch
Confidence            999864321   2222   2344455544    444444444443 4667777643

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.72  E-value=0.0046  Score=55.22  Aligned_cols=116  Identities=15%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH---HHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~---~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.++..   ....++.... ..++.... +-+|   +++++      
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  89999987622   1222332110 11232221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       ...|++|+.||.....   ..+.   ...+..|+.    ..+.+.+.+++.. .+.||++|..
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  143 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASA  143 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcH
Confidence             3789999999975321   1222   334555665    4455555555443 4677777654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.71  E-value=0.0061  Score=54.55  Aligned_cols=157  Identities=15%  Similarity=0.160  Sum_probs=89.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEE-eCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (340)
                      .+++.|+||+|.+|.+++..|+..|.  +|++. +.++  ......++.....  ++.... +-+|   .++++      
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLGR--SALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTTS--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999987  88888 4444  2223334443321  222221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCC--CCC--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 019519           95 -EDSDVVIIPAGVP--RKP--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (340)
Q Consensus        95 -~~aDiVi~~ag~~--~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~  165 (340)
                       ...|++|+.||..  ..+  ..+.   ...+..|+.-...+.+.+..+- +.+.||++|....          ...+ .
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~----------~~~~-~  152 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG----------RDGG-G  152 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH----------HHCC-S
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHh----------ccCC-C
Confidence             2789999999854  222  2232   3456778887777777776653 2456776664321          1122 3


Q ss_pred             CCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       166 ~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      +..-.++.+......+-+.++..++  +. |++-.+.
T Consensus       153 ~~~~~Y~asKaa~~~l~~~la~e~~--~~-I~vn~v~  186 (259)
T 3edm_A          153 PGALAYATSKGAVMTFTRGLAKEVG--PK-IRVNAVC  186 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHC--CC-CEEEEEE
Confidence            3333344433223346667777775  33 6654443

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.70  E-value=0.0054  Score=54.26  Aligned_cols=109  Identities=12%  Similarity=0.076  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEE-e--CCCc--HHHHHHHhcCCCCceEEEEecCCccccc-------cCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-D--IANT--PGVAADVGHINTRSEVAGYMGNDQLGQA-------LED   96 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~-D--~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a-------l~~   96 (340)
                      +++.|+||+|.+|..++..|+..+.  +|++. |  .+..  .....++    ...++.   ...+.++.       +..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~----~~~~~~---~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN----PGTIAL---AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS----TTEEEC---CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh----CCCccc---CHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999987  89999 5  6642  2222222    111111   12233232       236


Q ss_pred             CCEEEEcCCCCCC----C--CCCH---HHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 019519           97 SDVVIIPAGVPRK----P--GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        97 aDiVi~~ag~~~~----~--g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  147 (340)
                      .|++|+.||....    +  ..+.   ...+..|+.-...    +.+.+.+. ..+.||++|.-
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~  135 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITSS  135 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECCh
Confidence            8999999986533    1  2222   3345566654444    44444433 35677777654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.70  E-value=0.013  Score=53.15  Aligned_cols=116  Identities=16%  Similarity=0.200  Sum_probs=70.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-------   94 (340)
                      .+.+.|+||+|.+|.+++..|+..|.  +|+++|.+.  ......++....  .++.... +-+|.   ++++       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35789999999999999999999987  899999876  233344454332  2233222 11221   1222       


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ...|++|+.||....  +  ..+.   ...+..|+.-..    .+.+.+++. ..+.||++|.-.
T Consensus       104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~  167 (283)
T 3v8b_A          104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSIN  167 (283)
T ss_dssp             SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSB
T ss_pred             CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcChh
Confidence            379999999997422  2  2232   234555655444    444444544 356777776543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.69  E-value=0.016  Score=52.09  Aligned_cols=155  Identities=13%  Similarity=0.106  Sum_probs=88.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc-------
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL-------   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-------   94 (340)
                      +.+.|+||+|.+|..++..|+..|.  ++++.+.+.   .+....++....  .++.... +-+|.   ++.+       
T Consensus        28 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999887  888875543   223333333322  1222221 11222   2222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~  167 (340)
                      ...|++|..||.....   ..+   -...+..|+.-...+.+.+..+- +.+.||++|....           ..+ .|.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~~-~~~  171 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQV-----------GLL-HPS  171 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHH-----------HHC-CTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhh-----------ccC-CCC
Confidence            3789999999875321   122   23445678777777666665543 3567777764321           112 333


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .-.++.+......+-+.++..++  +..|++-.+
T Consensus       172 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (267)
T 3u5t_A          172 YGIYAAAKAGVEAMTHVLSKELR--GRDITVNAV  203 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEE
Confidence            33444433333446677777774  455655444

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.02  Score=52.20  Aligned_cols=160  Identities=14%  Similarity=0.152  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cccc------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA------   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------   93 (340)
                      +.+++.|+||+|.+|..++..|+..+. ...|++.|.+.  ......++.......++.... +-+|   .+++      
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999987653 23799999875  233333343221112333322 1122   1122      


Q ss_pred             -cCCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHH
Q 019519           94 -LEDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (340)
Q Consensus        94 -l~~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  161 (340)
                       +...|++|..||.....    ..+.   ...+..|+.-..    .+.+.+++. ..+.||+++.....           
T Consensus       112 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~-----------  179 (287)
T 3rku_A          112 EFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNLGSIAGR-----------  179 (287)
T ss_dssp             GGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT-----------
T ss_pred             hcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECChhhc-----------
Confidence             23689999999964321    2232   334555655444    444444544 35667777653321           


Q ss_pred             hCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       162 sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .+ .+..-.++.+......+-+.++..++  +..|++-.+
T Consensus       180 ~~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  216 (287)
T 3rku_A          180 DA-YPTGSIYCASKFAVGAFTDSLRKELI--NTKIRVILI  216 (287)
T ss_dssp             SC-CTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             CC-CCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence            11 22222333332222345666777764  455655444

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.68  E-value=0.007  Score=53.53  Aligned_cols=113  Identities=17%  Similarity=0.174  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccc------cccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLG------QALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~------~al~~aDiV  100 (340)
                      .++|.|+||+|.+|..++..|+..+.  +|++.|.++..  ..++.+..   ++.... +-+|.+      +.+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~--~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHhcc---CceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            46899999999999999999999987  89999986421  11122111   222221 112221      124578999


Q ss_pred             EEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCC
Q 019519          101 IIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       101 i~~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP~  148 (340)
                      |+.||.....   ..+.   ...+..|+.....+    .+.+.+. ..+.||++|...
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~  135 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVA  135 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSB
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEechH
Confidence            9999875321   1222   23345565544444    4444433 356777776543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.68  E-value=0.0061  Score=55.43  Aligned_cols=115  Identities=17%  Similarity=0.108  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---cccccC---CCCE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE---DSDV   99 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~---~aDi   99 (340)
                      +.++|.|+||+|.+|.+++..|+..+.  +|++.|.++....  ++.+.. ..++.... +-+|   ..++++   ..|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGE--AAARTM-AGQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            456899999999999999999999987  8999998752221  121111 12344332 1122   222333   5699


Q ss_pred             EEEcCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          100 VIIPAGVPRKP----GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       100 Vi~~ag~~~~~----g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +|+.||.....    .+.-...+..|......+.+.+..+-.+ .||++|..
T Consensus        90 lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~  140 (291)
T 3rd5_A           90 LINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSM  140 (291)
T ss_dssp             EEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCG
T ss_pred             EEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeech
Confidence            99999974322    1223456778888888888887766433 56666543

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.67  E-value=0.0094  Score=53.08  Aligned_cols=115  Identities=13%  Similarity=0.191  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH----HHHHHHhcCCCCceEEEEe-cCCcc---ccccC-----
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYM-GNDQL---GQALE-----   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~----~~~~dl~~~~~~~~v~~~~-~~~d~---~~al~-----   95 (340)
                      +++.|+||+|.+|..++..|+..+.  +|++.|.+...    ....++....  .++.... +-+|.   +++++     
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999998887  89999987532    1223343322  2333322 11222   22232     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                        ..|++|+.||.....   ..+.   ...+..|+..    .+.+.+.+.+....+.||++|..
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  142 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASI  142 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcc
Confidence              789999999865321   1222   2345556554    44445555444433677777654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.67  E-value=0.01  Score=54.96  Aligned_cols=116  Identities=20%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC----------C--cHHHHHHHhcCCCCceEEEEe-cCCcc---
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA----------N--TPGVAADVGHINTRSEVAGYM-GNDQL---   90 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~----------~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---   90 (340)
                      +.+.+.|+||+|.+|..++..|+..|.  +|++.|.+          .  ......++....  .++.... +-+|.   
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v  101 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQA  101 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHH
Confidence            345789999999999999999999987  99999976          2  233333444332  2333322 11221   


Q ss_pred             ccccC-------CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHH----HHHhC-----CCcEEEEecC
Q 019519           91 GQALE-------DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSA----IAKYC-----PNAIVNMISN  146 (340)
Q Consensus        91 ~~al~-------~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~-----p~a~viv~tN  146 (340)
                      .+.++       ..|++|+.||.....   ..+   -...+..|+.-...+.+.    +.+..     +.+.||++|.
T Consensus       102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS  179 (322)
T 3qlj_A          102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS  179 (322)
T ss_dssp             HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence            12222       789999999975322   122   233456676644444443    33221     1367777764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.66  E-value=0.0075  Score=54.65  Aligned_cols=115  Identities=11%  Similarity=0.081  Sum_probs=70.9

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcC-CCCceEEEEecCCc---ccccc------
Q 019519           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVAGYMGNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaa--G~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~-~~~~~v~~~~~~~d---~~~al------   94 (340)
                      .++|.|+||+  |.+|..++..|+..|.  +|++.|.++. .....++... ....-+..  +-+|   .++++      
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKC--DVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEEC--CTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEc--CCCCHHHHHHHHHHHHHH
Confidence            4589999998  8999999999999887  8999998752 2222333221 10011111  1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  146 (340)
                       ...|++|+.||....     +  ..+   ....+..|+.....+++.+..+-  ..+.||++|.
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence             378999999997532     1  222   23456778877777777776553  2467777765

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.65  E-value=0.0036  Score=56.02  Aligned_cols=110  Identities=22%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cccc-------cCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-------LED   96 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-------l~~   96 (340)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.|.+....     ...   ..+..  +-+|   .+++       +..
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~~---~~~~~--Dl~d~~~v~~~~~~~~~~~g~   87 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPP-----EGF---LAVKC--DITDTEQVEQAYKEIEETHGP   87 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCC-----TTS---EEEEC--CTTSHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhh-----ccc---eEEEe--cCCCHHHHHHHHHHHHHHcCC
Confidence            346899999999999999999999987  899999865210     000   01111  1111   1122       235


Q ss_pred             CCEEEEcCCCCCCC------CCCHHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCCC
Q 019519           97 SDVVIIPAGVPRKP------GMTRDDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        97 aDiVi~~ag~~~~~------g~~r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~d  149 (340)
                      .|++|..||.....      .+.....+..|+.....+.+    .+.+. ..+.||++|.-..
T Consensus        88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~  149 (253)
T 2nm0_A           88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVVG  149 (253)
T ss_dssp             CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchhh
Confidence            79999999864321      12344556667665544444    44433 3567777776544

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.64  E-value=0.015  Score=52.72  Aligned_cols=116  Identities=17%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|.++  ......++....  .++.... +-+|   ..+.+       
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999987  899999876  233334443322  2333321 1122   12222       


Q ss_pred             CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP~  148 (340)
                      ...|++|..||.....    ..+.   ...+..|+.-...+.+    .+.+. ..+.||+++...
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  147 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSFV  147 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCSB
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcChh
Confidence            3789999999864221    2222   2344556554444444    44433 356777776543

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.63  E-value=0.014  Score=53.09  Aligned_cols=152  Identities=15%  Similarity=0.150  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEE-EEeCCCcHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~-L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      +++|||+|+|++|.+|+.++..+...+-. +|+ .+|.++......|+.....  ...+..+   +|+++.++++|+||.
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~-elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~---~dl~~~l~~~DvVID   78 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQ---SSLDAVKDDFDVFID   78 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEE---SCSTTTTTSCSEEEE
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCchhhhhhhHHHHcCCCcCCceec---CCHHHHhcCCCEEEE
Confidence            35689999998899999998877754321 655 7887642111112221110  1122222   466777889999995


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chh---H
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD---V  178 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld---~  178 (340)
                      .. .|               ....++++.+.+.+.+   +++..| +....-...+.+.+...  ..++... .+.   -
T Consensus        79 ft-~p---------------~~~~~~~~~a~~~G~~---vVigTt-G~~~e~~~~L~~~a~~~--~vv~a~N~siGvn~~  136 (273)
T 1dih_A           79 FT-RP---------------EGTLNHLAFCRQHGKG---MVIGTT-GFDEAGKQAIRDAAADI--AIVFAANFSVGVNVM  136 (273)
T ss_dssp             CS-CH---------------HHHHHHHHHHHHTTCE---EEECCC-CCCHHHHHHHHHHTTTS--CEEECSCCCHHHHHH
T ss_pred             cC-Ch---------------HHHHHHHHHHHhCCCC---EEEECC-CCCHHHHHHHHHhcCCC--CEEEEecCcHHHHHH
Confidence            43 12               1334555555555433   345555 22222222333333211  1333331 121   2


Q ss_pred             HHHHHHHHHHcCCCCCCCceeEEEecCC
Q 019519          179 VRAKTFYAGKANVNVAEVNVPVVGGHAG  206 (340)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~  206 (340)
                      .++...+|+.++   .+.+..++--|+.
T Consensus       137 ~~l~~~aa~~~~---~~~dieiiE~Hh~  161 (273)
T 1dih_A          137 LKLLEKAAKVMG---DYTDIEIIEAHHR  161 (273)
T ss_dssp             HHHHHHHHHHHT---TTSEEEEEEEECT
T ss_pred             HHHHHHHHHhcC---CCCCEEEEEeecC
Confidence            356677888886   4667788888987

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.62  E-value=0.014  Score=53.03  Aligned_cols=117  Identities=13%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-------   94 (340)
                      .+.+.|+||+|.+|.+++..|+..|.  +|++.|.++  ......++..... ..+.... +-+|.   ++.+       
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  109 (281)
T 4dry_A           33 GRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAEF  109 (281)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45889999999999999999999987  899999876  2233333332111 1112111 11222   1222       


Q ss_pred             CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHH----HHHHHHHHHHhC-CCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGI----VKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i----~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                      ...|++|+.||.....    ..+.   ...+..|+.-    .+.+.+.+.+.. ..+.||++|.-
T Consensus       110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~  174 (281)
T 4dry_A          110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSI  174 (281)
T ss_dssp             SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            3679999999974321    1222   2344555544    555666666554 25778877653

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.59  E-value=0.0013  Score=58.68  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc------CC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ED   96 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------~~   96 (340)
                      +.+.+.|+||+|.+|..++..|+..+.  +|++.|.+. .....++.     .++.... +-+|   ..+++      ..
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~-~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~g~   79 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRG-EDVVADLG-----DRARFAAADVTDEAAVASALDLAETMGT   79 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC-HHHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCch-HHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            456899999999999999999999887  899999854 22222221     1222221 1122   12222      38


Q ss_pred             CCEEEEcCCCCCC------C-CCC---HHHHHHHHHHHHHHHHHHHHHh-----------CCCcEEEEecCCCC
Q 019519           97 SDVVIIPAGVPRK------P-GMT---RDDLFNINAGIVKDLCSAIAKY-----------CPNAIVNMISNPVN  149 (340)
Q Consensus        97 aDiVi~~ag~~~~------~-g~~---r~~~~~~N~~i~~~i~~~i~~~-----------~p~a~viv~tNP~d  149 (340)
                      .|++|+.||....      . ..+   ....+..|+.-...+.+.+..+           ...+.||++|....
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tl3_A           80 LRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA  153 (257)
T ss_dssp             EEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC-
T ss_pred             CCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhh
Confidence            8999999986321      0 122   2344566766555555444432           33567887776554

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.59  E-value=0.004  Score=56.19  Aligned_cols=111  Identities=19%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|.++.  .....++..      +.... +-+|   .++++       
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998752  222222211      22111 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  146 (340)
                      ...|++|+.||.....    ..+.   ...+..|+.-...+.+.+..+-  ..+.||++|.
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  141 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISS  141 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            3789999999864321    1222   3345566655555444443211  1466776664

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.54  E-value=0.0077  Score=56.61  Aligned_cols=63  Identities=22%  Similarity=0.323  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ....++|+|||. |.+|+.++..+...+.  +|..+|......        .   ....   ..++++.+++||+|++..
T Consensus       168 ~l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~--------~---~~~~---~~sl~ell~~aDvVil~v  230 (340)
T 4dgs_A          168 SPKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG--------V---DWIA---HQSPVDLARDSDVLAVCV  230 (340)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT--------S---CCEE---CSSHHHHHHTCSEEEECC
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc--------c---Ccee---cCCHHHHHhcCCEEEEeC
Confidence            345689999998 9999999999987776  899999865220        0   1111   145678899999999974

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.54  E-value=0.0035  Score=56.13  Aligned_cols=115  Identities=12%  Similarity=0.077  Sum_probs=70.6

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        28 ~~KI~IiGaa--G~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      .+++.|+||+  |.+|.+++..|+..+.  +|++.|.++. .....++......  +.... +-+|   .+++++     
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGG--ALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--cEEEECCCCCHHHHHHHHHHHHHH
Confidence            4589999998  8999999999998887  8999998752 2222333221111  11111 1122   222233     


Q ss_pred             --CCCEEEEcCCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519           96 --DSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus        96 --~aDiVi~~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                        ..|++|+.||....     +  ..+   ....+..|+.....+.+.+.++- +.+.||++|.
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence              67999999997532     1  222   23456678877777777766542 2367777764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.52  E-value=0.047  Score=49.08  Aligned_cols=122  Identities=17%  Similarity=0.136  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---------HHHHHHHhcCCCCceEEEEe-cCCcc---ccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GNDQL---GQA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a   93 (340)
                      +.+++.|+||+|.+|..++..|+..+.  +|++.|.+..         .....++....  .++.... +-+|.   ++.
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~   80 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRAA   80 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHH
Confidence            346899999999999999999999987  8999998751         12222332211  2333222 11221   122


Q ss_pred             -------cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccH
Q 019519           94 -------LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTV  152 (340)
Q Consensus        94 -------l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~d~~t  152 (340)
                             +...|++|+.||.....   ..+.   ...+..|+.-...+.+.+..+   ...+.||+++.......
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~  155 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNP  155 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCH
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCC
Confidence                   23789999999975322   1222   234456666555555544332   24577888877665443

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.45  E-value=0.028  Score=50.26  Aligned_cols=107  Identities=18%  Similarity=0.219  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------CC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~   96 (340)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|.+....     ..    ..+.... +-+|   .++.+       ..
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   96 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPS-----AD----PDIHTVAGDISKPETADRIVREGIERFGR   96 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCC-----SS----TTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhc-----cc----CceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence            45899999999999999999999987  899999875210     00    0122211 1112   12222       37


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 019519           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  146 (340)
                      .|++|+.||.....   ..+.   ...+..|+.-...+.+.    +.+. ..+.+++++.
T Consensus        97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  155 (260)
T 3un1_A           97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITT  155 (260)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEec
Confidence            99999999975322   1222   33455666555544444    4443 3566666654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.44  E-value=0.038  Score=49.39  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-----cHHHHHHHhcCCCCceEEEEe-cCCc---ccccc----
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (340)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|...     .+....++....  .++.... +-+|   .++.+    
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            45899999999999999999999887  899987643     122233444332  2333332 1122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC
Q 019519           95 ---EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (340)
Q Consensus        95 ---~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~  164 (340)
                         ...|++|+.||.....   ..+.   ...+..|+.....+.+.+..+- +.+.|++++....         ...   
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~---------~~~---  154 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLL---------AAY---  154 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHH---------HHH---
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhh---------ccC---
Confidence               3689999999965322   1222   3445678877777777776542 3567777765431         111   


Q ss_pred             CCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       165 ~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .+..-.++.+......+-+.++..++  +..|++-.+
T Consensus       155 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  189 (262)
T 3ksu_A          155 TGFYSTYAGNKAPVEHYTRAASKELM--KQQISVNAI  189 (262)
T ss_dssp             HCCCCC-----CHHHHHHHHHHHHTT--TTTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            23334566654334456777888874  445655444

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.42  E-value=0.0058  Score=53.41  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccC------CCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALE------DSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~------~aDiVi  101 (340)
                      ++|.|+||+|.+|++++..|+..+.  +|+++|.++.      +.+.   ..+.... ...++.++++      ..|++|
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~------~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~d~li   71 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE------GEDL---IYVEGDVTREEDVRRAVARAQEEAPLFAVV   71 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC------SSSS---EEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc------ccce---EEEeCCCCCHHHHHHHHHHHHhhCCceEEE
Confidence            5899999999999999999998887  8999998652      0110   0011100 0012223333      789999


Q ss_pred             EcCCCCCCCC------C----CHHHHHHHHHHHHHHHHHHHHHhC---------CCcEEEEecCC
Q 019519          102 IPAGVPRKPG------M----TRDDLFNINAGIVKDLCSAIAKYC---------PNAIVNMISNP  147 (340)
Q Consensus       102 ~~ag~~~~~g------~----~r~~~~~~N~~i~~~i~~~i~~~~---------p~a~viv~tNP  147 (340)
                      +.+|......      .    .....+..|+.....+.+.+.++.         +.+.+|++|..
T Consensus        72 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~  136 (242)
T 1uay_A           72 SAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASV  136 (242)
T ss_dssp             ECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCT
T ss_pred             EcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCCh
Confidence            9998643221      1    223455667766666666555432         12377766543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.41  E-value=0.0037  Score=58.67  Aligned_cols=62  Identities=18%  Similarity=0.382  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|||. |.+|+.++..+...+.  +|..+|.+....     .  .    +...   .++++.+++||+|+++.
T Consensus       162 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~-----~--g----~~~~---~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          162 FSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPN-----T--N----YTYY---GSVVELASNSDILVVAC  223 (333)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTT-----C--C----SEEE---SCHHHHHHTCSEEEECS
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhc-----c--C----ceec---CCHHHHHhcCCEEEEec
Confidence            35579999998 9999999999987776  899999875211     0  1    1112   35678889999999985

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.41  E-value=0.013  Score=52.78  Aligned_cols=109  Identities=12%  Similarity=0.134  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cccc-------cCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-------LED   96 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-------l~~   96 (340)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|.++...     .. . ...+..  +-+|   ..+.       +..
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~-~-~~~~~~--Dv~~~~~v~~~~~~~~~~~g~   81 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSD-----VN-V-SDHFKI--DVTNEEEVKEAVEKTTKKYGR   81 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--C-----TT-S-SEEEEC--CTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhc-----cC-c-eeEEEe--cCCCHHHHHHHHHHHHHHcCC
Confidence            346899999999999999999999987  899999876211     00 0 001111  1112   1122       237


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      .|++|+.||.....   ..+.   ...+..|+.-.    +.+.+.+.+. ..+.||++|..
T Consensus        82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  141 (269)
T 3vtz_A           82 IDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI-GHGSIINIASV  141 (269)
T ss_dssp             CCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECch
Confidence            89999999975322   1222   23445565544    4444444443 35677777654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.41  E-value=0.0082  Score=54.07  Aligned_cols=115  Identities=13%  Similarity=0.089  Sum_probs=71.2

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcC-CCCceEEEEecCCc---ccccc------
Q 019519           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVAGYMGNDQ---LGQAL------   94 (340)
Q Consensus        28 ~~KI~IiGaa--G~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~-~~~~~v~~~~~~~d---~~~al------   94 (340)
                      .+++.|+||+  |.+|..++..|+..|.  +|+++|.++. .....++... ....-+..  +-+|   ..+++      
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~--D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYEL--DVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC--CTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEc--CCCCHHHHHHHHHHHHHH
Confidence            4589999998  8999999999999887  8999998762 2222333221 10011111  1122   12222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519           95 -EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                       ...|++|+.||....     +  ..+   ....+..|+.....+.+.+..+- +.+.||++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence             267999999987532     1  222   23456778888877777776552 2367777765

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.40  E-value=0.0077  Score=53.65  Aligned_cols=119  Identities=15%  Similarity=0.081  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHh---CCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---cccc----
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL----   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~---~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al----   94 (340)
                      .+++.|+||+|.+|..++..|+.   .+.  +|++.|.++  ......++.......++.... +-+|.   ++.+    
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998   676  899999875  222233343211012333322 11221   1111    


Q ss_pred             -----CCCC--EEEEcCCCCCCC-----C-CC---HHHHHHHHHHHHHHHHHHHHHhC-----CCcEEEEecCCC
Q 019519           95 -----EDSD--VVIIPAGVPRKP-----G-MT---RDDLFNINAGIVKDLCSAIAKYC-----PNAIVNMISNPV  148 (340)
Q Consensus        95 -----~~aD--iVi~~ag~~~~~-----g-~~---r~~~~~~N~~i~~~i~~~i~~~~-----p~a~viv~tNP~  148 (340)
                           ...|  ++|+.||.....     . .+   ....+..|+.-...+.+.+..+-     ..+.||++|.-.
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~  158 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLC  158 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGG
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCch
Confidence                 1347  999999874321     1 23   23456677777777777665543     236677776543

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.39  E-value=0.016  Score=51.38  Aligned_cols=108  Identities=21%  Similarity=0.267  Sum_probs=63.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---ccccc-------CCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQAL-------EDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~al-------~~a   97 (340)
                      .+++.|+||+|.+|..++..|+..+.  +|++.|.+...      ....  ..... .+-+|   +++++       ...
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~~--~~~~~-~D~~d~~~~~~~~~~~~~~~g~i   75 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQYP--FATEV-MDVADAAQVAQVCQRLLAETERL   75 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCCS--SEEEE-CCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcCC--ceEEE-cCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999987  89999987521      1111  11110 11112   22223       378


Q ss_pred             CEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 019519           98 DVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        98 DiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP  147 (340)
                      |++|+.||.....   ..+.   ...+..|+.-...+    .+.+++.. .+.||++|..
T Consensus        76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  134 (250)
T 2fwm_X           76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVASD  134 (250)
T ss_dssp             CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECch
Confidence            9999999874321   1222   23445565544444    44445443 4566666643

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.38  E-value=0.0051  Score=57.63  Aligned_cols=67  Identities=24%  Similarity=0.377  Sum_probs=49.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ....++|+|||. |.+|+.++..+...+.  +|..+|.+.......++.       +..    .++.+.+++||+|+++.
T Consensus       147 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~----~~l~~~l~~aDvVil~v  212 (334)
T 2dbq_A          147 DVYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVERELN-------AEF----KPLEDLLRESDFVVLAV  212 (334)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHC-------CEE----CCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhcC-------ccc----CCHHHHHhhCCEEEECC
Confidence            345679999998 9999999999988776  899999876432222221       121    24667889999999986


Q ss_pred             C
Q 019519          105 G  105 (340)
Q Consensus       105 g  105 (340)
                      .
T Consensus       213 p  213 (334)
T 2dbq_A          213 P  213 (334)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.38  E-value=0.00056  Score=59.50  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ..|||+|||+ |.+|+.++..|...+.  +|.++|.++.   ...+...    .+..    .+..++++++|+||++.
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~~~----~~~~~~~~~aDvVilav   81 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GAEV----LCYSEAASRSDVIVLAV   81 (201)
Confidence            4579999998 9999999999887776  8899987642   1112111    1221    13457789999999985

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.37  E-value=0.012  Score=53.60  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEe-CCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D-~~~   64 (340)
                      .+++.|+||+|.+|..++..|+..+.  +|++.| .+.
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            45899999999999999999999987  899999 765

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.35  E-value=0.055  Score=48.90  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            446899999999999999999998887  899999876

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.34  E-value=0.026  Score=50.72  Aligned_cols=121  Identities=18%  Similarity=0.267  Sum_probs=75.2

Q ss_pred             CCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc------
Q 019519           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL------   90 (340)
Q Consensus        20 ~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~------   90 (340)
                      +|+|++  .+.+.|+||++-+|..++..|+..|.  .|+++|+++  .+..+.++.....  ++.... +-+|.      
T Consensus         1 Sy~sL~--gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~   74 (254)
T 4fn4_A            1 SYQSLK--NKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEF   74 (254)
T ss_dssp             CCGGGT--TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHH
T ss_pred             CCCCCC--CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHH
Confidence            355544  45788889989999999999999987  899999986  3444555554332  222221 11221      


Q ss_pred             ----ccccCCCCEEEEcCCCCC--CC--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           91 ----GQALEDSDVVIIPAGVPR--KP--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        91 ----~~al~~aDiVi~~ag~~~--~~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                          .+.+-.-|++|..||...  .+  ..+..   ..+..|+    -..+..++.|.+.. .+.||+++.-
T Consensus        75 ~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~  145 (254)
T 4fn4_A           75 VRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASI  145 (254)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             HHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEech
Confidence                123457899999998632  22  23322   2344454    45566777776654 5778877643

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.28  E-value=0.0026  Score=56.57  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccc-------cCCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQA-------LEDSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~a-------l~~aD   98 (340)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.|.++....  ++.      .+.... ...+.+++       +...|
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~------~~~~D~~~~~~~~~~~~~~~~~~g~id   83 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPK--GLF------GVEVDVTDSDAVDRAFTAVEEHQGPVE   83 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCT--TSE------EEECCTTCHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHH--Hhc------CeeccCCCHHHHHHHHHHHHHHcCCCC
Confidence            346899999999999999999999887  8999998652100  000      011100 00111122       23679


Q ss_pred             EEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 019519           99 VVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (340)
Q Consensus        99 iVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP~  148 (340)
                      ++|+.||.....   ..+   ....+..|+.-...+.+.+..+   ...+.||++|...
T Consensus        84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  142 (247)
T 1uzm_A           84 VLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVS  142 (247)
T ss_dssp             EEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHh
Confidence            999999875321   222   2334556665554444444322   2356777777654

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.27  E-value=0.021  Score=53.05  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEe-CCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D-~~~   64 (340)
                      .+++.|+||+|.+|..++..|+..|.  +|++.| .++
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            35789999999999999999999987  899999 764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.25  E-value=0.0078  Score=54.87  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcC-CCCceEEEE-ecCCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHI-NTRSEVAGY-MGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~-~~~~~v~~~-~~~~d~~~al~~aDiVi~~  103 (340)
                      .+++.|+||+|.+|..++..|+..+.  +|+++|.+.  .+..+.++... ... -+... +...++.++++++|+||.+
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVN-VTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCC-CEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcE-EEEecCCCHHHHHHHHHhCCEEEEC
Confidence            45899999779999999999999886  799999875  22233333221 111 11111 1112345667889999999


Q ss_pred             CCCC
Q 019519          104 AGVP  107 (340)
Q Consensus       104 ag~~  107 (340)
                      +|..
T Consensus       196 ag~g  199 (287)
T 1lu9_A          196 GAIG  199 (287)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            8753

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.23  E-value=0.0013  Score=59.95  Aligned_cols=152  Identities=17%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEE-EEeCCCcHHHHHHHhcCC-CCceEEEEecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~-L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      |+|+||+|+||+|.+|+.++..+...+-. ||+ .+|.+.....-.|+.... ....+..   ++|+++.++++|+||..
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~v---~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVAL---TDDIERVCAEADYLIDF   80 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCBC---BCCHHHHHHHCSEEEEC
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCcee---cCCHHHHhcCCCEEEEc
Confidence            56899999997799999999888776533 444 468653211111222211 1112222   35777888899999986


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEecc-chhH---H
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDV---V  179 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~-~ld~---~  179 (340)
                      . .               -....+.++.+.+.+.+  +++-|-.-+  ..-..++.+.+...+  -+++-. .+..   .
T Consensus        81 T-~---------------p~a~~~~~~~al~~G~~--vVigTTG~s--~~~~~~L~~aa~~~~--vv~a~N~s~Gv~l~~  138 (272)
T 4f3y_A           81 T-L---------------PEGTLVHLDAALRHDVK--LVIGTTGFS--EPQKAQLRAAGEKIA--LVFSANMSVGVNVTM  138 (272)
T ss_dssp             S-C---------------HHHHHHHHHHHHHHTCE--EEECCCCCC--HHHHHHHHHHTTTSE--EEECSCCCHHHHHHH
T ss_pred             C-C---------------HHHHHHHHHHHHHcCCC--EEEECCCCC--HHHHHHHHHHhccCC--EEEECCCCHHHHHHH
Confidence            4 1               12233444444555433  222232221  111222233332111  233331 2222   3


Q ss_pred             HHHHHHHHHcCCCCCCCceeEEEecCC
Q 019519          180 RAKTFYAGKANVNVAEVNVPVVGGHAG  206 (340)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~hg~  206 (340)
                      +|...+|+.|+   .+.++.++--|+.
T Consensus       139 ~~~~~aa~~l~---~~~diei~E~HH~  162 (272)
T 4f3y_A          139 KLLEFAAKQFA---QGYDIEIIEAHHR  162 (272)
T ss_dssp             HHHHHHHHHTS---SSCEEEEEEEECT
T ss_pred             HHHHHHHHhcC---cCCCEEEEEecCC
Confidence            56677788875   4677788888887

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.22  E-value=0.015  Score=57.86  Aligned_cols=136  Identities=15%  Similarity=0.183  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCChHHH-HHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~-~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+.+||.+||. |-.|.+ +|..|...|+  +|...|..........|.....  .+.  .+ .+.+....++|+||...
T Consensus        17 ~~~~~i~~iGi-Gg~Gms~lA~~l~~~G~--~V~~sD~~~~~~~~~~L~~~gi--~~~--~G-~~~~~~~~~~d~vV~Sp   88 (524)
T 3hn7_A           17 FQGMHIHILGI-CGTFMGSLALLARALGH--TVTGSDANIYPPMSTQLEQAGV--TIE--EG-YLIAHLQPAPDLVVVGN   88 (524)
T ss_dssp             --CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEEESCCCTTHHHHHHHTTC--EEE--ES-CCGGGGCSCCSEEEECT
T ss_pred             ecCCEEEEEEe-cHhhHHHHHHHHHhCCC--EEEEECCCCCcHHHHHHHHCCC--EEE--CC-CCHHHcCCCCCEEEECC
Confidence            45679999998 888875 6888888888  9999998752222233444332  333  23 23333336899999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCCCceEe
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d--~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      |+|...-+ ......++++++.+. +.+.++ .++..+|-+|-..+  +.|.+++.+++.+| +++.-++|
T Consensus        89 gi~~~~p~-l~~a~~~gi~v~~~~-e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G-~~~~~~iG  156 (524)
T 3hn7_A           89 AMKRGMDV-IEYMLDTGLRYTSGP-QFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG-IDAGFLIG  156 (524)
T ss_dssp             TCCTTSHH-HHHHHHHTCCEEEHH-HHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT-CCCEEECS
T ss_pred             CcCCCCHH-HHHHHHCCCcEEEHH-HHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC-CCceEEEC
Confidence            88743221 112223455555543 232332 34456677776666  67777788888888 65544454

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.17  E-value=0.0085  Score=53.80  Aligned_cols=116  Identities=13%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---cccccC-----
Q 019519           27 PDRKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (340)
Q Consensus        27 ~~~KI~IiGa--aG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (340)
                      +.+++.|+||  +|.+|..++..|+..+.  +|++.|.++... ..++.+.. ..++.... +-+|   .++.++     
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEA   81 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHH
Confidence            3458999998  79999999999999987  899999876221 11222111 01111111 1122   222232     


Q ss_pred             -----CCCEEEEcCCCCCC------C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519           96 -----DSDVVIIPAGVPRK------P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus        96 -----~aDiVi~~ag~~~~------~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                           ..|++|+.||....      +  ..+.   ...+..|+.....+++.+..+- +.+.||+++.
T Consensus        82 ~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss  149 (269)
T 2h7i_A           82 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDF  149 (269)
T ss_dssp             HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             hCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcC
Confidence                 78999999986531      1  2232   3345678877777777776543 2466776653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.17  E-value=0.071  Score=46.83  Aligned_cols=111  Identities=17%  Similarity=0.179  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-Cc---------cccccCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---------LGQALEDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d---------~~~al~~a   97 (340)
                      .+++.|+||+|.+|.+++..|+. +.  .++++|.++...  .++.+..   .+...... .|         ..+.+...
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~--~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            5 KKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHL--AALAEIE---GVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHH--HHHHTST---TEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHhhc---CCcceecccchHHHHHHHHHHHHhcCCC
Confidence            45899999999999999999876 54  799999765211  1222211   12211100 01         11223478


Q ss_pred             CEEEEcCCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        98 DiVi~~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      |++|+.||......   .+   -...+..|+..    .+.+.+.+++..  +.+|+++...
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~  135 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGA  135 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC---
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcc
Confidence            99999998753221   11   12334455544    555555555543  6677666543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.17  E-value=0.12  Score=46.07  Aligned_cols=116  Identities=15%  Similarity=0.215  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCc---ccccc--CCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--EDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--~~aDiVi  101 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|.+..+.....+.....  +..... +-+|   .++.+  -.-|++|
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            34677889989999999999999997  8999998864333333433321  222211 1122   11112  3479999


Q ss_pred             EcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519          102 IPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       102 ~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ..||.....   ..+.   ...+.-|+.    ..+..++.+.+....+.||+++.-
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~  140 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASL  140 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEech
Confidence            999875422   2232   233445554    455666667666667888888653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.15  E-value=0.049  Score=44.14  Aligned_cols=85  Identities=13%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             CCCCeEEEEcCC---CChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEE
Q 019519           26 VPDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaa---G~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      .++.+|+|||++   |.+|..++..|...++  +  ++++++...   .+   .   -+..+   .++.+..+++|++++
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~--V~~vnp~~~---~i---~---G~~~~---~s~~el~~~vDlvii   75 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGF--E--VLPVNPNYD---EI---E---GLKCY---RSVRELPKDVDVIVF   75 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTCS---EE---T---TEECB---SSGGGSCTTCCEEEE
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCC--E--EEEeCCCCC---eE---C---Ceeec---CCHHHhCCCCCEEEE
Confidence            456799999965   8999999999988888  6  455444210   01   0   12222   345555678999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~vi  142 (340)
                      +.  |              .+...++++.+.+.+..++++
T Consensus        76 ~v--p--------------~~~v~~v~~~~~~~g~~~i~~   99 (138)
T 1y81_A           76 VV--P--------------PKVGLQVAKEAVEAGFKKLWF   99 (138)
T ss_dssp             CS--C--------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             Ee--C--------------HHHHHHHHHHHHHcCCCEEEE
Confidence            84  1              244555555555556666444

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.14  E-value=0.026  Score=49.81  Aligned_cols=118  Identities=17%  Similarity=0.140  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCcc---ccccC----
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL---GQALE----   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al~----   95 (340)
                      +.+++.|+||+|.+|.+++..|+..+.  .+++.+.+.   ......++....  .++.... +-+|.   ++.++    
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   81 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDN   81 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  787765443   233333444322  2333221 11121   11111    


Q ss_pred             ---------CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519           96 ---------DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus        96 ---------~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                               ..|++|+.||.....   ..+.   ...+..|+.....+.+.+..+- +.+.||++|...
T Consensus        82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~  150 (255)
T 3icc_A           82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA  150 (255)
T ss_dssp             HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred             HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence                     289999999874321   1222   3345677777777777665442 356777776543

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.01  Score=52.90  Aligned_cols=113  Identities=17%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---ccccc-------C
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~   95 (340)
                      +++.|+||+|.+|.+++..|+..+....|++.+.++.  .....++.     .++.... +-+|   .++.+       .
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4788999999999999999987753337888887652  22222221     1222221 1122   11222       3


Q ss_pred             CCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRK--P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ..|++|+.||....  +  ..+.   ...+..|+.-    .+.+.+.+++..  +.||++|...
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~  139 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDA  139 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSC
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCch
Confidence            78999999997322  2  2232   2344555544    444444445543  6777776654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.10  E-value=0.018  Score=55.75  Aligned_cols=91  Identities=15%  Similarity=0.150  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH-HHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ..+|+|+|. |.+|..++..|...|.  +|..+|+++... .+.+.   .    ...    .++++++++||+|+.+.+.
T Consensus       211 GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~~---G----~~~----~sL~eal~~ADVVilt~gt  276 (436)
T 3h9u_A          211 GKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAAME---G----YQV----LLVEDVVEEAHIFVTTTGN  276 (436)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---T----CEE----CCHHHHTTTCSEEEECSSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHHHh---C----Cee----cCHHHHHhhCCEEEECCCC
Confidence            469999998 9999999999988776  899999875222 12111   1    111    2567899999999987643


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      ..--+.                 +.++...|++++++++++..
T Consensus       277 ~~iI~~-----------------e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          277 DDIITS-----------------EHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             SCSBCT-----------------TTGGGCCTTEEEEECSSSGG
T ss_pred             cCccCH-----------------HHHhhcCCCcEEEEeCCCCC
Confidence            211111                 12333458899999998753

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.08  E-value=0.0051  Score=57.24  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=63.6

Q ss_pred             cccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCC
Q 019519           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        17 ~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~   96 (340)
                      .|.+........++|+|||. |.+|+.++..+...|.  +|..+|......     .      .+.......++++.+++
T Consensus       128 ~W~~~~~~~l~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~------~~~~~~~~~~l~ell~~  193 (315)
T 3pp8_A          128 LWKPLPEYTREEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSW-----P------GVESYVGREELRAFLNQ  193 (315)
T ss_dssp             CCCCCCCCCSTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCC-----T------TCEEEESHHHHHHHHHT
T ss_pred             ccCCCCCCCcCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhh-----h------hhhhhcccCCHHHHHhh
Confidence            34443333345679999998 9999999999987776  899999764210     0      11111112467788999


Q ss_pred             CCEEEEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           97 SDVVIIPAGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        97 aDiVi~~ag~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      ||+|++..-. +...+.     +  |       .+.+....|++++|+++--
T Consensus       194 aDiV~l~~Plt~~t~~l-----i--~-------~~~l~~mk~gailIN~aRG  231 (315)
T 3pp8_A          194 TRVLINLLPNTAQTVGI-----I--N-------SELLDQLPDGAYVLNLARG  231 (315)
T ss_dssp             CSEEEECCCCCGGGTTC-----B--S-------HHHHTTSCTTEEEEECSCG
T ss_pred             CCEEEEecCCchhhhhh-----c--c-------HHHHhhCCCCCEEEECCCC
Confidence            9999997421 111111     0  1       1223334578999988643

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.06  E-value=0.0029  Score=60.84  Aligned_cols=77  Identities=23%  Similarity=0.248  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCc-ceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-c---CCccccccCC--CC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIAN--TPGVAADVGHINTRSEVAGYM-G---NDQLGQALED--SD   98 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~-~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~--aD   98 (340)
                      |+||+|+|| |.+|+.++..|+..+.+ .+|++.|.+.  .+..+.++.... ..++.... +   ..++.+.+++  +|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            469999998 99999999999887743 6899999876  233333443211 01122111 1   1234556666  89


Q ss_pred             EEEEcCCC
Q 019519           99 VVIIPAGV  106 (340)
Q Consensus        99 iVi~~ag~  106 (340)
                      +||.+++.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999863

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.05  E-value=0.0073  Score=57.02  Aligned_cols=94  Identities=23%  Similarity=0.341  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|||. |.+|+.++..+...+.  +|..+|... ....+.++.       +...   .++++.+++||+|+++.
T Consensus       162 l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~~---~~l~ell~~aDvV~l~~  228 (351)
T 3jtm_A          162 LEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKFV---EDLNEMLPKCDVIVINM  228 (351)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEEC---SCHHHHGGGCSEEEECS
T ss_pred             ccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeEc---CCHHHHHhcCCEEEECC
Confidence            35679999998 9999999999987776  899999875 232222221       1211   35678899999999985


Q ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          105 GV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       105 g~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      -. +...+.-       |    .   +.+....|++++|+++.
T Consensus       229 Plt~~t~~li-------~----~---~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          229 PLTEKTRGMF-------N----K---ELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             CCCTTTTTCB-------S----H---HHHHHSCTTEEEEECSC
T ss_pred             CCCHHHHHhh-------c----H---HHHhcCCCCCEEEECcC
Confidence            32 2111221       1    1   12333457899998864

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.05  E-value=0.01  Score=55.84  Aligned_cols=66  Identities=21%  Similarity=0.294  Sum_probs=47.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHH-hCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~-~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ...++|+|||. |.+|+.++..+. ..+.  +|..+|.+. ......++.       +...   +++++.+++||+|+++
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~~---~~l~ell~~aDvVil~  227 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------AERV---DSLEELARRSDCVSVS  227 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------CEEC---SSHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------cEEe---CCHHHHhccCCEEEEe
Confidence            34579999998 999999999998 7776  899999876 222222221       1221   3566778999999998


Q ss_pred             C
Q 019519          104 A  104 (340)
Q Consensus       104 a  104 (340)
                      .
T Consensus       228 v  228 (348)
T 2w2k_A          228 V  228 (348)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.05  E-value=0.018  Score=56.07  Aligned_cols=74  Identities=14%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCC---ccccccCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQALEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~~aDiVi  101 (340)
                      |++++|.|+|+ |++|++++..|...+.  +|+++|.+..  .+.++.....  .+.... +.+   ++.++++++|+||
T Consensus         1 M~~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~--~a~~la~~~~--~~~~~~~Dv~d~~~l~~~l~~~DvVI   73 (450)
T 1ff9_A            1 MATKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQ--HSTPISLDVNDDAALDAEVAKHDLVI   73 (450)
T ss_dssp             -CCCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHH--HHHHTTTTCT--TEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHH--HHHHHHHhcC--CceEEEeecCCHHHHHHHHcCCcEEE
Confidence            34579999996 9999999999998775  8999998642  2223332111  122111 112   3446678999999


Q ss_pred             EcCCC
Q 019519          102 IPAGV  106 (340)
Q Consensus       102 ~~ag~  106 (340)
                      ++++.
T Consensus        74 n~a~~   78 (450)
T 1ff9_A           74 SLIPY   78 (450)
T ss_dssp             ECCC-
T ss_pred             ECCcc
Confidence            99864

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.01  E-value=0.068  Score=49.36  Aligned_cols=153  Identities=16%  Similarity=0.224  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC---------C--cHHHHHHHhcCCCCceEEEEecCCccc---c-
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA---------N--TPGVAADVGHINTRSEVAGYMGNDQLG---Q-   92 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~---------~--~~~~~~dl~~~~~~~~v~~~~~~~d~~---~-   92 (340)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|..         .  ......++....  ......  -+|..   + 
T Consensus         9 gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~~~~~D--~~~~~~~~~~   82 (319)
T 1gz6_A            9 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVAN--YDSVEAGEKL   82 (319)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEE--CCCGGGHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhC--CeEEEe--CCCHHHHHHH
Confidence            46899999999999999999999987  89998863         2  122233443222  122221  12221   1 


Q ss_pred             ------ccCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 019519           93 ------ALEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (340)
Q Consensus        93 ------al~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~  156 (340)
                            .+...|++|+.||.....   ..+.   ...+..|....    +.+.+.+++. ..+.||++|....       
T Consensus        83 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~grIV~vsS~~~-------  154 (319)
T 1gz6_A           83 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTASASG-------  154 (319)
T ss_dssp             HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-------
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhh-------
Confidence                  134789999999975432   2232   23455666554    4444444544 3466776664221       


Q ss_pred             HHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       157 ~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                          ..| .+....++.+......+-+.+++.+.  +..|++..+
T Consensus       155 ----~~~-~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~vn~v  192 (319)
T 1gz6_A          155 ----IYG-NFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTI  192 (319)
T ss_dssp             ----HHC-CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             ----ccC-CCCCHHHHHHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence                112 23223334433333345566666653  345555444

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.98  E-value=0.0082  Score=55.58  Aligned_cols=69  Identities=14%  Similarity=0.214  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .++|+|||+ |.+|..++..|... + +.+|.++|.++....  ++...... .+...   +++++++++||+|+++.
T Consensus       135 ~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~~--~l~~~~~~-~~~~~---~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          135 SEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKENAE--KFADTVQG-EVRVC---SSVQEAVAGADVIITVT  204 (312)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHHHH--HHHHHSSS-CCEEC---SSHHHHHTTCSEEEECC
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHHHH--HHHHHhhC-CeEEe---CCHHHHHhcCCEEEEEe
Confidence            469999998 99999999888764 4 458999998752221  22211100 23322   46678899999999874

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.94  E-value=0.024  Score=55.79  Aligned_cols=115  Identities=15%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-----HHHHHHHhcCCCCceEEEEe-cCCc---cccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYM-GNDQ---LGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~~a   97 (340)
                      +..+|.|+||+|.+|..++..|+..+. ..|++++.+..     .....++....  .++.... +-+|   +.+.++.+
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHHHH
Confidence            346999999999999999999988775 35999998641     22233444322  2344332 1122   23344444


Q ss_pred             ------CEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           98 ------DVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        98 ------DiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                            |.||++||.....   ..+.   ...+..|+.....+.+.+.+. +...||++|
T Consensus       302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~S  360 (486)
T 2fr1_A          302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  360 (486)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEc
Confidence                  9999999975432   2232   234556888888888887755 334555555

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.93  E-value=0.008  Score=56.16  Aligned_cols=66  Identities=21%  Similarity=0.305  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|||. |.+|+.++..+...+.  +|..+|.+.. ....   ....    +..    .++++.+++||+|+++.
T Consensus       153 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~---~~~g----~~~----~~l~e~l~~aDvVi~~v  218 (330)
T 2gcg_A          153 LTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEEA---AEFQ----AEF----VSTPELAAQSDFIVVAC  218 (330)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHHH---HTTT----CEE----CCHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhHH---HhcC----cee----CCHHHHHhhCCEEEEeC
Confidence            45679999998 9999999999987776  8999998652 2111   1111    222    14567789999999986


Q ss_pred             C
Q 019519          105 G  105 (340)
Q Consensus       105 g  105 (340)
                      .
T Consensus       219 p  219 (330)
T 2gcg_A          219 S  219 (330)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.93  E-value=0.077  Score=47.62  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---c-------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  ....+.++.....  +..... +-+|   .       .+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            45778889999999999999999997  899999986  2333445543321  222211 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      -.-|++|..||.....   ..+.   ...+..|+.    ..+..++.+.+....+.||+++.-.
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~  148 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT  148 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence            5789999999875322   2232   233444544    5566677776666678888887543

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.93  E-value=0.018  Score=54.29  Aligned_cols=71  Identities=18%  Similarity=0.297  Sum_probs=48.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+|+|||+ |.+|...+..+.....+.+|.++|.+.  ++..+.++.... ...+...   +++++++++||+||++-
T Consensus       130 ~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~-g~~~~~~---~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          130 RKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYS-GLTIRRA---SSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCT-TCEEEEC---SSHHHHHTTCSEEEECC
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcc-CceEEEe---CCHHHHHhcCCEEEEec
Confidence            59999998 999999887665433356999999875  233343443211 1133332   46778899999999974

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.92  E-value=0.011  Score=54.62  Aligned_cols=66  Identities=27%  Similarity=0.362  Sum_probs=48.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ....++|+|||. |.+|+.++..+...+.  +|..+|.+.....+.++   .    +..    .++++.+++||+|++..
T Consensus       139 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          139 ELEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIHV  204 (307)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEECC
T ss_pred             ccCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEec
Confidence            345679999998 9999999999987776  89999987643222221   1    121    14567889999999985

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.89  E-value=0.0084  Score=52.69  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=57.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cccc-cCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-LEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-l~~aDiVi~~a  104 (340)
                      ++|.|+|+ |.+|+.++..|...+.   ++++|.++....  .+. ... .-+.+  +.+|   ++++ +++||.||++.
T Consensus        10 ~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~~--~~~-~~~-~~i~g--d~~~~~~l~~a~i~~ad~vi~~~   79 (234)
T 2aef_A           10 RHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRKK--VLR-SGA-NFVHG--DPTRVSDLEKANVRGARAVIVDL   79 (234)
T ss_dssp             CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHHH--HHH-TTC-EEEES--CTTCHHHHHHTTCTTCSEEEECC
T ss_pred             CEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHHH--HHh-cCC-eEEEc--CCCCHHHHHhcCcchhcEEEEcC
Confidence            59999998 9999999998876653   889997753222  222 111 11221  1122   2233 78999999975


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEecCCCC
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA-IVNMISNPVN  149 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~viv~tNP~d  149 (340)
                      +..           ..|..    ++..+++.+|+. ++.-+.||..
T Consensus        80 ~~d-----------~~n~~----~~~~a~~~~~~~~iia~~~~~~~  110 (234)
T 2aef_A           80 ESD-----------SETIH----CILGIRKIDESVRIIAEAERYEN  110 (234)
T ss_dssp             SCH-----------HHHHH----HHHHHHHHCSSSEEEEECSSGGG
T ss_pred             CCc-----------HHHHH----HHHHHHHHCCCCeEEEEECCHhH
Confidence            321           23433    444556678874 4444566654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.88  E-value=0.015  Score=52.03  Aligned_cols=75  Identities=19%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-------------------cHHH--HHHHhcCCCCceEEEEec
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------------------TPGV--AADVGHINTRSEVAGYMG   86 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-------------------~~~~--~~dl~~~~~~~~v~~~~~   86 (340)
                      ..||+|+|+ |.+|+.++..|+..|. .+|.|+|.+.                   .+..  +..+.+.....++.....
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            469999998 9999999999988774 6999999875                   1222  223333222234444321


Q ss_pred             C---CccccccCCCCEEEEcC
Q 019519           87 N---DQLGQALEDSDVVIIPA  104 (340)
Q Consensus        87 ~---~d~~~al~~aDiVi~~a  104 (340)
                      .   .+..+.++++|+||.+.
T Consensus       109 ~~~~~~~~~~~~~~DvVi~~~  129 (249)
T 1jw9_B          109 LLDDAELAALIAEHDLVLDCT  129 (249)
T ss_dssp             CCCHHHHHHHHHTSSEEEECC
T ss_pred             cCCHhHHHHHHhCCCEEEEeC
Confidence            1   12334578999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.87  E-value=0.03  Score=51.16  Aligned_cols=96  Identities=20%  Similarity=0.195  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      +.++|+|+|+ |.+|..++..+...+.  +|..+|.+.....  .+....  .....   ..++++.+++||+|+.+...
T Consensus       154 ~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g--~~~~~---~~~l~~~l~~aDvVi~~~p~  223 (293)
T 3d4o_A          154 HGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEMG--MEPFH---ISKAAQELRDVDVCINTIPA  223 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT--SEEEE---GGGHHHHTTTCSEEEECCSS
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC--CeecC---hhhHHHHhcCCCEEEECCCh
Confidence            4569999998 9999999999988776  8999998652211  122111  12211   13566778999999998632


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCc
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNS  150 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NP~d~  150 (340)
                          ++-       |.       +.+....|.+++++++ +|.++
T Consensus       224 ----~~i-------~~-------~~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          224 ----LVV-------TA-------NVLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             ----CCB-------CH-------HHHHHSCTTCEEEECSSTTCSB
T ss_pred             ----HHh-------CH-------HHHHhcCCCCEEEEecCCCCCC
Confidence                221       11       1223335788999987 77664

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.84  E-value=0.042  Score=50.96  Aligned_cols=115  Identities=18%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHH----HHHHHhcCCCCceEEEEe-cCCc---cccccC-
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPG----VAADVGHINTRSEVAGYM-GNDQ---LGQALE-   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~----~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-   95 (340)
                      .+.|.|+||+|.+|.+++..|+..|.  +|++.+.+.   ...    ....+....  .++.... +-+|   ..++++ 
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~Dvtd~~~v~~~~~~   80 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDND--VDLRTLELDVQSQVSVDRAIDQ   80 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHH
Confidence            35799999999999999999999987  888776642   111    111111111  1232221 1122   223333 


Q ss_pred             ------CCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 019519           96 ------DSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ------~aDiVi~~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  147 (340)
                            ..|++|+.||.... +  ..+   -...+..|+.....+.+.+    ++. ..+.||++|.-
T Consensus        81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS~  147 (324)
T 3u9l_A           81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSS  147 (324)
T ss_dssp             HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEecc
Confidence                  89999999996421 1  122   2334566666555554444    544 34666766543

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.84  E-value=0.022  Score=53.10  Aligned_cols=102  Identities=13%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             cccCCC-CCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC
Q 019519           17 GARGYS-SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        17 ~~~~~~-~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~   95 (340)
                      .|.+.. ......++|+|||. |.+|+.++..+...|.  +|..+|......     .  .. .....   ..++++.++
T Consensus       125 ~W~~~~~~~~l~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~--~~-~~~~~---~~~l~ell~  190 (324)
T 3evt_A          125 QWALPMTTSTLTGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPA-----D--HF-HETVA---FTATADALA  190 (324)
T ss_dssp             CSSCSSCCCCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCC-----T--TC-SEEEE---GGGCHHHHH
T ss_pred             CcccCCCCccccCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchh-----H--hH-hhccc---cCCHHHHHh
Confidence            454432 23335579999998 9999999999987777  999999764210     0  01 11111   246778899


Q ss_pred             CCCEEEEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           96 DSDVVIIPAGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +||+|++..-. +...+.-       |       .+.+....|.+++|+++-
T Consensus       191 ~aDvV~l~lPlt~~t~~li-------~-------~~~l~~mk~gailIN~aR  228 (324)
T 3evt_A          191 TANFIVNALPLTPTTHHLF-------S-------TELFQQTKQQPMLINIGR  228 (324)
T ss_dssp             HCSEEEECCCCCGGGTTCB-------S-------HHHHHTCCSCCEEEECSC
T ss_pred             hCCEEEEcCCCchHHHHhc-------C-------HHHHhcCCCCCEEEEcCC
Confidence            99999997421 1111210       1       122344457899998864

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.82  E-value=0.016  Score=52.45  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.+.
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSA   39 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            45899999999999999999999987  899999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.80  E-value=0.026  Score=51.17  Aligned_cols=69  Identities=14%  Similarity=0.292  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .+||+|||+ |.+|..++..|...+.  +|.++|.+..+  +.++....   .+...   .++.+.++++|+||.+...+
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~--~~~l~~~~---g~~~~---~~~~~~~~~aDiVi~atp~~  197 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEK--AIKLAQKF---PLEVV---NSPEEVIDKVQVIVNTTSVG  197 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHH--HHHHTTTS---CEEEC---SCGGGTGGGCSEEEECSSTT
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHH--HHHHHHHc---CCeee---hhHHhhhcCCCEEEEeCCCC
Confidence            369999998 9999999999988776  99999986422  23343322   13322   25667889999999986443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.78  E-value=0.0074  Score=57.96  Aligned_cols=104  Identities=21%  Similarity=0.331  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCce---------EEEEec----------
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSE---------VAGYMG----------   86 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~---------v~~~~~----------   86 (340)
                      ++.||+|+|+ |.+|...+..+...|.  +|..+|++.. ...+.++........         ...+..          
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~  265 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ  265 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhh
Confidence            4579999998 9999999998887776  8999999873 233333321000000         000110          


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        87 ~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ..++.+++++||+||.++..|-+....   +      +.+   +.++...|.++|+.++
T Consensus       266 ~~~l~e~l~~aDVVI~tvlipg~~ap~---L------vt~---emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          266 AALVAEHIAKQDIVITTALIPGRPAPR---L------VTR---EMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSSSCCCC---C------BCH---HHHTTSCTTCEEEETT
T ss_pred             HhHHHHHhcCCCEEEECCcCCCCCCCE---E------ecH---HHHhcCCCCCEEEEEe
Confidence            124567889999999998766322110   0      012   3333445888888775

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.78  E-value=0.053  Score=52.66  Aligned_cols=126  Identities=18%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCC-CCEEEEc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIP  103 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~-aDiVi~~  103 (340)
                      +.+||.|+|. |..|.+.|..|...|+  +|..+|.++.  ......|.....  ++.  .+. +..+.+.+ +|+||.+
T Consensus         8 ~~k~v~viG~-G~sG~s~A~~l~~~G~--~V~~~D~~~~~~~~~~~~L~~~gi--~~~--~g~-~~~~~~~~~~d~vv~s   79 (451)
T 3lk7_A            8 ENKKVLVLGL-ARSGEAAARLLAKLGA--IVTVNDGKPFDENPTAQSLLEEGI--KVV--CGS-HPLELLDEDFCYMIKN   79 (451)
T ss_dssp             TTCEEEEECC-TTTHHHHHHHHHHTTC--EEEEEESSCGGGCHHHHHHHHTTC--EEE--ESC-CCGGGGGSCEEEEEEC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEeCCcccCChHHHHHHhCCC--EEE--ECC-ChHHhhcCCCCEEEEC
Confidence            3469999998 9999999999999998  9999998651  122234443332  333  232 22344566 9999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg  163 (340)
                      .|+|...-+ ......++++++.++- ...+..+ ..+|-+|-..+  +.|.+++.+++..|
T Consensus        80 pgi~~~~p~-~~~a~~~gi~v~~~~e-~~~~~~~-~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           80 PGIPYNNPM-VKKALEKQIPVLTEVE-LAYLVSE-SQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             TTSCTTSHH-HHHHHHTTCCEECHHH-HHHHHCC-SEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             CcCCCCChh-HHHHHHCCCcEEeHHH-HHHHhcC-CCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            888743211 1111233444443322 2222333 36677776665  66777777788777

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.75  E-value=0.037  Score=54.47  Aligned_cols=132  Identities=14%  Similarity=0.259  Sum_probs=78.1

Q ss_pred             CCeEEEEcCCCChHHH-HHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~-~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      .+||.|+|. |-.|.+ +|..|...|+  +|...|..+.. ....|.....  .+  ..+ .+ .+.+.++|+||.+-|+
T Consensus        22 ~~~v~viGi-G~sG~s~~A~~l~~~G~--~V~~~D~~~~~-~~~~l~~~gi--~~--~~g-~~-~~~~~~~d~vV~Spgi   91 (494)
T 4hv4_A           22 VRHIHFVGI-GGAGMGGIAEVLANEGY--QISGSDLAPNS-VTQHLTALGA--QI--YFH-HR-PENVLDASVVVVSTAI   91 (494)
T ss_dssp             CCEEEEETT-TSTTHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTTC--EE--ESS-CC-GGGGTTCSEEEECTTS
T ss_pred             CCEEEEEEE-cHhhHHHHHHHHHhCCC--eEEEEECCCCH-HHHHHHHCCC--EE--ECC-CC-HHHcCCCCEEEECCCC
Confidence            369999998 888985 8989999998  99999987632 1223443331  23  323 23 3568899999999888


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCCCceEe
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d--~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      |...-+ ......++++++.++ +.+.+......+|-+|-..+  +.|.+++.+++.+| +++.-++|
T Consensus        92 ~~~~p~-~~~a~~~gi~v~~~~-e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g-~~~~~~~g  156 (494)
T 4hv4_A           92 SADNPE-IVAAREARIPVIRRA-EMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG-LDPTFVNG  156 (494)
T ss_dssp             CTTCHH-HHHHHHTTCCEEEHH-HHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT-CCCEEEEE
T ss_pred             CCCCHH-HHHHHHCCCCEEcHH-HHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC-CCCEEEEC
Confidence            742211 111112334433221 11122222334566766665  67777777888887 65433344

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.73  E-value=0.016  Score=54.32  Aligned_cols=94  Identities=22%  Similarity=0.294  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...++|+|||. |.+|+.++..+...+.  +|..+|.+.....+.++   .    +..    .++++.+++||+|++..-
T Consensus       163 l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~P  228 (335)
T 2g76_A          163 LNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF---G----VQQ----LPLEEIWPLCDFITVHTP  228 (335)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHGGGCSEEEECCC
T ss_pred             CCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----cee----CCHHHHHhcCCEEEEecC
Confidence            45679999998 9999999999887665  89999987533222211   1    111    245688999999999753


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ..  +. ++. ++  |    .   +.+....|++++|+++-
T Consensus       229 ~t--~~-t~~-li--~----~---~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          229 LL--PS-TTG-LL--N----D---NTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CC--TT-TTT-SB--C----H---HHHTTSCTTEEEEECSC
T ss_pred             CC--HH-HHH-hh--C----H---HHHhhCCCCcEEEECCC
Confidence            21  11 110 00  1    1   22333457889988865

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.73  E-value=0.043  Score=48.80  Aligned_cols=117  Identities=13%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCC--CChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEe-cCCc---cccc----
Q 019519           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA----   93 (340)
Q Consensus        27 ~~~KI~IiGaa--G~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a----   93 (340)
                      +.+++.|+||+  |.+|.+++..|+..+.  .++++|.+..   .....++.... ..++.... +-+|   .+++    
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHH
Confidence            45689999998  7999999999999987  8999988752   23333443211 11222211 1112   1122    


Q ss_pred             ---cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 019519           94 ---LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        94 ---l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  147 (340)
                         +...|++|+.||.....   ..+.   ...+..|+.-.    +.+.+.+.+.. .+.+|+++..
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~  161 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASM  161 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEccc
Confidence               23679999999875322   2222   23445565544    44444445543 4566666543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.70  E-value=0.014  Score=54.91  Aligned_cols=93  Identities=25%  Similarity=0.319  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...++|+|||. |.+|+.++..+...|.  +|..+|........   .. .    ....   .++++.+++||+|++..-
T Consensus       171 l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~---~~-g----~~~~---~~l~ell~~sDvV~l~~P  236 (345)
T 4g2n_A          171 LTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHAL---EE-G----AIYH---DTLDSLLGASDIFLIAAP  236 (345)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHH---HT-T----CEEC---SSHHHHHHTCSEEEECSC
T ss_pred             cCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhh---hc-C----CeEe---CCHHHHHhhCCEEEEecC
Confidence            45679999998 9999999999987776  99999987522111   11 1    1211   356788999999999752


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          106 V-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       106 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      . +...+.     +  |    .   +.+....|.+++|+++-
T Consensus       237 lt~~T~~l-----i--~----~---~~l~~mk~gailIN~aR  264 (345)
T 4g2n_A          237 GRPELKGF-----L--D----H---DRIAKIPEGAVVINISR  264 (345)
T ss_dssp             CCGGGTTC-----B--C----H---HHHHHSCTTEEEEECSC
T ss_pred             CCHHHHHH-----h--C----H---HHHhhCCCCcEEEECCC
Confidence            2 111111     0  1    1   22334458899998864

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.68  E-value=0.0041  Score=56.08  Aligned_cols=113  Identities=23%  Similarity=0.265  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHH-----HHHhcCCCCceEEEEecCCccccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-----ADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~-----~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.+......     .|+.+..   .+....  ....+.+...|++|+
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~~--~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGLP--GAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHHH--HHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHHH--HHHHHhcCCCCEEEE
Confidence            45889999999999999999999987  89999986521000     0000000   000000  001122357999999


Q ss_pred             cCCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 019519          103 PAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNPV  148 (340)
Q Consensus       103 ~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP~  148 (340)
                      .||.....   ..+.   ...+..|+.-...+++.    +.+. ..+.||++|...
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~  155 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCW  155 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSB
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHH
Confidence            99975321   1222   23445566554444444    4544 356777776544

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.65  E-value=0.0089  Score=52.01  Aligned_cols=105  Identities=17%  Similarity=0.157  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .+++.|+||+|.+|.+++..|+..+.  .|++.|.+..    .|+.+..   .+.      ...+.+...|++|+.||..
T Consensus         6 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v~------~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            6 KTVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SVY------HYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HHH------HHHHHHCSEEEEEECCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HHH------HHHHHhCCCCEEEECCCCC
Confidence            35789999999999999999998887  8999886532    1222111   010      0112235789999999864


Q ss_pred             CCC----CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519          108 RKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus       108 ~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                      ...    ..+   ....+..|+.-...+.+.+..+- +.+.|+++|..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence            221    223   23456678887777777776653 34677777643

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=95.65  E-value=0.0043  Score=56.26  Aligned_cols=64  Identities=11%  Similarity=0.132  Sum_probs=36.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceE-EEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el-~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +|||+|||+ |.+|+.++..|... +  +| .++|.++...  ..+.... ..   .   .+|+++++++||+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~~--~~~~~~~-g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDRA--RNLAEVY-GG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHHH--HHHHHHT-CC---C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHHH--HHHHHHc-CC---c---cCCHHHHHhcCCEEEEeC
Confidence            479999998 99999999888766 4  77 4899865221  1222111 11   1   135567788999999985

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.62  E-value=0.013  Score=55.79  Aligned_cols=106  Identities=24%  Similarity=0.274  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCce-----EEEEe----------cCCcc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSE-----VAGYM----------GNDQL   90 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~-----v~~~~----------~~~d~   90 (340)
                      ++.||+|+|+ |.+|...+..+...|.  +|..+|.+.. ...+.++.-......     ...+.          ...++
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l  259 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQAL  259 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence            4579999998 9999999988887776  8999999862 333333321000000     00000          11245


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      .+++++||+||.++..|-.....   +      +.++   .++...|.++|+.++-+
T Consensus       260 ~e~l~~aDIVI~tv~iPg~~ap~---L------vt~e---mv~~MkpGsVIVDvA~d  304 (381)
T 3p2y_A          260 EDAITKFDIVITTALVPGRPAPR---L------VTAA---AATGMQPGSVVVDLAGE  304 (381)
T ss_dssp             HHHHTTCSEEEECCCCTTSCCCC---C------BCHH---HHHTSCTTCEEEETTGG
T ss_pred             HHHHhcCCEEEECCCCCCcccce---e------ecHH---HHhcCCCCcEEEEEeCC
Confidence            68899999999988766321110   0      1122   33334578888877644

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.60  E-value=0.024  Score=53.70  Aligned_cols=94  Identities=16%  Similarity=0.282  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ....++|+|||. |.+|+.++..+..-|.  +|..+|.......+.+.   .    +..    .++++.+++||+|++..
T Consensus       173 ~l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~  238 (365)
T 4hy3_A          173 LIAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN---G----VEP----ASLEDVLTKSDFIFVVA  238 (365)
T ss_dssp             CSSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHHHSCSEEEECS
T ss_pred             ccCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc---C----eee----CCHHHHHhcCCEEEEcC
Confidence            345679999998 9999999998876666  99999986532222221   1    111    24678899999999974


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                        |..+. ++. ++  |       .+.+....|.+++|+++
T Consensus       239 --Plt~~-T~~-li--~-------~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          239 --AVTSE-NKR-FL--G-------AEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             --CSSCC-----CC--C-------HHHHHTSCTTCEEEECS
T ss_pred             --cCCHH-HHh-hc--C-------HHHHhcCCCCcEEEECc
Confidence              22111 110 11  1       12344445889999885

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.60  E-value=0.016  Score=53.06  Aligned_cols=67  Identities=12%  Similarity=0.293  Sum_probs=44.0

Q ss_pred             CCCCeEEEEcCCCChHHH-HHHHHHhCCCcceEE-EEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLA-LYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~-~a~~l~~~~~~~el~-L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      |+++||+|||+ |.+|.. ++..+...+.+ +++ ++|.++..  ..+.++.   . +.   +   +|+++.++++|+|+
T Consensus         4 M~~~~igiIG~-G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~~---~-~~---~---~~~~~ll~~~D~V~   71 (308)
T 3uuw_A            4 MKNIKMGMIGL-GSIAQKAYLPILTKSERF-EFVGAFTPNKVKREKICSDYR---I-MP---F---DSIESLAKKCDCIF   71 (308)
T ss_dssp             -CCCEEEEECC-SHHHHHHTHHHHTSCSSS-EEEEEECSCHHHHHHHHHHHT---C-CB---C---SCHHHHHTTCSEEE
T ss_pred             cccCcEEEEec-CHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcC---C-CC---c---CCHHHHHhcCCEEE
Confidence            56789999998 999986 77777654432 555 89987622  2222221   1 11   2   46678788999999


Q ss_pred             EcC
Q 019519          102 IPA  104 (340)
Q Consensus       102 ~~a  104 (340)
                      ++.
T Consensus        72 i~t   74 (308)
T 3uuw_A           72 LHS   74 (308)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            974

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=95.60  E-value=0.013  Score=58.23  Aligned_cols=70  Identities=26%  Similarity=0.349  Sum_probs=50.1

Q ss_pred             CCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        21 ~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      |.......++|+|||. |.+|+.++..|...+.  +|+.+|.+.....+.++.       +..    .++.+.+++||+|
T Consensus       135 ~~~~~l~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~----~~l~e~~~~aDvV  200 (529)
T 1ygy_A          135 FSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFI  200 (529)
T ss_dssp             CCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEE
T ss_pred             cCccccCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE----cCHHHHHhcCCEE
Confidence            3333345679999998 9999999999987776  899999876332333222       111    1356788999999


Q ss_pred             EEcC
Q 019519          101 IIPA  104 (340)
Q Consensus       101 i~~a  104 (340)
                      +++.
T Consensus       201 ~l~~  204 (529)
T 1ygy_A          201 SVHL  204 (529)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9985

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=95.58  E-value=0.039  Score=52.55  Aligned_cols=34  Identities=32%  Similarity=0.545  Sum_probs=27.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~   60 (340)
                      |+++||+|+||+|.+|..+...|...+. .||..+
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~-~el~~l   50 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPE-FEIHAL   50 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSS-EEEEEE
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCC-ceEEEe
Confidence            6678999999999999999988877664 377544

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.58  E-value=0.021  Score=53.45  Aligned_cols=66  Identities=24%  Similarity=0.361  Sum_probs=48.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...++|+|||. |.+|+.++..+...+.  +|..+|.+.....+.++.       +..    .++++.+++||+|+++..
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~----~~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKELK-------ARY----MDIDELLEKSDIVILALP  209 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHHT-------EEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhcC-------cee----cCHHHHHhhCCEEEEcCC
Confidence            35679999998 9999999999987776  899999876432222221       222    245677899999999863

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=95.57  E-value=0.074  Score=47.19  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHL   39 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999987  899999875

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=95.53  E-value=0.013  Score=52.31  Aligned_cols=61  Identities=15%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEE-EEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+|+||+|+|+ |.+|+.++..+...+.  +|+ .+|.+...       +.    .+..   ++|+++.+ ++|+||-..
T Consensus         1 M~MmkI~ViGa-GrMG~~i~~~l~~~~~--eLva~~d~~~~~-------~~----gv~v---~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            1 MASMKILLIGY-GAMNQRVARLAEEKGH--EIVGVIENTPKA-------TT----PYQQ---YQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC---------C----CSCB---CSCTTTCT-TCSEEEECS
T ss_pred             CCceEEEEECc-CHHHHHHHHHHHhCCC--EEEEEEecCccc-------cC----CCce---eCCHHHHh-CCCEEEEeC
Confidence            45799999998 9999999998888776  655 47876431       11    1111   24666666 999998543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.53  E-value=0.01  Score=55.86  Aligned_cols=66  Identities=26%  Similarity=0.407  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|||. |.+|+.++..+...|.  +|..+|.........++.       +...   .++++.+++||+|++..
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~~---~~l~ell~~aDvV~l~~  231 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQRV---STLQDLLFHSDCVTLHC  231 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEEC---SSHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-------Ceec---CCHHHHHhcCCEEEEcC
Confidence            34579999998 9999999999987776  899999865322222221       1111   24568889999999975

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.51  E-value=0.0062  Score=57.53  Aligned_cols=99  Identities=19%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCC----cceEEEEeCCCcHHHHHHHhcCCC----CceEEEEecCCccccccCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDIANTPGVAADVGHINT----RSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~----~~el~L~D~~~~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~a   97 (340)
                      |+|+||+|+||+|.+|+.+...|...+.    ..|++++-.....+...+-.|...    ...+..    .| .++++++
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~----~~-~~~~~~~   81 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEP----TE-AAVLGGH   81 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE----CC-HHHHTTC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeecc----CC-HHHhcCC
Confidence            5568999999999999999998887761    236777643221111111111111    112221    13 2557899


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      |+||++.|..    .            .+++++.+ +.  .+++|..|+|-
T Consensus        82 DvVf~alg~~----~------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           82 DAVFLALPHG----H------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             SEEEECCTTS----C------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             CEEEECCCCc----c------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            9999986432    1            23444544 32  35777778775

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.50  E-value=0.015  Score=55.45  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC----C-cH-----HHHHHHhcCCCCceEEEEecCCccccccCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA----N-TP-----GVAADVGHINTRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~----~-~~-----~~~~dl~~~~~~~~v~~~~~~~d~~~al~~   96 (340)
                      +..||+|+|| |.+|..++..|...|. .+|+++|.+    . ..     .....+.+.. ..    .....++.+++++
T Consensus       191 ~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~-~~----~~~~~~L~eav~~  263 (388)
T 1vl6_A          191 EEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARIT-NP----ERLSGDLETALEG  263 (388)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-CT----TCCCSCHHHHHTT
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhh-hc----cCchhhHHHHHcc
Confidence            3469999998 9999999988887663 689999997    2 11     1112232221 11    0113568999999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-ccHHHHHHHHHHhCCCCCCceEecc
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN-STVPIAAEVFKKAGTYNEKKLFGVT  174 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d-~~t~~~~~~~~~sg~~~~~kviG~~  174 (340)
                      +|++|-+.+ |   +.-.           +++.+.|   +++++|+=.+||.- +..+-+   + ..|    ..+++..
T Consensus       264 ADVlIG~Sa-p---~l~t-----------~emVk~M---a~~pIIfalSNPt~E~~p~~a---~-~~g----~~i~atG  316 (388)
T 1vl6_A          264 ADFFIGVSR-G---NILK-----------PEWIKKM---SRKPVIFALANPVPEIDPELA---R-EAG----AFIVATG  316 (388)
T ss_dssp             CSEEEECSC-S---SCSC-----------HHHHTTS---CSSCEEEECCSSSCSSCHHHH---H-HTT----CSEEEES
T ss_pred             CCEEEEeCC-C---CccC-----------HHHHHhc---CCCCEEEEcCCCCCCCCHHHH---H-Hhc----CeEEEeC
Confidence            999988764 3   3211           2222222   25778888899975 343332   3 334    3677764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.49  E-value=0.054  Score=52.54  Aligned_cols=91  Identities=22%  Similarity=0.219  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH-HHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...+|+|+|. |.||..++..+...|.  +|..+|+++... .+.  .+ .+  .+      .+++++++.||+|+.+.|
T Consensus       246 ~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A~--~~-G~--~v------v~LeElL~~ADIVv~atg  311 (464)
T 3n58_A          246 AGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQAA--MD-GF--EV------VTLDDAASTADIVVTTTG  311 (464)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHH--HT-TC--EE------CCHHHHGGGCSEEEECCS
T ss_pred             cCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHHH--hc-Cc--ee------ccHHHHHhhCCEEEECCC
Confidence            3469999998 9999999999887776  899999875221 111  11 11  11      235788999999998754


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .+   +.       -|    .   +.+....|.+++||++...
T Consensus       312 t~---~l-------I~----~---e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          312 NK---DV-------IT----I---DHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             SS---SS-------BC----H---HHHHHSCTTEEEEECSSST
T ss_pred             Cc---cc-------cC----H---HHHhcCCCCeEEEEcCCCC
Confidence            32   11       01    1   2233345889999987654

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.47  E-value=0.079  Score=52.43  Aligned_cols=116  Identities=17%  Similarity=0.171  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-----HHHHHHHhcCCCCceEEEEe-cCCc---cccccC--C
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE--D   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~--~   96 (340)
                      ..+|.|+||+|.+|..++..|+..+. ..|+|++.+..     .....++....  .++.... +-+|   +.+.++  .
T Consensus       259 ~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dvtd~~~v~~~~~~~~  335 (511)
T 2z5l_A          259 SGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGHG--CEVVHAACDVAERDALAALVTAYP  335 (511)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTTT--CEEEEEECCSSCHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHhcCC
Confidence            46899999999999999999988775 35899987641     22334454332  2444432 1223   223343  3


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      .|+||+++|.....   ..+.   ...+..|+.....+.+.+....+...||++|.
T Consensus       336 ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS  391 (511)
T 2z5l_A          336 PNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS  391 (511)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred             CcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence            89999999975422   1222   23456677777777776654412234555543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.43  E-value=0.027  Score=52.38  Aligned_cols=68  Identities=10%  Similarity=0.105  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+|+|||+ |.+|...+..|.....+.++.++|.+.  ++..+.++....  ..+. .   +++++++ ++|+|+++-
T Consensus       126 ~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~--~~~~-~---~~~~e~v-~aDvVi~aT  195 (322)
T 1omo_A          126 SVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISAS-V---QPAEEAS-RCDVLVTTT  195 (322)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEE-E---CCHHHHT-SSSEEEECC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC--ceEE-E---CCHHHHh-CCCEEEEee
Confidence            59999998 999999888777633457999999875  233343443211  1233 3   4567888 999999964

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.42  E-value=0.058  Score=52.05  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH-HHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ..+|+|+|+ |.+|..++..+...|.  +|..+|+++... .+.  .+ .    ...    .++++++++||+|+.+.|.
T Consensus       220 GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~--~~-G----~~v----~~Leeal~~ADIVi~atgt  285 (435)
T 3gvp_A          220 GKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQAC--MD-G----FRL----VKLNEVIRQVDIVITCTGN  285 (435)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH--HT-T----CEE----CCHHHHTTTCSEEEECSSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHH--Hc-C----CEe----ccHHHHHhcCCEEEECCCC
Confidence            459999998 9999999999987776  899999875221 121  11 1    111    2467889999999997443


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      +   +.-       |    .+   .+....|.+++++++.+..
T Consensus       286 ~---~lI-------~----~e---~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          286 K---NVV-------T----RE---HLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             S---CSB-------C----HH---HHHHSCTTEEEEECSSTTT
T ss_pred             c---ccC-------C----HH---HHHhcCCCcEEEEecCCCc
Confidence            2   111       1    01   2233357899999988743

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.40  E-value=0.012  Score=55.69  Aligned_cols=74  Identities=18%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCC----ceEEEEecCCccccccCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR----SEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~----~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      |+++||+|+||+|.+|..++..|...+.+ |++.+......+...+-.|..+.    ..+..    .+ ++.++++|+||
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~----~~-~~~~~~vDvVf   87 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS----VK-DADFSTVDAVF   87 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC----GG-GCCGGGCSEEE
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee----cc-hhHhcCCCEEE
Confidence            44579999998899999999988876643 56555433322222221221111    11111    12 34567999999


Q ss_pred             EcCC
Q 019519          102 IPAG  105 (340)
Q Consensus       102 ~~ag  105 (340)
                      ++.+
T Consensus        88 ~atp   91 (359)
T 1xyg_A           88 CCLP   91 (359)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9864

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=95.38  E-value=0.049  Score=50.57  Aligned_cols=71  Identities=15%  Similarity=0.145  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHH-hCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~-~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~  102 (340)
                      ++++||+|||+ |.+|...+..+. ..+-+.-+.++|.++...  .++......+  ..+   +|+++.++  ++|+|++
T Consensus         6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~--~~~a~~~g~~--~~~---~~~~~~l~~~~~D~V~i   77 (346)
T 3cea_A            6 RKPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSNQL--EWAKNELGVE--TTY---TNYKDMIDTENIDAIFI   77 (346)
T ss_dssp             CCCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHHHH--HHHHHTTCCS--EEE---SCHHHHHTTSCCSEEEE
T ss_pred             CCcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHHHH--HHHHHHhCCC--ccc---CCHHHHhcCCCCCEEEE
Confidence            45689999998 999998888877 443222256889875222  1222211111  222   45667675  7999999


Q ss_pred             cC
Q 019519          103 PA  104 (340)
Q Consensus       103 ~a  104 (340)
                      +.
T Consensus        78 ~t   79 (346)
T 3cea_A           78 VA   79 (346)
T ss_dssp             CS
T ss_pred             eC
Confidence            85

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=95.38  E-value=0.028  Score=53.33  Aligned_cols=70  Identities=19%  Similarity=0.327  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCChHHHHHH-HHHhCCC-cceEEEEeCCCcHHHH-HHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~-~l~~~~~-~~el~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |||+|+||+|.+|+.+.. .|...++ ..++.++.... .|.. .++...  ...+..   .++. +.++++|+|+++.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCCh-hHhccCCEEEECCC
Confidence            699999999999999998 7777664 46888886543 2211 112111  112221   1232 45789999999854

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=95.38  E-value=0.1  Score=52.82  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC---------CC--cHHHHHHHhcCCCCceEEEEe-cCCccccc-
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI---------AN--TPGVAADVGHINTRSEVAGYM-GNDQLGQA-   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~---------~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~~a-   93 (340)
                      +.+.+.|+||+|.+|..++..|+..|.  .|++.|.         +.  .+....++.....  .+.... ...+.++. 
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~D~~d~~~~~~~~   93 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA--KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG--EAVADYNSVIDGAKVI   93 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEC--------------CHHHHHHHHHHTTC--CEEECCCCGGGHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcccccccCCHHHHHHHHHHHHHhCC--eEEEEeCCHHHHHHHH
Confidence            446788999999999999999999987  8999987         22  2333334443221  122111 11111222 


Q ss_pred             ------cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 019519           94 ------LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 ------l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  146 (340)
                            +...|++|..||.....   ..+.   ...+..|+.-...+    .+.+++. ..+.||++|.
T Consensus        94 ~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~-~~g~IV~isS  161 (613)
T 3oml_A           94 ETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ-NYGRIIMTSS  161 (613)
T ss_dssp             C----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             HHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECC
Confidence                  23679999999975432   2232   23445566544444    4444433 3467777654

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=95.36  E-value=0.25  Score=44.23  Aligned_cols=155  Identities=14%  Similarity=0.097  Sum_probs=84.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCCc---c-------cccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (340)
                      +.+.+.|+||++-+|..++..|+..|.  .+++.|.++. ......+.....  +..... +-+|   .       .+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA--IPVVFARHAPDGAFLDALAQRQP--RATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCCHHHHHHHHHHCT--TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCcccHHHHHHHHhcCC--CEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            456788899999999999999999987  8999998762 222222322111  111111 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCC--CCCHHH---HHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 019519           95 EDSDVVIIPAGVPRKP--GMTRDD---LFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~--g~~r~~---~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~  165 (340)
                      -.-|++|..||.....  ..+..+   .+..|+.    ..+...+.+++.  .+.||+++.-..           ..| .
T Consensus        82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~-----------~~~-~  147 (258)
T 4gkb_A           82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISSKTA-----------VTG-Q  147 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCTHH-----------HHC-C
T ss_pred             CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEeehhh-----------ccC-C
Confidence            5789999999975433  233332   2344443    455666666543  377777764331           112 3


Q ss_pred             CCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       166 ~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      |..-.++.+.-....|-+.+|..++  +..|++-.+
T Consensus       148 ~~~~~Y~asKaav~~ltr~lA~ela--~~gIrVN~V  181 (258)
T 4gkb_A          148 GNTSGYCASKGAQLALTREWAVALR--EHGVRVNAV  181 (258)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            3222233322112235666777764  555655444

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.35  E-value=0.046  Score=51.44  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=26.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~   60 (340)
                      +++||+|+||+|.+|..++..|...+. .||+.+
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~-~elvai   35 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPY-LELVKV   35 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSS-EEEEEE
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCC-cEEEEE
Confidence            468999999889999999988776653 367666

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.35  E-value=0.033  Score=51.58  Aligned_cols=68  Identities=21%  Similarity=0.415  Sum_probs=49.0

Q ss_pred             CCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEE
Q 019519           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        23 ~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      ......++|+|||. |.+|+.++..+...|.  +|..+|.+.....+.++   .    +..    .++++.+++||+|++
T Consensus       137 ~~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvVvl  202 (313)
T 2ekl_A          137 GLELAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAEKI---N----AKA----VSLEELLKNSDVISL  202 (313)
T ss_dssp             CCCCTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHHhc---C----cee----cCHHHHHhhCCEEEE
Confidence            33445679999998 9999999999987776  99999987643222211   1    111    145678899999999


Q ss_pred             cC
Q 019519          103 PA  104 (340)
Q Consensus       103 ~a  104 (340)
                      +.
T Consensus       203 ~~  204 (313)
T 2ekl_A          203 HV  204 (313)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.35  E-value=0.032  Score=52.31  Aligned_cols=97  Identities=16%  Similarity=0.284  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHH-H----HhcCCCCceEEEEecCCcccccc-CCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAA-D----VGHINTRSEVAGYMGNDQLGQAL-EDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~-d----l~~~~~~~~v~~~~~~~d~~~al-~~a   97 (340)
                      .|+||+|+||+|.+|..+...|...+.+ |+..+...+   ..|... +    +... ....+...   .|. +.+ +++
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~-~~~~v~~~---~~~-~~~~~~~   76 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGI-VELPLQPM---SDI-SEFSPGV   76 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTT-CCCBEEEE---SSG-GGTCTTC
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCc-cceeEecc---CCH-HHHhcCC
Confidence            3679999999999999999988876543 776665433   222211 1    1111 11223221   032 345 899


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      |+||++.+                ...-+++++.+.+.  .+++|-.|.+
T Consensus        77 Dvvf~a~p----------------~~~s~~~~~~~~~~--g~~vIDlSa~  108 (337)
T 3dr3_A           77 DVVFLATA----------------HEVSHDLAPQFLEA--GCVVFDLSGA  108 (337)
T ss_dssp             SEEEECSC----------------HHHHHHHHHHHHHT--TCEEEECSST
T ss_pred             CEEEECCC----------------hHHHHHHHHHHHHC--CCEEEEcCCc
Confidence            99999853                12334555554433  4567666666

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=95.35  E-value=0.26  Score=39.98  Aligned_cols=107  Identities=11%  Similarity=0.061  Sum_probs=63.4

Q ss_pred             CCeEEEEcCC---CChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaa---G~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +.+|+|||++   |.+|..++..|...++  +  +++++....   ++   .   .+..+   .++.+.-...|+++++.
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~--~--v~~Vnp~~~---~i---~---G~~~y---~sl~~l~~~vDlvvi~v   85 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGY--D--VYPVNPKYE---EV---L---GRKCY---PSVLDIPDKIEVVDLFV   85 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTCS---EE---T---TEECB---SSGGGCSSCCSEEEECS
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCC--E--EEEECCCCC---eE---C---Ceecc---CCHHHcCCCCCEEEEEe
Confidence            5699999986   6899999988888887  5  566654210   11   0   12322   34445446899999984


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-c
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~  174 (340)
                        |              .+...++++++.+.+.+++++.   +-.....+. +..+..|    -+++|= |
T Consensus        86 --p--------------~~~~~~vv~~~~~~gi~~i~~~---~g~~~~~l~-~~a~~~G----i~vvGpnc  132 (144)
T 2d59_A           86 --K--------------PKLTMEYVEQAIKKGAKVVWFQ---YNTYNREAS-KKADEAG----LIIVANRC  132 (144)
T ss_dssp             --C--------------HHHHHHHHHHHHHHTCSEEEEC---TTCCCHHHH-HHHHHTT----CEEEESCC
T ss_pred             --C--------------HHHHHHHHHHHHHcCCCEEEEC---CCchHHHHH-HHHHHcC----CEEEcCCc
Confidence              2              2555666666666666655432   211222222 2245555    478886 6

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=95.34  E-value=0.1  Score=50.82  Aligned_cols=117  Identities=18%  Similarity=0.256  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHh-cCCCCceEEEEe-cCCcccccc-------CC-
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAGYM-GNDQLGQAL-------ED-   96 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~-~~~~~~~v~~~~-~~~d~~~al-------~~-   96 (340)
                      +...+.|+||+|.+|..++..|+..+.  +|+++|.+.......++. .... .-+.... ...+.++.+       -+ 
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga--~Vvl~~r~~~~~~l~~~~~~~~~-~~~~~Dvtd~~~v~~~~~~~~~~~g~~  288 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA--TVVAIDVDGAAEDLKRVADKVGG-TALTLDVTADDAVDKITAHVTEHHGGK  288 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECGGGHHHHHHHHHHHTC-EEEECCTTSTTHHHHHHHHHHHHSTTC
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCC-eEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence            345889999999999999999999887  899999865221111111 1111 0111110 111122222       23 


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 019519           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  146 (340)
                      .|+||+.||.....   .++.   ...+..|+.-...+.+.+....   +.+.||++|.
T Consensus       289 id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS  347 (454)
T 3u0b_A          289 VDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSS  347 (454)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECC
T ss_pred             ceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeC
Confidence            89999999976432   2332   3456678888888887776552   4567777764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.34  E-value=0.0092  Score=58.41  Aligned_cols=69  Identities=20%  Similarity=0.272  Sum_probs=45.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCc---cc-cccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~al~~aDiVi~~  103 (340)
                      .|||.|+|+ |.||+++|..|...++  +++++|.++..  ..++.+.....-+.+.  .++   ++ ..+++||.+|.+
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~~~~~--~v~vId~d~~~--~~~~~~~~~~~~i~Gd--~~~~~~L~~Agi~~ad~~ia~   75 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLVGENN--DITIVDKDGDR--LRELQDKYDLRVVNGH--ASHPDVLHEAGAQDADMLVAV   75 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTCSTTE--EEEEEESCHHH--HHHHHHHSSCEEEESC--TTCHHHHHHHTTTTCSEEEEC
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHhcCcEEEEEc--CCCHHHHHhcCCCcCCEEEEE
Confidence            589999998 9999999999988887  99999998621  1223221101122221  122   22 336899998875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.32  E-value=0.0098  Score=55.14  Aligned_cols=60  Identities=22%  Similarity=0.249  Sum_probs=45.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|||. |.+|+.++..+...+.  +|..+|.+.....            +.    ..++++.+++||+|+++.
T Consensus       142 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------------~~----~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          142 LQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------------YP----FLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------------SC----BCCHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------------cc----cCCHHHHHhhCCEEEEeC
Confidence            45679999998 9999999999987776  8999998652110            11    134567889999999975

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=95.28  E-value=0.021  Score=52.94  Aligned_cols=66  Identities=21%  Similarity=0.391  Sum_probs=45.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+++||+|+|+ |.+|+.++..+...+...-+.++|.+...    ++.   .  .+..+   +|+++.+.++|+||++.
T Consensus         1 M~~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~----~~~---~--gv~~~---~d~~~ll~~~DvViiat   66 (320)
T 1f06_A            1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL----DTK---T--PVFDV---ADVDKHADDVDVLFLCM   66 (320)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC----SSS---S--CEEEG---GGGGGTTTTCSEEEECS
T ss_pred             CCCCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHH----hhc---C--CCcee---CCHHHHhcCCCEEEEcC
Confidence            46789999997 99999998888766533335688887422    112   1  24332   46666568999999875

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.28  E-value=0.025  Score=50.70  Aligned_cols=35  Identities=34%  Similarity=0.588  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..||+|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus        28 ~~~VlvvG~-GglG~~va~~La~~Gv-g~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGL-GGLGTPAALYLAGAGV-GTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred             cCcEEEEcc-CHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence            469999998 9999999999998885 6999999763

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.26  E-value=0.02  Score=52.90  Aligned_cols=61  Identities=20%  Similarity=0.261  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|||. |.+|+.++..+...+.  +|..+|.+.. .   +    ..   .    ...++++.+++||+|+++.
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~---~----~~---~----~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E---G----PW---R----FTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C---S----SS---C----CBSCSHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c---c----Cc---c----cCCCHHHHHhhCCEEEEeC
Confidence            35679999998 9999999999987776  8999997643 0   0    11   0    1134678899999999985

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=95.25  E-value=0.032  Score=53.08  Aligned_cols=71  Identities=17%  Similarity=0.316  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCChHHHHHH-HHHhCCC-cceEEEEeCCCcHHHH-HHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~-~l~~~~~-~~el~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ++||+|+||+|.+|+-+.. .|...++ ..++.++.... .|.. .++...  ...+..   .++. +.++++|+|+++.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~~-~~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATSI-DDLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTCH-HHHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCCh-hHhcCCCEEEECC
Confidence            4799999999999999998 7777663 45888886543 1211 122211  112221   1232 4578999999986


Q ss_pred             C
Q 019519          105 G  105 (340)
Q Consensus       105 g  105 (340)
                      |
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.25  E-value=0.012  Score=55.26  Aligned_cols=91  Identities=18%  Similarity=0.327  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...++|+|||. |.+|+.++..+...|.  +|..+|.....    ....     .+..    .++++.+++||+|++..-
T Consensus       146 l~gktvgIiGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~----~~~~-----~~~~----~~l~ell~~aDvV~l~~P  209 (343)
T 2yq5_A          146 IYNLTVGLIGV-GHIGSAVAEIFSAMGA--KVIAYDVAYNP----EFEP-----FLTY----TDFDTVLKEADIVSLHTP  209 (343)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCG----GGTT-----TCEE----CCHHHHHHHCSEEEECCC
T ss_pred             cCCCeEEEEec-CHHHHHHHHHHhhCCC--EEEEECCChhh----hhhc-----cccc----cCHHHHHhcCCEEEEcCC
Confidence            34579999998 9999999999987776  99999987532    1111     1121    256788999999999753


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519          106 V-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       106 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      . +...+.-       |.       +.+....|.+++|+++-
T Consensus       210 lt~~t~~li-------~~-------~~l~~mk~gailIN~aR  237 (343)
T 2yq5_A          210 LFPSTENMI-------GE-------KQLKEMKKSAYLINCAR  237 (343)
T ss_dssp             CCTTTTTCB-------CH-------HHHHHSCTTCEEEECSC
T ss_pred             CCHHHHHHh-------hH-------HHHhhCCCCcEEEECCC
Confidence            2 1111221       11       12334458899998853

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.23  E-value=0.078  Score=52.02  Aligned_cols=67  Identities=15%  Similarity=0.232  Sum_probs=43.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC------CCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN------PLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~------~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +||+|||. |.+|.+++..|...      ++  ++++.+...  ....+.+..-.......      .+..+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~ta------~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGTL------GDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTCE------EEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCCC------CCHHHHHhcCCEE
Confidence            69999998 99999999999887      66  666555443  23333222211000001      2346889999999


Q ss_pred             EEcC
Q 019519          101 IIPA  104 (340)
Q Consensus       101 i~~a  104 (340)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9985

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.18  E-value=0.045  Score=52.00  Aligned_cols=77  Identities=23%  Similarity=0.161  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+..+|+|+|+ |.+|..++..+...|.  +|..+|.+... ..+.+..  .....+.. ....++.+.++++|+||.+.
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~~--g~~~~~~~-~~~~~l~~~l~~aDvVi~~~  239 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAEF--CGRIHTRY-SSAYELEGAVKRADLVIGAV  239 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT--TTSSEEEE-CCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhc--CCeeEecc-CCHHHHHHHHcCCCEEEECC
Confidence            35679999998 9999999999988776  89999987522 1222211  11111211 11234567788999999998


Q ss_pred             CCCC
Q 019519          105 GVPR  108 (340)
Q Consensus       105 g~~~  108 (340)
                      +.|.
T Consensus       240 ~~p~  243 (377)
T 2vhw_A          240 LVPG  243 (377)
T ss_dssp             CCTT
T ss_pred             CcCC
Confidence            8774

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.16  E-value=0.013  Score=51.71  Aligned_cols=107  Identities=14%  Similarity=0.144  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHh-CCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEe-cCC---cccccc-----CC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GND---QLGQAL-----ED   96 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~-~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al-----~~   96 (340)
                      ++++.|+||+|.+|.+++..|+. .+.  .+++.|.++. ...           .+.... +-+   +.++.+     ..
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~~~~~~   70 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAE-----------NLKFIKADLTKQQDITNVLDIIKNVS   70 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCT-----------TEEEEECCTTCHHHHHHHHHHTTTCC
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccc-----------cceEEecCcCCHHHHHHHHHHHHhCC
Confidence            45799999999999999999988 565  7888887652 110           111110 111   111222     27


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus        97 aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                      .|++|+.||.....   ..+   ....+..|+.-...+.+.+..+- +.+.||+++..
T Consensus        71 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~  128 (244)
T 4e4y_A           71 FDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSD  128 (244)
T ss_dssp             EEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCG
T ss_pred             CCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCH
Confidence            89999999974321   223   23456778877777777766553 23567766543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.16  E-value=0.026  Score=52.73  Aligned_cols=64  Identities=28%  Similarity=0.394  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ...++|+|||. |.+|+.++..+...+.  +|..+|...... ..++    .  ..     ..++++.+++||+|++..
T Consensus       144 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~----~--~~-----~~~l~ell~~aDvV~l~~  207 (333)
T 1j4a_A          144 VRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK----G--YY-----VDSLDDLYKQADVISLHV  207 (333)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT----T--CB-----CSCHHHHHHHCSEEEECS
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh----C--ee-----cCCHHHHHhhCCEEEEcC
Confidence            34579999998 9999999999987776  899999876332 2111    1  11     124567889999999985

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.16  E-value=0.026  Score=53.38  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcCCCCceEEEE-ecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVi~~  103 (340)
                      .+.++|+|+|+ |.+|..++..+...|.  +|+++|.++.+ ..+.+.  ...  .+... ....++.+.++++|+||.+
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~--~g~--~~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDV--FGG--RVITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--TTT--SEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHh--cCc--eEEEecCCHHHHHHHHhCCCEEEEC
Confidence            34579999998 9999999999988887  89999987522 112221  111  12211 1123556778899999999


Q ss_pred             CCCC
Q 019519          104 AGVP  107 (340)
Q Consensus       104 ag~~  107 (340)
                      ++.+
T Consensus       237 ~g~~  240 (369)
T 2eez_A          237 VLVP  240 (369)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            8765

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.15  E-value=0.051  Score=53.15  Aligned_cols=72  Identities=21%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-C-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CCc----cccccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-L-VSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ----LGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~al~~aDiV  100 (340)
                      ++||+|||+ |.||+.++..|++.+ + ..+|++.|.+.......+..  .  .++..... ..|    +.+.+++.|+|
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~--g--~~~~~~~Vdadnv~~~l~aLl~~~DvV   87 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQY--G--VSFKLQQITPQNYLEVIGSTLEENDFL   87 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHH--T--CEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhc--C--CceeEEeccchhHHHHHHHHhcCCCEE
Confidence            369999997 999999999998865 3 46899999876221111211  1  12222111 122    34466777999


Q ss_pred             EEcC
Q 019519          101 IIPA  104 (340)
Q Consensus       101 i~~a  104 (340)
                      |.++
T Consensus        88 IN~s   91 (480)
T 2ph5_A           88 IDVS   91 (480)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9854

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.11  E-value=0.045  Score=50.90  Aligned_cols=67  Identities=22%  Similarity=0.298  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEE-EEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~a  104 (340)
                      ++||+|||+ |.+|...+..|...+.+ +|+ ++|.+.....  .+.... .  ...+   +|+++.++  ++|+|+++.
T Consensus         4 ~~rvgiiG~-G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~--~~a~~~-g--~~~~---~~~~~~l~~~~~D~V~i~t   73 (344)
T 3euw_A            4 TLRIALFGA-GRIGHVHAANIAANPDL-ELVVIADPFIEGAQ--RLAEAN-G--AEAV---ASPDEVFARDDIDGIVIGS   73 (344)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHTT-T--CEEE---SSHHHHTTCSCCCEEEECS
T ss_pred             ceEEEEECC-cHHHHHHHHHHHhCCCc-EEEEEECCCHHHHH--HHHHHc-C--Ccee---CCHHHHhcCCCCCEEEEeC
Confidence            579999998 99999998888776432 554 8888752221  222211 1  2333   46777777  899999974

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.10  E-value=0.13  Score=45.18  Aligned_cols=74  Identities=9%  Similarity=0.046  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .+.++|.|+|+ |.||...+..|+..|.  +|.++|.+.... ..+|....   .+.......+ ++.+.++|+||.+-+
T Consensus        29 L~gk~VLVVGg-G~va~~ka~~Ll~~GA--~VtVvap~~~~~-l~~l~~~~---~i~~i~~~~~-~~dL~~adLVIaAT~  100 (223)
T 3dfz_A           29 LKGRSVLVVGG-GTIATRRIKGFLQEGA--AITVVAPTVSAE-INEWEAKG---QLRVKRKKVG-EEDLLNVFFIVVATN  100 (223)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHGGGCC--CEEEECSSCCHH-HHHHHHTT---SCEEECSCCC-GGGSSSCSEEEECCC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCCCHH-HHHHHHcC---CcEEEECCCC-HhHhCCCCEEEECCC
Confidence            44679999998 9999999999998876  899999764322 22333222   2222222222 366899999998765


Q ss_pred             CC
Q 019519          106 VP  107 (340)
Q Consensus       106 ~~  107 (340)
                      .+
T Consensus       101 d~  102 (223)
T 3dfz_A          101 DQ  102 (223)
T ss_dssp             CT
T ss_pred             CH
Confidence            44

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.09  E-value=0.04  Score=48.51  Aligned_cols=56  Identities=25%  Similarity=0.369  Sum_probs=41.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceE-EEEeCCCcHHHHHHHhcCCCCceEEEEecCCcccccc-CCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el-~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVi~~a  104 (340)
                      |||+|||+ |.+|+.++..|...++  ++ .++|.++. .     .      .  .+   +|+++.+ .++|+|+++.
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~~-~-----~------~--~~---~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRGE-H-----E------K--MV---RGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC-C-----T------T--EE---SSHHHHTTSCCSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCcc-h-----h------h--hc---CCHHHHhcCCCCEEEECC
Confidence            59999998 9999999988876666  76 68887641 1     0      0  22   4566767 6999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	5e-50
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	9e-50
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	1e-45
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	6e-37
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	9e-35
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	1e-32
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	3e-32
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	5e-32
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	1e-31
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	3e-31
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	4e-31
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	4e-31
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	6e-31
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	3e-30
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	4e-30
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	8e-30
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	8e-29
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	1e-28
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	6e-28
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	7e-28
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	5e-27
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	1e-26
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	1e-26
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	1e-26
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-26
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	6e-26
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	8e-26
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	1e-25
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	2e-25
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	3e-25
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	1e-24
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	1e-24
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	2e-24
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	3e-24
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	4e-24
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	5e-24
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	5e-24
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	2e-23
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	3e-23
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	5e-23
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	7e-22
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	7e-22
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	2e-21
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	4e-19
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	6e-19
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	2e-17
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	3e-14
d1nvmb1	157	c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge	0.003
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	0.003

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  162 bits (411), Expect = 5e-50
 Identities = 81/167 (48%), Positives = 104/167 (62%), Gaps = 1/167 (0%)

Query: 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
           VTTLD++R+ TF A        EV VPV+GGH+G+TILPL SQ     +  ++++  LTK
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV-SFTEQEVADLTK 59

Query: 233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFF 292
           R Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G   VVEC++V+       FF
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 119

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           +  + LGKNGVEE   +G LS FEQ  LE +   LK  I  G +F N
Sbjct: 120 SQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVN 166

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  161 bits (409), Expect = 9e-50
 Identities = 89/167 (53%), Positives = 119/167 (71%)

Query: 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
           VTTLD+VRA  F A    ++ A V+VPV+GGHAG TI+PL SQ TPK +   + +  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFF 292
           R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
           ++ + LGK G+E+ LG+G +S FE++ + +  PELKASI+KG +F  
Sbjct: 121 STPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK 167

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  150 bits (380), Expect = 1e-45
 Identities = 99/143 (69%), Positives = 119/143 (83%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
           ST+PI AEVFKK G YN  K+FG
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  127 bits (321), Expect = 6e-37
 Identities = 91/145 (62%), Positives = 108/145 (74%), Gaps = 3/145 (2%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           VN+TV IAAEV KKAG Y++ KLFG
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  123 bits (309), Expect = 9e-35
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANTPGVAADVGHINTRSE---V 81
            +AV GAAG I   L   +    +        L L     +      V      S    +
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
                     +  ED D  ++    PR PGM R  L +IN  I  D   A+      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 141 VNMISNPVNSTVPIAAE 157
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  116 bits (292), Expect = 1e-32
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN 87
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H     +    +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                 L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    I      K       ++FG+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  116 bits (291), Expect = 3e-32
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 7/162 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD----EDIKALT 231
           LD  R ++F A +  V++ ++N  V+GGH    +  +         ++D    E I  L 
Sbjct: 4   LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLV 63

Query: 232 KRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPF 291
           +RT++GG E+VE    +GSA  + A +     ++ +     V         Q    +  F
Sbjct: 64  ERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQY-GIDKTF 121

Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
               V+LG+NGVE++  +  L   + + L+K    +  + + 
Sbjct: 122 VGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKM 162

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  115 bits (289), Expect = 5e-32
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD----EDIKALT 231
           LD  R +TF A +A V+V +V   ++GGH    +            +++    + +  + 
Sbjct: 4   LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQIV 63

Query: 232 KRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPF 291
           +RT+ GG E+V      GSA  + A A A   +A LK    V  V      Q  + ++ F
Sbjct: 64  ERTRKGGGEIVNLL-KTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIYF 122

Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
               V LG  GVE++L L PL++ E   L      ++A+++ 
Sbjct: 123 G-VPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDT 162

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  113 bits (285), Expect = 1e-31
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+AV+GA G +G  LA       +   + L DIA         D+ H ++        G+
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  +I+NP
Sbjct: 62  DDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           V+    IA  V +K     E ++FG
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  114 bits (285), Expect = 3e-31
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 13/179 (7%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD  RAK   A K  V   +V   ++ G+   T  P  + A  K    +  +    K 
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 234 TQDGGTEVVEA---------KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQS 284
                 E +           KA K S+ +S A A          G      V        
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120

Query: 285 T---VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA 340
               V +   ++  V +     + V GL P++DF +E ++    EL    E   +F ++
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLSS 178

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  112 bits (282), Expect = 4e-31
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 30  KVAVLGAAGGIGQPLALL-----MKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG- 83
           +V V GAAG I   L        +        L L DI    GV   V        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 84  --YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI- 140
              +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY   ++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 141 VNMISNPVNSTVPIAAEVFKK 161
           V ++ NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  112 bits (281), Expect = 4e-31
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ V+GA G +G   A  +    L   L L D+      G A D+            +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    +A           ++++ G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  111 bits (280), Expect = 6e-31
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV+V+GAAG +G      + L  +   +   DI         VG     +    Y  N +
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP--DKEDDTVGQAADTNHGIAYDSNTR 59

Query: 90  LG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           +     +    SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I    S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +      +AG  + +++ G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  110 bits (275), Expect = 3e-30
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           K+ ++G  G +G   A  + +      + L D+         +  I+             
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
               L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
               +    F K    + +K+FG
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  110 bits (275), Expect = 4e-30
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 12/149 (8%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIANTPGVAADVGHINTRSE------V 81
           +VAV GAAG IG  L   +    ++   +  +  +   P     +  +    E      +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
           AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKK 169
           V ++ NP N+   IA   +K A   N + 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  108 bits (272), Expect = 8e-30
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRSEVAGYM 85
            KVA++GA G +G   A  M L    + L L D+      G A D+ H +    +++ Y 
Sbjct: 2   SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA 60

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + ++ ++S
Sbjct: 61  GDYS---DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +     +K       K+ G
Sbjct: 118 NPVDIITYMI----QKWSGLPVGKVIG 140

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  106 bits (266), Expect = 8e-29
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN 87
           +K++++GA G +G   A  +    L   + L  +   P G A D+   +        +  
Sbjct: 2   KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP
Sbjct: 61  TNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           +++   +AAEV      + ++++ G
Sbjct: 121 LDAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H N  +     
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173
            + +++NPV+  V +      +     + K+ G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score =  104 bits (261), Expect = 6e-28
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 7/169 (4%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD-----EDIK 228
             LD  R +     +  V+    +  V+G H                 L       +D +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 229 ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE 288
              K  +D      E    KG  + ++  + A  A+  +K L  V  V         + +
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKD 122

Query: 289 LPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
             F +    L  +G+  ++ +  L   E++ L+K    L   I+K +KF
Sbjct: 123 NVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATTLW-DIQKDLKF 169

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score =  103 bits (259), Expect = 7e-28
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 25  SVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG 83
           S+P+  KV ++G  G +G   A  M    +     + D+         +   + ++  A 
Sbjct: 1   SMPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAP 59

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +NPV+    I      K   + ++++ G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIG 144

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  102 bits (255), Expect = 5e-27
 Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +T  A     +   V+V V+G H    +            L +         
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 225 -EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQ 283
            + ++   ++T+    E++E K     A                K +  +   +E     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 284 STVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFAN 339
             +      +  V LGK+GVE +L L  L++ E E   K    LK +I +     N
Sbjct: 122 KDL----CISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINEITAEEN 172

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-26
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS 79
              +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   
Sbjct: 14  EEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFL 72

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +    + + +      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+ 
Sbjct: 73  QTPKIVAD-KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC 131

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+ ++SNPV+    +      K     + ++ G
Sbjct: 132 IIIVVSNPVDILTYVT----WKLSGLPKHRVIG 160

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score =  101 bits (252), Expect = 1e-26
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KVA++G+ G IG  +  L  L  L   + LYD+      G A D+ H+ +  +    + 
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65

Query: 87  ND-QLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
            +     AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 66  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           + +++NP++  V +  E            + G
Sbjct: 126 IIVVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score =  101 bits (253), Expect = 1e-26
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 11/171 (6%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T+LD  R +   A   NV+   V+  ++G H G T  P++S A        E +KA  + 
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEI 59

Query: 234 TQDGGTEVV--------EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST 285
            +D   ++         E    KG+    +A A A  + A L   N V  +      Q  
Sbjct: 60  KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYG 119

Query: 286 VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
           + +  +  +   + +NG++ +L + PL+D E+E ++K   +LK  +     
Sbjct: 120 IND-LYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 168

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  101 bits (251), Expect = 1e-26
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 4/163 (2%)

Query: 171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKAL 230
           FG   LD  R +   + + +  V  V   ++G H G   +P+FS+ +      +      
Sbjct: 1   FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEK 58

Query: 231 TKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELP 290
            +   D     ++    KG+     A   A   +A L     V         +    +  
Sbjct: 59  EQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHED-T 117

Query: 291 FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
            F   V LG NGVEE++    L D+EQ+ +     +L    +K
Sbjct: 118 AFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 159

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 99.9 bits (248), Expect = 6e-26
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 17/172 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +   A +  VNV  V+  + G H    +    S       ++D         
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 225 ---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF 281
              +  + + +  ++   ++     GKG+   ++  +G    +A L   N +  V     
Sbjct: 61  LDADKREEIHQEVKNAAYKI---INGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 282 VQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
               ++++        L + GV   +   P+SD E   L++    LK +  +
Sbjct: 118 DFHGISDICMS-VPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 167

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 99.2 bits (246), Expect = 8e-26
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 3/163 (1%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD  R +       +++   V+   +G H G +    +S              A    
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 234 TQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFA 293
                 E  +      +     +Y  A  A    K +            +       + +
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG-MYLS 119

Query: 294 SKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
               +G++GV     L  L+  EQE L + +  ++   ++ V 
Sbjct: 120 YPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVD 161

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.8 bits (245), Expect = 1e-25
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
             LD  R +     K  VN    +  V+G H   ++            L   +    T +
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 234 TQDGGTEVV--------EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST 285
            +     V         E    KG  + ++  +    A + LK L  V  V         
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 286 VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
           + E  F +    LG++G+ + + +  ++  E+  L+K    L    + 
Sbjct: 123 IKEEVFLSIPCVLGESGITDFVKV-NMTAEEEGLLKKSADTLWNMQKN 169

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 98.4 bits (244), Expect = 2e-25
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 16/174 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
             LD  R +   A K  ++ +  +  ++G H   ++           +L +         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDN 62

Query: 225 --EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV 282
             E+ K + K   +   EV++ K     A            ++ LK L+ +  V      
Sbjct: 63  DSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVA---DLIESMLKNLSRIHPVSTMVKG 119

Query: 283 QSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
              +    F +    L   G+  V+    L D E   L+K    L   I+K +K
Sbjct: 120 MYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVAQLKKSADTLW-DIQKDLK 171

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.4 bits (242), Expect = 3e-25
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INT 77
           + +   K+ V+G  G +G   A+ + L  L   LAL D       G A D+ H    ++T
Sbjct: 15  DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLST 73

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V G   N        +S +VII AG     G TR DL   N  I+K +   + +  P
Sbjct: 74  PKIVFGKDYNV-----SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP 128

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           +  + +++NPV+    +      K   +   ++ G
Sbjct: 129 DCKIIVVTNPVDILTYVVW----KISGFPVGRVIG 159

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 96.4 bits (239), Expect = 1e-24
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T+LD  R +     + NV+   V+  ++G H G +    +S AT       +  K     
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKE-QGV 58

Query: 234 TQDGGTEVVEAKAGKG----SATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVT-- 287
           + D   ++ +    K     +   +  Y          K +    + V            
Sbjct: 59  SDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYG 118

Query: 288 -ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKF 337
               +  +   +G  G+++++   PLS  E + ++     LK  +  G+  
Sbjct: 119 LNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGLAE 168

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 96.1 bits (238), Expect = 1e-24
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 16/171 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD +R +   + K  V+V  V+  ++G H    +           N+ +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 225 --EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV 282
             ED K + +  +  G  +++ K                        +  V  V+   + 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120

Query: 283 QSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
                     +    +   GV+EVL    L+  E+E L     ++K  + +
Sbjct: 121 IED----VAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 166

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 95.1 bits (236), Expect = 2e-24
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
            +V V+GA G +G      +    +   + L D   +   G A D  H    +     + 
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           +        D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +N
Sbjct: 66  HGD-YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    I      K      +++ G
Sbjct: 125 PVD----ILTYATWKFSGLPHERVIG 146

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 95.3 bits (236), Expect = 3e-24
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 6/164 (3%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD +R K   A    V++ EV   ++G H G +++PL S  +       +  +     
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 234 TQDGGTEVVEAKAGKGSATLSMAYAGA----IFADACLKGLNGVPDVVECSFVQSTVTEL 289
             +   +V               +  A          +     +  +      +      
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRD 121

Query: 290 PFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
                 V++G++G+EEV+ +  L   E     K    +K   E+
Sbjct: 122 VCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 164

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 94.6 bits (234), Expect = 4e-24
 Identities = 23/171 (13%), Positives = 54/171 (31%), Gaps = 15/171 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +       +V    V+  ++G H    +            +           
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 225 -EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQ 283
            +D++ +    +D   +++E K                        +  V   ++  + +
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 284 STVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKG 334
             V    +      + +NG+ EV+ +  L+D E+         LK+ + + 
Sbjct: 121 RDV----YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARA 166

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 93.7 bits (232), Expect = 5e-24
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN------TRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    ++      +          TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+NPV+     A         +   ++FG
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 94.4 bits (234), Expect = 5e-24
 Identities = 34/165 (20%), Positives = 51/165 (30%), Gaps = 7/165 (4%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQAT----PKANLADEDIKA 229
           T LD  RAK   A K    V  +    V G+   T+ P    A     P   L D +   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 230 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV--QSTVT 287
                          +A   S+  S A A          G      V        +  + 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP 121

Query: 288 ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE 332
           E   ++  V         V GL  +++F ++ +E    EL   +E
Sbjct: 122 EGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEITAQELLDEME 165

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 92.5 bits (229), Expect = 2e-23
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGN 87
           RK+ ++G  G +G  +A  +    +       D       A  +   +  + +  +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 88  DQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                AL D+DVVI   G  +     P   R       + +V+ + + + +   + ++ +
Sbjct: 61  INDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           ISNPV+    +   +F+    +   K+ G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 92.6 bits (229), Expect = 3e-23
 Identities = 33/167 (19%), Positives = 48/167 (28%), Gaps = 8/167 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIK------A 229
           LD  RA +  A K    V+ +    V G+   T+   +  A        + I        
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 230 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTEL 289
               T       +    G  SA  +   A     D  L        +   S     + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 290 PFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVK 336
             F   V       + V GL  +  F QE +     EL      GV+
Sbjct: 123 VIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLNELLEEQN-GVQ 167

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 91.8 bits (227), Expect = 5e-23
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD---------ED 226
           LD  R K + + K NV   +VN  +VG H    +L           L +          +
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAE 62

Query: 227 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTV 286
           ++A+  RT +   E+V   A    A  +     A      LK +     ++E  +  S +
Sbjct: 63  LEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI 122

Query: 287 TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELK 328
               F  + V LG NGVE+V+ L  L+  E+   ++   E K
Sbjct: 123 ----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 159

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.6 bits (219), Expect = 7e-22
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 30  KVAVLGAAGGIGQPLALLM----KLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGY 84
           ++AV+G  G    P  +        +  +  +  YDI      +  D      +      
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA----------- 133
           + +     A+ D+  VI         G   D+   +  G++    + +            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 134 --------KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                   +   NA +   +NP         E  +       +K  G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 88.8 bits (219), Expect = 7e-22
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 13/174 (7%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLA---------DED 226
           LD  R + + A   +V+  +V   V+G H    +  +         +          ++ 
Sbjct: 4   LDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 63

Query: 227 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTV 286
           ++ + + T+  G E+V    G+GSA  + A +    A + L     V         +  +
Sbjct: 64  LEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL 122

Query: 287 TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEKGVKFANA 340
            +  F      +G  G+E V+ L  L++ E++  +K   ++ A + K V    A
Sbjct: 123 KD-MFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMA-LNKAVAALQA 173

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 88.2 bits (218), Expect = 2e-21
 Identities = 38/166 (22%), Positives = 58/166 (34%), Gaps = 12/166 (7%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIK----- 228
           T LD  RAK   A KA V   +V+   + G+   T +P F  A        E IK     
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 229 --ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST- 285
               T   Q  G  +++      S+  S A + A    + +             +     
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 118

Query: 286 --VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKA 329
             + E   F+   R   +G  E+       DF  E ++K + EL A
Sbjct: 119 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 164

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 81.2 bits (200), Expect = 4e-19
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 30/165 (18%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI----ANTPGVAADVGHINTRSEV 81
            + + G  G    P   L LL  L    + +L LYD      +    A DV       ++
Sbjct: 5   SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 63

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV---------------- 125
                 D   +A  D D V+    V +      D+   +  G+V                
Sbjct: 64  EFAATTDP-EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRS 122

Query: 126 ----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166
                ++   + KY P+A +   SNP          +   +   N
Sbjct: 123 IGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILN 167

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 80.9 bits (199), Expect = 6e-19
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 36/172 (20%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIANTP--GVAADVGH---INTRSE 80
           K+A +G  G    P     L+ + + L V  L L DI                 +     
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV--------------- 125
                      +AL+ +D V     V       +D+   +  G++               
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 126 -----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                 D+   + + CP+A +   +NP      +  E   +     ++K+ G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.7 bits (188), Expect = 2e-17
 Identities = 28/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 27  PDRKVAVLGAAGGIGQPLAL---LMKLNPL-VSRLALYDIA--NTPGVAADVGH-INTRS 79
           P  K+ ++GA G     L L   L K   L  S + L DI       +       +    
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI------------------- 120
               +     L   + D+D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 121 -------NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
                        D+   I K  P A     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 12/160 (7%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
             LD  R K         N+      ++G H G ++    S A       + D +A+   
Sbjct: 2   NQLDSQRLKERLYNAGARNI--RRAWIIGEH-GDSMFVAKSLADFDG---EVDWEAVEND 55

Query: 234 TQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFA 293
            +    EV++    KG+     A A      A ++    +         +  +  +    
Sbjct: 56  VRFVAAEVIK---RKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIENV-AVG 111

Query: 294 SKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIEK 333
              +LGKNG E       LSD E E L      L+  +E+
Sbjct: 112 VPAKLGKNGAEVADI--KLSDEEIEKLRNSAKILRERLEE 149

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 30  KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           KVA++G+ G IG   +  +++    +   A+  I       A    +   +  AG  G  
Sbjct: 6   KVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLI 64

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-------- 140
           +L +   D D V           +  + L       ++ +    A   P  +        
Sbjct: 65  KLPE-FADIDFVFDA--TSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEH 121

Query: 141 -----VNMISNPVNSTVPIAAEV 158
                VNM++   N  +  +A +
Sbjct: 122 LGKLNVNMVTYAGNLDIMTSAAL 144

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
               +  +K  V+  +  +G+PLA L+  +         +          +       E 
Sbjct: 23  EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVED 82

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPR---KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            G    D L +   DSDVVI               ++    IN    K+    + +  
Sbjct: 83  LGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKA 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.98
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.98
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.98
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.97
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.96
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.96
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.96
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.96
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.96
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.96
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.96
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.96
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.95
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.95
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.95
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.94
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.94
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.94
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.93
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.91
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.9
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.56
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.82
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.5
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.44
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.43
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.41
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.37
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.37
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.37
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.36
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.32
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.3
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.29
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.27
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.27
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.22
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.19
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.12
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	98.07
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.04
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.04
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	97.99
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	97.97
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.93
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.92
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.9
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.89
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.87
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.86
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.79
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	97.73
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.72
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	97.57
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.56
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.56
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.53
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	97.53
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.52
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.51
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.49
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.47
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.46
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.45
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.39
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.36
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.35
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.35
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.32
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.25
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.25
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.24
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.23
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.19
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.17
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.1
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.04
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.98
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.94
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.88
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.84
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.83
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.77
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	96.76
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.75
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.65
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.6
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.57
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.51
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.45
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.3
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.29
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.27
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.26
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.25
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.25
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.24
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.21
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.18
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.16
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.13
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.12
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.12
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.07
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.05
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.05
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.02
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.97
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.95
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.94
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.9
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.89
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.87
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.87
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.82
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.82
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.81
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.78
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.78
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.73
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.71
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.68
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.62
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.58
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.53
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.52
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.45
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.39
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.38
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.35
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.31
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	95.29
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.26
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.26
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.25
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.22
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.21
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.2
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.2
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.2
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.18
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.15
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.13
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.11
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.1
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.1
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.03
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	94.94
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.87
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.87
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.85
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.83
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.81
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.81
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	94.76
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.71
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.68
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	94.65
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.63
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.61
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.6
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.57
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.51
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.51
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.46
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.35
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.25
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.16
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.13
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.13
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.08
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.0
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.99
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.97
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.94
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.79
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.76
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.69
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.63
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.56
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.5
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.44
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.42
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.34
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	93.33
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.3
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.29
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.28
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.25
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.23
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	93.2
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.18
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.12
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	93.07
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.04
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.01
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.92
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.92
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.82
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.74
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	92.65
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.59
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.42
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.35
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.2
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.19
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	92.16
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.11
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.08
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.95
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.83
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.66
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	91.6
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.59
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.54
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	91.52
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.37
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.24
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	90.98
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.89
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	90.89
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	90.61
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	90.6
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.49
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	90.47
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.42
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	90.33
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.31
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.27
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.24
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.14
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.12
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.09
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.09
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.94
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	89.93
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	89.91
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.43
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.35
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	89.1
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	88.85
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	88.75
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	88.53
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.46
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	88.46
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.44
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	88.4
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.18
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.14
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	88.11
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	88.08
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.7
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	87.57
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.42
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	87.26
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	86.78
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	86.6
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.44
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	86.31
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	86.28
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.11
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	85.93
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.77
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	85.43
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.17
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	84.49
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.26
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	84.21
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	84.02
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.74
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	83.66
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	83.57
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	83.22
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	82.91
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	82.61
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	82.17
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	82.1
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	82.01
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	81.91
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	81.87
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.34
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	81.05
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	81.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.87
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	80.68
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	80.29
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	80.24
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	80.09

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.9e-35  Score=243.43  Aligned_cols=143  Identities=69%  Similarity=1.112  Sum_probs=132.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~~  109 (340)
                      ||+||||+|+||+++++.|+.+++++||+|+|+++.+++++|+.|.............+|++++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            99999977999999999999999999999999998899999999987655555554456778999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       110 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      +||+|.+++..|.++++++++.|.+++|+++++++|||+|+||++++++++++++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999988887777799999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-34  Score=240.28  Aligned_cols=143  Identities=64%  Similarity=0.992  Sum_probs=130.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |||+|||++|+||+++++.|+.+ +.++||+|+|+++ ++++++||.|.........+.++++ +++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~-~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCC-HHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCC-ccccCCCCEEEECCCc
Confidence            79999997799999999988754 7889999999987 6899999999986666666555555 5789999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      |+++|++|.+++..|.+++++++++|.+++|+++++++|||+|+|+++++++++.+|.||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999988888877799999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=1.4e-34  Score=240.38  Aligned_cols=137  Identities=33%  Similarity=0.542  Sum_probs=124.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC---CceEEEEecCCccccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |.||+|||+ |+||+++++.++.+++++||+|+|+++  ++++++||+|...   ...+..   ++| +++++|||+||+
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~---~~~-~~~~~daDvVVi   75 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG---SDD-PEICRDADMVVI   75 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeec---CCC-HHHhhCCcEEEE
Confidence            469999997 999999999999999999999999998  7899999999852   223332   245 478999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      ++|.|+++|++|.+++..|.++++++++.|.+++|++++|++|||+|+||+++   ++.+| ||++||||+
T Consensus        76 taG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~---~~~sg-~p~~rViG~  142 (143)
T d1llda1          76 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA---QKLTG-LPENQIFGS  142 (143)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHHHT-CCTTSEEEC
T ss_pred             ecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH---HHHHC-CChhhccCC
Confidence            99999999999999999999999999999999999999999999999999997   78899 999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=7.3e-34  Score=235.84  Aligned_cols=136  Identities=35%  Similarity=0.600  Sum_probs=124.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|||+ |+||+++++.++.+++++||+|+|+++  ++|+++||+|..    ..+++..   ++|+ ++++|||+||+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~---~~d~-~~~~~adiVvi   75 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GADY-SLLKGSEIIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc---CCCH-HHhccccEEEE
Confidence            79999997 999999999999999999999999998  689999999974    2334543   2564 78999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      ++|.|+++|++|.+++.+|.++++++++.+.++||+++++++|||+|++|+++   ++.+| ||++||||+
T Consensus        76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~k~sg-~p~~rViG~  142 (142)
T d1ojua1          76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGM  142 (142)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSC-CCTTSEEEC
T ss_pred             eccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH---HHHHC-CChhcEecC
Confidence            99999999999999999999999999999999999999999999999999987   78898 999999996

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.2e-33  Score=234.27  Aligned_cols=137  Identities=32%  Similarity=0.571  Sum_probs=123.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |||+|||| |+||+++++.++..++++||+|+|+++  ++++++|+.|... .......+  +| +++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccC--Cc-HHHhcCCCEEEEecc
Confidence            79999997 999999999999999999999999987  6899999998652 22333332  45 578999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      .|+++|++|.+++.+|.++++++++.|.++||+++++++|||+|+||+++   ++.+| ||++||||.
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~---~k~sg-~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF---LKESG-MDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH---HHHHC-cCccceeCc
Confidence            99999999999999999999999999999999999999999999999987   78899 999999995

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=2.1e-33  Score=233.10  Aligned_cols=137  Identities=33%  Similarity=0.479  Sum_probs=117.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .||+|||| |+||+++++.++..++++||+|+|+++  ++++++||.|+.. .+....++  .| +++++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEee--Cc-HHHhCCCceEEEecc
Confidence            49999998 999999999999999999999999987  6899999999753 33444432  34 588999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      .++++|++|.+++.+|++++++++++|.+++|+++++++|||+|+||+++   ++.+| ||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~---~k~sg-~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI---QKWSG-LPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH---HHHHC-CCccceecC
Confidence            99999999999999999999999999999999999999999999999987   88999 999999997

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.3e-33  Score=233.98  Aligned_cols=137  Identities=32%  Similarity=0.426  Sum_probs=121.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC----cHHHHHHHhcCC-CCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~----~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      .||+||||+|+||+++++.++++++++||+|+|++.    ++++++||.|.. +.......+  .| +++++|||+||++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~--~~-~~~~~~aDiVvit   77 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEee--CC-HHHhhhcCEEEEe
Confidence            399999966999999999999999999999999864    568999999853 222333332  34 4779999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      ||.|+++||+|.+++..|+++++++++.|.++||+++++++|||+|+||+++   ++.+| ||++||||
T Consensus        78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~---~k~sg-~~~~rViG  142 (142)
T d1o6za1          78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL---YEAGD-RSREQVIG  142 (142)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH---HHHSS-SCGGGEEE
T ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHH---HHHHC-cCcccccC
Confidence            9999999999999999999999999999999999999999999999999987   78899 99999998

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=237.50  Aligned_cols=139  Identities=27%  Similarity=0.472  Sum_probs=125.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      .+..||+|||+ |+||+++++.|+..++++||+|+|+++  ++|+++||+|...  .......  ..| +++++|||+||
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~--~~d-~~~~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVA--DKD-YSVTANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEE--CSS-GGGGTTCSEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEe--ccc-hhhcccccEEE
Confidence            45679999997 999999999999999999999999987  7899999999752  2222222  355 58899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      +++|.|+++|++|.+++..|.++++++++.|.+++|++++|++|||+|+||+++   ++.+| ||++||||
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~---~k~sg-lp~~rViG  160 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT---WKLSG-LPKHRVIG  160 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH---HHHHC-cCcccccC
Confidence            999999999999999999999999999999999999999999999999999997   78899 99999998

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=6.8e-34  Score=237.87  Aligned_cols=138  Identities=25%  Similarity=0.377  Sum_probs=125.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ..||+|||| |+||+++++.|++.++++||+|+|+++  ++++++||+|...  ...+...+  .| +++++|||+||++
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~d-~~~l~daDvvvit   81 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVIC   81 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEEC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEE--CC-HHHhccceeEEEe
Confidence            469999997 999999999999999999999999987  6899999999753  22333332  45 5889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      +|.|+++|++|.+++.+|+++++++++.|.++||+++++++|||+|++|+++   ++.+| ||++||||+
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~---~k~sg-~p~~rViG~  147 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT---WKFSG-LPHERVIGS  147 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHT-CCGGGEEEC
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH---HHHHC-cChhheecC
Confidence            9999999999999999999999999999999999999999999999999997   78999 999999997

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=6.4e-33  Score=230.48  Aligned_cols=136  Identities=36%  Similarity=0.618  Sum_probs=123.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      |||+|||| |+||+++++.|+..++++||+|+|+++  .++.++|+.|..    ...++..   ++| +++++|||+||+
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~---~~~-~~~~~dadvvvi   75 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SND-YADTANSDIVII   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe---cCC-HHHhcCCeEEEE
Confidence            79999997 999999999999999999999999998  678889998875    2344543   245 588999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      ++|.|+++|++|.+++.+|+++++++++.|.++||++|++++|||+|++|+++   ++.+| ||++||||+
T Consensus        76 tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~---~~~sg-~p~~rviG~  142 (142)
T d1guza1          76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSG-LPKERVIGM  142 (142)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH---HHHHC-SCGGGEEEE
T ss_pred             EEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH---HHHhC-CChHhEeeC
Confidence            99999999999999999999999999999999999999999999999999987   78898 999999996

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.3e-32  Score=228.83  Aligned_cols=137  Identities=34%  Similarity=0.563  Sum_probs=120.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC----cHHHHHHHhcCC--CC--ceEEEEecCCccccccCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHIN--TR--SEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~----~~~~~~dl~~~~--~~--~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      |||+||||+|+||+++++.|+++++++||+|+|+++    ++++++||.|+.  ..  .++.... ++| +++++|||+|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~-~~d-~~~l~~aDvV   78 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES-DEN-LRIIDESDVV   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE-TTC-GGGGTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCC-cch-HHHhccceEE
Confidence            799999977999999999999999999999999986    468899999853  22  2333332 235 5889999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      |+|||.|+++|++|.+++..|.++++++++.+.++||++++ ++|||+|+||+++   ++.+| ||++||||
T Consensus        79 VitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~---~k~sg-~p~~rViG  145 (145)
T d1hyea1          79 IITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA---LVDSK-FERNQVFG  145 (145)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH---HHHHC-CCTTSEEE
T ss_pred             EEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999999999998865 5899999999987   78899 99999998

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.98  E-value=1.2e-33  Score=235.60  Aligned_cols=137  Identities=20%  Similarity=0.308  Sum_probs=116.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +||+|||+ |+||+++++.|++++.++||+|+|+++  ++++++||+|...  .......+  +| +++++|||+||+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~--~d-~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--ND-WAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SC-GGGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceec--cC-HHHhccccEEEEec
Confidence            59999997 999999999999999999999999988  6899999998752  22333332  45 47899999999999


Q ss_pred             CCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          105 GVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       105 g~~~----~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |.|+    ++|++|.+++..|+++++++++.|+++||++++|++|||+|+||+++   ++.+| ||++||||.
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~k~sg-~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF---QHVTG-FPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH---HHHhC-CCccceeCc
Confidence            9887    67899999999999999999999999999999999999999999998   88999 999999995

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=5.9e-33  Score=234.09  Aligned_cols=139  Identities=27%  Similarity=0.431  Sum_probs=124.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      ++..||+|||+ |+||+++++.|+..++++||+|+|+++  ++|+++||+|+..  .......  .+| +++++|||+||
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~--~~d-~~~~~~adivv   92 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF--GKD-YNVSANSKLVI   92 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEE--ESS-GGGGTTEEEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEe--ccc-hhhhccccEEE
Confidence            45569999997 999999999999999999999999987  6899999999863  1122222  245 47899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      +++|.|+++|++|.+++..|+++++++++.|.+++|+++++++|||+|+||+++   ++.+| ||++||||
T Consensus        93 itag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~---~k~sg-~p~~rV~G  159 (159)
T d2ldxa1          93 ITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV---WKISG-FPVGRVIG  159 (159)
T ss_dssp             ECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH---HHHHC-SCTTTEEE
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH---HHHHC-cCcccccC
Confidence            999999999999999999999999999999999999999999999999999997   88999 99999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.98  E-value=1.2e-32  Score=229.57  Aligned_cols=138  Identities=26%  Similarity=0.471  Sum_probs=114.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+||+|||+ |+||+++++.|++.++++||+|+|+++  ++++++||+|... .......+  +|+ ++++|||+||+++
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~--~d~-~~~~~adivvita   80 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GEY-SDCKDADLVVITA   80 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEee--ccH-HHhccccEEEEec
Confidence            479999997 999999999999999999999999998  7899999999752 12222232  464 7799999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |.|+++|++|.+++..|.++++++++.|.++||+++++++|||+|++|+++   ++.+| ||++||||+
T Consensus        81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~---~k~sg-~p~~rViG~  145 (146)
T d1ez4a1          81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT---WKFSG-FPKERVIGS  145 (146)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH---HHHHC-cCccceecC
Confidence            999999999999999999999999999999999999999999999999987   78899 999999997

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=1.2e-31  Score=229.17  Aligned_cols=167  Identities=53%  Similarity=0.840  Sum_probs=146.1

Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCcc
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  252 (340)
                      +|.||++||++++|+++|++|++|+++|+|+||+++++|+||++.++++++.++++++.+.+++++++|++.+.+.+++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999776889999999888889999999999999999999999876667888


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 019519          253 LSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE  332 (340)
Q Consensus       253 ~s~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  332 (340)
                      ++++.++++++.+++.+..+...+.++++......+++|||+||+||++|+++++++++|+++|+++|++|+++|++.++
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~~I~  160 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK  160 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999876544444444444322235689999999999999999999867999999999999999999999


Q ss_pred             HHhhhhh
Q 019519          333 KGVKFAN  339 (340)
Q Consensus       333 ~~~~~~~  339 (340)
                      ++++|++
T Consensus       161 ~g~~fi~  167 (169)
T d1mlda2         161 KGEEFVK  167 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999986

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=3.8e-32  Score=227.28  Aligned_cols=136  Identities=34%  Similarity=0.625  Sum_probs=121.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      ..||+|||+ |.||+++++.++++++ +||+|+|+++  ++++++|+.|..    ....+...   .+ +++++|||+||
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~---~~-~~~~~~advvv   76 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS---NT-YDDLAGADVVI   76 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE---CC-GGGGTTCSEEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEec---cc-ccccCCCcEEE
Confidence            469999997 9999999998888875 7999999988  789999999974    23344432   33 58899999999


Q ss_pred             EcCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          102 IPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       102 ~~ag~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      +++|.++++|++     |.+++..|.++++++++.|.++||+++++++|||+|+||+++   ++.+| ||++||||+
T Consensus        77 itag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~~~sg-~p~~rViG~  149 (150)
T d1t2da1          77 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL---HQHSG-VPKNKIIGL  149 (150)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             EecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH---HHHHC-CCchheecc
Confidence            999999999876     999999999999999999999999999999999999999997   78899 999999997

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.2e-31  Score=223.71  Aligned_cols=167  Identities=49%  Similarity=0.728  Sum_probs=145.3

Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCcc
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  252 (340)
                      +|.||++||++++|+++|++|++|+++|+|+||+.+++|++|++. +..++..+++++.+.+++++.++++.+.+++++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~-~~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVP-GVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCT-TCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeeccccc-CCCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            378999999999999999999999999999999866666656554 3467888899999999999999999887889999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 019519          253 LSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE  332 (340)
Q Consensus       253 ~s~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  332 (340)
                      +|+|.++++++.+|+.+.++...+..+++.....++++|||+||++|++|+++++++++|+++|+++|++|+++|++.++
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~~I~  159 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIA  159 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987765544443344444446799999999999999999999867999999999999999999999


Q ss_pred             HHhhhhhC
Q 019519          333 KGVKFANA  340 (340)
Q Consensus       333 ~~~~~~~~  340 (340)
                      ++++|+++
T Consensus       160 ~~~~fi~~  167 (167)
T d2cmda2         160 LGQEFVNK  167 (167)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999985

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1.5e-31  Score=224.87  Aligned_cols=138  Identities=31%  Similarity=0.625  Sum_probs=123.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +++||+|||| |.||+++++.|++.++ .||+|+|+++  ++++++||.|..    ....+..   +++++++++|||+|
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~adiV   80 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCV   80 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEec---cCchhhhhcCCCeE
Confidence            4589999998 9999999999988886 5999999998  689999999864    2333443   25667899999999


Q ss_pred             EEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519          101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       101 i~~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |+++|.++++|+     +|.+++..|.++++++++.|.++||+++++++|||+|++|+++   ++.+| ||++||||+
T Consensus        81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~---~~~sg-~p~~rViG~  154 (154)
T d1pzga1          81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM---CEASG-VPTNMICGM  154 (154)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH---HHHhC-cChhcEecC
Confidence            999999999985     8999999999999999999999999999999999999999997   78899 999999996

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=4.3e-31  Score=219.23  Aligned_cols=134  Identities=31%  Similarity=0.596  Sum_probs=112.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      +||+|||+ |.||+++|+.|+++++ .|++|+|+++  +.+.++|+.|..    ...++...   +|+ ++++|||+||+
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l-~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~---~d~-~~~~~advvvi   75 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT---NNY-ADTANSDVIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE---SCG-GGGTTCSEEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCc-ceEEEEeeccccchhHHHHhhccccccCCCCEEEec---CcH-HHhcCCCEEEE
Confidence            59999997 9999999999998886 4899999987  689999999985    23345542   564 77999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      ++|.|+++|++|.+++..|.++++++++.|.++||+++++++|||+|+||+++   ++.+| ||++||||
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~---~~~sg-lp~~rViG  141 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA---AEVSG-FPKERVIG  141 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999999999999999999999999997   78899 99999998

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=1.3e-30  Score=224.68  Aligned_cols=162  Identities=24%  Similarity=0.255  Sum_probs=139.5

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEE-EecCCCccccccccCCCCC-C----------CChHHHHHHHHHHhcchhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVV-GGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEV  241 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~-G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i  241 (340)
                      |.||++||++++|+++|++|++|+++++ |+||+ ++||+||++++++ +          ++....+++.+.+++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6799999999999999999999988655 99999 9999999999864 2          12233568888999999999


Q ss_pred             hhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeC-CC--CCccEEEEeEEEcCCceEEEecCCCCCHHHH
Q 019519          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQ  317 (340)
Q Consensus       242 ~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~  317 (340)
                      ++.+  +++++|++|.++++++++|+++.++. .+++++ +.+| +|  ++++|||+||++|++||+++.++ +|+++|+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~-~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l-~L~~~E~  155 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEG-EFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSR  155 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTT-CCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCC-CCCHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccC-CceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCC-CCCHHHH
Confidence            9864  46788999999999999999987654 345554 4566 46  79999999999999999999998 8999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhC
Q 019519          318 EGLEKLKPELKASIEKGVKFANA  340 (340)
Q Consensus       318 ~~l~~s~~~l~~~~~~~~~~~~~  340 (340)
                      ++|++|+++|+++++.+++++++
T Consensus       156 ~~l~~Sa~~L~~~~~~~~~~l~~  178 (179)
T d5mdha2         156 EKMDLTAKELAEEKETAFEFLSS  178 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999873

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=1.3e-30  Score=217.63  Aligned_cols=145  Identities=24%  Similarity=0.287  Sum_probs=127.8

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCC-ceeEEEecCCCccccccccCCCCCCCChHHHHHHHHHHhcchhhhhhhhcCCCCcc
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  252 (340)
                      |.|||+||++.|++...   .++ +++|+|+||+ ++||+||.+++++..   +++++.+.+++++++|++.   ||+|+
T Consensus         2 t~LDsaR~r~~l~~~~~---~~v~~a~ViGeHGd-s~vp~~S~~~i~g~~---~~~~i~~~v~~~g~eIi~~---kG~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAGA---RNIRRAWIIGEHGD-SMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIKR---KGATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC---BSCCCCCEEBCSST-TCEECGGGCCCBSCC---CHHHHHHHHHTTHHHHHHH---HSSCC
T ss_pred             CccHHHHHHHHHHccCC---CCcceeEEEecCCC-ccccccccccccCcc---chhHhHHHHHHHHHHhhhh---cccee
Confidence            57999999999987654   455 8999999998 999999999986543   4568889999999999984   58999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 019519          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKAS  330 (340)
Q Consensus       253 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~  330 (340)
                      ||+|.++++++++|+.|.+   .++|++ +++|+| .+|+|+|+||+||++|++ ++++ +|+++|+++|++|++.||+.
T Consensus        72 ~gia~a~~~iv~aIl~d~~---~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i~~l-~L~~~E~~~l~~Sa~~ik~~  146 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRER  146 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCC---CceeeeEEeccccCCCCEEEEeEEEECCCceE-EEcC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   588997 579998 679999999999999985 7888 99999999999999999998


Q ss_pred             HHH
Q 019519          331 IEK  333 (340)
Q Consensus       331 ~~~  333 (340)
                      ++.
T Consensus       147 i~~  149 (152)
T d1ojua2         147 LEE  149 (152)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            864

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=2e-30  Score=220.24  Aligned_cols=153  Identities=27%  Similarity=0.436  Sum_probs=138.3

Q ss_pred             chhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC-----CChHHHHHHHHHHhcchhhhhhhhcCCC
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN-----LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~-----~~~~~~~~l~~~v~~~~~~i~~~~~~kg  249 (340)
                      +||++||++++|+++|+++++|+++|||+||+ +++|+||++++++.     ++++.++++.+++++++.+|++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            59999999999999999999999999999998 89999999999652     566678899999999999999864 789


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHH
Q 019519          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL  327 (340)
Q Consensus       250 ~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l  327 (340)
                      +++|++|.++.+++++++.+.+   .++|++ +++|.| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l-~Ls~~E~~~l~~sa~~l  156 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIV  156 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHheeccCC---CEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999998764   467775 568887 67999999999999999999998 89999999999999999


Q ss_pred             HHHHHH
Q 019519          328 KASIEK  333 (340)
Q Consensus       328 ~~~~~~  333 (340)
                      ++.++.
T Consensus       157 ~~~i~~  162 (163)
T d1guza2         157 DENCKM  162 (163)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            988763

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=2.7e-30  Score=220.91  Aligned_cols=158  Identities=20%  Similarity=0.334  Sum_probs=142.4

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC----------CCChHHHHHHHHHHhcchhhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVE  243 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~  243 (340)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||++++++          .+..+++.++.+.++.++.++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            679999999999999999999999999999998 9999999999864          24566778889999999999987


Q ss_pred             hhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHH
Q 019519          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (340)
Q Consensus       244 ~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~  321 (340)
                      .   +|++.|++|.++.+++++++.+..   .+++++ +++++| .+++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        80 ~---k~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l-~Ls~~E~~~l~  152 (171)
T d1ez4a2          80 L---KGATFYGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQ  152 (171)
T ss_dssp             H---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             h---hhhHhHHHHHHHHHHHHHHhccCC---ceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            4   589999999999999999999864   466665 578888 78999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 019519          322 KLKPELKASIEKGVKFAN  339 (340)
Q Consensus       322 ~s~~~l~~~~~~~~~~~~  339 (340)
                      +|+++|+++++++++.++
T Consensus       153 ~s~~~l~~~i~~~l~~l~  170 (171)
T d1ez4a2         153 DSAATLKKVLNDGLAELE  170 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998775

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=2.7e-30  Score=219.56  Aligned_cols=154  Identities=31%  Similarity=0.446  Sum_probs=139.0

Q ss_pred             chhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC-----CChHHHHHHHHHHhcchhhhhhhhcCCC
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN-----LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~-----~~~~~~~~l~~~v~~~~~~i~~~~~~kg  249 (340)
                      .||++||++++|+++|++|++|+++|||+||+ +++|+||.+++++.     +++..++++.+.+++++++|++.+ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            59999999999999999999999999999998 89999999998652     455668899999999999998865 789


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHH
Q 019519          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPEL  327 (340)
Q Consensus       250 ~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l  327 (340)
                      +++|++|.++.+++++|+.+.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|+++|
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  156 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAV  156 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhCCCC---ceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999864   467775 578888 67899999999999999999998 99999999999999999


Q ss_pred             HHHHHHH
Q 019519          328 KASIEKG  334 (340)
Q Consensus       328 ~~~~~~~  334 (340)
                      +++++..
T Consensus       157 k~~i~~l  163 (164)
T d1uxja2         157 RATLDTL  163 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999763

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.97  E-value=3.7e-30  Score=219.94  Aligned_cols=152  Identities=22%  Similarity=0.385  Sum_probs=135.6

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-------------CCChHHHHHHHHHHhcchhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-------------NLADEDIKALTKRTQDGGTE  240 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-------------~~~~~~~~~l~~~v~~~~~~  240 (340)
                      |.||++||++++|+++|+++++|+++|||+||+ ++||+||++++++             .++...++++.+.++.++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            679999999999999999999999999999999 9999999998853             13445678999999999999


Q ss_pred             hhhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHH
Q 019519          241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (340)
Q Consensus       241 i~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~  318 (340)
                      |++   +||++.|++|.++++++++++.+..   .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|++
T Consensus        80 i~~---~kg~t~~~~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l-~L~~~E~~  152 (170)
T d1llda2          80 IIN---GKGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELA  152 (170)
T ss_dssp             HHT---SCCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHH
T ss_pred             HHh---hhccchhhhHHHHHHHHHHHHcCCC---ceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecC-CCCHHHHH
Confidence            998   5689999999999999999998864   466665 578888 78999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 019519          319 GLEKLKPELKASIEK  333 (340)
Q Consensus       319 ~l~~s~~~l~~~~~~  333 (340)
                      +|++|++.||+.+++
T Consensus       153 ~l~~sa~~lk~~~~~  167 (170)
T d1llda2         153 ALKRSAETLKETAAQ  167 (170)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987743

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=3.9e-30  Score=220.32  Aligned_cols=143  Identities=26%  Similarity=0.307  Sum_probs=123.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCc-----ceEEEEeCCC----cHHHHHHHhcCCCCceEEEEecCCccccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~-----~el~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (340)
                      ++.||+|+||+|+||+++++.|++++++     .+|+|+|+++    +++.++|++|+..+. +.....+++.+++++||
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~~~~~~~~~~~a  101 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LREVSIGIDPYEVFEDV  101 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccc-ccCccccccchhhccCC
Confidence            5679999998899999999999987654     3899999987    478899999987542 22222235668999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |+||+++|.||++||+|.|++..|.+|++++++.|.+||| +++|+++|||+|++|+++   +++++++|++||+||
T Consensus       102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999997 899999999999999987   777545999999986

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.96  E-value=1.1e-29  Score=217.66  Aligned_cols=159  Identities=24%  Similarity=0.363  Sum_probs=135.2

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---------CChHHHHHHHHHHhcchhhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVE  243 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~  243 (340)
                      |+||++||++++|+++|++|++|+++|||+||+ +++|+||++++++ +         ....+..+.....+.++.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            789999999999999999999999999999998 9999999999864 1         2334456666666777777776


Q ss_pred             hhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHH
Q 019519          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (340)
Q Consensus       244 ~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~  321 (340)
                      .+ ++|+++|++|.++++++++++.+.+   .++++++ .+|.| .+++|||+||+||++|++.++++ +|+++|+++|+
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~~---~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l-~l~~~E~~~l~  155 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQ  155 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccCC---ceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            54 7899999999999999999998864   4677764 67888 56799999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 019519          322 KLKPELKASIEKGVKFAN  339 (340)
Q Consensus       322 ~s~~~l~~~~~~~~~~~~  339 (340)
                      +|+++|+++. +.++.++
T Consensus       156 ~s~~~l~~~~-~~v~~l~  172 (174)
T d1pzga2         156 KSVDDVMALN-KAVAALQ  172 (174)
T ss_dssp             HHHHHHHHHH-HHHHHHC
T ss_pred             HHHHHHHHHH-HHHHhcc
Confidence            9999998755 4555554

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.96  E-value=1.6e-29  Score=218.87  Aligned_cols=160  Identities=23%  Similarity=0.184  Sum_probs=135.3

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCce-eEEEecCCCccccccccCCCCCC-----CChHH--HHHHHHHHhcchhhhhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKAN-----LADED--IKALTKRTQDGGTEVVEAK  245 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~~-----~~~~~--~~~l~~~v~~~~~~i~~~~  245 (340)
                      |.||++||+++||+++|+++++|+. +|||+||+ ++||+||++++++.     ..++.  .+++.+.++++++++++.+
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            6799999999999999999999975 58899999 99999999998641     22222  4789999999999999974


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCC-C--CCccEEEEeEEEcCCceEEEec-CCCCCHHHHHHH
Q 019519          246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGL  320 (340)
Q Consensus       246 ~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~-~--~~~~~~svP~~ig~~Gv~~i~~-~~~L~~~E~~~l  320 (340)
                        ++++++|+|.|+++++++|+.+.+.. .+++++ +++|+ |  ++|+|||+||++|++|+++++. + +|+++|+++|
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~~-~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l-~L~~~e~~~l  155 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPEG-DWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDV-SNDDFLWERI  155 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCTT-CCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCC-CCCHHHHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCCC-ceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCC-CCCHHHHHHH
Confidence              35667789999999999999988644 356665 46775 7  6899999999999999999875 6 9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 019519          321 EKLKPELKASIEKGVKFA  338 (340)
Q Consensus       321 ~~s~~~l~~~~~~~~~~~  338 (340)
                      ++|+++|+++.+.....+
T Consensus       156 ~~S~~eL~~e~~~v~~Ll  173 (188)
T d7mdha2         156 KKSEAELLAEKKCVAHLT  173 (188)
T ss_dssp             HHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999998877665444

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=3.6e-30  Score=216.60  Aligned_cols=143  Identities=28%  Similarity=0.366  Sum_probs=119.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCc-----ceEEEEeCCC----cHHHHHHHhcCCCCceEEEEecCCccccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~-----~el~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (340)
                      +|+||+||||+|+||+++++.|++++++     .+|+|+|+++    +++..+|+.++.... .......++.+++++||
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccc-ccccccCcccccccCCc
Confidence            5799999998899999999999876653     4899999987    345556667765432 22222234557999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      |+||+++|.|+++|++|.+++..|.++++++++.|.++||+ +++|++|||+|+||+++   +++++++|++||+|+
T Consensus        81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~---~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA---SKSAPSIPKENFSCL  154 (154)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH---HHHcCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999985 56888999999999987   788833999999986

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.9e-29  Score=215.80  Aligned_cols=157  Identities=25%  Similarity=0.352  Sum_probs=138.7

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-----------CCChHHHHHHHHHHhcchhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~  242 (340)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||++++++           .++.+.++++.+.++.++++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            679999999999999999999999999999998 9999999998853           2455667889999999999998


Q ss_pred             hhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHH
Q 019519          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (340)
Q Consensus       243 ~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l  320 (340)
                      +.   ++++.|++|.++++++.+++.+.+   .+++++ +.+|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        81 ~~---~~~~~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~l-~Ls~~E~~~l  153 (172)
T d1a5za2          81 ER---KGATHYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAF  153 (172)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             ec---cccchhhHHHHHHHHHHHHHhhcc---cceeeecccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHH
Confidence            84   588999999999999999998753   466665 567877 77999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 019519          321 EKLKPELKASIEKGVKFA  338 (340)
Q Consensus       321 ~~s~~~l~~~~~~~~~~~  338 (340)
                      ++|++.||+.+++..+..
T Consensus       154 ~~sa~~lk~~i~~l~~~~  171 (172)
T d1a5za2         154 RKSASILKNAINEITAEE  171 (172)
T ss_dssp             HHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            999999999998866543

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.96  E-value=8.8e-30  Score=217.41  Aligned_cols=153  Identities=24%  Similarity=0.353  Sum_probs=134.4

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C-----------CChHHHHHHHHHHhcchhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEV  241 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i  241 (340)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||+.++++ +           ++.++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            679999999999999999999999999999999 9999999998853 1           22334578888999989988


Q ss_pred             hhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHH
Q 019519          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEG  319 (340)
Q Consensus       242 ~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~  319 (340)
                      ++   +++++.|++|.++++++++++.+.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++
T Consensus        80 ~~---~~~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~  152 (169)
T d1y6ja2          80 IK---NKGATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEA  152 (169)
T ss_dssp             HH---HTSCCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHH
T ss_pred             hh---hhhhhhhHHHHHHHHHHHHhccCCC---CceeeeeeeccccCCcccceeeeeEEcCCcEEEEecC-CCCHHHHHH
Confidence            88   4689999999999999999999864   477775 578988 56999999999999999999998 899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 019519          320 LEKLKPELKASIEKG  334 (340)
Q Consensus       320 l~~s~~~l~~~~~~~  334 (340)
                      |++|++.|++++++.
T Consensus       153 l~~s~~~lk~~~~~v  167 (169)
T d1y6ja2         153 LRFSAEQVKKVLNEV  167 (169)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999864

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2.3e-29  Score=211.67  Aligned_cols=141  Identities=30%  Similarity=0.487  Sum_probs=118.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcce-----EEEEeCCC----cHHHHHHHhcCCCCceEEEEecCCccccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~e-----l~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (340)
                      +++||+||||+|+||+++++.|++++++++     +.|+|.+.    ..+.++|+.+.... .......+++.+++++||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP-LLAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccc-cccccccCCchhhhcccc
Confidence            578999999889999999999999887654     56666654    46778888887643 233222234457999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHH-hCCCCCCceEe
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKK-AGTYNEKKLFG  172 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~-sg~~~~~kviG  172 (340)
                      |+||+++|.|+++|++|.+++..|.++++++++.|.++|| +++++++|||+|++|+++   +++ +| ||++|||.
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg-~p~~rvia  154 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPG-LNPRNFTA  154 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTT-SCGGGEEE
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCC-CcHHhccC
Confidence            9999999999999999999999999999999999999995 899999999999999987   676 56 99999985

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=5.4e-29  Score=211.68  Aligned_cols=152  Identities=29%  Similarity=0.357  Sum_probs=135.3

Q ss_pred             chhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC----------CCChHHHHHHHHHHhcchhhhhhh
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~  244 (340)
                      .||++|+++++|+++|++|++|+++|||+||+ +++|+||+.++++          ...+++++++.+.+++++.++++ 
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   79 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVN-   79 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHH-
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhh-
Confidence            58999999999999999999999999999998 9999999998753          24456678888999999999988 


Q ss_pred             hcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHH
Q 019519          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (340)
Q Consensus       245 ~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~  322 (340)
                        +++++.|++|.+++.++++++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++
T Consensus        80 --~~~~~~~a~a~a~~~~~~~i~~~~~---~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l-~L~~~E~~~L~~  153 (165)
T d1t2da2          80 --LHASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  153 (165)
T ss_dssp             --HTSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             --hccceeechhHHHHHHHHHHhhccc---cceeeeeccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHH
Confidence              4689999999999999999999864   466775 689988 77999999999999999999998 899999999999


Q ss_pred             HHHHHHHHHHHH
Q 019519          323 LKPELKASIEKG  334 (340)
Q Consensus       323 s~~~l~~~~~~~  334 (340)
                      |+++|++..+.|
T Consensus       154 s~~~lk~~~~~A  165 (165)
T d1t2da2         154 AIAETKRMKALA  165 (165)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999887653

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.96  E-value=6.7e-29  Score=210.58  Aligned_cols=155  Identities=20%  Similarity=0.239  Sum_probs=133.9

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C---C---ChHHHHHHHHHHhcchhhhhhhhc
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L---ADEDIKALTKRTQDGGTEVVEAKA  246 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---~---~~~~~~~l~~~v~~~~~~i~~~~~  246 (340)
                      |.||++||++++|+++|++|++|+++|||+||+ ++||+||++++++ +   +   .+..++++.+.++++++++++.  
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~--   78 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG--   78 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHH--
Confidence            579999999999999999999999999999998 9999999999864 1   1   1234679999999999999884  


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCCCCCCcEEEeeeeeCCCCCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHH
Q 019519          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPE  326 (340)
Q Consensus       247 ~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  326 (340)
                       ||+++|++|.++.+++.++..+..   .+++++...+  ++++|||+||++|++|+++++++ +|+++|+++|++|+++
T Consensus        79 -kg~~~~~~a~~~~~~~~~~~~~~~---~~~~~s~~~~--~~~~~~s~Pv~ig~~Gv~~v~~l-~Ls~~E~~~l~~s~~~  151 (163)
T d1hyha2          79 -KGYTSYGVATSAIRIAKAVMADAH---AELVVSNRRD--DMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDY  151 (163)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECT--TTCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             -HHhHHHhHHHHhhHHHHHhcCCcc---ceeeeceecC--CcceEEEeEEEEcCCeEEEEecC-CCCHHHHHHHHHHHHH
Confidence             589999999999999999998864   3555543222  45899999999999999999998 8999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 019519          327 LKASIEKGVKFA  338 (340)
Q Consensus       327 l~~~~~~~~~~~  338 (340)
                      |++++++.++.|
T Consensus       152 l~~~~~~~~~~l  163 (163)
T d1hyha2         152 IQQRFDEIVDTL  163 (163)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhC
Confidence            999999988754

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=1.1e-28  Score=208.45  Aligned_cols=155  Identities=26%  Similarity=0.404  Sum_probs=136.7

Q ss_pred             EeccchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC---CCChHHHHHHHHHHhcchhhhhhhhcC
Q 019519          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA---NLADEDIKALTKRTQDGGTEVVEAKAG  247 (340)
Q Consensus       171 iG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~---~~~~~~~~~l~~~v~~~~~~i~~~~~~  247 (340)
                      || |+||++||++++|+++|+++++|+++|||+||+ +++|+||++.+++   .+..++++++.+.++..+.++++   +
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---R   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHH---h
Confidence            46 899999999999999999999999999999999 8999999998864   25566778888899998988877   4


Q ss_pred             CCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHH
Q 019519          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKP  325 (340)
Q Consensus       248 kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~  325 (340)
                      ++++.+++|.++.+++.+++.+..   .+++++ ++.++| ++++|||+||++|++|+++++++ +|+++|+++|++|++
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~l-~l~~~E~~~L~~s~~  151 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAE  151 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhhHhhhHhhhhccc---cceeecccccccccccCceeeeeeEEcCCCEEEEeCC-CCCHHHHHHHHHHHH
Confidence            688999999999999999998764   245554 567777 78999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHH
Q 019519          326 ELKASIEKG  334 (340)
Q Consensus       326 ~l~~~~~~~  334 (340)
                      .|++++++.
T Consensus       152 ~L~~~~~~i  160 (161)
T d1o6za2         152 KLSDQYDKI  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998763

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=3.4e-29  Score=213.40  Aligned_cols=155  Identities=21%  Similarity=0.302  Sum_probs=129.0

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC----CC---hHHHHHHHHHHhcchhhhhhhhc
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----LA---DEDIKALTKRTQDGGTEVVEAKA  246 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~----~~---~~~~~~l~~~v~~~~~~i~~~~~  246 (340)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++++.    +.   ....+++.+.++++++.+++   
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   78 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---   78 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHH---
Confidence            689999999999999999999999999999998 99999999988641    11   12356788888888888877   


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCCCCCCcEEEe-eeeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHH
Q 019519          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVEC-SFVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (340)
Q Consensus       247 ~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~-~~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s  323 (340)
                      .++++.|++|.+++.++++++.+.+   .++++ +++.++|  ++|+|||+||++|++|+++++++ +|+++|+++|++|
T Consensus        79 ~k~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~S  154 (168)
T d1hyea2          79 LKGGSEFGPAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKS  154 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             hccCccccchhhhhHHHHhhhccCC---CeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecC-CCCHHHHHHHHHH
Confidence            4578889999999999999998764   35555 4567765  78999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 019519          324 KPELKASIEKGVK  336 (340)
Q Consensus       324 ~~~l~~~~~~~~~  336 (340)
                      ++.|++.+++..+
T Consensus       155 a~~lk~~~~~~k~  167 (168)
T d1hyea2         155 AEIIKKYCEEVKN  167 (168)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.2e-28  Score=209.91  Aligned_cols=154  Identities=23%  Similarity=0.350  Sum_probs=134.0

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----------CChHHHHHHHHHHhcchhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVV  242 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~  242 (340)
                      |.||++||+.++|+++|+++++|+++|||+||+ +++|+||++++++ +          ......+++.+.++..+.++.
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            679999999999999999999999999999998 9999999998853 1          112235678888888888887


Q ss_pred             hhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHH
Q 019519          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (340)
Q Consensus       243 ~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l  320 (340)
                      ..   ++++.|+++.++.+++.+++.+.+   .+++++ ++.++| ++++|||+||++|++|++.++++ +|+++|+++|
T Consensus        80 ~~---~~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~l-~Ls~~E~~~L  152 (168)
T d1ldna2          80 EK---KGATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRF  152 (168)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             Hh---hccccchHHHHHhhHHHhhhcccc---eeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeCC-CCCHHHHHHH
Confidence            74   578999999999999999998753   466665 467888 78999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 019519          321 EKLKPELKASIEKGV  335 (340)
Q Consensus       321 ~~s~~~l~~~~~~~~  335 (340)
                      ++|+++|++.+++|+
T Consensus       153 ~~s~~~lk~~i~~a~  167 (168)
T d1ldna2         153 HHSAATLKSVLARAF  167 (168)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999875

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=211.03  Aligned_cols=151  Identities=21%  Similarity=0.243  Sum_probs=132.8

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCCC------------CChHHHHHHHHHHhcchhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEV  241 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~------------~~~~~~~~l~~~v~~~~~~i  241 (340)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++++.            .+.+.++++.+.++.++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            679999999999999999999999999999998 89999999988631            22334678888999999998


Q ss_pred             hhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHH
Q 019519          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (340)
Q Consensus       242 ~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~  318 (340)
                      ++.   +++++|++|.++++++++++.+.+   .++|+++ ++|+|  ++++|||+||++|++|++.++++ +|+++|++
T Consensus        82 ~~~---~~~s~~a~a~~~~~~~~~~~~~~~---~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~  154 (172)
T d1i0za2          82 IKL---KGYTNWAIGLSVADLIESMLKNLS---RIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVA  154 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHH
T ss_pred             eec---ccccchHHHHHHHHHHHHHhcCCC---cccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCC-CCCHHHHH
Confidence            884   578999999999999999998753   4788864 68888  67999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHH
Q 019519          319 GLEKLKPELKASIE  332 (340)
Q Consensus       319 ~l~~s~~~l~~~~~  332 (340)
                      +|++|+++|++..+
T Consensus       155 ~l~~Sa~~l~~~~~  168 (172)
T d1i0za2         155 QLKKSADTLWDIQK  168 (172)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.95  E-value=2.2e-28  Score=208.37  Aligned_cols=155  Identities=23%  Similarity=0.330  Sum_probs=129.6

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C--------CChHHHHHHHHHHhcchhhhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N--------LADEDIKALTKRTQDGGTEVVEA  244 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~--------~~~~~~~~l~~~v~~~~~~i~~~  244 (340)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++.+++ +        .+.+...++.+.++.++.++.. 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIK-   80 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEec-
Confidence            679999999999999999999999999999998 8999999998864 1        1122234555566666666655 


Q ss_pred             hcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHH
Q 019519          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (340)
Q Consensus       245 ~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~  321 (340)
                        +++++.+++|.++++++++++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        81 --~~~s~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~  154 (169)
T d1ldma2          81 --LKGYTSWAIGLSVADLAETIMKNLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQ  154 (169)
T ss_dssp             --HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHhhhhheecCCCC---ceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecC-CCCHHHHHHHH
Confidence              4578999999999999999998864   477775 468888  67999999999999999999998 89999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 019519          322 KLKPELKASIEKGVKF  337 (340)
Q Consensus       322 ~s~~~l~~~~~~~~~~  337 (340)
                      .|+++|+ ++.+.++|
T Consensus       155 ~s~~~l~-~~~k~lkf  169 (169)
T d1ldma2         155 KSATTLW-DIQKDLKF  169 (169)
T ss_dssp             HHHHHHH-HHHHTCCC
T ss_pred             HHHHHHH-HHHHhcCC
Confidence            9999997 66666665

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.95  E-value=1.9e-29  Score=215.83  Aligned_cols=157  Identities=24%  Similarity=0.397  Sum_probs=136.1

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-C----------CChHHHHHHHHHHhcchhhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVV  242 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~  242 (340)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++++ +          ++.+.++++.+.+++++.+++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            679999999999999999999999999999998 9999999998854 1          112234567778888889988


Q ss_pred             hhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC-CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHH
Q 019519          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (340)
Q Consensus       243 ~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l  320 (340)
                      +   ++|++.|++|.++++++++++.+..   .+++++ +++|.| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~---~kg~~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l  152 (172)
T d1llca2          80 K---LKGATFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESM  152 (172)
T ss_dssp             S---SSSCTTHHHHHHHHHHHHHHHHTCC---CCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCC-CCTTHHHHHH
T ss_pred             H---hhhhhhhhhHHHHHHHHHHHhcCCC---CccceeeeecCccCcccceEEEEEEEcCCceEEEecC-CCCHHHHHHH
Confidence            7   5789999999999999999999865   356665 578888 67899999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 019519          321 EKLKPELKASIEKGVKFA  338 (340)
Q Consensus       321 ~~s~~~l~~~~~~~~~~~  338 (340)
                      ++|+++|++.++++++-+
T Consensus       153 ~~s~~~lk~~i~~~~~~~  170 (172)
T d1llca2         153 QKSASQLKKVLTDAFAKN  170 (172)
T ss_dssp             HTTTTTTTTTTTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999988877644

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.7e-27  Score=200.50  Aligned_cols=149  Identities=23%  Similarity=0.336  Sum_probs=127.5

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCceeEEEecCCCccccccccCCCCC-CC-----------ChHHHHHHHHHHhcchhhh
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL-----------ADEDIKALTKRTQDGGTEV  241 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~~-----------~~~~~~~l~~~v~~~~~~i  241 (340)
                      |.||++|+++++|+++|++|++|+++|||+|++ +++|+||++++++ ++           ..+..+++...++..+.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            679999999999999999999999999999999 8999999999853 11           1123456777777777777


Q ss_pred             hhhhcCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHH
Q 019519          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (340)
Q Consensus       242 ~~~~~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~  318 (340)
                      ...   ++++.+++|.++..++.+++.+..   .+++++ +.+|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~~---k~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l-~L~~~E~~  154 (172)
T d2ldxa2          82 LDM---KGYTSWAIGLSVTDLARSILKNLK---RVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEG  154 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECC-CCCHHHHH
T ss_pred             hhc---ccchhHHHHHHHhHHHHhhcCCCc---cceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecC-CCCHHHHH
Confidence            763   578999999999999999998753   467775 467887  67999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHH
Q 019519          319 GLEKLKPELKAS  330 (340)
Q Consensus       319 ~l~~s~~~l~~~  330 (340)
                      +|++|++.||+.
T Consensus       155 ~l~~s~~~lk~~  166 (172)
T d2ldxa2         155 LLKKSADTLWNM  166 (172)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999754

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=7.7e-27  Score=199.65  Aligned_cols=158  Identities=24%  Similarity=0.244  Sum_probs=127.4

Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCcee-EEEecCCCccccccccCCCCCC----C-ChH-HHHHHHHHHhcchhhhhhhh
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKAN----L-ADE-DIKALTKRTQDGGTEVVEAK  245 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v~~~----~-~~~-~~~~l~~~v~~~~~~i~~~~  245 (340)
                      +|.||++||++++|+++|++|++|+++ |||+||+ +++|+||++++++.    + .+. ...+..+....++..++.. 
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQA-   78 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHH-
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHH-
Confidence            578999999999999999999999886 5699999 89999999998651    2 222 2334444445555555554 


Q ss_pred             cCCCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHH
Q 019519          246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (340)
Q Consensus       246 ~~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~  322 (340)
                       .+++++|++|.+++.++++++.+.+. ..++|++. ++|+|  ++++++|+||+++++|++.+.++ +|+++|+++|++
T Consensus        79 -~~~~s~~~~a~a~~~~~~~~~~~~~~-~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l-~L~~~E~~~l~~  155 (173)
T d1y7ta2          79 -RGASSAASAANAAIEHIRDWALGTPE-GDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEI  155 (173)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHHTBCCT-TCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCC-CCCHHHHHHHHH
T ss_pred             -hccCchhhHHHHHHHHHHHHhcccCC-CCceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCC-CCCHHHHHHHHH
Confidence             35788999999999999999997653 35788864 68988  78999999999987777666667 899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 019519          323 LKPELKASIEKGV  335 (340)
Q Consensus       323 s~~~l~~~~~~~~  335 (340)
                      |+++|+++++...
T Consensus       156 s~~~L~~~~e~vk  168 (173)
T d1y7ta2         156 TAQELLDEMEQVK  168 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=3.3e-27  Score=201.21  Aligned_cols=137  Identities=20%  Similarity=0.205  Sum_probs=109.8

Q ss_pred             CCeEEEEcCCCChHHHH--HHHHHhCCC--cceEEEEeCCC--cHHHHHHHhcC------CCCceEEEEecCCccccccC
Q 019519           28 DRKVAVLGAAGGIGQPL--ALLMKLNPL--VSRLALYDIAN--TPGVAADVGHI------NTRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~--a~~l~~~~~--~~el~L~D~~~--~~~~~~dl~~~------~~~~~v~~~~~~~d~~~al~   95 (340)
                      ++||+|||| |++|...  +..+.....  .+||+|+|+++  .++.++|+.|.      ....++..+   +|++++++
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~---td~~~al~   76 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLT---LDRRRALD   76 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEE---SCHHHHHT
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeec---CCchhhcC
Confidence            479999998 9888644  344444432  47999999988  56778887653      233455543   57789999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~  155 (340)
                      |||+||+++|.+++++++|.++                    +.+|+++++++++.|+++|||||+|++|||+|+||+++
T Consensus        77 gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~  156 (169)
T d1s6ya1          77 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  156 (169)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH
Confidence            9999999999887776665544                    57999999999999999999999999999999999987


Q ss_pred             HHHHHHhCCCCCCceEecc
Q 019519          156 AEVFKKAGTYNEKKLFGVT  174 (340)
Q Consensus       156 ~~~~~~sg~~~~~kviG~~  174 (340)
                         +|.   +|++||||+|
T Consensus       157 ---~k~---~p~~kviGlC  169 (169)
T d1s6ya1         157 ---LRY---TKQEKVVGLC  169 (169)
T ss_dssp             ---HHH---CCCCCEEECC
T ss_pred             ---HHH---CCCCCEEeeC
Confidence               665   5788999998

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.93  E-value=1.1e-25  Score=192.03  Aligned_cols=158  Identities=20%  Similarity=0.190  Sum_probs=121.0

Q ss_pred             chhHHHHHHHHHHHcCCCCCCCce-eEEEecCCCccccccccCCCCCC------CCh-HHHHHHHHHHhcchhhhhhhhc
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKAN------LAD-EDIKALTKRTQDGGTEVVEAKA  246 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~~------~~~-~~~~~l~~~v~~~~~~i~~~~~  246 (340)
                      .||++||++++|+++|++|++|++ +|||+||+ +++|+||++++++.      .++ ...+++.+.+..++..+...+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            489999999999999999999986 67799998 99999999998642      111 123455566666666666654 


Q ss_pred             CCCCccchHHHHHHHHHHHHHcCCCCCCcEEEee-eeeCCC--CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHH
Q 019519          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (340)
Q Consensus       247 ~kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s  323 (340)
                      +++++.++.+ +++..+..++.+..+  .+++++ +++|.|  ++++|||+||++|++||+.+.++ +|+++|+++|++|
T Consensus        80 ~~~~~~~~~~-a~~~~~~~~i~~~~~--~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l-~L~~~e~~~l~~s  155 (171)
T d1b8pa2          80 GVSSAASAAN-AAIDHIHDWVLGTAG--KWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVT  155 (171)
T ss_dssp             SSCCHHHHHH-HHHHHHHHHHHCCTT--CCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHH
T ss_pred             hhhhhhhhhH-HHHHHHHHHHhCCCc--cceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence            4444444444 444444455554433  356776 468887  78999999999999999999888 8999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 019519          324 KPELKASIEKGVKFA  338 (340)
Q Consensus       324 ~~~l~~~~~~~~~~~  338 (340)
                      +++|+++.+...+.|
T Consensus       156 ~~~L~~e~~~v~~ll  170 (171)
T d1b8pa2         156 LNELLEEQNGVQHLL  170 (171)
T ss_dssp             HHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998877665

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=6.6e-26  Score=192.28  Aligned_cols=136  Identities=20%  Similarity=0.231  Sum_probs=109.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH--HHHhCC--CcceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCC
Q 019519           27 PDRKVAVLGAAGGIGQPLAL--LMKLNP--LVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~--~l~~~~--~~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~   96 (340)
                      +..||+|||| |++|.+.+.  .+....  ..+||+|+|+++  +++.+.++.+..    .+.++...   +|++++++|
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~eal~~   77 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT---TDPEEAFTD   77 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE---SCHHHHHSS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec---CChhhccCC
Confidence            5689999998 999887543  333232  247999999998  455566665542    23456553   577899999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHH--------------------HHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLF--------------------NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~--------------------~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~  156 (340)
                      |||||+++|.++++|++|.+++                    .+|+++++++++.|+++||+||+|++|||+|++|+++ 
T Consensus        78 AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~-  156 (167)
T d1u8xx1          78 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT-  156 (167)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH-
T ss_pred             CCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH-
Confidence            9999999999998888887764                    4679999999999999999999999999999999997 


Q ss_pred             HHHHHhCCCCCCceEe
Q 019519          157 EVFKKAGTYNEKKLFG  172 (340)
Q Consensus       157 ~~~~~sg~~~~~kviG  172 (340)
                        +++   +|++|||.
T Consensus       157 --~k~---~P~~rVI~  167 (167)
T d1u8xx1         157 --RRL---RPNSKILN  167 (167)
T ss_dssp             --HHH---STTCCEEE
T ss_pred             --HHH---CCcccccC
Confidence              565   68899974

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.9e-26  Score=195.12  Aligned_cols=135  Identities=20%  Similarity=0.221  Sum_probs=103.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh--C--CCcceEEEEeCCC-cHHHHHHHhcCC--CCceEEEEecCCccccccCCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL--N--PLVSRLALYDIAN-TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~--~--~~~~el~L~D~~~-~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      |||+|||| |++|.+.++..+.  .  ...+||+|+|+++ ..+.+.|+.|..  ...++..   +++.+++++|||+||
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~---t~~~~~~l~~aDvVV   76 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---SDTFEGAVVDAKYVI   76 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---CSSHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE---ecCcccccCCCCEEE
Confidence            79999998 9999988764332  2  2368999999998 334456666553  2334443   245679999999999


Q ss_pred             EcCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHH
Q 019519          102 IPAGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  161 (340)
                      +++|.+++++++|.++                    ..++++++.++.+ +.++||+||+|++|||+|++|+++   ++.
T Consensus        77 ita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~---~~~  152 (162)
T d1up7a1          77 FQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV---RNY  152 (162)
T ss_dssp             ECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH---HHT
T ss_pred             EecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH---HHh
Confidence            9999987776665544                    4567778887866 667899999999999999999987   554


Q ss_pred             hCCCCCCceEecc
Q 019519          162 AGTYNEKKLFGVT  174 (340)
Q Consensus       162 sg~~~~~kviG~~  174 (340)
                         +|++|++|+|
T Consensus       153 ---~p~~rviGlC  162 (162)
T d1up7a1         153 ---LEYEKFIGLC  162 (162)
T ss_dssp             ---TCCSSEEECC
T ss_pred             ---CCCCCEEeeC
Confidence               5678999998

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.3e-24  Score=185.25  Aligned_cols=135  Identities=22%  Similarity=0.229  Sum_probs=106.1

Q ss_pred             CCCeEEEEcCCCChHHHHHH--HHHhCC-C-cceEEEEeCCC--cHHHHHHHhcCC----CCceEEEEecCCccccccCC
Q 019519           27 PDRKVAVLGAAGGIGQPLAL--LMKLNP-L-VSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~--~l~~~~-~-~~el~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~   96 (340)
                      +.|||+|||| |++|++.+.  .++... + .+||+|+|+++  +++.+.|+.|..    ...++...   +|++++++|
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~---td~~eaL~d   76 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT---MNLDDVIID   76 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE---SCHHHHHTT
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe---CChhhcccC
Confidence            3589999998 999987643  344332 2 46999999997  567777877643    34466553   678999999


Q ss_pred             CCEEEEcCCC------------------CCCCCCCHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 019519           97 SDVVIIPAGV------------------PRKPGMTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (340)
Q Consensus        97 aDiVi~~ag~------------------~~~~g~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (340)
                      ||+||++++.                  +++++++|.+.        +.+|+++++++++.|+++||++|+|++|||+|+
T Consensus        77 ad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv  156 (171)
T d1obba1          77 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFE  156 (171)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHH
T ss_pred             CCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHH
Confidence            9999987654                  44556655443        578999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCCceEe
Q 019519          151 TVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       151 ~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      +|+++   ++++|    -|+||
T Consensus       157 ~t~~~---~k~~~----~k~iG  171 (171)
T d1obba1         157 GTTLV---TRTVP----IKAVG  171 (171)
T ss_dssp             HHHHH---HHHSC----SEEEE
T ss_pred             HHHHH---HHhcC----CCccC
Confidence            99987   67776    48887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.3e-09  Score=93.06  Aligned_cols=120  Identities=18%  Similarity=0.257  Sum_probs=86.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c--HHH--H-H---HHhcCCC--------------CceEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--A-A---DVGHINT--------------RSEVAG   83 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~--~~~--~-~---dl~~~~~--------------~~~v~~   83 (340)
                      ...||+|||| |.+|+.+|..++..|+  +++|+|.++ .  .+.  . .   .+.....              ..++..
T Consensus         3 ~IkkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~   79 (192)
T d1f0ya2           3 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   79 (192)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             eeEEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc
Confidence            3469999998 9999999999999998  999999986 1  111  0 0   1111110              124555


Q ss_pred             EecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCc-cHHHHHHHHHH
Q 019519           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKK  161 (340)
Q Consensus        84 ~~~~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~-~t~~~~~~~~~  161 (340)
                      +   +|+.+++++||+|+.++              .+|+++.+++...+++++| ++++  .||.... ++.++    ..
T Consensus        80 ~---~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la----~~  136 (192)
T d1f0ya2          80 S---TDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSLQITSIA----NA  136 (192)
T ss_dssp             E---SCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSSCHHHHH----TT
T ss_pred             c---chhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCcee--eccCcccccchhh----hh
Confidence            3   57778899999999996              3789999999999999996 5544  8888764 44443    22


Q ss_pred             hCCCCCCceEecc
Q 019519          162 AGTYNEKKLFGVT  174 (340)
Q Consensus       162 sg~~~~~kviG~~  174 (340)
                      .  -.|+|++|++
T Consensus       137 ~--~~p~r~ig~H  147 (192)
T d1f0ya2         137 T--TRQDRFAGLH  147 (192)
T ss_dssp             S--SCGGGEEEEE
T ss_pred             c--cCHhHEEeec
Confidence            2  4577888885

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.82  E-value=4.9e-09  Score=88.82  Aligned_cols=119  Identities=19%  Similarity=0.194  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-c--HH--HHH----HHhcCC---------CCceEEEEecCCc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PG--VAA----DVGHIN---------TRSEVAGYMGNDQ   89 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~--~~--~~~----dl~~~~---------~~~~v~~~~~~~d   89 (340)
                      ..||+|||| |.+|+.+|..++..|+  +++++|+++ .  .+  ...    ++....         ...++...   ++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~---~~   77 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT---LS   77 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE---SS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc---cc
Confidence            469999998 9999999999999998  999999986 1  11  111    111111         11246553   34


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCcc-HHHHHHHHHHhCCCCC
Q 019519           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNST-VPIAAEVFKKAGTYNE  167 (340)
Q Consensus        90 ~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~-t~~~~~~~~~sg~~~~  167 (340)
                       .+++.+||+||.++              .+|+++.+++.+++++++| ++++  +||..... +.++    ...  -.|
T Consensus        78 -~~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l~i~~la----~~~--~~p  134 (186)
T d1wdka3          78 -YGDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTISISLLA----KAL--KRP  134 (186)
T ss_dssp             -STTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHHHHG----GGC--SCG
T ss_pred             -cccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCeeE--EeccccccHHHHH----Hhc--cCc
Confidence             46799999999986              3789999999999999996 5644  88888754 4332    222  346


Q ss_pred             CceEeccc
Q 019519          168 KKLFGVTT  175 (340)
Q Consensus       168 ~kviG~~~  175 (340)
                      +|++|++.
T Consensus       135 ~r~~g~Hf  142 (186)
T d1wdka3         135 ENFVGMHF  142 (186)
T ss_dssp             GGEEEEEC
T ss_pred             hheEeecc
Confidence            78888753

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=6.1e-07  Score=79.23  Aligned_cols=73  Identities=11%  Similarity=0.060  Sum_probs=57.7

Q ss_pred             CCCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHH
Q 019519          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (340)
Q Consensus       248 kg~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s  323 (340)
                      ++...++  ..++++|+||.+|.+   .++.+++ ++|.+   |+|+++++||+|+++|+.++ .+++|++...++++.-
T Consensus       127 ~~~~~~~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~~  200 (253)
T d1up7a2         127 RGGSMYS--TAAAHLIRDLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTL-SQGKGDHFALSFIHAV  200 (253)
T ss_dssp             STTTTHH--HHHHHHHHHHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEB-CCCCCCHHHHHHHHHH
T ss_pred             ccCcchH--HHHHHHHHHHHcCCC---cEEEEeCCCcCcCCCCChhhheEEEEEecCCccccc-ccCCCcHHHHHHHHHH
Confidence            3555566  789999999999875   3444554 67775   89999999999999999997 6679999998888664


Q ss_pred             HHH
Q 019519          324 KPE  326 (340)
Q Consensus       324 ~~~  326 (340)
                      ...
T Consensus       201 ~~~  203 (253)
T d1up7a2         201 KMY  203 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.44  E-value=5.2e-07  Score=76.80  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC----------------CCCceEEEEecCCcccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----------------NTRSEVAGYMGNDQLGQ   92 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~----------------~~~~~v~~~~~~~d~~~   92 (340)
                      |||+|||+ |+||..+|..|+..++  +|+.+|+++.  ....|...                ....++..+   +|+.+
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~--~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~---~~~~~   72 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSST--KIDLINQGKSPIVEPGLEALLQQGRQTGRLSGT---TDFKK   72 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE---SCHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHH--HHHHhcccCCcccchhhhhhhhhhhcccccccC---CCHHH
Confidence            79999998 9999999999999998  9999999852  11112111                012245543   57788


Q ss_pred             ccCCCCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHH
Q 019519           93 ALEDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPI  154 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNP~d~~t~~  154 (340)
                      ++++||+++++.+.|... +......+   ..+...+...++...++..+++ -|-|.+....+
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~  133 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNV  133 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHT
T ss_pred             HHhhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhh
Confidence            999999999999888544 33222222   2344445555554556665554 46566554443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.43  E-value=1.8e-07  Score=79.10  Aligned_cols=73  Identities=12%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC--------CCCceEEEEecCCccccccCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------NTRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~--------~~~~~v~~~~~~~d~~~al~~a   97 (340)
                      |.|.||+|+|| |..|+++|..|...+.  +|.|++.++.....+.-.+.        ..+.++..+   +|+++++++|
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t---~~l~~a~~~a   78 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT---SDVEKAYNGA   78 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE---SCHHHHHTTC
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhcccccccccccccccccccc---hhhhhccCCC
Confidence            45668999998 9999999999998887  99999987522221111221        124467654   6788999999


Q ss_pred             CEEEEcC
Q 019519           98 DVVIIPA  104 (340)
Q Consensus        98 DiVi~~a  104 (340)
                      |+||++.
T Consensus        79 d~iiiav   85 (189)
T d1n1ea2          79 EIILFVI   85 (189)
T ss_dssp             SCEEECS
T ss_pred             CEEEEcC
Confidence            9999974

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=2.8e-07  Score=84.12  Aligned_cols=112  Identities=17%  Similarity=0.114  Sum_probs=74.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-c---CCccccccC--CCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-G---NDQLGQALE--DSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~--~aDiV  100 (340)
                      |||.||||+||+|++++..|+..++  +|+++|...  .......+.+... .++.... +   ...+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHT-SCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcC-CCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999987  999999643  1211111111110 1122211 1   123345555  78999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 019519          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM  143 (340)
Q Consensus       101 i~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv  143 (340)
                      |++|+.+...  -+...+.++.|+...+.+.+.++++....+|..
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~  122 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS  122 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEec
Confidence            9999864211  123567788999999999999999876655443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.37  E-value=8.4e-07  Score=72.74  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      |||+|||+ |.+|++++..|...++  +|..+|+++. ...+.++.  ..  . ...   ++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~--~~--~-~~~---~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQ--LV--D-EAG---QD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT--SC--S-EEE---SC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhh--cc--c-eee---ee-cccccccccccccC--c
Confidence            79999998 9999999999999988  9999998752 11222211  11  1 111   33 47899999999874  3


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                                    ...+.++.+.+..+- ++.+|+..++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          234555666666654 5676665544

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.5e-06  Score=73.58  Aligned_cols=105  Identities=13%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec----CCccccccCCCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVi  101 (340)
                      |.|+||+|+||+|++|++++..|+..++  +|.+++.+..+     +.... ...++...+    ..++.++++++|+||
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~-----~~~~~-~~~~~~~~gD~~d~~~l~~al~~~d~vi   72 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhh-----ccccc-ccccccccccccchhhHHHHhcCCCEEE
Confidence            5678999999999999999999999987  99999876521     11111 111222221    145568899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  144 (340)
                      +++|.........     .+....+.+++.+++.+-+ .+|.+
T Consensus        73 ~~~g~~~~~~~~~-----~~~~~~~~l~~aa~~~~v~-r~i~~  109 (205)
T d1hdoa_          73 VLLGTRNDLSPTT-----VMSEGARNIVAAMKAHGVD-KVVAC  109 (205)
T ss_dssp             ECCCCTTCCSCCC-----HHHHHHHHHHHHHHHHTCC-EEEEE
T ss_pred             EEeccCCchhhhh-----hhHHHHHHHHHHHHhcCCC-eEEEE
Confidence            9987542222211     3445666778888877644 33434

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.37  E-value=4.2e-06  Score=74.62  Aligned_cols=74  Identities=15%  Similarity=0.139  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 019519          257 YAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLKPELKASIE  332 (340)
Q Consensus       257 ~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~  332 (340)
                      ..++++|+||.+|.+   .++.+++ ++|.+   |+|++++|||+|+++|+.++ .+++|++...++++.-..--+-.++
T Consensus       153 e~av~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~~k~~e~Ltve  228 (276)
T d1u8xx2         153 SYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPI-TVGTIPQFQKGLMEQQVSVEKLTVE  228 (276)
T ss_dssp             HHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEEC-CCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC---cEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEee-ecCCCcHHHHHHHHHHHHHHHHHHH
Confidence            678999999999975   3444444 67775   89999999999999999997 5679999999888764443333344


Q ss_pred             HH
Q 019519          333 KG  334 (340)
Q Consensus       333 ~~  334 (340)
                      .+
T Consensus       229 Aa  230 (276)
T d1u8xx2         229 AW  230 (276)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.36  E-value=9.7e-07  Score=73.08  Aligned_cols=100  Identities=24%  Similarity=0.334  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcCC--C-CceEEE--EecCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHIN--T-RSEVAG--YMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~~--~-~~~v~~--~~~~~d~~~al~~aDiVi~  102 (340)
                      +||+|||| |.+|+.++..|...|+  ++.+||+++.. ....+.....  . ......  ...++|..+++++||+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999998 9999999999999998  99999987521 1111111110  0 000110  0012567899999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  147 (340)
                      +.  |              .....+++++++.+- ++.+++...|.
T Consensus        79 ~v--~--------------~~~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          79 VV--P--------------AIHHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             CS--C--------------GGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EE--c--------------hhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence            85  2              123456777777775 56766544444

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.32  E-value=4.2e-07  Score=81.93  Aligned_cols=111  Identities=19%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcCCCCceEEEEec----CCccccccCCC--CEE
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG----NDQLGQALEDS--DVV  100 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~a--DiV  100 (340)
                      ||.|+||+|++|++++..|+..++  +|+.+|....   ......+...   .+++...+    ..++.++++++  |+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            899999999999999999999988  8999985431   1111122221   12333221    12344556554  999


Q ss_pred             EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       101 i~~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      |++|+......  .+.......|+...+.+.+...+....-.++..|
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            99987643221  2346677889999999999999987665555544

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.2e-06  Score=77.26  Aligned_cols=166  Identities=11%  Similarity=0.049  Sum_probs=101.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      .||.|+||+|++|++++..|+..++  +|+.+|...  ...   .+.+.....++.... .+.++.++.++|+||++|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~---~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~   75 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKR---NVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASP   75 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGG---GTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcCCHH---HHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECccc
Confidence            5999999999999999999999887  899998632  111   111111122333332 23345677899999999975


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC------CCC-ccHHHHHHHHHHhCCCCCCceEeccchh
Q 019519          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------PVN-STVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (340)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN------P~d-~~t~~~~~~~~~sg~~~~~kviG~~~ld  177 (340)
                      ...+  .....+.+..|+....++.+.+++...  .+|.+|.      |.. .+.+-.  .....+ +.|...+|.+...
T Consensus        76 ~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~~--~~~~~~-~~p~~~Y~~sK~~  150 (312)
T d2b69a1          76 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDY--WGHVNP-IGPRACYDEGKRV  150 (312)
T ss_dssp             CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTC--CCBCCS-SSTTHHHHHHHHH
T ss_pred             CCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCccc--cCCCCC-CCCccHHHHHHHH
Confidence            4321  234567788999999999999998754  4444422      110 010000  000011 2345566666444


Q ss_pred             HHHHHHHHHHHcCCCCCCCce-eEEEecC
Q 019519          178 VVRAKTFYAGKANVNVAEVNV-PVVGGHA  205 (340)
Q Consensus       178 ~~R~~~~la~~l~v~~~~v~~-~v~G~hg  205 (340)
                      ...+....++..|++..-++. .++|.+.
T Consensus       151 ~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         151 AETMCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            455666667777877666653 4777553

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.1e-07  Score=79.63  Aligned_cols=111  Identities=15%  Similarity=0.130  Sum_probs=74.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEE--EecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG--YMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~al~~aDiVi~~  103 (340)
                      |+++||.|+||+|++|++++..|+..+.+.+|.+++.++..........    ..+..  +....++.++++++|+|+++
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~----i~~~~~D~~~~~~~~~~~~~~d~vi~~   87 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN----VNQEVVDFEKLDDYASAFQGHDVGFCC   87 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG----CEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce----eeeeeeccccccccccccccccccccc
Confidence            4557999999999999999999998887779999998651100000010    01111  11224667889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  141 (340)
                      +|... ......++...|......+++...+...+-++
T Consensus        88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi  124 (232)
T d2bkaa1          88 LGTTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN  124 (232)
T ss_dssp             CCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccc-cccchhhhhhhcccccceeeecccccCccccc
Confidence            87531 12234556677888999999988876655433

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.27  E-value=9.6e-07  Score=79.82  Aligned_cols=168  Identities=14%  Similarity=0.131  Sum_probs=103.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC----cceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC----CccccccCCCCEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~----~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~al~~aDiV  100 (340)
                      |||.|+||+|++|++++..|+..++    ..++..+|.....+....+.......++......    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999988763    4678888875421111122222222334433211    1223456899999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC------CccHHHHHHHHHHhCCCCCCceEe
Q 019519          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV------NSTVPIAAEVFKKAGTYNEKKLFG  172 (340)
Q Consensus       101 i~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~------d~~t~~~~~~~~~sg~~~~~kviG  172 (340)
                      +++|+.+...  .......+..|+.....+.+.+.++...-+|...|.-+      ...+       ..+. +.|...+|
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~-------E~~~-~~p~~~Y~  152 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWT-------ESSP-LEPNSPYA  152 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBC-------TTSC-CCCCSHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCC-------CCCC-CCCCCHHH
Confidence            9998765322  12345567889999999999999887654443322211      1111       1222 44555667


Q ss_pred             ccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          173 VTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       173 ~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      .+.+....+...+++..+++...++ ..++|.+
T Consensus       153 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  185 (322)
T d1r6da_         153 ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcC
Confidence            6654455566667788888877776 4577854

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.27  E-value=7.1e-07  Score=74.62  Aligned_cols=95  Identities=22%  Similarity=0.314  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcC----CC-----CceEEEEecCCccccccCCCCE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NT-----RSEVAGYMGNDQLGQALEDSDV   99 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~----~~-----~~~v~~~~~~~d~~~al~~aDi   99 (340)
                      |||+|||+ |..|+++|..|...+.  +|.|+..+........+...    ..     ...+.   .++|+.+++++||+
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~ad~   74 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF---WPEQLEKCLENAEV   74 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEE---CGGGHHHHHTTCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccc---ccccHHHHHhccch
Confidence            89999998 9999999999998887  99999764323333334321    11     12232   24678899999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ||++.  |              ...++++++++..+-++..+++.+
T Consensus        75 Ii~av--p--------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          75 VLLGV--S--------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             EEECS--C--------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             hhccc--c--------------hhhhHHHHHhhccccccceecccc
Confidence            99974  3              245567777777776655555443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=1.3e-06  Score=80.26  Aligned_cols=165  Identities=11%  Similarity=0.009  Sum_probs=97.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH---HHHHHHhcC--CCCceEEEEec----CCccccccCCC--C
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHI--NTRSEVAGYMG----NDQLGQALEDS--D   98 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~---~~~~dl~~~--~~~~~v~~~~~----~~d~~~al~~a--D   98 (340)
                      ++.|+||+|++|++++..|+..++  +|+.+|.....   .....+.+.  ....+++...+    ..++++.+++.  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            445999999999999999999988  99999975310   111111111  11234544321    12233455544  9


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEec------CCCCc-cHHHHHHHHHHhCCCCC
Q 019519           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMIS------NPVNS-TVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        99 iVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~t------NP~d~-~t~~~~~~~~~sg~~~~  167 (340)
                      +|+++|+.+...  -......+.-|+.....+.+.+++++-  ...+|.+|      +|.+. .+       .... +.|
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~-------E~~~-~~P  152 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQK-------ETTP-FYP  152 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBC-------TTSC-CCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcC-------CCCC-CCC
Confidence            999999875322  345566778899999999999998763  34566544      33221 21       1122 445


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCce-eEEEec
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (340)
                      ...+|.+.+....+-...++..+++..-++. .+.|..
T Consensus       153 ~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~  190 (357)
T d1db3a_         153 RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPR  190 (357)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            5667776555555556666777776655553 366754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.19  E-value=1.3e-06  Score=80.19  Aligned_cols=172  Identities=13%  Similarity=0.002  Sum_probs=101.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe--cCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVi~~a  104 (340)
                      +.|||.|+||+||+|++++..|+..++  +|+.+|.........++.    ..++....  ...++.+++++.|.||+++
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcc----cCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            468999999999999999999999998  999999764211111111    11222110  1123345678999999998


Q ss_pred             CCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH---H----HHHHHhCCCCCCceEecc
Q 019519          105 GVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA---A----EVFKKAGTYNEKKLFGVT  174 (340)
Q Consensus       105 g~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~---~----~~~~~sg~~~~~kviG~~  174 (340)
                      +.....   ..........|......+.....+.+.. .+|..|.-...-...-   .    .....+. ..|...+|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~-~~p~~~Yg~s  165 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWP-AEPQDAFGLE  165 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSS-BCCSSHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCc-CCCCCHHHHH
Confidence            654321   2345566778999999999999887654 3443332111000000   0    0000111 2345566766


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCc-eeEEEecCC
Q 019519          175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAG  206 (340)
Q Consensus       175 ~ld~~R~~~~la~~l~v~~~~v~-~~v~G~hg~  206 (340)
                      .+...++-....+..|++..-++ ..++|.++.
T Consensus       166 K~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         166 KLATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            55555665666677777655555 346776543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=7.1e-07  Score=72.75  Aligned_cols=103  Identities=16%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      |||+|+|+ |.+|+.++..|...++  ++.++|.++.....................  .+..+++.++|+||++.-.+ 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT--ANDPDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE--ESCHHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCccccccccc--cchhhhhcccceEEEeeccc-
Confidence            89999998 9999999999999998  999999876211111111111111111111  22357789999999986322 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccH
Q 019519          109 KPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTV  152 (340)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t  152 (340)
                                     -+.+..+.+..+ .++..|+.+.|=++...
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccHHH
Confidence                           134455666555 36888888889776543

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.07  E-value=1.1e-05  Score=71.67  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             CCccchHHHHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCCHHHHHHHHHHH
Q 019519          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLK  324 (340)
Q Consensus       249 g~~~~s~A~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~  324 (340)
                      ++..++  ..++++|+||++|.+.   ++.+++ ++|.+   |+|++++|||+|+++|+.++ .+++|++...++++...
T Consensus       140 ~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~~~  213 (270)
T d1s6ya2         140 GGAYYS--DAACSLISSIYNDKRD---IQPVNTRNNGAIASISAESAVEVNCVITKDGPKPI-AVGDLPVAVRGLVQQIK  213 (270)
T ss_dssp             CSCCHH--HHHHHHHHHHHHTCCC---EEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEEC-CCBCCCHHHHHHHHHHH
T ss_pred             cCcchH--HHHHHHHHHHhcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEECCceEee-ecCCCcHHHHHHHHHHH
Confidence            344445  7899999999999753   444554 67775   89999999999999999997 56799999999887755


Q ss_pred             HHHHHHHHHH
Q 019519          325 PELKASIEKG  334 (340)
Q Consensus       325 ~~l~~~~~~~  334 (340)
                      ..-+-.++.+
T Consensus       214 ~~e~L~veAa  223 (270)
T d1s6ya2         214 SFERVAAEAA  223 (270)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444344443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.04  E-value=6.6e-06  Score=76.17  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHH------------------HHHHhcCCCCceEEEEecC-C-
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV------------------AADVGHINTRSEVAGYMGN-D-   88 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~------------------~~dl~~~~~~~~v~~~~~~-~-   88 (340)
                      |||.|+||+|++|++++..|++.|+  +|+.+|.......                  ...+... ...+++...+. . 
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDICD   78 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCCC
Confidence            7999999999999999999999998  9999984211000                  0000000 01123332211 1 


Q ss_pred             --ccccccC--CCCEEEEcCCCCCCC--CCC---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 019519           89 --QLGQALE--DSDVVIIPAGVPRKP--GMT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        89 --d~~~al~--~aDiVi~~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                        .+.++++  +.|+|+++|+....+  -.+   ..+....|+.....+.+.+.+++.+..++..|.
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss  145 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  145 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccc
Confidence              2234454  359999999764311  122   335668899999999999999998877766654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.04  E-value=2.1e-05  Score=64.23  Aligned_cols=98  Identities=17%  Similarity=0.230  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |.||+|||+ |.+|++++..|...++..+|+.+|.+. ....+.++.-  . ...  .+  ........++|+||++.  
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~--~-~~~--~~--~~~~~~~~~~dlIila~--   70 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI--I-DEG--TT--SIAKVEDFSPDFVMLSS--   70 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS--C-SEE--ES--CGGGGGGTCCSEEEECS--
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc--c-hhh--hh--hhhhhhccccccccccC--
Confidence            348999997 999999999999888766899999875 2222332221  1 111  11  11134456899999985  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d  149 (340)
                      |              ...+.++.+.+..+- ++.+++-+++.-.
T Consensus        71 p--------------~~~~~~vl~~l~~~~~~~~ii~d~~s~k~  100 (171)
T d2g5ca2          71 P--------------VRTFREIAKKLSYILSEDATVTDQGSVKG  100 (171)
T ss_dssp             C--------------HHHHHHHHHHHHHHSCTTCEEEECCSCCT
T ss_pred             C--------------chhhhhhhhhhhccccccccccccccccH
Confidence            2              233445555666554 6777776665433

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.99  E-value=9.2e-06  Score=73.65  Aligned_cols=170  Identities=13%  Similarity=-0.011  Sum_probs=105.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cH-H--HHHHHhcCCCCceEEEEec-CCc---cccccCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TP-G--VAADVGHINTRSEVAGYMG-NDQ---LGQALEDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~-~--~~~dl~~~~~~~~v~~~~~-~~d---~~~al~~a   97 (340)
                      ++++|.|+||+|++|++++..|...|+  +|..+|...  .. .  ....+........++.... ..|   ......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            456999999999999999999999998  999999643  11 1  1111111111112333221 111   22456788


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC------CCccHHHHHHHHHHhCCCCCCc
Q 019519           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VNSTVPIAAEVFKKAGTYNEKK  169 (340)
Q Consensus        98 DiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP------~d~~t~~~~~~~~~sg~~~~~k  169 (340)
                      |+|++++..+..+  .......+..|+.....+.+.+.+.....+|...|..      -...++       .+. ..|..
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E-------~~~-~~p~~  164 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVE-------DTI-GKPLS  164 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCT-------TCC-CCCCS
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccC-------CCC-CCCCC
Confidence            9999987654221  2345667788999999999999988766555544421      111211       122 34556


Q ss_pred             eEeccchhHHHHHHHHHHHcCCCCCCCce-eEEEecCC
Q 019519          170 LFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAG  206 (340)
Q Consensus       170 viG~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~  206 (340)
                      .+|.+.+...++...+++..+++..-++. .++|.+.+
T Consensus       165 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         165 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            67776666666777777888887766673 47786543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=7.2e-06  Score=74.28  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-C---cc-ccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-D---QL-GQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~---d~-~~al~~aDiVi~~  103 (340)
                      |||.|+||+|++|++++..|+..+. .+|+.+|..... . .++..   .++++...+. +   ++ +.+++++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~-~~V~~ld~~~~~-~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDA-I-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGG-G-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCcc-h-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            7999999999999999998887773 289999976421 0 01111   1234433211 1   21 2367899999999


Q ss_pred             CCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019519          104 AGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPN  138 (340)
Q Consensus       104 ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (340)
                      |+......  ......+..|+.....+++.+.+....
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~  111 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR  111 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCE
T ss_pred             cccccccccccCCcccccccccccccccccccccccc
Confidence            98643221  223456789999999999999887654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.93  E-value=5.9e-05  Score=68.29  Aligned_cols=114  Identities=11%  Similarity=-0.030  Sum_probs=72.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcC-CCCceEEEEe----cCCccccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVAGYM----GNDQLGQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~-~~~~~v~~~~----~~~d~~~al~~aDiVi~  102 (340)
                      .||.|+||+|++|++++..|+..|+  +|+....+.. ......+.+. ..........    ....+.++++++|.|++
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            5999999999999999999999987  7776554431 1111111111 1111111111    12345578999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      .++.. ....+...+...|+....++.+.+.++.--..++..|
T Consensus        90 ~a~~~-~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          90 IASVV-SFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             CCCCC-SCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             hcccc-cccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence            88754 2345566677789999999999998874223344333

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.2e-05  Score=73.01  Aligned_cols=113  Identities=18%  Similarity=0.057  Sum_probs=72.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cH--HHHHHHhcCCCCceEEEEe-cCCccccccC--CCCEEE
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TP--GVAADVGHINTRSEVAGYM-GNDQLGQALE--DSDVVI  101 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~--~~~~dl~~~~~~~~v~~~~-~~~d~~~al~--~aDiVi  101 (340)
                      .|.|+||+||+|++++..|+..++  +|+.+|...   ..  .....+.+... ..+.... +..+++.+++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHI-PFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCC-CEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcccCC-eEEEeecCCHHHHHHHHhccCCCEEE
Confidence            488999999999999999999987  999998643   11  11122222211 1122110 0112333333  789999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ++|+.+...  .+........|......+.+..++.....++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            999865321  23445667789999999999999887665554433

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.90  E-value=9.2e-06  Score=73.89  Aligned_cols=177  Identities=15%  Similarity=0.101  Sum_probs=97.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec----CCccccccCCCCEEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVi~  102 (340)
                      .||||.|+||+|+||++++..|+..++-..++.+|.....+....+... ...++....+    ...+.+++++.|.|++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            3789999999999999999999887763356667743211100011111 1223443321    1234567789999999


Q ss_pred             cCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc-----HHHH-----HHHHHHhCCCCCCce
Q 019519          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST-----VPIA-----AEVFKKAGTYNEKKL  170 (340)
Q Consensus       103 ~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~-----t~~~-----~~~~~~sg~~~~~kv  170 (340)
                      .|+......  ....+.+..|+.....+.......+..-+++..+.--+..     ....     ......+. ..|...
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~-~~p~s~  158 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN-YNPSSP  158 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSC-CCCCSH
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCC-CCCCCH
Confidence            887553221  2335667889999999999999887532222111100000     0000     00000011 223455


Q ss_pred             EeccchhHHHHHHHHHHHcCCCCCCCce-eEEEecC
Q 019519          171 FGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHA  205 (340)
Q Consensus       171 iG~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg  205 (340)
                      +|.+-+...++.....+..+++..-++. .++|.+.
T Consensus       159 Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         159 YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            6666555555555556666766555543 4667543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.89  E-value=4.2e-05  Score=70.30  Aligned_cols=173  Identities=16%  Similarity=0.096  Sum_probs=95.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh-CCCcceEEEEeCCC----------c-HHHHHHHhcCC------CCceEEEEec-CCc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN----------T-PGVAADVGHIN------TRSEVAGYMG-NDQ   89 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~-~~~~~el~L~D~~~----------~-~~~~~dl~~~~------~~~~v~~~~~-~~d   89 (340)
                      |||.|+||+||+|++++..|+. .++  +|+.+|...          . ......+.+..      ...++....+ -.|
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence            7999999999999999988875 677  899999411          1 22222222211      1122333221 112


Q ss_pred             ---cccc---cCCCCEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-C--ccHHHHHH-
Q 019519           90 ---LGQA---LEDSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-N--STVPIAAE-  157 (340)
Q Consensus        90 ---~~~a---l~~aDiVi~~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~-d--~~t~~~~~-  157 (340)
                         ++++   .+++|+|+++|+......  .........|......+.....+..+..++...+--+ .  ..-....+ 
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence               2222   357899999997643221  2345567789999999999999888765554321110 0  00000000 


Q ss_pred             --HHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCce-eEEEec
Q 019519          158 --VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (340)
Q Consensus       158 --~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (340)
                        +..... +.|...+|.+.+...++-....+..|++...++. .+.|..
T Consensus       161 ~~~~e~~~-~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~  209 (383)
T d1gy8a_         161 EPIDINAK-KSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (383)
T ss_dssp             CCBCTTSC-CBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             cccccccC-CCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccC
Confidence              000011 3344556665555555666666777776655553 355643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.87  E-value=2.2e-05  Score=63.84  Aligned_cols=64  Identities=23%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||. |.+|+.+|..|+..++  +|..+|+++.  ...++.....    ..   ..+..+++++||+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~~----~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAGA----ET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTTC----EE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhhh----hh---cccHHHHHhCCCeEEEEc
Confidence            79999998 9999999999999998  9999998752  2223332221    11   134578899999999984

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.86  E-value=4.8e-06  Score=76.66  Aligned_cols=173  Identities=14%  Similarity=0.092  Sum_probs=98.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEec-CCc---cccccC--CCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQALE--DSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al~--~aDiVi~  102 (340)
                      |||.|+||+|++|++++..|+..++ ..++++|.....+....+.+.....++..... -.|   +++.++  ++|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            7999999999999999999988876 24677886431111112333332334554321 122   223333  6899999


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCC--------cEEEEecCCC------C-------ccHHHHHHHH
Q 019519          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPN--------AIVNMISNPV------N-------STVPIAAEVF  159 (340)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~--------a~viv~tNP~------d-------~~t~~~~~~~  159 (340)
                      +|+.+..+  -......+..|+.....+.+.+.++...        ..+|..|.-.      .       ......   .
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~---~  156 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF---T  156 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB---C
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCc---c
Confidence            99754211  0123556788888888888888765322        2444443211      0       000000   0


Q ss_pred             HHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCce-eEEEecCC
Q 019519          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAG  206 (340)
Q Consensus       160 ~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~  206 (340)
                      .... ..|...+|.+-+...++....++..+++...++. .++|.++.
T Consensus       157 e~~~-~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~  203 (361)
T d1kewa_         157 ETTA-YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF  203 (361)
T ss_dssp             TTSC-CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC
T ss_pred             cCCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCC
Confidence            0011 2344556776555556666667777887766663 46786543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.79  E-value=4.2e-05  Score=62.19  Aligned_cols=65  Identities=22%  Similarity=0.344  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+||++||. |.+|+.+|..|...++  +|..||++...  ..++....   ...    ..++.++++++|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~~--~~~~~~~~---~~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQSA--VDGLVAAG---ASA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHTT---CEE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchhh--hhhhhhhh---ccc----cchhhhhccccCeeeecc
Confidence            569999998 9999999999999998  99999987422  22333322   121    134578899999999975

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.73  E-value=6.1e-05  Score=67.11  Aligned_cols=165  Identities=14%  Similarity=0.074  Sum_probs=95.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-Ccc---cccc--CCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQL---GQAL--EDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d~---~~al--~~aDiVi~  102 (340)
                      +||.|+||+|++|++++..|+..|+  +|+.+|..........+.+.....++...... .|.   .+.+  ...+++++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            3899999999999999999999888  99999976521111122322222345443211 121   1111  24667777


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-------CCccHHHHHHHHHHhCCCCCCceEec
Q 019519          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP-------VNSTVPIAAEVFKKAGTYNEKKLFGV  173 (340)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-------~d~~t~~~~~~~~~sg~~~~~kviG~  173 (340)
                      +++.....  .......+..|+.....+.+.+.++.+...++..|.-       .....       +.+. +.|...+|.
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~-------E~~~-~~p~~~Y~~  150 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQD-------ENTP-FYPRSPYGV  150 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBC-------TTSC-CCCCSHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCC-------CCCC-ccccChhHH
Confidence            76543221  2345677888999999999999999877666654321       11111       1111 334445555


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCce-eEEEe
Q 019519          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGG  203 (340)
Q Consensus       174 ~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~  203 (340)
                      +.+...++.....+..+++...++. -+.|.
T Consensus       151 sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp  181 (321)
T d1rpna_         151 AKLYGHWITVNYRESFGLHASSGILFNHESP  181 (321)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEEecccCC
Confidence            5444445555556667765444432 24554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.72  E-value=2.2e-05  Score=71.13  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEec-CCc---cccccC--CCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQALE--DSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al~--~aD   98 (340)
                      +.+||.|+||+|++|++++..|+..++  +|..+|.+..  .... +.....  ..++...+ -.|   +.++++  ..|
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~-~~~~~~--~~i~~~~~Dl~d~~~l~~~~~~~~~~   81 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLF-ETARVA--DGMQSEIGDIRDQNKLLESIREFQPE   81 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHH-HHTTTT--TTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHH-hhhhcc--cCCeEEEeeccChHhhhhhhhhchhh
Confidence            347999999999999999999999998  9999998762  2221 111111  12222211 112   223343  458


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        99 iVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +|+++++.+...  ...-......|+.....+.+.+.+......++..|
T Consensus        82 ~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          82 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            999988754211  12234566779999999999999987666555443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.57  E-value=3.4e-05  Score=64.94  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-Cc-cccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ-LGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d-~~~al~~aDiVi~~ag  105 (340)
                      ++||.|+||+|++|++++..|+..+...+|.....+...          ..+++...... .+ ......+.|.|++++|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------hcccccccccchhhhhhccccchheeeeeee
Confidence            469999999999999999999988875566655443210          01122211100 01 1233456899999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  141 (340)
                      ...........+...|......+++..++...+-++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          72 TTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeccccccccccccchhhhhhhcccccccccccccc
Confidence            654333445677788889899999988876555443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.56  E-value=4.4e-05  Score=61.51  Aligned_cols=65  Identities=14%  Similarity=0.241  Sum_probs=46.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||+ |.+|++++..|+..+.  ++.++|.+...  ..++....   .+..   ..+..+++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~--~~~l~~~~---g~~~---~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL---ALPY---AMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH---TCCB---CSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHh--HHhhcccc---ceee---echhhhhhhccceeeeec
Confidence            79999997 9999999999988776  99999976421  12222110   0111   134578889999999985

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=9.4e-05  Score=59.27  Aligned_cols=97  Identities=14%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC--CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~--~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      |.||+|+||+|.||+-+...|+..+  ...+++++......+.........  ..+..   ..+ .++++++|++|++.+
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~~---~~~-~~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-LEALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCEE---TTC-HHHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeeec---ccc-hhhhhcCcEEEEecC
Confidence            4599999999999999997666554  357888887654222111111111  11111   123 356899999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                                      ..+.+++++.+.+.+.+++|  +.|..
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~V--ID~Ss   99 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYW--IDAAS   99 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSS
T ss_pred             ----------------chHHHHhhHHHHhcCCCeec--ccCCc
Confidence                            45667777777766666655  55554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.53  E-value=0.00015  Score=60.53  Aligned_cols=101  Identities=16%  Similarity=0.230  Sum_probs=59.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC--------------CCceEEEEecCCcccccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------------TRSEVAGYMGNDQLGQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~~al   94 (340)
                      |||+|||. |+||..+|..+. .++  +++.||+++.  ....|....              ....+...   ++...+.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~--~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~---~~~~~~~   71 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKAT---LDSKAAY   71 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE---SCHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHH--HHHHHhhcccccchhhHHHHhhhhhhhhhcc---chhhhhh
Confidence            79999997 999999987664 577  9999999861  111111100              11233332   3345778


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM  143 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv  143 (340)
                      .++|+|+++...|......-     .....+....+.+....+...+++
T Consensus        72 ~~~~ii~v~vpt~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~iii  115 (196)
T d1dlja2          72 KEAELVIIATPTNYNSRINY-----FDTQHVETVIKEVLSVNSHATLII  115 (196)
T ss_dssp             HHCSEEEECCCCCEETTTTE-----ECCHHHHHHHHHHHHHCSSCEEEE
T ss_pred             hccccccccCCccccccCCC-----cceeEEeehhhhhhhcccceeEEe
Confidence            99999999866553221110     112334445555555666665543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00011  Score=65.11  Aligned_cols=157  Identities=11%  Similarity=0.094  Sum_probs=90.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccc--cCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA--LEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a--l~~aDiVi~~ag~  106 (340)
                      +||.|+||+|++|++++..|+..++  ++++.|....    .|+.+.            ..+.+.  -.+.|+|++.++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~------------~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDS------------RAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCH------------HHHHHHHhhcCCCEEEEcchh
Confidence            4999999999999999999998887  6667765431    011110            001111  1357889998754


Q ss_pred             CCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC------CccHHHHHHHHHHhCCCCCCceEeccchh
Q 019519          107 PRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV------NSTVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (340)
Q Consensus       107 ~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~------d~~t~~~~~~~~~sg~~~~~kviG~~~ld  177 (340)
                      ....   .....+++..|+.....+++.+.+++-.-+|..-|.-+      ..+++-.   .......+++..+|.+-+.
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~---~~~~~~~~~~~~Y~~sK~~  141 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESE---LLQGTLEPTNEPYAIAKIA  141 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGG---TTSSCCCGGGHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCc---cccCCCCCCCCHHHHHHHH
Confidence            3111   12456677889999999999999886554443322111      0011000   0000001223346666555


Q ss_pred             HHHHHHHHHHHcCCCCCCCc-eeEEEecCC
Q 019519          178 VVRAKTFYAGKANVNVAEVN-VPVVGGHAG  206 (340)
Q Consensus       178 ~~R~~~~la~~l~v~~~~v~-~~v~G~hg~  206 (340)
                      ..++...+++..|++..-++ ..++|.++.
T Consensus       142 ~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         142 GIKLCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            55666666677787766666 457787653

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=0.00014  Score=64.48  Aligned_cols=53  Identities=13%  Similarity=0.021  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecCCCCC
Q 019519          257 YAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLS  313 (340)
Q Consensus       257 ~a~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~~~L~  313 (340)
                      ..++++|+||.+|++   .++.+++ ++|.+   |+|.+++|||+|+++|+.++ .+++++
T Consensus       153 e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~-~vg~~~  209 (278)
T d1vjta2         153 EQHIPFINAIANNKR---VRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHRE-KVEPDL  209 (278)
T ss_dssp             CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEEC-CCCSCC
T ss_pred             HHHHHHHHHHhCCCC---eEEEEECCCCCcCCCCCchhheEeEEEEeCCceeee-ecCCCC
Confidence            556899999999975   3444554 67876   89999999999999999996 455443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.51  E-value=0.00019  Score=55.99  Aligned_cols=98  Identities=19%  Similarity=0.220  Sum_probs=59.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcc---c-cccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL---G-QALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~-~al~~aDiVi~~a  104 (340)
                      |||.|+|+ |.+|+.++..|...++  +++++|.++..  +.++.......-+.+  +.+|.   . ..+++||.++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~--~~~~~~~~~~~vi~G--d~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEIDALVING--DCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHCSSEEEES--CTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhh--hhhhhhhhhhhhccC--cccchhhhhhcChhhhhhhcccC
Confidence            79999998 9999999999998888  99999998621  112221111111221  11221   1 2368999999874


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ...           ..|+.+    +...++++++-++..+.||.
T Consensus        74 ~~d-----------~~N~~~----~~~~k~~~~~~iI~~~~~~~  102 (132)
T d1lssa_          74 GKE-----------EVNLMS----SLLAKSYGINKTIARISEIE  102 (132)
T ss_dssp             SCH-----------HHHHHH----HHHHHHTTCCCEEEECSSTT
T ss_pred             CcH-----------HHHHHH----HHHHHHcCCceEEEEecCHH
Confidence            221           345422    22344567776666666665

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.49  E-value=0.00013  Score=59.91  Aligned_cols=74  Identities=15%  Similarity=0.259  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHH--HHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .|||+|||. |.+|+.++..|+..++  +|..||+++.+.  ...........+.........++...+.+++.++...
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            389999998 9999999999999998  999999875222  2222122222223333221123334556777766654

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.47  E-value=2.8e-05  Score=68.10  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~ag~  106 (340)
                      |||.|+||+|+||++++..|...+   +++.+|.+... ...|+.            ...++++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~------------~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFS------------NPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTT------------CHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCC------------CHHHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999998887766   46666665411 000111            0112234454  45999999986


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       107 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ...  ...........|......+.+..++.+  .+++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhccc--ccccccc
Confidence            421  134456667888888888888887664  3445443

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.00024  Score=63.78  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=46.9

Q ss_pred             HHHHHHHHHcCCCCCCcEEEeee-eeCCC---CCccEEEEeEEEcCCceEEEecC-CCCCHHHHH-HHHH
Q 019519          259 GAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGL-GPLSDFEQE-GLEK  322 (340)
Q Consensus       259 ~~~li~ai~~~~~~~~~v~~~~~-~~g~~---~~~~~~svP~~ig~~Gv~~i~~~-~~L~~~E~~-~l~~  322 (340)
                      ++++|.||.+|.+.   ++.+++ ++|.+   |+|.+++|||+|+++|+.++ .+ ++||+..+. +++.
T Consensus       184 a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~-~v~~~lP~~~~~gl~~~  249 (308)
T d1obba2         184 HIPFIDALLNDNKA---RFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPE-KIEPPLPDRVVKYYLRP  249 (308)
T ss_dssp             HHHHHHHHHHCCCE---EEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEEC-CCSSCCCHHHHHHTHHH
T ss_pred             HHHHHHHHHcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEeCCceeee-ecCCCCChHHHHHHHHH
Confidence            79999999999753   444554 67775   89999999999999999997 44 579987654 5544

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.45  E-value=4.5e-05  Score=64.14  Aligned_cols=110  Identities=17%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |.+|.|+||+|++|++++..|+..++  ++.++|.........++....  ..+.... ...++.++++++|.||++++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~--~v~v~~~~R~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSD--KFVAKGLVRSAQGKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTT--TCEEEEEESCHHHHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--cEEEEEEcCCHHHHHhccCCc--EEEEeeeccccccccccccceeeEEEEee
Confidence            56999999999999999999998886  334444322122222222211  1122111 113445778999999998864


Q ss_pred             CCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 019519          107 PRKP---------------GMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (340)
Q Consensus       107 ~~~~---------------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  141 (340)
                      ....               ..........|....+.+.............
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T d2q46a1          79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIV  128 (252)
T ss_dssp             CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEE
T ss_pred             ccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccc
Confidence            2110               0112233455667777777777766654433

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.39  E-value=0.0002  Score=57.28  Aligned_cols=110  Identities=14%  Similarity=0.176  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCC--CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~--~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      |||+|+||+|.+|+-+...|....  ...++.++......+...++..  ....+..   ..| .+.++++|+|+++.. 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~--~~~~~~~---~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGK--DAGMLHD---AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSS--CCCBCEE---TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCC--cceeeec---ccc-hhhhccccEEEEecC-
Confidence            799999999999999997666433  2468888765542222111110  0111111   123 366899999999852 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccc
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~  175 (340)
                                     -...+++++.+.+.+.+++|  +.|..|         +|    ++++-++++.-
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsd---------fR----~~~dvpl~lPE  112 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAAST---------LR----MDKEAIITLDP  112 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSST---------TT----TCTTEEEECHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCcc---------cc----ccCCceEEeCC
Confidence                           25566888888877777765  566654         33    55666777753

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00013  Score=65.79  Aligned_cols=107  Identities=19%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---------cHHH--HHHHhcCCCCceEEEEec-CCc---cccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---------TPGV--AADVGHINTRSEVAGYMG-NDQ---LGQA   93 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---------~~~~--~~dl~~~~~~~~v~~~~~-~~d---~~~a   93 (340)
                      .||.|+||+|+||++++..|+..++  +|+.+|...         ....  ...+..    .++..... -.|   ++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~l~~~   76 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELTG----RSVEFEEMDILDQGALQRL   76 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHHT----CCCEEEECCTTCHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhcC----CCcEEEEeecccccccccc
Confidence            4899999999999999999998887  899998521         1111  111221    12222221 122   2344


Q ss_pred             cCCCC--EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 019519           94 LEDSD--VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (340)
Q Consensus        94 l~~aD--iVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  141 (340)
                      +.+.|  +|+++|+.+...  -....+.+..|+.....+...+++++.+-++
T Consensus        77 ~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          77 FKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             HHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence            54444  677788765211  1235567788999999999999988765443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.35  E-value=0.00036  Score=57.19  Aligned_cols=97  Identities=14%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCC-CCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .+|+|||. |.+|+.++..|+..++  +|+.||+++.+.  .++.... ............++.+++.++|.++++.-  
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~--   75 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK--   75 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC--
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHhccccccccchhhhhhhhhhhcccceEEEecC--
Confidence            48999998 9999999999999998  999999886322  2332221 11111221112345677899999999752  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  145 (340)
                                   +.+.+.++...+.... |..++|..|
T Consensus        76 -------------~~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          76 -------------AGQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             -------------TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -------------chHHHHHHHHHHHhccccCcEEEecC
Confidence                         1233444445555554 555665554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.35  E-value=0.00016  Score=57.88  Aligned_cols=65  Identities=18%  Similarity=0.179  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||++||+ |.+|++++..|...+. .++.++|.++..  ..++....   .+...   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~~--~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChhH--HHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            79999998 9999999997776552 399999987522  12232211   12322   333 5688999999985

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.32  E-value=0.0002  Score=59.54  Aligned_cols=80  Identities=18%  Similarity=0.190  Sum_probs=54.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEE-ecCCccccccCCCCEEEE
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVi~  102 (340)
                      .+.++|.|+||+|.+|..++..|++.|.  +|+++|++.  ....+..+.......-+... +...+.++++.++|+||.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            3457999999999999999999999987  899999986  22223333221110111121 122456678899999999


Q ss_pred             cCCCC
Q 019519          103 PAGVP  107 (340)
Q Consensus       103 ~ag~~  107 (340)
                      .+|.+
T Consensus        99 ~Ag~g  103 (191)
T d1luaa1          99 AGAIG  103 (191)
T ss_dssp             CCCTT
T ss_pred             cCccc
Confidence            98864

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00022  Score=64.08  Aligned_cols=166  Identities=10%  Similarity=0.013  Sum_probs=93.8

Q ss_pred             CeE-EEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc---HHHHHHHhcC---CCCceEEEEecC-Cc---ccccc--C
Q 019519           29 RKV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI---NTRSEVAGYMGN-DQ---LGQAL--E   95 (340)
Q Consensus        29 ~KI-~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~---~~~~~dl~~~---~~~~~v~~~~~~-~d---~~~al--~   95 (340)
                      +|| .|+||+|++|++++..|+..|+  +|+-+|....   .+...++...   ....+++...+. .|   +..++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            389 6999999999999999999998  9999998541   1111111111   111234443211 11   12233  3


Q ss_pred             CCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEec------CCCC-ccHHHHHHHHHHhCC
Q 019519           96 DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMIS------NPVN-STVPIAAEVFKKAGT  164 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~t------NP~d-~~t~~~~~~~~~sg~  164 (340)
                      +.|+|++.++.....  -....+++..|+.....+.+.+++++.  ...+|.+|      +|-+ .++       ..+. 
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~-------E~~~-  150 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQK-------ETTP-  150 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBC-------TTSC-
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCC-------CCCC-
Confidence            567888877654211  123456678899999999999998763  24565554      2211 121       1222 


Q ss_pred             CCCCceEeccchhHHHHHHHHHHHcCCCCCCCc-eeEEEec
Q 019519          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (340)
Q Consensus       165 ~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (340)
                      +.|...+|.+-+...++....++..+++...++ ..+.|..
T Consensus       151 ~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         151 FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            445566777655555555555666676544443 2355643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.25  E-value=0.00014  Score=58.18  Aligned_cols=64  Identities=17%  Similarity=0.196  Sum_probs=45.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |||+|||. |.+|+.++..|...++  ++..+|......... .....   .+..     +..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~~~~-----~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---GVTE-----TSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---TCEE-----CCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---cccc-----cHHHHHhhcCeEEEEe
Confidence            79999998 9999999999999998  899998765322111 11111   1221     2357899999999984

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0023  Score=55.41  Aligned_cols=119  Identities=20%  Similarity=0.252  Sum_probs=76.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|.++  .+..+.++.......++..+. +-+|.          .+.+
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45788999999999999999999998  899999876  344455565544333444432 11221          1234


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HHHHHHH----HHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNIN----AGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~-~--g~~r---~~~~~~N----~~i~~~i~~~i~~~~-p~a~viv~tNP~  148 (340)
                      ..-|++|..||.... +  ..+.   ...+..|    .-..+.+++.+.+.. ..+.||+++...
T Consensus        88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~  152 (257)
T d1xg5a_          88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMS  152 (257)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGG
T ss_pred             CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechH
Confidence            678999999986432 2  2222   2233444    455667777777665 467888776544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.23  E-value=0.00035  Score=54.30  Aligned_cols=70  Identities=19%  Similarity=0.259  Sum_probs=45.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCcccc-ccCCCCEEEEcCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQ-ALEDSDVVIIPAG  105 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~-al~~aDiVi~~ag  105 (340)
                      |++|+|+ |.+|+.++..|...+.  +++++|.++.  .+.++.+... .-+.+.. ...-+++ .+++||.||++.+
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~--~~~~~~~~~~-~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYAT-HAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHHTTTTCS-EEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHH--HHHHHHHhCC-cceeeecccchhhhccCCccccEEEEEcC
Confidence            7899998 9999999999999988  8999999852  2233443321 1122111 0111222 2689999888753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.22  E-value=0.00013  Score=63.22  Aligned_cols=90  Identities=21%  Similarity=0.234  Sum_probs=59.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi~~ag~  106 (340)
                      |||.|+||+|++|++++..|...++  +|+.+|..+.     |+.+.            .++++.++  +.|+||++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~------------~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNV------------LAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCH------------HHHHHHHHHcCCCEEEeeccc
Confidence            8999999999999999999998888  9999987541     11110            11223343  67999998875


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC
Q 019519          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP  137 (340)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (340)
                      ....  ..........|......+.........
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             cccccccccchhhcccccccccccccccccccc
Confidence            4211  122344556677777777666665543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.19  E-value=0.00039  Score=56.61  Aligned_cols=99  Identities=23%  Similarity=0.303  Sum_probs=62.2

Q ss_pred             hhhhhhhhhccCccccC-CCCCC--CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCc
Q 019519            4 SVLRSVKTLAKPAGARG-YSSES--VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRS   79 (340)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~   79 (340)
                      +++-.-+-+.++.|-+. -.+..  .++-||+|+|| |.+|.+-+...+.-+-  ++..+|.+. ...+..+.....  .
T Consensus         5 av~~ga~~L~~~~gG~G~Llgg~~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~~--~   79 (168)
T d1pjca1           5 SVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSR--V   79 (168)
T ss_dssp             HHHHHHHHTSGGGTSCCCCTTCBTTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG--S
T ss_pred             HHHHHHHHhhhhcCCcEEEecCCCCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhccc--c
Confidence            44444555666655333 22111  46789999998 9999998887776665  899999986 222222221111  1


Q ss_pred             eEEEEecCCccccccCCCCEEEEcCCCCC
Q 019519           80 EVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        80 ~v~~~~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                      ... ......+++.+++||+||-++-.|-
T Consensus        80 ~~~-~~~~~~l~~~~~~aDivI~aalipG  107 (168)
T d1pjca1          80 ELL-YSNSAEIETAVAEADLLIGAVLVPG  107 (168)
T ss_dssp             EEE-ECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred             eee-hhhhhhHHHhhccCcEEEEeeecCC
Confidence            222 2223456788999999999997764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0011  Score=57.53  Aligned_cols=106  Identities=12%  Similarity=0.109  Sum_probs=68.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC---CccccccCCCCEEEEcCCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN---DQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~---~d~~~al~~aDiVi~~ag~~  107 (340)
                      |.|+||+||+|++++..|+..|+ .+|+.+|..........+.+... ..+......   ......+.++++|++.|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNI-ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCC-SEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccch-hhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999998873 37888884331111112222221 111110000   00123467899999998876


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (340)
                      .............|......+.+.....+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            6666667777777888888888888877654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.10  E-value=0.0014  Score=52.00  Aligned_cols=54  Identities=20%  Similarity=0.366  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .+.||+|||+.|.+|+.++..|...++  ++..+|++...                      ..+..++++|+++...
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~   61 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSV   61 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECS
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhcccccccc
Confidence            356999999449999999999999998  99999986421                      1134467888888875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.04  E-value=0.00031  Score=61.45  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--c---HHH-HHHHhcCCCCceEE-EE-ecCCccccccCCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T---PGV-AADVGHINTRSEVA-GY-MGNDQLGQALEDSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~---~~~-~~dl~~~~~~~~v~-~~-~~~~d~~~al~~aD   98 (340)
                      +++||.|+||+|++|++++..|+..|+  +|+.++.+.  .   +.. ...+.+..  ..+. .. ....++.+++++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~--v~~v~~d~~d~~~~~~~~~~~~   77 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLG--AKLIEASLDDHQRLVDALKQVD   77 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTT--CEEECCCSSCHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhccCC--cEEEEeecccchhhhhhccCcc
Confidence            457999999999999999999998887  888888765  1   111 11222221  1111 10 01123456789999


Q ss_pred             EEEEcCCC
Q 019519           99 VVIIPAGV  106 (340)
Q Consensus        99 iVi~~ag~  106 (340)
                      .++.+++.
T Consensus        78 ~~~~~~~~   85 (312)
T d1qyda_          78 VVISALAG   85 (312)
T ss_dssp             EEEECCCC
T ss_pred             hhhhhhhh
Confidence            99997753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.98  E-value=0.00087  Score=55.23  Aligned_cols=102  Identities=19%  Similarity=0.197  Sum_probs=59.6

Q ss_pred             hhhhhhhhhccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCc---
Q 019519            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRS---   79 (340)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~---   79 (340)
                      +|+..-..+.|+.|----+--..++-||+|+|| |.+|.+-+...+.-|-  .+..+|++. ...+..++.......   
T Consensus         5 av~~aa~~l~k~~~~l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~   81 (183)
T d1l7da1           5 AVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDE   81 (183)
T ss_dssp             HHHHHHHHCSSCSSCEEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC---
T ss_pred             HHHHHHHHhhhhcCCcccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEecc
Confidence            455555566665443221111256779999998 9999988877775554  899999987 344443332211100   


Q ss_pred             ---eEEE---E----------ecCCccccccCCCCEEEEcCCCCC
Q 019519           80 ---EVAG---Y----------MGNDQLGQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        80 ---~v~~---~----------~~~~d~~~al~~aDiVi~~ag~~~  108 (340)
                         ..+.   +          .....+.+.+++||+||.++-.|-
T Consensus        82 ~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG  126 (183)
T d1l7da1          82 AMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPG  126 (183)
T ss_dssp             --------------------CCHHHHHHHHHTTCSEEEECCCCTT
T ss_pred             ccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCC
Confidence               0000   0          000123345899999999987763

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.001  Score=57.37  Aligned_cols=155  Identities=14%  Similarity=0.159  Sum_probs=87.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCc------cccccCCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQ------LGQALEDSD   98 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d------~~~al~~aD   98 (340)
                      +.+++.|+||++-+|..++..|+..|.  +|++.|+++.  +....++....   .+..  +-+|      ..+.+..-|
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~---~~~~--Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE---PVCV--DLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEEC--CTTCHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCe---EEEE--eCCCHHHHHHHHHHhCCce
Confidence            456899999999999999999999997  9999998762  22333332211   1111  1111      123456889


Q ss_pred             EEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 019519           99 VVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (340)
Q Consensus        99 iVi~~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (340)
                      ++|..||.....   ..+..   ..+..|+.    ..+.+++.+.+....+.|++++.-....           + .|..
T Consensus        79 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~-----------~-~~~~  146 (244)
T d1pr9a_          79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR-----------A-VTNH  146 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------C-CTTB
T ss_pred             EEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc-----------c-ccch
Confidence            999999875422   22322   23344443    5566666655555667777776433211           1 2222


Q ss_pred             ceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       169 kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      -.++.+.-....+-+.+|..++  +..|++-.+-
T Consensus       147 ~~Y~asKaal~~lt~~lA~el~--~~gIrvN~I~  178 (244)
T d1pr9a_         147 SVYCSTKGALDMLTKVMALELG--PHKIRVNAVN  178 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hhhhhhHHHHHHHHHHHHHHhC--CCcEEEEEEe
Confidence            2222221112345667777764  5666655553

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.88  E-value=0.00043  Score=59.90  Aligned_cols=75  Identities=21%  Similarity=0.215  Sum_probs=48.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc----HHHHH---HHhcCCCCceEEE-Ee-cCCccccccCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAA---DVGHINTRSEVAG-YM-GNDQLGQALEDSD   98 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~----~~~~~---dl~~~~~~~~v~~-~~-~~~d~~~al~~aD   98 (340)
                      ++||.|+||+|++|++++..|+..|+  +|..++.+..    .....   .+....  ..+.. .. ...+..++++++|
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~   78 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASG--ANIVHGSIDDHASLVEAVKNVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTT--CEEECCCTTCHHHHHHHHHTCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhccCC--cEEEEeecccchhhhhhhhhce
Confidence            35999999999999999999999887  9999997651    11111   122111  11211 00 1122346678999


Q ss_pred             EEEEcCCC
Q 019519           99 VVIIPAGV  106 (340)
Q Consensus        99 iVi~~ag~  106 (340)
                      .|+..++.
T Consensus        79 ~vi~~~~~   86 (307)
T d1qyca_          79 VVISTVGS   86 (307)
T ss_dssp             EEEECCCG
T ss_pred             eeeecccc
Confidence            99998754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.84  E-value=0.0064  Score=52.38  Aligned_cols=115  Identities=23%  Similarity=0.313  Sum_probs=72.4

Q ss_pred             eE-EEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------ccccC
Q 019519           30 KV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (340)
Q Consensus        30 KI-~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (340)
                      || .|+||++-+|..++..|+..|.  .|++.|+++  .+..+.++.+...  ++..+. +-+|.          .+.+-
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            76 6779988999999999999997  899999986  3444455554332  222221 11221          12346


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .-|++|..||.....   ..+.   ...+..|+    ...+...+.+.+....+.|++++...
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~  140 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQA  140 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchh
Confidence            899999999864321   2232   22344454    44556666677777778777776443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.83  E-value=0.00058  Score=55.30  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHh
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVG   73 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~   73 (340)
                      |||+||||+|.+|+++|..|+..|+  +|++.++++  ....+.++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            7999996669999999999999998  999999886  233334444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.77  E-value=0.0098  Score=51.54  Aligned_cols=130  Identities=18%  Similarity=0.163  Sum_probs=80.0

Q ss_pred             ccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCC
Q 019519           13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GND   88 (340)
Q Consensus        13 ~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~   88 (340)
                      -.-+|.-+|.+.+.+.+++.|+||++-+|..++..|+..|.  +|++.|.+.   .+..+.++.....  ++.... +-+
T Consensus         3 ~~~~~~~~~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~   78 (272)
T d1g0oa_           3 DAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVG   78 (272)
T ss_dssp             TCCCSCSSGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTT
T ss_pred             CCCCCCCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCC
Confidence            34566666666666778999999999999999999999998  899999875   2233333433321  222221 112


Q ss_pred             c----------cccccCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519           89 Q----------LGQALEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus        89 d----------~~~al~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                      |          ..+.+-.-|++|..+|.....   ..+   ....+..|+.-...+.+.+..+- ..+.+++++.
T Consensus        79 ~~~~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s  153 (272)
T d1g0oa_          79 VVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  153 (272)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence            2          123346789999998865322   222   23345556666666666665554 3555555543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.76  E-value=0.00074  Score=60.13  Aligned_cols=167  Identities=10%  Similarity=-0.009  Sum_probs=90.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC----cH---HHHHHHhcCCCCceEEEEec-CCcc---cccc--C
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TP---GVAADVGHINTRSEVAGYMG-NDQL---GQAL--E   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~----~~---~~~~dl~~~~~~~~v~~~~~-~~d~---~~al--~   95 (340)
                      .|+.|+||+|++|++++..|+..|+  +|+.+|...    ..   ....+..... ...+..... -.+.   .+++  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVN-KALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhcc-ccceEEEEccccCHHHHHHHHhhh
Confidence            4889999999999999999999998  999999742    10   0001111111 122333221 1221   2222  4


Q ss_pred             CCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEecCCC------CccHHHHHHHHHHhC
Q 019519           96 DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISNPV------NSTVPIAAEVFKKAG  163 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~tNP~------d~~t~~~~~~~~~sg  163 (340)
                      +.|+|+++|+.....  ..........|......+...+++.+    ....++..+...      ...+       ....
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~-------E~~~  151 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQS-------ETTP  151 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBC-------TTSC
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCC-------CCCC
Confidence            679999999764322  12344566777777777777666432    223333322110      0111       1122


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCce-eEEEecCC
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAG  206 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~-~v~G~hg~  206 (340)
                       +.|...+|.+.+....+....++..+++...++. .+.|.+..
T Consensus       152 -~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         152 -FHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             -CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             -CCCcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence             3455666776555555656666777776555553 36776543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.75  E-value=0.007  Score=54.03  Aligned_cols=103  Identities=18%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-Cc----cccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d----~~~al~~aDiVi~  102 (340)
                      +++|+|+||+|++|++++..|+..++  +|+.+-.+........+....   .++...+. .|    +..+++++|.+++
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~---~v~~~~gD~~d~~~~~~~a~~~~~~~~~   77 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAFI   77 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhcccC---CCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence            46999999999999999999999887  888886654222223333221   23322211 12    3457889999888


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      .....   .       ..|....+.++....+.+-.-+++..|
T Consensus        78 ~~~~~---~-------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          78 NTTSQ---A-------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             CCCST---T-------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             ecccc---c-------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            64321   1       123444455666666665444554444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.65  E-value=0.0034  Score=50.15  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=46.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC---CccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN---DQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~---~d~~~al~~aDiVi~~a  104 (340)
                      .||.|+|| |.+|+++|..|...++  +|+++|.+..  .+.++...... ........   ....+.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQH-STPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCTT-EEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhcccc-cccccccccchhhhHhhhhccceeEeec
Confidence            49999998 9999999999999988  9999998753  33344443221 11111111   12345578889888764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.60  E-value=0.011  Score=50.61  Aligned_cols=117  Identities=14%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------ccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   93 (340)
                      +.+.+.|+||++-+|..++..|+..|.  .|++.|.++  .+..+.++...   .++..+. +-+|.          .+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788889999999999999999997  899999876  23333344321   1333322 11221          123


Q ss_pred             cCCCCEEEEcCCCCCC-C--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           94 LEDSDVVIIPAGVPRK-P--GMTRDD---LFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~-~--g~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      +-.-|++|..||.... +  ..+..+   .+..|+    ...+..++.+.+....+.||+++...
T Consensus        80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~  144 (251)
T d1zk4a1          80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIE  144 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGG
T ss_pred             hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccc
Confidence            4578999999986432 1  233332   334444    45666666676665566888776543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.0032  Score=53.99  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCcc------ccccCCCCE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQL------GQALEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~------~~al~~aDi   99 (340)
                      .+++.|+||++-+|..++..|+..|.  +|++.|.++  ......++....   .+..  +-+|.      -+.+..-|+
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~---~~~~--Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVCV--DLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEEC--CTTCHHHHHHHHTTCCCCSE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEEE--eCCCHHHHHHHHHHcCCCeE
Confidence            46889999999999999999999997  999999875  222223332211   1111  11121      123468899


Q ss_pred             EEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519          100 VIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       100 Vi~~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +|..||.....   ..+..   ..+..|+.    +.+...+.+.+....+.+|+++..
T Consensus        78 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~  135 (242)
T d1cyda_          78 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSM  135 (242)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             EEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchh
Confidence            99999875322   22322   23344444    445556655555556777777654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.51  E-value=0.00086  Score=53.22  Aligned_cols=71  Identities=24%  Similarity=0.303  Sum_probs=45.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +|||+|+||+|.+|+-+...|.+.+ ...||.++-.....|...  ..  ....+....  .+ .+.+.++|+++++.+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~--~~~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GF--AESSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EE--TTEEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--ee--ccccchhcc--ch-hhhhccceEEEecCC
Confidence            6899999999999999998887544 356888886554222211  11  112233221  22 355789999999763

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.45  E-value=0.038  Score=47.98  Aligned_cols=95  Identities=12%  Similarity=0.100  Sum_probs=59.0

Q ss_pred             hhccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cC
Q 019519           11 TLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN   87 (340)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~   87 (340)
                      +|-+|..+.-.+.-+.+.+.+.|+||+|.+|..++..|+..|.  +|++.|.+.  ....+.++..... .++..+. +-
T Consensus         8 ~~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~   84 (294)
T d1w6ua_           8 KFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDV   84 (294)
T ss_dssp             HHSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCT
T ss_pred             hhcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecc
Confidence            4455555544333333457888999999999999999999997  999999986  2333444432211 1122211 11


Q ss_pred             Ccc----------ccccCCCCEEEEcCCCCC
Q 019519           88 DQL----------GQALEDSDVVIIPAGVPR  108 (340)
Q Consensus        88 ~d~----------~~al~~aDiVi~~ag~~~  108 (340)
                      +|.          .+.+...|++|..+|...
T Consensus        85 ~~~~~v~~~~~~~~~~~g~iDilvnnAg~~~  115 (294)
T d1w6ua_          85 RDPDMVQNTVSELIKVAGHPNIVINNAAGNF  115 (294)
T ss_dssp             TCHHHHHHHHHHHHHHTCSCSEEEECCCCCC
T ss_pred             cChHHHHHHhhhhhhhccccchhhhhhhhcc
Confidence            221          123467899999988643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.30  E-value=0.0022  Score=51.55  Aligned_cols=72  Identities=24%  Similarity=0.358  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ..||.|||+ |.+|..++..|...+. .++.++.....++  .++.... ......+   +++.+++.++|+||.+.+.|
T Consensus        24 ~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka--~~l~~~~-~~~~~~~---~~~~~~l~~~Divi~atss~   95 (159)
T d1gpja2          24 DKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERA--VELARDL-GGEAVRF---DELVDHLARSDVVVSATAAP   95 (159)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHH--HHHHHHH-TCEECCG---GGHHHHHHTCSEEEECCSSS
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHH--HHHHHhh-hcccccc---hhHHHHhccCCEEEEecCCC
Confidence            459999998 9999999998887764 5799998754222  2222211 1122222   46778899999999986654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.29  E-value=0.034  Score=41.38  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +..||.|+|+ |.+|...+..|+..+.  ++.+++........ .+.+..   +++......+ ++.+.++++|+.+.+
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~-~~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at~   81 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQFT-VWANEG---MLTLVEGPFD-ETLLDSCWLAIAATD   81 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHHH-HHHTTT---SCEEEESSCC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHHH-HHHhcC---CceeeccCCC-HHHhCCCcEEeecCC
Confidence            3569999998 9999999999998886  89999876543332 233222   2232222222 467899999998753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.27  E-value=0.022  Score=48.72  Aligned_cols=115  Identities=16%  Similarity=0.193  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------ccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   93 (340)
                      +.+.+.|+||++.+|..++..|+..|.  .|++.|+++  ....+.++.+.. ..++..+. +-+|.          .+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346888999999999999999999998  899999886  233333443221 11222221 11111          122


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +-.-|++|..||.....   ..+..   ..+..|+.    ..+..++.+.+. ..+.+|+++
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~i~  141 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIG  141 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-ccccccccc
Confidence            45789999999875322   12322   23444544    555555555544 345566554

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.26  E-value=0.00098  Score=54.77  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=43.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHH-HHh-cCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVG-HINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~-dl~-~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+||+|+||+|.+|.-+...|...+.+ ||..+=-+...|... ++. +......+..    .+.++..+++|+|+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~----~~~~~~~~~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILSE----FDPEKVSKNCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCBC----CCHHHHHHHCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhccccccc----cCHhHhccccceEEEcc
Confidence            689999999999999999988887754 555553333222211 111 1111112221    34445557899999875

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.25  E-value=0.0028  Score=54.07  Aligned_cols=110  Identities=20%  Similarity=0.283  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC---CccccccCCCCEEEEc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN---DQLGQALEDSDVVIIP  103 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~---~d~~~al~~aDiVi~~  103 (340)
                      +.+++.|+||++-+|..++..|+..|.  +|++.|+++.  ...+..+     +......+   ....+.+..-|++|..
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~--~l~~~~~-----~~~~~Dv~~~~~~~~~~~g~iD~lVnn   73 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSGH-----RYVVCDLRKDLDLLFEKVKEVDILVLN   73 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTCS-----EEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH--HHHhcCC-----cEEEcchHHHHHHHHHHhCCCcEEEec
Confidence            356899999999999999999999997  9999998741  1111111     11110001   1123556789999999


Q ss_pred             CCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 019519          104 AGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus       104 ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      ||.+...   ..+..   ..+..|+.    ..+.+.+.+++. ..+.+|+++.
T Consensus        74 AG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~G~ii~i~S  125 (234)
T d1o5ia_          74 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITS  125 (234)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             ccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc-cccccccccc
Confidence            9976432   22322   22334443    566666666654 4455666553

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.25  E-value=0.022  Score=48.80  Aligned_cols=114  Identities=20%  Similarity=0.270  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---c-------ccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---G-------QAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  .+....++..     +...+. +-+|.   +       +.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            35788889999999999999999997  899999886  3344444432     121111 11121   1       223


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      -.-|++|..||.....   ..+.   ...+..|+    ...+.+++.+.+....+.||+++...
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~  141 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQA  141 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchh
Confidence            5789999999865322   2232   23344554    44556666666666667888776443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.041  Score=46.82  Aligned_cols=117  Identities=21%  Similarity=0.291  Sum_probs=73.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccc----------cccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG----------QALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al~   95 (340)
                      .-+.|+||++-+|..++..|++.|.  .|++.|+++  .+..+.++....  .++.... +-+|.+          +.+-
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            4677789988999999999999997  999999986  344455554332  2333222 222321          2356


Q ss_pred             CCCEEEEcCCCCCCCC--CCH----HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 019519           96 DSDVVIIPAGVPRKPG--MTR----DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g--~~r----~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (340)
                      ..|++|..+|......  ...    .+.+.-|    ....+.+.+.+.+. ..+.||+++.....
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGH  147 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-C
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchhc
Confidence            7999999998754332  122    2233333    45666777777655 46788888777654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0019  Score=46.94  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      +..||+|+|. |..|.+++..|...+.  ++.++|.+.......++.+ .  ..+..  +..+ ...+.++|+||.+-|+
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~-~--~~~~~--~~~~-~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE-A--VERHT--GSLN-DEWLMAADLIVASPGI   74 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT-T--SCEEE--SBCC-HHHHHHCSEEEECTTS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh-c--cceee--cccc-hhhhccCCEEEECCCC
Confidence            3469999998 9999999999998887  8999998652111111221 1  12222  1112 4567899999999988


Q ss_pred             CC
Q 019519          107 PR  108 (340)
Q Consensus       107 ~~  108 (340)
                      |.
T Consensus        75 ~~   76 (93)
T d2jfga1          75 AL   76 (93)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.18  E-value=0.011  Score=48.48  Aligned_cols=106  Identities=25%  Similarity=0.320  Sum_probs=65.9

Q ss_pred             CCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        21 ~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      +.+.....++|+|+|. |.+|+.++..+..-+.  +|..+|.........+..       +..    .++++.++.||+|
T Consensus        37 ~~~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv  102 (184)
T d1ygya1          37 FSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFI  102 (184)
T ss_dssp             CCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEE
T ss_pred             cccccccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEE
Confidence            3343445679999998 9999999988875554  999999765333322221       121    2457889999999


Q ss_pred             EEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHH
Q 019519          101 IIPAG-VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI  154 (340)
Q Consensus       101 i~~ag-~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~  154 (340)
                      ++..- .+...++       -|.       +.+....|++++||++--.=+-...
T Consensus       103 ~~~~Plt~~T~~l-------in~-------~~l~~mk~~a~lIN~sRG~iVde~a  143 (184)
T d1ygya1         103 SVHLPKTPETAGL-------IDK-------EALAKTKPGVIIVNAARGGLVDEAA  143 (184)
T ss_dssp             EECCCCSTTTTTC-------BCH-------HHHTTSCTTEEEEECSCTTSBCHHH
T ss_pred             EEcCCCCchhhhh-------hhH-------HHHhhhCCCceEEEecchhhhhhHH
Confidence            99742 2222232       121       2233345789999987554333333

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.16  E-value=0.039  Score=47.42  Aligned_cols=157  Identities=12%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---cc-------cc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QA   93 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a   93 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|.+.   .+..+.++....  .++..+. +-+|   .+       +.
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45788889999999999999999997  899999875   233344444332  1333221 1122   11       22


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg  163 (340)
                      +..-|++|..||.....   ..+..   ..+..|    ....+..++.+.+....+.|+++|......           +
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~-----------~  151 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-----------P  151 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-----------C
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc-----------c
Confidence            34789999999875322   23332   234444    445667777777666666677666443211           1


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                       .|..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       152 -~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~  187 (261)
T d1geea_         152 -WPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNIG  187 (261)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -CccccccccCCccchhhHHHHHHHhh--hhCcEEEEEe
Confidence             12111222221122345666777764  5667665553

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.13  E-value=0.01  Score=49.15  Aligned_cols=95  Identities=22%  Similarity=0.330  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ....+|+|+|. |.+|+.++..+..-+.  ++..||............       +..   ..++++.++.||+|++..-
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~~~~p  113 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCG  113 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEEEeec
Confidence            35579999998 9999999998886665  999999765222211111       121   1457788999999999753


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          106 V-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       106 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      . +...++       -|.+       .+....|++++||++=-
T Consensus       114 lt~~T~~l-------i~~~-------~l~~mk~~a~lIN~sRG  142 (193)
T d1mx3a1         114 LNEHNHHL-------INDF-------TVKQMRQGAFLVNTARG  142 (193)
T ss_dssp             CCTTCTTS-------BSHH-------HHTTSCTTEEEEECSCT
T ss_pred             ccccchhh-------hhHH-------HHhccCCCCeEEecCCc
Confidence            2 222232       1211       13334578999988654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.12  E-value=0.0067  Score=48.94  Aligned_cols=66  Identities=20%  Similarity=0.399  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |+++||+|+|+ |.+|+.++..+...+-+.-+.++|.+...         ........   ..+..+...+.|+|+++.
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~~---~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVFD---VADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEEE---GGGGGGTTTTCSEEEECS
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------cccccccc---chhhhhhccccceEEEeC
Confidence            56789999997 99999988888776544445577765411         11122332   245567788999999975

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.12  E-value=0.026  Score=48.43  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------ccc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   93 (340)
                      +.+.+.|+||++-+|..++..|+..|.  +|++.|.++  ....+.++.... ..++..+. +-+|.          .+.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            356888899988999999999999997  899999986  233333342211 11222221 11221          123


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      +-.-|++|..||.....   ..+..   ..+..|+    ...+.+++.+.+....+.+++.+.
T Consensus        85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            45799999998864322   22322   2334454    455667777766666776666543

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.07  E-value=0.012  Score=47.94  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=42.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC---CCcHHHHHHHhc--CC--CCceEEEEecCCccccccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI---ANTPGVAADVGH--IN--TRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~---~~~~~~~~dl~~--~~--~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      |+||+|+||+|++|.-+...|...+.+ ||.-+-.   ....+....-.+  ..  ....+...   .+......++|+|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            789999999999999999999888653 4443321   111111111111  11  11223322   2334556899999


Q ss_pred             EEcC
Q 019519          101 IIPA  104 (340)
Q Consensus       101 i~~a  104 (340)
                      +++.
T Consensus        77 f~al   80 (179)
T d2g17a1          77 FLAT   80 (179)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            9985

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.05  E-value=0.042  Score=47.13  Aligned_cols=118  Identities=19%  Similarity=0.252  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccc----------ccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG----------QAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+....++.......++.... +-+|.+          +.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            35788889989999999999999997  999999886  233333333222222333321 112211          224


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRK--P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~--~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      -.-|++|..||....  +  ..+..   ..+..|+.    ..+.+.+.+++. ..+.||+++...
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~  145 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASVG  145 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGG
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh-cCCCCcccccHh
Confidence            579999999986422  2  23322   23444544    445555555554 456677765443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.026  Score=48.28  Aligned_cols=116  Identities=19%  Similarity=0.139  Sum_probs=72.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccc----------cccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG----------QALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al~   95 (340)
                      +.+.|+||++-+|..++..|+..|.  +|++.|+++  ......++.......++.... +-+|.+          +.+-
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4677889999999999999999997  999999986  233344554432222333322 112211          2235


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHhC--CCcEEEEecCCC
Q 019519           96 DSDVVIIPAGVPRKPGMTRDDLFNINA----GIVKDLCSAIAKYC--PNAIVNMISNPV  148 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g~~r~~~~~~N~----~i~~~i~~~i~~~~--p~a~viv~tNP~  148 (340)
                      .-|++|..||.....  +..+.+..|+    ...+...+.+.+..  ..+.||+++...
T Consensus        82 ~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~  138 (254)
T d2gdza1          82 RLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  138 (254)
T ss_dssp             CCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence            789999999875432  3334444444    45666666665543  347788776443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.02  E-value=0.024  Score=48.70  Aligned_cols=156  Identities=17%  Similarity=0.201  Sum_probs=89.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+....++.....  ++..+. +-+|.          .+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35788889989999999999999997  899999886  3444445554332  233322 11121          1334


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 019519           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg  163 (340)
                      -.-|++|..+|....  +  ..+.   ...+..|+.    ..+...+.+.+. ..+.||+++....           ..+
T Consensus        81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~-----------~~~  148 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAG-----------VKG  148 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HSC
T ss_pred             CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhh-----------ccC
Confidence            589999999986432  2  2332   223344544    455556655544 5677777764321           122


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                       .|..-.++.+.-....|-+.+|..++  ++.|++-.+-
T Consensus       149 -~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  184 (260)
T d1zema1         149 -PPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAIS  184 (260)
T ss_dssp             -CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             -CcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEec
Confidence             22222333322222346677777774  5666655443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.97  E-value=0.0088  Score=49.69  Aligned_cols=72  Identities=25%  Similarity=0.335  Sum_probs=49.8

Q ss_pred             ccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCC
Q 019519           18 ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        18 ~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (340)
                      |.++.+......+|+|+|. |.+|+.++..+..-+.  +|..||.........   + ..  .      ..++.+.+++|
T Consensus        33 w~~~~g~el~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~~--~------~~~l~~~l~~s   97 (197)
T d1j4aa1          33 WAPTIGREVRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-GY--Y------VDSLDDLYKQA   97 (197)
T ss_dssp             CTTCCBCCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-TC--B------CSCHHHHHHHC
T ss_pred             cCCCcCccccCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-ee--e------ecccccccccc
Confidence            3444444445679999998 9999999999886666  999999765322111   1 11  1      13467889999


Q ss_pred             CEEEEcC
Q 019519           98 DVVIIPA  104 (340)
Q Consensus        98 DiVi~~a  104 (340)
                      |+|++..
T Consensus        98 Dii~~~~  104 (197)
T d1j4aa1          98 DVISLHV  104 (197)
T ss_dssp             SEEEECS
T ss_pred             ccccccC
Confidence            9999975

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.95  E-value=0.007  Score=51.05  Aligned_cols=85  Identities=19%  Similarity=0.166  Sum_probs=48.8

Q ss_pred             ccCccccCCCCCCC----CCCeEEEEcCCCChHH-HHHHHHHhCCCcceEE-EEeCCCc--HHHHHHHhcCCCCceEEEE
Q 019519           13 AKPAGARGYSSESV----PDRKVAVLGAAGGIGQ-PLALLMKLNPLVSRLA-LYDIANT--PGVAADVGHINTRSEVAGY   84 (340)
Q Consensus        13 ~~~~~~~~~~~~~~----~~~KI~IiGaaG~VG~-~~a~~l~~~~~~~el~-L~D~~~~--~~~~~dl~~~~~~~~v~~~   84 (340)
                      +.|.|++.++....    ++.||+|||+ |.+|. ++...+...+.+ +|+ ++|+++.  +..+.++. .. ...+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~~   89 (221)
T d1h6da1          14 TTPAGRPMPYAIRPMPEDRRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-VD-PRKIYDY   89 (221)
T ss_dssp             SSSCCCCCCCCSSCCCCCCCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-CC-GGGEECS
T ss_pred             CCCCCCcCccccCCCCCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-cc-ccccccc
Confidence            45677776443321    4579999997 99996 455555444333 555 8998752  22222221 11 1234433


Q ss_pred             ecCCccccccC--CCCEEEEcC
Q 019519           85 MGNDQLGQALE--DSDVVIIPA  104 (340)
Q Consensus        85 ~~~~d~~~al~--~aDiVi~~a  104 (340)
                         +|+++.++  +.|+|+++.
T Consensus        90 ---~d~~ell~~~~iD~V~I~t  108 (221)
T d1h6da1          90 ---SNFDKIAKDPKIDAVYIIL  108 (221)
T ss_dssp             ---SSGGGGGGCTTCCEEEECS
T ss_pred             ---Cchhhhcccccceeeeecc
Confidence               46666664  688898864

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.94  E-value=0.021  Score=46.76  Aligned_cols=95  Identities=16%  Similarity=0.172  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ...+|+|+|. |.+|..++..+..-+.  ++..+|... ......+..       +..   ..++++.+++||+|++..-
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~~p  109 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNCP  109 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECSC
T ss_pred             cccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhccc
Confidence            4579999998 9999999998886665  899999865 222222221       122   1456788999999999753


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          106 V-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       106 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      . +...++-       |.       +.+....+++++||++--.
T Consensus       110 lt~~T~~li-------~~-------~~l~~mk~ga~lIN~aRG~  139 (188)
T d2naca1         110 LHPETEHMI-------ND-------ETLKLFKRGAYIVNTARGK  139 (188)
T ss_dssp             CCTTTTTCB-------SH-------HHHTTSCTTEEEEECSCGG
T ss_pred             ccccchhhh-------HH-------HHHHhCCCCCEEEecCchh
Confidence            2 2222331       11       1233344788999887553

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.90  E-value=0.069  Score=45.32  Aligned_cols=116  Identities=19%  Similarity=0.306  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccc----------cccC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLG----------QALE   95 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al~   95 (340)
                      +.+.+.|+||++-+|..++..|+..|.  .|++.|+++.+.....+....  .++..+. +-+|.+          +.+-
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            445788889989999999999999998  899999987332222233222  1222222 112211          2245


Q ss_pred             CCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      .-|++|..||.....   ..+..   ..+..|+    ...+.+.+.+++.. .+.||++|.-
T Consensus        80 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~  140 (247)
T d2ew8a1          80 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTST  140 (247)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccc
Confidence            799999999874322   22322   2334444    45566666666653 5677777643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.89  E-value=0.052  Score=46.88  Aligned_cols=115  Identities=15%  Similarity=0.258  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCC-ceEEEEe-cCCcc---c-------cc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYM-GNDQL---G-------QA   93 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~-~~~d~---~-------~a   93 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  ++..+.++...... .++.... +-+|.   +       +.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999997  899999886  34444555543321 2343332 11221   1       12


Q ss_pred             cCCCCEEEEcCCCCCCCC-----CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 019519           94 LEDSDVVIIPAGVPRKPG-----MTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~g-----~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +-.-|++|..+|.....+     ++..   ..+..|+.    ..+...+.+.+ .+.+.+++.|
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~s  144 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSS  144 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchh
Confidence            346899999988643221     2322   23334444    55556666654 3566666554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.87  E-value=0.015  Score=47.99  Aligned_cols=96  Identities=20%  Similarity=0.226  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      ....+|+|+|. |.+|+.++..+..-+.  ++..+|............      ....   ..++++.++.||+|++..-
T Consensus        45 l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~------~~~~---~~~l~~ll~~sD~v~l~~p  112 (191)
T d1gdha1          45 LDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASY------QATF---HDSLDSLLSVSQFFSLNAP  112 (191)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHH------TCEE---CSSHHHHHHHCSEEEECCC
T ss_pred             ecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhcc------cccc---cCCHHHHHhhCCeEEecCC
Confidence            34579999998 9999999988876665  999999865211111111      1111   1356788999999998642


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          106 -VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       106 -~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       .+...++-       |.       +.+....|++++||++=-
T Consensus       113 lt~~T~~li-------~~-------~~l~~mk~~a~lIN~sRG  141 (191)
T d1gdha1         113 STPETRYFF-------NK-------ATIKSLPQGAIVVNTARG  141 (191)
T ss_dssp             CCTTTTTCB-------SH-------HHHTTSCTTEEEEECSCG
T ss_pred             CCchHhhee-------cH-------HHhhCcCCccEEEecCCc
Confidence             23222331       11       122334478999988654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.87  E-value=0.0039  Score=51.24  Aligned_cols=75  Identities=21%  Similarity=0.316  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHH-HHh-cCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVG-HINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~-dl~-~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      .+++||+|+||+|.+|+-+...|...+.+ ||..+-.+...|... +.. +.... ......  ....+.++++|+|+.+
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQ-DLPNLV--AVKDADFSNVDAVFCC   78 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTS-CCCCCB--CGGGCCGGGCSEEEEC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCcccccccccccc-ccccch--hhhhhhhcccceeeec
Confidence            35689999999999999999999887754 666665444222211 111 11110 111110  1123557899999987


Q ss_pred             C
Q 019519          104 A  104 (340)
Q Consensus       104 a  104 (340)
                      .
T Consensus        79 l   79 (183)
T d2cvoa1          79 L   79 (183)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.042  Score=47.02  Aligned_cols=114  Identities=16%  Similarity=0.250  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+..+.++.....  ++..+. +-+|.          .+.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788889999999999999999997  899999876  3334445554321  222221 11221          1234


Q ss_pred             CCCCEEEEcCCCCCCC--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRKP--GMTRDD---LFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~--g~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  146 (340)
                      -.-|++|..||.....  ..+..+   .+..|+    ...+.+++.+.+.. .+.+|+++.
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS  146 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS  146 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccc
Confidence            6899999999865322  333322   233444    45566666666654 455666553

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.82  E-value=0.022  Score=44.93  Aligned_cols=61  Identities=16%  Similarity=0.150  Sum_probs=38.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ||++||. |.+|+.++..|...++  .++ ++....+.  .++.....  .. .    .. .+.+.++|++|+..
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~~~--~~~~~~~~--~~-~----~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFEKA--LRHQEEFG--SE-A----VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTHHH--HHHHHHHC--CE-E----CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHHHH--HHHHHHcC--Cc-c----cc-cccccceeEEEecc
Confidence            8999998 9999999999998776  554 44433222  12221111  11 1    11 35677899998874

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.81  E-value=0.05  Score=46.37  Aligned_cols=154  Identities=17%  Similarity=0.243  Sum_probs=87.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------ccccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (340)
                      +.+.|+||++-+|..++..|+..|.  .|+++|+++  ++..+.++.....  ++..+. +-+|.          .+.+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4566779999999999999998887  899999876  3444555654332  233222 11221          12346


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~  165 (340)
                      .-|++|..+|.....   ..+.   ...+..|+    ...+..++.+.+. ..+.||++|....           ..+ .
T Consensus        87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~-----------~~~-~  153 (251)
T d2c07a1          87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVG-----------LTG-N  153 (251)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHH-----------HHC-C
T ss_pred             CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEECCHHh-----------cCC-C
Confidence            899999998864332   2222   22334444    4455666666655 4577777764331           112 2


Q ss_pred             CCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       166 ~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      |..-.++.+.-....|-+.+|..++  +..|++-.+
T Consensus       154 ~~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V  187 (251)
T d2c07a1         154 VGQANYSSSKAGVIGFTKSLAKELA--SRNITVNAI  187 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            3222333332222345667777763  455655444

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.78  E-value=0.049  Score=46.97  Aligned_cols=115  Identities=16%  Similarity=0.207  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEe-cCCcc----------ccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYM-GNDQL----------GQA   93 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d~----------~~a   93 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  .+....++..... ..++..+. +-+|.          .+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            35788889999999999999999997  999999886  3444555654432 22343332 11221          122


Q ss_pred             cCCCCEEEEcCCCCCCC-------CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 019519           94 LEDSDVVIIPAGVPRKP-------GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~-------g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      +-.-|++|..||.....       .++.   ...+..|+.    ..+...+.+++. +.++|++.|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            35789999999875321       1222   223344544    555666666543 455555544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.78  E-value=0.037  Score=47.65  Aligned_cols=115  Identities=18%  Similarity=0.275  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---cc-------cc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a   93 (340)
                      +.+.+.|+||++-+|..++..|+..|.  +|++.|+++  .+..+.++....   .+.... +-+|   .+       +.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788889999999999999999997  899999886  344444554322   222221 1122   11       22


Q ss_pred             cCCCCEEEEcCCCCC-CC----CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           94 LEDSDVVIIPAGVPR-KP----GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        94 l~~aDiVi~~ag~~~-~~----g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +-..|++|..||... .+    ..+..   ..+..|+.    ..+...+.+.+. ..+.+|+++..
T Consensus        80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~ii~iss~  144 (268)
T d2bgka1          80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA-KKGSIVFTASI  144 (268)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-TCEEEEEECCG
T ss_pred             cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc-CCCCccccccc
Confidence            357899999998632 21    22322   23344544    555566666544 35566666543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.73  E-value=0.031  Score=47.84  Aligned_cols=113  Identities=19%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             eE-EEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------ccccC
Q 019519           30 KV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (340)
Q Consensus        30 KI-~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (340)
                      || .|+||++-+|..++..|+..|.  +|++.|.++  .+..+.++.....  ++..+. +-+|.          .+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            56 6779989999999999999998  899999886  3444455554332  232222 11121          12345


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEecC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISN  146 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~tN  146 (340)
                      .-|++|..||.....   ..+.   ...+..|+.-...+++.+-.+     ...+.+++++.
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S  140 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS  140 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECC
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccc
Confidence            789999999875432   2232   344566766666666554332     23456666643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.71  E-value=0.034  Score=42.05  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+|+|||| |++|.-+|..|...+.  ++.|++..+
T Consensus        31 ~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          31 SRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            49999998 9999999999998887  999999865

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.68  E-value=0.0066  Score=49.77  Aligned_cols=90  Identities=20%  Similarity=0.279  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ..++|+|+|. |.+|..++..+..-+.  ++..+|....+        ..  ...     ..++++.+++||+|++..  
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~--------~~--~~~-----~~~l~ell~~sDiv~~~~--  100 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKE--------GP--WRF-----TNSLEEALREARAAVCAL--  100 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCC--------SS--SCC-----BSCSHHHHTTCSEEEECC--
T ss_pred             cCceEEEecc-ccccccceeeeecccc--ccccccccccc--------cc--eee-----eechhhhhhccchhhccc--
Confidence            4579999998 9999999988886666  99999975421        11  111     135678899999999964  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      |..+. ++. +  -|.       +.++...|++++|+++-.
T Consensus       101 pl~~~-t~~-l--i~~-------~~l~~mk~~ailIN~~RG  130 (181)
T d1qp8a1         101 PLNKH-TRG-L--VKY-------QHLALMAEDAVFVNVGRA  130 (181)
T ss_dssp             CCSTT-TTT-C--BCH-------HHHTTSCTTCEEEECSCG
T ss_pred             ccccc-ccc-c--ccc-------ceeeeccccceEEecccc
Confidence            33221 110 0  111       333444588999988743

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.62  E-value=0.003  Score=54.02  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--H---HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~---~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++.  +   ....|+.+..   .++...  ....+.+..-|++|.
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~~--~~~~~~~g~iDiLVn   79 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRAF--TAVEEHQGPVEVLVS   79 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHHH--HHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHHH--HHHHHhcCCceEEEe
Confidence            35888999988999999999999997  9999998761  1   0111111110   000000  111234567999999


Q ss_pred             cCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          103 PAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       103 ~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .||.....   ..+.   ...+..|+.    ..+.+++.+.+. ..+.||+++.-.
T Consensus        80 nAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Iv~isS~~  134 (237)
T d1uzma1          80 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVS  134 (237)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             eecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-CCCceEEEcchh
Confidence            99864321   2232   233444544    455556666554 456777776544

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.58  E-value=0.056  Score=47.45  Aligned_cols=160  Identities=14%  Similarity=0.188  Sum_probs=88.6

Q ss_pred             CCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-----------cHHHHHHHhcCCCCceEEEEe-cCC
Q 019519           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----------TPGVAADVGHINTRSEVAGYM-GND   88 (340)
Q Consensus        21 ~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-----------~~~~~~dl~~~~~~~~v~~~~-~~~   88 (340)
                      ||+.+  .+.+.|+||++-+|..++..|+..|.  .|++.|++.           ++....++.....  ...... ...
T Consensus         2 Pm~l~--gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~   75 (302)
T d1gz6a_           2 PLRFD--GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG--KAVANYDSVE   75 (302)
T ss_dssp             CCCCT--TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC--EEEEECCCGG
T ss_pred             CcCcC--CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccc--ccccccchHH
Confidence            55544  45778889999999999999999998  899999753           1122233332221  111111 111


Q ss_pred             ccc-------cccCCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 019519           89 QLG-------QALEDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (340)
Q Consensus        89 d~~-------~al~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~  151 (340)
                      +.+       +.+-.-|++|..||..+..   ..+.   ...+..|+    ...+...+.|++.. .+.||+++....  
T Consensus        76 ~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~--  152 (302)
T d1gz6a_          76 AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASG--  152 (302)
T ss_dssp             GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH--
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhh--
Confidence            111       2345799999999975422   2232   22334444    46666777776654 577777764321  


Q ss_pred             HHHHHHHHHHhCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          152 VPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       152 t~~~~~~~~~sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                               ..| .+..-.++.+.-.-..|-+.+|..++  +..|++-.+
T Consensus       153 ---------~~~-~~~~~~Y~asKaal~~lt~~la~E~~--~~gIrVN~I  190 (302)
T d1gz6a_         153 ---------IYG-NFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTI  190 (302)
T ss_dssp             ---------HHC-CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             ---------cCC-CCCcHHHHHHHHHHHHHHHHHHHHHh--ccCCceeee
Confidence                     122 23222333332222345666777763  556655444

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.55  E-value=0.014  Score=49.97  Aligned_cols=113  Identities=16%  Similarity=0.167  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  .+....++...     ...+. +-+|.          .+.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCc-----ceEEEeecCCHHHHHHHHHHHHHHh
Confidence            35778889999999999999999998  999999986  33344444322     11111 11121          1224


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ..-|++|..||.....   ..+.   ...+..|+.    ..+...+.+.+. +.+.||+++...
T Consensus        79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~  141 (244)
T d1nffa_          79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIE  141 (244)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEeccccc
Confidence            5789999999864321   2232   223444443    445555565554 467788776554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.081  Score=41.16  Aligned_cols=99  Identities=8%  Similarity=0.027  Sum_probs=60.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCcc----ccccCCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVi~  102 (340)
                      -+|.|+|. |.+|..++..|...+.  +++++|.++.  .....++..... .-+.+  +.+|.    ...+++||.||+
T Consensus         4 nHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~~-~vi~G--d~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDNA-DVIPG--DSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTTC-EEEES--CTTSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCCc-EEEEc--cCcchHHHHHhccccCCEEEE
Confidence            47999998 9999999999998887  8999998762  233333332221 11222  11221    234578999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCC
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPV  148 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNP~  148 (340)
                      +.+..           ..|+.+    +..+++.+|+..++.- .+|.
T Consensus        78 ~~~~d-----------~~n~~~----~~~~r~~~~~~~iia~~~~~~  109 (153)
T d1id1a_          78 LSDND-----------ADNAFV----VLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             CSSCH-----------HHHHHH----HHHHHHHTSSSCEEEECSSGG
T ss_pred             ccccH-----------HHHHHH----HHHHHHhCCCCceEEEEcCHH
Confidence            85321           245433    3456677888655544 4443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.065  Score=45.39  Aligned_cols=153  Identities=18%  Similarity=0.260  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  ++..+.++...     ...+. +-+|.          .+.+
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGAN-----GKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCC-----CcEEEEEecCHHHhhhhhhhhhccc
Confidence            34677889999999999999999998  899999886  33333344321     11111 11121          1234


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~  164 (340)
                      -.-|++|..||.....   ..+..   ..+..|+    ...+.+.+.+.+. ..+.||++|....           ..| 
T Consensus        77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~-----------~~~-  143 (243)
T d1q7ba_          77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK-RHGRIITIGSVVG-----------TMG-  143 (243)
T ss_dssp             CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HHC-
T ss_pred             CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc-CCCEeeeecchhh-----------cCC-
Confidence            5799999999865332   22222   2334444    4566666666654 3577777764321           122 


Q ss_pred             CCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       165 ~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      .|..-.++.+.-....|-+.+|..++  ++.|++-.+-
T Consensus       144 ~~~~~~Y~asKaal~~lt~~lA~ela--~~gIrVN~I~  179 (243)
T d1q7ba_         144 NGGQANYAAAKAGLIGFSKSLAREVA--SRGITVNVVA  179 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence            33222333332222346677777774  5666655443

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.45  E-value=0.11  Score=44.23  Aligned_cols=116  Identities=19%  Similarity=0.209  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC-CCcHHHHHHHhcCCCCceEEEEe-cCC-cc----------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPGVAADVGHINTRSEVAGYM-GND-QL----------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~-~~~~~~~~dl~~~~~~~~v~~~~-~~~-d~----------~~al   94 (340)
                      .+.|.|+||++-+|..+|..|+..|.  .+++++. ++......++........+.... +-+ +.          .+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            46899999988999999999999986  6666644 43222222332211112232222 111 11          1224


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHh--CCCcEEEEecCC
Q 019519           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAG----IVKDLCSAIAKY--CPNAIVNMISNP  147 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~--~p~a~viv~tNP  147 (340)
                      ...|++|..||...  ...-...+..|+.    ..+.+.+.+.+.  .+.+.||+++.-
T Consensus        83 g~iDilvnnAG~~~--~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~  139 (254)
T d1sbya1          83 KTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             SCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEeCCCCCC--HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEech
Confidence            67899999998653  2333445555554    667777777554  356778777543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.39  E-value=0.11  Score=44.43  Aligned_cols=115  Identities=12%  Similarity=0.049  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---c-------ccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---G-------QAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  .+....++....  .+..... +-+|.   +       +.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45788999989999999999999997  899999876  333344454332  1222221 11121   1       223


Q ss_pred             C-CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 019519           95 E-DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        95 ~-~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      . .-|++|..||.....   ..+.   ...+..|+.    +.+...+.+.+ ...+.||+++.-
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~G~Ii~isS~  146 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA-SERGNVVFISSV  146 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TSSEEEEEECCG
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh-hccccccccccc
Confidence            3 479999999865332   2332   234455554    34444454543 356777777643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.017  Score=47.04  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++.||+|||| |..|.+.|..|...++  ++.|+|..+
T Consensus        42 ~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          42 QKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            3579999998 9999999999999998  999999865

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.35  E-value=0.0087  Score=50.08  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .||+|||| |..|.+.|+.|.+.++  +|.|+|.+.
T Consensus         7 ~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            59999998 9999999999999998  999999753

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.35  E-value=0.012  Score=50.31  Aligned_cols=153  Identities=21%  Similarity=0.185  Sum_probs=80.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCcc-------ccccCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL-------GQALEDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~-------~~al~~a   97 (340)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++.  +..+.++...    .+.... ...+.       .+.+..-
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~----~~~~Dv~~~~~v~~~~~~~~~~~g~i   78 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAH----PVVMDVADPASVERGFAEALAHLGRL   78 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCE----EEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCe----EEEEecCCHHHHHHHHHHHHHhcCCc
Confidence            45888999988999999999999998  8999998762  2222222110    111100 00111       1234578


Q ss_pred             CEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 019519           98 DVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        98 DiVi~~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~  167 (340)
                      |++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.+++.+. ..           ..+ .|.
T Consensus        79 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~~~i~~~ss-~~-----------~~~-~~~  144 (242)
T d1ulsa_          79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTAS-RV-----------YLG-NLG  144 (242)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEECC-GG-----------GGC-CTT
T ss_pred             eEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc-ccceeeeecc-cc-----------ccC-CCC
Confidence            9999999875432   2332   2334455544    44444444433 3445554432 11           111 232


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      .-.++.+.-.-..|-+.+|..++  ++.|++-.+-
T Consensus       145 ~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  177 (242)
T d1ulsa_         145 QANYAASMAGVVGLTRTLALELG--RWGIRVNTLA  177 (242)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHHHHHHh--hhCcEEEEEe
Confidence            22333322112235666777763  5566655553

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.31  E-value=0.098  Score=44.67  Aligned_cols=156  Identities=12%  Similarity=0.076  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc---c-------cc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---G-------QA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a   93 (340)
                      +.+.+.|+||++-+|..++..|+..|.  .|++.|.++  .+..+.++.....  ++.... +-+|.   +       +.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH
Confidence            456889999999999999999999997  899999886  3334444543322  233222 11121   1       12


Q ss_pred             cC-CCCEEEEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHh
Q 019519           94 LE-DSDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (340)
Q Consensus        94 l~-~aDiVi~~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~s  162 (340)
                      +. .-|++|..||.... +  ..+..   ..+..|+.    ..+...+.+++.. .+.||+++.-....           
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-----------  150 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV-----------  150 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-----------------
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccccccccc-----------
Confidence            22 37999999986432 1  23322   23344444    4556666666543 56677666433211           


Q ss_pred             CCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       163 g~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      + .+..-.++.+.-....|-+.+|..++  ++.|++-.+
T Consensus       151 ~-~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~V  186 (259)
T d1xq1a_         151 S-ASVGSIYSATKGALNQLARNLACEWA--SDGIRANAV  186 (259)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             c-ccccccccccccchhhhhHHHHHHhc--ccCeEEEEe
Confidence            1 12222333322222345666777763  555665444

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.29  E-value=0.0042  Score=52.74  Aligned_cols=158  Identities=14%  Similarity=0.069  Sum_probs=79.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceE-EEE-ecCCcccc--ccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV-AGY-MGNDQLGQ--ALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v-~~~-~~~~d~~~--al~~aDiVi~~a  104 (340)
                      -||.|+||+|-+|..++..|++.|.  +|+++|.++.+. ..+.......... ... ........  ....-|++|..|
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnA   79 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQ-ADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVA   79 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTT-SSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCchhc-ccccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEECC
Confidence            3899999999999999999999987  899999875110 0000000000000 000 00000011  123469999998


Q ss_pred             CCCCC--C-CCC----HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccch
Q 019519          105 GVPRK--P-GMT----RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (340)
Q Consensus       105 g~~~~--~-g~~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~l  176 (340)
                      |....  + .+.    ....+..|+.-...+++....+- +.+.|++++.....           .+ .|..-.++.+.-
T Consensus        80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~-----------~~-~~~~~~Y~asKa  147 (235)
T d1ooea_          80 GGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM-----------GP-TPSMIGYGMAKA  147 (235)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG-----------SC-CTTBHHHHHHHH
T ss_pred             cccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc-----------CC-cccccchHHHHH
Confidence            85321  1 222    12235566655545455444443 35677776543211           11 221112222221


Q ss_pred             hHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          177 DVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       177 d~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      ....|-+.+|..++-.+..|++..+
T Consensus       148 al~~l~~~la~e~~~~~~~i~v~~i  172 (235)
T d1ooea_         148 AVHHLTSSLAAKDSGLPDNSAVLTI  172 (235)
T ss_dssp             HHHHHHHHHHSTTSSCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEE
Confidence            2234566677666544556665544

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.26  E-value=0.014  Score=47.36  Aligned_cols=71  Identities=11%  Similarity=0.153  Sum_probs=41.8

Q ss_pred             CCCCeEEEEcCCCChHHH-HHHHHHhCCCcceEE-EEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccC--CCCEEE
Q 019519           26 VPDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVI  101 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~-~a~~l~~~~~~~el~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVi  101 (340)
                      |+++||+|||+ |.+|.. .+..+...+...+|+ ++|.+....  ..+.+....+.  .+   +|+++.++  +.|+|+
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~~~~~--~~---~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMVGNPA--VF---DSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHHSSCE--EE---SCHHHHHHSSCCSEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhccccccc--ee---eeeeccccccccceee
Confidence            67789999997 999986 466665544323554 788775222  12221111112  23   45666664  688888


Q ss_pred             EcC
Q 019519          102 IPA  104 (340)
Q Consensus       102 ~~a  104 (340)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            863

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.26  E-value=0.055  Score=46.26  Aligned_cols=79  Identities=13%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCC--ChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecC---------Ccccccc
Q 019519           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN---------DQLGQAL   94 (340)
Q Consensus        27 ~~~KI~IiGaaG--~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~---------~d~~~al   94 (340)
                      +.+++.|+||+|  -+|.++|..|+..|.  +|++.|+++ ....+.++........+.....+         .+..+.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            346899999877  499999999999998  999999987 33344444332211122211111         1112345


Q ss_pred             CCCCEEEEcCCCC
Q 019519           95 EDSDVVIIPAGVP  107 (340)
Q Consensus        95 ~~aDiVi~~ag~~  107 (340)
                      -..|++|..+|..
T Consensus        82 g~id~lV~nag~~   94 (274)
T d2pd4a1          82 GSLDFIVHSVAFA   94 (274)
T ss_dssp             SCEEEEEECCCCC
T ss_pred             CCCCeEEeecccc
Confidence            6889999988864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.12  Score=43.89  Aligned_cols=151  Identities=19%  Similarity=0.160  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc----------ccccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  .+....++.+      ..... +-+|          ..+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~------~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCC------CeEEEccCCCHHHHHHHHHHHHHhc
Confidence            35788999999999999999999997  999999876  2222333322      11111 1111          12334


Q ss_pred             CCCCEEEEcCCCCCCC----CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 019519           95 EDSDVVIIPAGVPRKP----GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~----g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg  163 (340)
                      -.-|++|..||.....    ..+..   ..+..|+    .+.+...+.|++.  .+.+|+++....           ..+
T Consensus        78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~-----------~~~  144 (250)
T d1ydea1          78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVG-----------AIG  144 (250)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHH-----------HHC
T ss_pred             CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccccc-----------ccc
Confidence            5789999999854322    22322   2334443    4566677777654  367777764321           112


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                       .|..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       145 -~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I~  180 (250)
T d1ydea1         145 -QAQAVPYVATKGAVTAMTKALALDES--PYGVRVNCIS  180 (250)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -ccCcchhHHHHhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence             33222333332122346677777774  5667655443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.22  E-value=0.056  Score=40.80  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..+|+|+|| |++|.-+|..|...+.  ++.+++..+
T Consensus        30 ~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          30 VNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            359999998 9999999999998887  999998764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.21  E-value=0.1  Score=44.39  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCc---cc-------cc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QA   93 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a   93 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|.++   .+....++.... ..++.... +-+|   .+       +.
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            34677889988999999999999997  899999875   222223332111 11222211 1111   11       22


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        94 l~~aDiVi~~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      +-.-|++|..||.....   ..+.   ...+..|    ....+...+.+.+. ..+.||+++...
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~~  144 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASAH  144 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc-CCceEeeccccc
Confidence            35789999999875322   1232   2333444    44556667777665 357777776544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.20  E-value=0.028  Score=48.02  Aligned_cols=117  Identities=18%  Similarity=0.210  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEec----CCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVi~~  103 (340)
                      +.+.|+||++-+|..++..|+..|.  .|++.|+++. ...+..+........+.....    -....+.+-.-|++|..
T Consensus         6 K~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn   83 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNN   83 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEe
Confidence            5788999999999999999999997  8999999862 222222221110000000000    00112335689999999


Q ss_pred             CCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          104 AGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       104 ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ||.....   ..+..   ..+.-|+    .+.+...+.|.+. ..+.||+++...
T Consensus        84 AG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS~~  137 (248)
T d2d1ya1          84 AAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASVQ  137 (248)
T ss_dssp             CCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCGG
T ss_pred             CcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-cccccccccccc
Confidence            9864321   22322   2334444    4555666666544 357777776544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.20  E-value=0.022  Score=47.18  Aligned_cols=94  Identities=26%  Similarity=0.311  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ....++|+|+|. |.+|+.++..+..-+.  ++..||.....+        . ...+..    .++++.++.||+|++..
T Consensus        42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~--------~-~~~~~~----~~l~~l~~~~D~v~~~~  105 (199)
T d1dxya1          42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG--------D-HPDFDY----VSLEDLFKQSDVIDLHV  105 (199)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS--------C-CTTCEE----CCHHHHHHHCSEEEECC
T ss_pred             cccceeeeeeec-ccccccccccccccce--eeeccCCccchh--------h-hcchhH----HHHHHHHHhcccceeee
Confidence            334579999998 9999999998886666  999999754211        0 111222    24678889999999974


Q ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          105 GV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       105 g~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      -. +...++       -|.       +.+....+++++||++=..
T Consensus       106 plt~~T~~l-------i~~-------~~l~~mk~~a~lIN~aRG~  136 (199)
T d1dxya1         106 PGIEQNTHI-------INE-------AAFNLMKPGAIVINTARPN  136 (199)
T ss_dssp             CCCGGGTTS-------BCH-------HHHHHSCTTEEEEECSCTT
T ss_pred             ccccccccc-------ccH-------HHhhccCCceEEEecccHh
Confidence            21 211222       111       2333345789999987653

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.042  Score=44.83  Aligned_cols=94  Identities=23%  Similarity=0.314  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ...+|+|+|. |.+|..++..+..-+.  ++..+|.....         .......    ..++++.++.||+|++....
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~---------~~~~~~~----~~~l~ell~~sDii~i~~pl  106 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKL---------PLGNATQ----VQHLSDLLNMSDVVSLHVPE  106 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCC---------CCTTCEE----CSCHHHHHHHCSEEEECCCS
T ss_pred             cceEEEEeec-ccchhhhhhhcccccc--eEeeccccccc---------hhhhhhh----hhhHHHHHhhccceeecccC
Confidence            4579999998 9999999998876666  99999975411         0001111    13567889999999997633


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 019519          107 -PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (340)
Q Consensus       107 -~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~  150 (340)
                       +...+.-..              +.++...+++++||++=.-=+
T Consensus       107 t~~T~~li~~--------------~~l~~mk~~a~lIN~aRG~lv  137 (188)
T d1sc6a1         107 NPSTKNMMGA--------------KEISLMKPGSLLINASRGTVV  137 (188)
T ss_dssp             STTTTTCBCH--------------HHHHHSCTTEEEEECSCSSSB
T ss_pred             CcchhhhccH--------------HHHhhCCCCCEEEEcCcHHhh
Confidence             222233111              223344578999998755433

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.18  E-value=0.0051  Score=52.31  Aligned_cols=158  Identities=15%  Similarity=0.144  Sum_probs=80.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcCCCC--ceEEEEecCCcccccc--CCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTR--SEVAGYMGNDQLGQAL--EDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~~~~--~~v~~~~~~~d~~~al--~~aDiVi~~  103 (340)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|.++.. .......+....  ......  .....+.+  ..-|++|..
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lInn   78 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILCV   78 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEEC
Confidence            5999999999999999999999988  89999986511 000000000000  000000  00011112  246999998


Q ss_pred             CCCCC--CC-CCCH----HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEeccc
Q 019519          104 AGVPR--KP-GMTR----DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (340)
Q Consensus       104 ag~~~--~~-g~~r----~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~~~  175 (340)
                      ||...  .+ ....    ...+..|+......++.+..+- +.+.|++++.-...           .+ .|..-.++.+.
T Consensus        79 AG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~-----------~~-~~~~~~Y~asK  146 (236)
T d1dhra_          79 AGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL-----------DG-TPGMIGYGMAK  146 (236)
T ss_dssp             CCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG-----------SC-CTTBHHHHHHH
T ss_pred             CcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc-----------CC-ccCCcccHHHH
Confidence            88421  11 2221    2234566665555555555443 45777777543211           11 22211222222


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          176 LDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       176 ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                      -....|-+.+|..++-.+..|++-.+.
T Consensus       147 aal~~lt~~la~El~~~~~gI~vn~v~  173 (236)
T d1dhra_         147 GAVHQLCQSLAGKNSGMPSGAAAIAVL  173 (236)
T ss_dssp             HHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEEEE
Confidence            122345566666665435667766554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.15  E-value=0.024  Score=48.56  Aligned_cols=115  Identities=18%  Similarity=0.197  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc-------ccccCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL-------GQALEDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~-------~~al~~a   97 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+..+.++.....  .+.... ...+.       .+.+-.-
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~Dv~~~~~~~~~~~~~~~~~g~i   81 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSM--FVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEE--EECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeE--EEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            45788889989999999999999997  899999876  2334444532210  010000 00111       1334578


Q ss_pred             CEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           98 DVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        98 DiVi~~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      |++|..||.....   ..+.   ...+..|+    ...+...+.|++  ..+.||+++...
T Consensus        82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~isS~~  140 (253)
T d1hxha_          82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMASVS  140 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEECCGG
T ss_pred             CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceecccchh
Confidence            9999999875322   2222   22334453    456666666653  357888876544

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.13  E-value=0.096  Score=44.69  Aligned_cols=113  Identities=18%  Similarity=0.181  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---c-------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  ......++..     ++.... +-+|   .       .+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            46889999989999999999999998  899999876  2222333321     222221 1111   1       1224


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      -..|++|..||.....   ..+   ....+..|+    -..+.+.+.+++. ..+.||+++.-.
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~~  140 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAA  140 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccch
Confidence            5799999999864322   222   223344454    4555666666654 467777776543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.017  Score=46.28  Aligned_cols=73  Identities=23%  Similarity=0.236  Sum_probs=43.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCC--CceEEEEecCCccccccCCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      .+||+|.|++|.+|+.++..+...+-+.=+..+|.......-.|+.....  ...+...   .|+++.++++|+||=.
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~---~~~~~~~~~~DViIDF   78 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQ---SSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEE---SCSTTTTTSCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceee---ccHHHHhcccceEEEe
Confidence            58999999889999999988877653211244554331111112222211  1223322   4567788999988754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.058  Score=46.33  Aligned_cols=116  Identities=14%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc----------ccccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (340)
                      .+++.|+||++-+|.++|..|+..|.  +|++.|+++  .+....++..... ....... ...+          ..+.+
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  999999986  2333333332211 1222221 1111          11224


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ...|+++..+|.....   ..+..   ..+..|.    ...+.+.+.+++.  ++.+++++...
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS~~  152 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSLA  152 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEGG
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEeccch
Confidence            5789999988753221   12222   2233343    4566666666543  46666665433

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.099  Score=44.12  Aligned_cols=159  Identities=15%  Similarity=0.133  Sum_probs=84.8

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecC---------CccccccC
Q 019519           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN---------DQLGQALE   95 (340)
Q Consensus        28 ~~KI~IiGaaG--~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~---------~d~~~al~   95 (340)
                      .+++.|+||+|  -+|.+++..|+..|.  +|++.|.++ ....+.++..............+         .+..+.+.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            46899999866  488999999999998  899999987 33333333322111111111010         01123345


Q ss_pred             CCCEEEEcCCCCCCCC---C-----CH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC
Q 019519           96 DSDVVIIPAGVPRKPG---M-----TR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG  163 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~g---~-----~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg  163 (340)
                      ..|++|..++......   .     ..   .....-|......+.+.+..+- +...++++|.....           .+
T Consensus        83 ~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~-----------~~  151 (258)
T d1qsga_          83 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE-----------RA  151 (258)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------SB
T ss_pred             ccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------cC
Confidence            6688888876532111   1     11   1223345555555555555544 34556666544311           11


Q ss_pred             CCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       164 ~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                       .|..-.++.+.-....+-+.+|+.++  ++.|++-.+-
T Consensus       152 -~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         152 -IPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             -CTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence             22222334432223356778888885  6777766553

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0085  Score=51.28  Aligned_cols=153  Identities=18%  Similarity=0.226  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecC-------CccccccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-------DQLGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-------~d~~~al~~aDiV  100 (340)
                      .+.+.|+||++.+|..++..|+..|.  +|++.|+++.+  ..++.+..   .+......       ....+.+..-|++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~--l~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~id~l   78 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDVL   78 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhcc---CCceeeeeccccccccccccccccceeE
Confidence            35788889999999999999999997  99999987521  11222221   11111110       1112335689999


Q ss_pred             EEcCCCCCCC---CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCce
Q 019519          101 IIPAGVPRKP---GMTRDD---LFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (340)
Q Consensus       101 i~~ag~~~~~---g~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (340)
                      |..+|.+...   ..+..+   .+.-|+    ...+.+.+.+.+. +.+.+++++......          .| .+..-.
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~----------~~-~~~~~~  146 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV----------KG-VVNRCV  146 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT----------BC-CTTBHH
T ss_pred             EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhcc----------CC-ccchhH
Confidence            9999875432   223222   233343    4555556655544 567777776554311          11 222222


Q ss_pred             EeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       171 iG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      ++.+.-....+-+.+|..++  ++.|++-.+
T Consensus       147 Y~~sKaal~~l~r~lA~e~~--~~gIrvN~I  175 (245)
T d2ag5a1         147 YSTTKAAVIGLTKSVAADFI--QQGIRCNCV  175 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            23321112345677777774  556665544

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=94.94  E-value=0.0037  Score=49.31  Aligned_cols=62  Identities=13%  Similarity=0.083  Sum_probs=34.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      |++||+ |++|++++..|.....  ...+++.+.  ..+.+|.+.... .  .    .+..++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~~-~--~----~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYGG-K--A----ATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTCC-C--C----CSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhcccc-c--c----cchhhhhccCcEEEEec
Confidence            689998 9999999987755433  234677653  222333332211 1  1    12467899999999985

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.87  E-value=0.25  Score=41.99  Aligned_cols=117  Identities=14%  Similarity=0.081  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccc----------cc
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG----------QA   93 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a   93 (340)
                      +.+++.|+||++.+|..++..|+..|.  +|++.|.++  ++....++.....  .+..+. +-+|.+          +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  999999986  2333334443332  222211 112211          22


Q ss_pred             c-CCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           94 L-EDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        94 l-~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      + ..-|++|..+|.....   ..+.   ...+..|+    ..++.+.+.+.+. +.+.+|+++...
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~  145 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIA  145 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGG
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-cccccccccccc
Confidence            2 2378999888865432   1222   22333333    4455555666554 456666666444

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.27  Score=42.73  Aligned_cols=156  Identities=13%  Similarity=0.101  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCC---CCceEEEEe-cCCccc----------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYM-GNDQLG----------   91 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~-~~~d~~----------   91 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+..+.+|....   ...++..+. +-+|.+          
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            45888999999999999999999997  899999986  344455554321   122344332 112211          


Q ss_pred             cccCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHH
Q 019519           92 QALEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (340)
Q Consensus        92 ~al~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~  161 (340)
                      +.+..-|++|..||.....   ..+.   ...+..|+.    ..+..++.+.+.. .+.+|+++.....           
T Consensus        90 ~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~-----------  157 (297)
T d1yxma1          90 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKA-----------  157 (297)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTT-----------
T ss_pred             HHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-ccccccccccccc-----------
Confidence            2245789999998864322   1222   233445544    4455555555443 4455555543211           


Q ss_pred             hCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       162 sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                       + .|..-.++.+.-....|-+.+|..++  +..|++-.+
T Consensus       158 -~-~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  193 (297)
T d1yxma1         158 -G-FPLAVHSGAARAGVYNLTKSLALEWA--CSGIRINCV  193 (297)
T ss_dssp             -C-CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             -c-ccccccchhHHHHHHHHHHHHHHHhc--ccCceEEEe
Confidence             1 22111222221112345677777774  566665444

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.85  E-value=0.027  Score=44.83  Aligned_cols=65  Identities=25%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             CeEEEEcCCCChHHH-HHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccC-CCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~-~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVi~~a  104 (340)
                      +||+|||+ |.+|+. ....+...+. .+++++|.++.  ...+.++..    +.+  +   +|+++.++ +.|+|+++.
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~----~~~--~---~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYRV----SAT--C---TDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTTC----CCC--C---SSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhccc----ccc--c---ccHHHhcccccceecccc
Confidence            79999997 999975 4555554433 38889998752  222222211    111  1   34555554 789998864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.081  Score=41.94  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=58.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcccccc--------CCCCE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL--------EDSDV   99 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al--------~~aDi   99 (340)
                      -+|+|+|+ |.+|...+..+...+. ..|+..|.++ ....+.++.   .. .+... ...+..+..        .++|+
T Consensus        28 d~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G---a~-~~~~~-~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          28 HKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG---AD-LVLQI-SKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---CS-EEEEC-SSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC---Cc-ccccc-cccccccccccccccCCCCceE
Confidence            38999997 9999998888877764 5799999886 223333332   11 22221 222322211        37899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      ||.+.|.+               ..+..   .++-..|.+.+++++.|.+
T Consensus       101 vid~~G~~---------------~~~~~---a~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2         101 TIECTGAE---------------ASIQA---GIYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             EEECSCCH---------------HHHHH---HHHHSCTTCEEEECSCCCS
T ss_pred             EEeccCCc---------------hhHHH---HHHHhcCCCEEEEEecCCC
Confidence            99998643               11222   2222347888888877654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.81  E-value=0.0094  Score=50.38  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      |||+|||| |..|.+.|..|.+.|+  +|.|++..+
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            79999998 9999999999999998  899998754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.81  E-value=0.014  Score=49.29  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      ..||+|||| |..|.++|..|...|+  +++++|..
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERS   36 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            469999998 9999999999999998  99999974

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=94.76  E-value=0.036  Score=49.76  Aligned_cols=70  Identities=19%  Similarity=0.299  Sum_probs=48.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ..++|||+ |..+..-+..+...-.+.+|.++|++.  ....+.++.... ...+...   .++++++++||+|+.+
T Consensus       129 ~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v~~~---~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         129 RKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYS-GLTIRRA---SSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCT-TCEEEEC---SSHHHHHTTCSEEEEC
T ss_pred             ceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhcc-CCCceec---CCHHHHHhcCCceeec
Confidence            48999997 988876655444332368999999986  344555665422 2345442   5778999999999874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.71  E-value=0.011  Score=51.11  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++.||+|||| |..|.+.|+.|.+.|+  +|+|+|..+
T Consensus        29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            3569999998 9999999999999998  999999754

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.68  E-value=0.011  Score=46.99  Aligned_cols=70  Identities=20%  Similarity=0.388  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCC-CcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~-~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      .||+|+||+|.+|.-+...|...+ ...++.++..++..|..  +...  .......   ...+..+.++|+++++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~~--~~~~~~~---~~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKFK--DQDITIE---ETTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEET--TEEEEEE---ECCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccc--cccc--CCccccc---ccchhhhhhhhhhhhccC
Confidence            489999999999999998887776 36788888654322211  1111  1122222   122466789999999863

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.042  Score=43.45  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=41.7

Q ss_pred             CCeEEEEcCCCChHHH-HHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~-~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ++||+|||+ |.+|.. ....+...+.+.-+.++|.++.  ...+.++.       +..+   +++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-------~~~~---~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-------IPYA---DSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-------CCBC---SSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-------cccc---ccchhhhhhcccccccc
Confidence            379999997 999975 5666665544444678898763  22222221       1111   34556678999998874

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.63  E-value=0.15  Score=43.01  Aligned_cols=153  Identities=20%  Similarity=0.236  Sum_probs=86.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCcc----------ccccC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (340)
                      =|.|+||++-+|..++..|+..|.  +|++.|.+.   .+....++....  .++..+. +-+|.          .+.+.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            356779999999999999999997  898888765   233333333222  1232221 11221          12235


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 019519           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (340)
Q Consensus        96 ~aDiVi~~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~  165 (340)
                      .-|++|..||.....   ..+.   ...+.-|+    ...+..++.|.+. ..+.||++|.-..           ..| .
T Consensus        79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~-----------~~~-~  145 (244)
T d1edoa_          79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVG-----------LIG-N  145 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHH-----------HHC-C
T ss_pred             CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhh-----------cCC-C
Confidence            789999999865322   1222   22333444    4566666766654 4677887765331           122 3


Q ss_pred             CCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       166 ~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      |..-.++.+.-....|-+.+|..++  +..|++-.+
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I  179 (244)
T d1edoa_         146 IGQANYAAAKAGVIGFSKTAAREGA--SRNINVNVV  179 (244)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEE
Confidence            3333344432222346677777774  556665544

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.61  E-value=0.035  Score=44.81  Aligned_cols=70  Identities=13%  Similarity=0.204  Sum_probs=42.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEE-EEeCCCcHHHHHHHhc-CCCCceEEEEecCCcccccc--CCCCEEEEc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQAL--EDSDVVIIP  103 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~-L~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~al--~~aDiVi~~  103 (340)
                      ++||+|||+ |.+|+..+..+...+.+ +|+ ++|.++..+.  ++.. ...+.....+   +|+++.+  .+.|+|+++
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTKIH---GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhccccccceeec---CcHHHhhhccccceeeec
Confidence            379999997 99999988877765433 554 7787752222  1211 1112223333   4565655  578999986


Q ss_pred             C
Q 019519          104 A  104 (340)
Q Consensus       104 a  104 (340)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.60  E-value=0.15  Score=42.95  Aligned_cols=116  Identities=17%  Similarity=0.192  Sum_probs=69.7

Q ss_pred             e-EEEEcCCCChHHHHHHHHHhCCC-----cceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCcc----------
Q 019519           30 K-VAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------   90 (340)
Q Consensus        30 K-I~IiGaaG~VG~~~a~~l~~~~~-----~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------   90 (340)
                      + |.|+||++-+|..++..|+..|.     ...++++|.++  .+....++....  .+...+. +-+|.          
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            5 46889989999999999988764     12488999876  344455555433  2333221 11221          


Q ss_pred             ccccCCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           91 GQALEDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        91 ~~al~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .+.+-.-|++|..||.....   ..+.   ...+..|+    ...+.+.+.|++. ..+.+|+++.-.
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~  146 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVA  146 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEechh
Confidence            13345799999999875322   1222   22334444    4566677777654 467777776544

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.57  E-value=0.13  Score=43.42  Aligned_cols=153  Identities=16%  Similarity=0.097  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc--HHHHHHHhcCCCCceEEEEe-cCCc---c-------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (340)
                      .+++.|+||++.+|..++..|+..|.  +|++.|.++.  .....++..     ++..+. +-.|   .       .+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS-----SEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35888999988999999999999998  9999998762  222222221     222211 1111   1       2334


Q ss_pred             CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 019519           95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~~~sg~~~~  167 (340)
                      ..-|++|..||.+.. +  ..+   ....+..|+.....+.+....+.. ...++++|.....-..-.            
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~------------  145 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGL------------  145 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHH------------
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCc------------
Confidence            679999998876432 2  222   234566777777777777776653 345555554433221110            


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCceeEEE
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~G  202 (340)
                       -.++.+.-....|-+.+|+.++  +..|++-.+-
T Consensus       146 -~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~  177 (241)
T d2a4ka1         146 -AHYAAGKLGVVGLARTLALELA--RKGVRVNVLL  177 (241)
T ss_dssp             -HHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEEE
T ss_pred             -cccchhhHHHHHHHHHHHHHHh--HhCCEEeeec
Confidence             1123332222357788888885  4566655443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.073  Score=42.15  Aligned_cols=130  Identities=17%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .+|.|+|+ |.+|...+..+...+.  +++.+|.++ ....+.++.-   . .+..+....+.....++.|+||.+.|.+
T Consensus        32 ~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGa---d-~~i~~~~~~~~~~~~~~~D~vid~~g~~  104 (168)
T d1uufa2          32 KKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGA---D-EVVNSRNADEMAAHLKSFDFILNTVAAP  104 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTC---S-EEEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred             CEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccCC---c-EEEECchhhHHHHhcCCCceeeeeeecc
Confidence            48999997 9999998888887776  667788765 3334444431   1 1211111112234456899999988754


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-c--chhHHHHHHH
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T--TLDVVRAKTF  184 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~--~ld~~R~~~~  184 (340)
                      .            ++      -..++-..|.+.+++++-|.+.....-.  ....  +...+++|. +  .-|..++-.+
T Consensus       105 ~------------~~------~~~~~~l~~~G~iv~~G~~~~~~~~~~~--~~l~--~k~~~i~Gs~~~~~~d~~e~l~l  162 (168)
T d1uufa2         105 H------------NL------DDFTTLLKRDGTMTLVGAPATPHKSPEV--FNLI--MKRRAIAGSMIGGIPETQEMLDF  162 (168)
T ss_dssp             C------------CH------HHHHTTEEEEEEEEECCCC-------CH--HHHH--TTTCEEEECCSCCHHHHHHHHHH
T ss_pred             h------------hH------HHHHHHHhcCCEEEEeccCCCCcccccH--HHHH--HCCcEEEEEeecCHHHHHHHHHH
Confidence            1            00      1223344588999888776543221110  1111  334678887 3  2344444444


Q ss_pred             HHH
Q 019519          185 YAG  187 (340)
Q Consensus       185 la~  187 (340)
                      +++
T Consensus       163 ~a~  165 (168)
T d1uufa2         163 CAE  165 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.51  E-value=0.12  Score=44.04  Aligned_cols=114  Identities=15%  Similarity=0.221  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC-CceEEEEe-cCCcc---c-------ccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYM-GNDQL---G-------QAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d~---~-------~al   94 (340)
                      +.+.|+||++-+|..++..|+..|.  +|++.|+++  .+..+.++..... ..++..+. +-+|.   +       +.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3567779999999999999999997  899999986  3444555554432 12343332 11111   1       223


Q ss_pred             CCCCEEEEcCCCCCCC-------CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 019519           95 EDSDVVIIPAGVPRKP-------GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~-------g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      -.-|++|..||.....       .++..   ..+..|+.    ..+...+.+++. ..++|++.|
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            5789999998863211       12222   23344444    556666666544 344544443

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.46  E-value=0.018  Score=50.98  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++||+|||| |.-|.+.|..|...|.  +|.+++.++
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCC
Confidence            579999998 9999999999998887  999999876

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.35  E-value=0.016  Score=47.25  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=29.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      |||+|||| |++|..+|..|...+.-.+|.+++.++
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999998 999999999887655445899998654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.25  E-value=0.22  Score=35.78  Aligned_cols=72  Identities=18%  Similarity=0.351  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCChH-HHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           27 PDRKVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG-~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +.+||=+||. |-.| +++|..|...|+  +|.-.|..+. ....+|.+..  ..+..  + .+ .+.++++|.||.+.+
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~G--i~v~~--g-~~-~~~i~~~d~vV~S~A   76 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQAG--AKIYI--G-HA-EEHIEGASVVVVSSA   76 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHTT--CEEEE--S-CC-GGGGTTCSEEEECTT
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHCC--CeEEE--C-Cc-cccCCCCCEEEECCC
Confidence            3479999998 5555 677999999998  9999998752 2223444433  23432  2 22 456899999999988


Q ss_pred             CCC
Q 019519          106 VPR  108 (340)
Q Consensus       106 ~~~  108 (340)
                      +|.
T Consensus        77 I~~   79 (96)
T d1p3da1          77 IKD   79 (96)
T ss_dssp             SCT
T ss_pred             cCC
Confidence            873

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.16  E-value=0.23  Score=38.92  Aligned_cols=97  Identities=16%  Similarity=0.123  Sum_probs=58.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccc---ccc-----CCCCE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLG---QAL-----EDSDV   99 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~---~al-----~~aDi   99 (340)
                      .+|.|+|+ |.+|...+..+...+.  +++.+|.++ ....+.++..   ...+.......+..   +.+     .++|+
T Consensus        28 ~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          28 TTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhcccccCCce
Confidence            38999997 9999999888888885  899999876 3333444331   11111111111111   111     46999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      ||.+.|.+               ..+   -..++-..|.+.+++++.|.+
T Consensus       102 vid~~g~~---------------~~~---~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2         102 TIDCSGNE---------------KCI---TIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             EEECSCCH---------------HHH---HHHHHHSCTTCEEEECSCCSS
T ss_pred             eeecCCCh---------------HHH---HHHHHHHhcCCceEEEecCCC
Confidence            99988643               111   122333458999999987754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.13  E-value=0.38  Score=41.08  Aligned_cols=109  Identities=22%  Similarity=0.259  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCc---c-------cccc
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (340)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  ......++..     ++.... +-+|   .       .+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHHh
Confidence            45888999999999999999999997  999999875  2233333332     122111 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCC-------CCCH----HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 019519           95 EDSDVVIIPAGVPRKP-------GMTR----DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~-------g~~r----~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                      ...|++|..||.....       .+..    ...+.-|    ....+.+.+.+++..  +-+|+++
T Consensus        78 g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~  141 (276)
T d1bdba_          78 GKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTI  141 (276)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC
T ss_pred             CCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeee
Confidence            5789999999863211       1111    2233344    345666677776552  4444443

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.059  Score=43.05  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=48.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ++++|+|- |.+|..+|..+...+.  .+..+|+++.++...- .+..   ++.      .+++++..+|+||.+-|.+
T Consensus        25 k~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A~-~dG~---~v~------~~~~a~~~adivvtaTGn~   90 (163)
T d1li4a1          25 KVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQAA-MEGY---EVT------TMDEACQEGNIFVTTTGCI   90 (163)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH-HTTC---EEC------CHHHHTTTCSEEEECSSCS
T ss_pred             CEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHhh-cCce---Eee------ehhhhhhhccEEEecCCCc
Confidence            58999998 9999999999998776  9999999874333221 2111   221      3478899999999987643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.08  E-value=0.022  Score=47.92  Aligned_cols=33  Identities=30%  Similarity=0.572  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +||+|||| |.-|.+.|+.|.+.|+  ++.++|..+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            49999998 9999999999999998  999999754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.029  Score=45.52  Aligned_cols=74  Identities=16%  Similarity=0.270  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-H----HHHHHHhcCCCCceEEEEe--cCCccccccCCCCEE
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-P----GVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~----~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiV  100 (340)
                      ..+|.|+|+ |.+|.++++.|...+ +.+|++++.+.. .    ..+.++.... ...+....  ...++.+.+.++|+|
T Consensus        18 ~k~vlIlGa-GGaarai~~al~~~g-~~~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dii   94 (182)
T d1vi2a1          18 GKTMVLLGA-GGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEALASADIL   94 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHhhcC-CceEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchhhhhccccee
Confidence            359999998 999999999888876 369999998752 1    2222332211 12222221  112334567899999


Q ss_pred             EEcC
Q 019519          101 IIPA  104 (340)
Q Consensus       101 i~~a  104 (340)
                      |.+-
T Consensus        95 IN~T   98 (182)
T d1vi2a1          95 TNGT   98 (182)
T ss_dssp             EECS
T ss_pred             cccc
Confidence            9974

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.99  E-value=0.02  Score=46.02  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.||+|||| |..|...|..|...|+ .+|.++|..+
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            369999998 9999999999999886 3589999865

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.97  E-value=0.42  Score=36.68  Aligned_cols=114  Identities=11%  Similarity=0.023  Sum_probs=68.6

Q ss_pred             CCeEEEEcCC---CChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaa---G~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +..|+|+||+   +..|..++..|...++  +|+.+.....     ++.      -+..+   .++.+.-...|+|++..
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~-----~i~------G~~~~---~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE-----EVL------GRKCY---PSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EET------TEECB---SSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc-----ccC------CCccc---ccccccCccceEEEEEe
Confidence            4689999986   4688888889988888  8888865421     011      11222   33434334789988873


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-c-chhHHHH
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T-TLDVVRA  181 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~-~ld~~R~  181 (340)
                                      +.+.+.++.+++.+.+++++++   +|-..-..+ .+..+..|    -+++|= | ..+..||
T Consensus        83 ----------------p~~~~~~~~~e~~~~g~k~v~~---~~G~~~ee~-~~~a~~~g----i~vig~~C~~v~~~rl  137 (139)
T d2d59a1          83 ----------------KPKLTMEYVEQAIKKGAKVVWF---QYNTYNREA-SKKADEAG----LIIVANRCMMREHERL  137 (139)
T ss_dssp             ----------------CHHHHHHHHHHHHHHTCSEEEE---CTTCCCHHH-HHHHHHTT----CEEEESCCHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHhCCCEEEE---eccccCHHH-HHHHHHCC----CEEEcCCcChhhhhhh
Confidence                            3456666666666777776554   333222222 23345566    478886 7 4455554

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.94  E-value=0.11  Score=43.43  Aligned_cols=100  Identities=19%  Similarity=0.240  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC----------cHHHHHHHhcCCCCceEEEEecCCccccccCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----------TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~----------~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (340)
                      ..||++.|| |..|..++..+...+. .+++++|.+-          ......++.+.......     ..++.++++++
T Consensus        26 d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~g~   98 (222)
T d1vl6a1          26 EVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPERL-----SGDLETALEGA   98 (222)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCC-----CSCHHHHHTTC
T ss_pred             hcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchhh-----hcchHhhccCc
Confidence            359999998 9999999988876653 6899999863          11122233322211111     24567889999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 019519           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (340)
Q Consensus        98 DiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t  152 (340)
                      |+++-+..    +|..+.              +.|++.+++.+|+-.|||..-..
T Consensus        99 ~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e  135 (222)
T d1vl6a1          99 DFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEID  135 (222)
T ss_dssp             SEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSC
T ss_pred             ceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchh
Confidence            98777652    232221              24666788999999999976443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.79  E-value=0.025  Score=44.41  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +||+|||| |++|..+|..|...+.-.+|+|+|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999998 999999999888766444899999775

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.76  E-value=0.03  Score=49.44  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ++||+|||| |..|.+.|..|+..+...++++++..+
T Consensus         4 ~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           4 IRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            358999998 999999999888777666999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.096  Score=41.69  Aligned_cols=68  Identities=13%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH--HHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .++|.|+|| |-.+.++++.|...+.  +|.+++++..+  ..+..+.+.   ..+....  .+ .....++|+||.+-
T Consensus        18 ~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~~--~~-~~~~~~~dliIN~T   87 (170)
T d1nyta1          18 GLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQALS--MD-ELEGHEFDLIINAT   87 (170)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEECC--SG-GGTTCCCSEEEECC
T ss_pred             CCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---ccccccc--cc-cccccccceeeccc
Confidence            359999998 9899999999998886  79999876422  222222221   1344321  11 22346899999863

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.63  E-value=0.032  Score=46.99  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      |+||+|||| |..|.++|..|.+.|+ ..+.+++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            589999998 9999999999998873 3788998754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.56  E-value=0.026  Score=47.94  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      -|+|||| |-+|.++|+.|+..|.  +|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999998 9999999999999987  999999765

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.50  E-value=0.11  Score=43.91  Aligned_cols=157  Identities=13%  Similarity=0.120  Sum_probs=84.1

Q ss_pred             CCCeEEEEcCCC--ChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCc-eEEEEecCCc---c-------cc
Q 019519           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRS-EVAGYMGNDQ---L-------GQ   92 (340)
Q Consensus        27 ~~~KI~IiGaaG--~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~-~v~~~~~~~d---~-------~~   92 (340)
                      +.+++.|+||+|  -+|..++..|+..|.  +|++.|.++ ....+.++....... .+..  +-+|   .       .+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRA--DVTQDEELDALFAGVKE   82 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEEC--CTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCccccccc--ccCCHHHHHHHHHHHHH
Confidence            346899999876  599999999999997  899999876 333333332221111 1111  1111   1       12


Q ss_pred             ccCCCCEEEEcCCCCCC-------CCCCHHH---HHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHH
Q 019519           93 ALEDSDVVIIPAGVPRK-------PGMTRDD---LFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKK  161 (340)
Q Consensus        93 al~~aDiVi~~ag~~~~-------~g~~r~~---~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~  161 (340)
                      .+-.-|++|..+|....       ...+..+   .+..|+.....+++....+- ..+.+|+++.-...           
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~-----------  151 (256)
T d1ulua_          83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE-----------  151 (256)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT-----------
T ss_pred             hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc-----------
Confidence            23568999999886421       1233332   34456655555555544332 35677777643321           


Q ss_pred             hCCCCCCceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       162 sg~~~~~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .+ .|..-.++.+.-....+-+.+|..++  +..|++-.+
T Consensus       152 ~~-~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I  188 (256)
T d1ulua_         152 KV-VPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAI  188 (256)
T ss_dssp             SB-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CC-CCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeee
Confidence            11 22222233321112235666777774  566665444

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.44  E-value=0.26  Score=34.92  Aligned_cols=71  Identities=24%  Similarity=0.309  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCChH-HHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           28 DRKVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        28 ~~KI~IiGaaG~VG-~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      .|||=+||- |-.| +.+|..|...|+  +|.-.|..+... ...|+....  ++  +.+ .+ .+.++++|+||.+.++
T Consensus         1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~~-t~~L~~~Gi--~i--~~g-h~-~~~i~~~d~vV~SsAI   70 (89)
T d1j6ua1           1 HMKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETER-TAYLRKLGI--PI--FVP-HS-ADNWYDPDLVIKTPAV   70 (89)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHHHHTTC--CE--ESS-CC-TTSCCCCSEEEECTTC
T ss_pred             CcEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCChh-HHHHHHCCC--eE--Eee-ec-ccccCCCCEEEEecCc
Confidence            379999998 6666 478889999998  999999876322 224665543  23  222 23 4668999999999888


Q ss_pred             CC
Q 019519          107 PR  108 (340)
Q Consensus       107 ~~  108 (340)
                      |.
T Consensus        71 ~~   72 (89)
T d1j6ua1          71 RD   72 (89)
T ss_dssp             CT
T ss_pred             CC
Confidence            73

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.045  Score=40.88  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+.||+|||| |.+|.-+|..|...+.  ++.+++..+
T Consensus        20 ~p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          20 LPERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            3569999998 9999999999998887  999999865

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.032  Score=38.96  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +++|+|+|+ |+.|+-++.....-|+  +++.+|.+.
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            358999998 9999999887777777  999999865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.34  E-value=0.022  Score=42.57  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+.|++|+|| |++|.-+|..|...+.  ++.|++..+
T Consensus        20 ~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            4579999998 9999999999988777  999999864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.0052  Score=54.20  Aligned_cols=106  Identities=24%  Similarity=0.326  Sum_probs=63.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh----CCC-----cceEEEEeCCC--cHHHHHHHhcCC-CCceEEEEecCCccccccC-
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL----NPL-----VSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGNDQLGQALE-   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~----~~~-----~~el~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~-   95 (340)
                      .||+|.|| |..|..++..+..    .++     ...++++|.+.  .++..-++.... ...+-.......++.++++ 
T Consensus        26 ~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~  104 (294)
T d1pj3a1          26 HKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI  104 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHH
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHh
Confidence            49999998 9999888876543    333     24699999864  111110111100 0000000001134667665 


Q ss_pred             -CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519           96 -DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        96 -~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                       +.|++|-+.|.+.   .           +.+++.+.|.+.+++.+|+-.|||..
T Consensus       105 ~kptvliG~S~~~g---~-----------ft~evi~~Ma~~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1         105 LKPSTIIGVAGAGR---L-----------FTPDVIRAMASINERPVIFALSNPTA  145 (294)
T ss_dssp             HCCSEEEECCCSSC---C-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             cCCceEEEecCCCC---c-----------CCHHHHHHHHhcCCCcEEEEccCCCC
Confidence             8888888766542   1           22456667778899999999999975

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.30  E-value=0.19  Score=42.53  Aligned_cols=156  Identities=16%  Similarity=0.166  Sum_probs=80.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEe-cCCcc----------cccc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (340)
                      +.+.|+||++-+|..++..|+..|.  +|++.+.+.   .+....++.....  ++..+. +-+|.          .+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHHc
Confidence            4778889989999999999999998  888866544   2333344443332  222221 11221          1223


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 019519           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~  167 (340)
                      -.-|++|..+|.....   ..+.   ...+..|+.-...+++..-.+- ..+.+++++......          .| .|.
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~----------~~-~~~  151 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM----------TG-IPN  151 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC----------CS-CCS
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc----------cC-CCC
Confidence            4789999999864322   1222   2334455554444444444333 234444444322111          11 222


Q ss_pred             CceEeccchhHHHHHHHHHHHcCCCCCCCceeEE
Q 019519          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (340)
Q Consensus       168 ~kviG~~~ld~~R~~~~la~~l~v~~~~v~~~v~  201 (340)
                      .-.++.+.-....+-+.+|..++  +..|++-.+
T Consensus       152 ~~~Y~asK~al~~l~r~lA~e~~--~~gIrvN~I  183 (259)
T d1ja9a_         152 HALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCI  183 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHHh--hcCeEEecc
Confidence            22222222122345677777775  455655444

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.29  E-value=0.05  Score=40.52  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+.||+|||| |.+|.-+|..+...|.  ++.|++..+
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            4579999998 9999999999988886  999999765

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.28  E-value=0.12  Score=41.33  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      ..+|.|+|+ |-++.++++.|...+  .+|.+++++.  ++..+..+....   .+....  .+ ...+.++|+||.+.
T Consensus        18 ~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          18 NQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPYG---NIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGGS---CEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhcc---ccchhh--hc-cccccccceeeecc
Confidence            459999998 989999999888754  5999999875  333344444222   333332  12 24578999999984

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.039  Score=46.88  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +..||+|||| |.-|.+.|..|...|+  +|.+++..+
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4569999998 9999999999999998  999998654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.23  E-value=0.062  Score=44.85  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ...||+|||| |..|.+.|..|...++  ++.|+|...
T Consensus        48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            4579999998 9999999999999998  999999765

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.20  E-value=0.2  Score=42.28  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=65.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcc-------ccccCCCCEEEE
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQL-------GQALEDSDVVII  102 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~-------~~al~~aDiVi~  102 (340)
                      ..|+||++.+|..+|..|+..|.  .|++.|.+. .......+........+.   ...+.       .+.+-.-|++|.
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~---~~~~~~~~~~~~~~~~G~iDiLVn   77 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPM---SEQEPAELIEAVTSAYGQVDVLVS   77 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEEC---CCCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccC---CHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57999988999999999999997  899999875 211111121111111221   11222       233457899999


Q ss_pred             cCCCCC--CC--CCCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          103 PAGVPR--KP--GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       103 ~ag~~~--~~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .||...  ++  ..+..+   .+..|    ....+.+.+.+.+.. .+.||++|.-.
T Consensus        78 NAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~  133 (252)
T d1zmta1          78 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSAT  133 (252)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCST
T ss_pred             CCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeecccccc
Confidence            887532  22  233322   22333    456677777777654 56677776443

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.18  E-value=0.086  Score=41.96  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=41.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      .||.|+|+ |-++.++++.|...+. .+|.+++.+..++.  .|.+...   ....   ..  ....++|+||.+-
T Consensus        18 ~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka~--~L~~~~~---~~~~---~~--~~~~~~DliINaT   81 (167)
T d1npya1          18 AKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTGQ--YLAALYG---YAYI---NS--LENQQADILVNVT   81 (167)
T ss_dssp             SCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHHH--HHHHHHT---CEEE---SC--CTTCCCSEEEECS
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHHH--HHHHhhh---hhhh---hc--ccccchhhheecc
Confidence            58999998 9999999999988774 58999987652222  2222111   1111   11  1246899999863

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.18  Score=43.03  Aligned_cols=115  Identities=18%  Similarity=0.158  Sum_probs=68.0

Q ss_pred             CeEE-EEcCCCChHHHHHHHHHhC-CCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCcc----------cccc
Q 019519           29 RKVA-VLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQL----------GQAL   94 (340)
Q Consensus        29 ~KI~-IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~----------~~al   94 (340)
                      ++|+ |+||++-+|..++..|+.. +.  .|++.+.++  .+..+.+|........... .+-+|.          .+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~-~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQ-LDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEE-CCTTCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEE-EecCCHHHHHHHHHHHHHhc
Confidence            5784 6799899999999988864 55  899999886  3344455554332112111 111221          1234


Q ss_pred             CCCCEEEEcCCCCCC-CC--CCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 019519           95 EDSDVVIIPAGVPRK-PG--MTRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (340)
Q Consensus        95 ~~aDiVi~~ag~~~~-~g--~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  146 (340)
                      ..-|++|..||.... +.  .+..   ..+.-|..-...+++.+-.+- +.+.+|+++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            579999999997432 21  2222   234556666556655555432 3577887765

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=93.07  E-value=0.11  Score=42.72  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEe---------------------c
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYM---------------------G   86 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~---------------------~   86 (340)
                      +||.|||. |.-|.+++..+...++ ..+.+.+|.|.   +  +|.+.....++..-.                     .
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~---~--~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL---Q--VLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH---H--HHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH---H--HHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            58999998 9999999988877654 34888888763   2  233333222222210                     0


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        87 ~~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      .....+.++++|+||++||+.   |-+.    ..-.+++-++++..   . .-.+-++|=|-
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlG---GgTG----tgaapviA~~ake~---g-~lvv~ivtlPF  125 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFG---GGTG----TGASPVIAKIAKEM---G-ILTVAIVTTPF  125 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETT---SSHH----HHHHHHHHHHHHHT---T-CEEEEEEEECC
T ss_pred             HHHHHHHhcCCCeEEEEEecC---CCcc----cchHHHHHHHHHHc---C-CceEEEEeech
Confidence            013456689999999998765   2222    23345555555543   2 12344456665

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.04  E-value=0.056  Score=40.51  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.||+|+|| |.+|.-+|..|...+.  ++.|++..+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            579999998 9999999999987776  999999754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.079  Score=39.99  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+.||+|+|| |++|.-+|..|...+.  ++.+++..+
T Consensus        21 ~pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          21 LPGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            3579999998 9999999999998887  999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.92  E-value=0.57  Score=39.18  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCC--hHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~--VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.+++.|+||+|.  +|.++|..|+..|.  +|+|.+.++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            4568999997664  99999999999997  899999876

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.13  Score=41.17  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      ...+|+|||.+..||..++..|.+.+.  .+.+++..
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~   72 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK   72 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT
T ss_pred             ccceEEEEecCCccchHHHHHHHhccC--ceEEEecc
Confidence            446999999977899999999998876  78888754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.036  Score=47.00  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..||+|+|+ |.+|++++..|+..|+ .+|.|+|-+.
T Consensus        30 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            469999998 9999999999998885 7999999764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.74  E-value=0.093  Score=41.94  Aligned_cols=56  Identities=21%  Similarity=0.406  Sum_probs=42.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~  106 (340)
                      ...+|+|||.+..||..++..|.+.+.  .+.+++...                       .++.+.+++||+||.++|.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~t-----------------------~~l~~~~~~ADivI~a~G~   90 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRFT-----------------------KNLRHHVENADLLIVAVGK   90 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSSC-----------------------SCHHHHHHHCSEEEECSCC
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc--ccccccccc-----------------------chhHHHHhhhhHhhhhccC
Confidence            346999999977899999999988876  677665321                       2345667888888888886


Q ss_pred             C
Q 019519          107 P  107 (340)
Q Consensus       107 ~  107 (340)
                      |
T Consensus        91 p   91 (166)
T d1b0aa1          91 P   91 (166)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.65  E-value=0.072  Score=47.19  Aligned_cols=67  Identities=10%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~  103 (340)
                      ..++|+|+ |..+...+..+...-.+.+|.++|.++  .+..+.++.+...  .+..     +..+++++||+|+.+
T Consensus       126 ~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~--~~~~-----~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         126 SVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGI--SASV-----QPAEEASRCDVLVTT  194 (320)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTC--CEEE-----CCHHHHTSSSEEEEC
T ss_pred             cEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCC--cccc-----chhhhhccccEEEEe
Confidence            58999997 988877666555433478999999876  3444555554332  2322     225788999999875

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.59  E-value=0.069  Score=40.24  Aligned_cols=35  Identities=11%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+.|++|||| |.+|.-+|..|...|.  ++.+++..+
T Consensus        22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            3569999998 9999999999998777  999999765

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.42  E-value=0.11  Score=41.30  Aligned_cols=67  Identities=24%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      -++++|+|- |.+|..+|..+...+-  .+..+++++.++... ..+..   ++      ..++++++.+|+||.+-|.+
T Consensus        23 Gk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdGf---~v------~~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          23 GKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEGF---NV------VTLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTTC---EE------CCHHHHTTTCSEEEECCSSS
T ss_pred             CCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcCC---cc------CchhHccccCcEEEEcCCCC
Confidence            359999998 9999999999987776  899999987443321 12211   33      23579999999999986643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.35  E-value=0.081  Score=40.44  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..||+|||| |++|.-+|..|...+.  ++.+++..+
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            359999998 9999999999998887  999999864

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.036  Score=44.75  Aligned_cols=80  Identities=24%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc----HHHHHHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        25 ~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~----~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      ..+..+|+|||.+.-||..++..|.+.+.  .+.++|.+..    ......+.+.. ...+...+ .+++++....||+|
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~lk~~~~~aDIv  101 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHH-VEDLGEYS-EDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCE-EEEEEECC-HHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeec-cccccccc-hhHHhhccccCCEE
Confidence            34557999999967889999999998876  7888887531    11001111111 11222211 12356667799999


Q ss_pred             EEcCCCCC
Q 019519          101 IIPAGVPR  108 (340)
Q Consensus       101 i~~ag~~~  108 (340)
                      |...|.|.
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99988764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.19  E-value=0.039  Score=47.24  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .||+|||| |.+|.++|..|...|+  ++.++|...
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            48999998 9999999999999998  999999764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.16  E-value=0.046  Score=45.09  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=26.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC----cceEEEEeC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDI   62 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~----~~el~L~D~   62 (340)
                      |||+|||| |-+|.+.|+.|++.++    +.++.+++.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            79999998 9999999999988753    345666653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.11  E-value=0.054  Score=44.10  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=29.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ||+|||| |..|.+.|..|.+.|+ .+|+++|..+
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            8999998 9999999999999884 3699998764

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.08  E-value=0.16  Score=41.03  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=46.4

Q ss_pred             CCeEEEEcC-CCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHH---hcCCCCceEEEEecCCccccccCCCCEE
Q 019519           28 DRKVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADV---GHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        28 ~~KI~IiGa-aG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl---~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      ..||+++|= ..+|..+++..+..-|.  ++.++-...   ......++   .... ...+..+   +|++++++++|+|
T Consensus         5 ~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~d~~eai~~aDvV   78 (185)
T d1dxha2           5 DISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEES-GAKLTLT---EDPKEAVKGVDFV   78 (185)
T ss_dssp             GCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHH-TCEEEEE---SCHHHHTTTCSEE
T ss_pred             CCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhcc-CCeEEEE---eChhhccccccEE
Confidence            469999994 23678888877777776  999997653   12222222   1111 2345543   5778999999998


Q ss_pred             EEcC
Q 019519          101 IIPA  104 (340)
Q Consensus       101 i~~a  104 (340)
                      ..+.
T Consensus        79 yt~~   82 (185)
T d1dxha2          79 HTDV   82 (185)
T ss_dssp             EECC
T ss_pred             Eeeh
Confidence            8864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.14  Score=38.03  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .||+|+|+ |+.|.-++.....-|+  +++.+|.++
T Consensus        12 ~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          12 TRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            59999998 9999999988887787  999999875

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.83  E-value=0.04  Score=45.53  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCC-----cceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~-----~~el~L~D~~~   64 (340)
                      ++.||+|||| |.-|.+.|+.|...++     .-++.++|..+
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            3579999998 9999999999887652     13799999876

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.66  E-value=0.072  Score=44.04  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=28.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .||+|||| |..|.+.|..|...+...+|.++|..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            49999998 999999999887654333999999875

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.60  E-value=0.34  Score=38.14  Aligned_cols=72  Identities=13%  Similarity=0.099  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--c-HHHH---HHHhcCCCCceEEEEecCCccccccCCCCEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PGVA---ADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~-~~~~---~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (340)
                      ...||+++|-..+|..+++..+..-+.  ++.++-...  . ....   .+..+.. ...+..+   .|+.+++++||+|
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~d~~ea~~~advi   76 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAES-GGSFELL---HDPVKAVKDADVI   76 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHH-TCEEEEE---SCHHHHTTTCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcc-cceEEEe---cCHHHHhhhccEE
Confidence            357999999855677777777776676  899997654  1 2211   1111111 2345543   5678999999999


Q ss_pred             EEcC
Q 019519          101 IIPA  104 (340)
Q Consensus       101 i~~a  104 (340)
                      ..+-
T Consensus        77 y~~~   80 (163)
T d1pvva2          77 YTDV   80 (163)
T ss_dssp             EECC
T ss_pred             eecc
Confidence            9864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.59  E-value=0.1  Score=39.25  Aligned_cols=36  Identities=17%  Similarity=0.012  Sum_probs=30.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..+.|++|||| |.+|.-+|..+...|.  +|.|+..++
T Consensus        18 ~~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          18 YCPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             SCCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             cCCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            34579999998 9999999999988776  888887654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.54  E-value=1.4  Score=36.64  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=62.8

Q ss_pred             eEEEE-cCCCChHHHHHHHHHh---CCCcceEEEEeCCC--cHHHHHHHhcCCCCceEEEEe-cCCccc---ccc-----
Q 019519           30 KVAVL-GAAGGIGQPLALLMKL---NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG---QAL-----   94 (340)
Q Consensus        30 KI~Ii-GaaG~VG~~~a~~l~~---~~~~~el~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~al-----   94 (340)
                      ||+|| ||++-+|..++..|+.   .|.  .|++.|+++  ++..+.++.......++.... +-+|.+   +.+     
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            66555 9988999999999975   455  899999876  344445554332223444432 112211   111     


Q ss_pred             ------CCCCEEEEcCCCCC--CC----CCCH---HHHHHHHHHHHHHHHHHHHHhC-----CCcEEEEecC
Q 019519           95 ------EDSDVVIIPAGVPR--KP----GMTR---DDLFNINAGIVKDLCSAIAKYC-----PNAIVNMISN  146 (340)
Q Consensus        95 ------~~aDiVi~~ag~~~--~~----g~~r---~~~~~~N~~i~~~i~~~i~~~~-----p~a~viv~tN  146 (340)
                            -+-|++|..+|...  ..    ..+.   ...+.-|+.-...+.+.+..+-     +.+.||+++.
T Consensus        85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS  156 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccc
Confidence                  13457777777532  11    2232   2345566665555555554432     2456676654

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.52  E-value=0.2  Score=41.40  Aligned_cols=74  Identities=19%  Similarity=0.331  Sum_probs=46.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEec--------------------
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMG--------------------   86 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~--------------------   86 (340)
                      ..||.|||. |.-|.+++..+...++ ..+.+.+|.+.   +  +|.+.....++..-..                    
T Consensus        15 ~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~---~--~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e   88 (209)
T d2vapa1          15 KAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA---Q--QLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKE   88 (209)
T ss_dssp             CCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH---H--HHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHH
T ss_pred             CCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH---H--HHhcCCcchhcccccccccccccccchHHHHHHHHH
Confidence            369999998 9999999988887664 35888888753   1  2333322222221000                    


Q ss_pred             -CCccccccCCCCEEEEcCCCC
Q 019519           87 -NDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        87 -~~d~~~al~~aDiVi~~ag~~  107 (340)
                       .....+.++++|.||++||+.
T Consensus        89 ~~~~I~~~l~~~d~vfi~AGlG  110 (209)
T d2vapa1          89 SAEEIKAAIQDSDMVFITCGLG  110 (209)
T ss_dssp             THHHHHHHHTTCSEEEEEEETT
T ss_pred             HHHHHHHhccCCCEEEEEEeCC
Confidence             013345678899999988765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.37  E-value=0.095  Score=41.99  Aligned_cols=71  Identities=18%  Similarity=0.329  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHhcCCC---CceEEEEecCCccccccCCCCEEE
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      +..+|.|+|+ |.++.++++.|...+   +|.+++++.  ++..+.++.....   ...+..    .++...+.++|+||
T Consensus        17 ~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dliI   88 (177)
T d1nvta1          17 KDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDIII   88 (177)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhhc
Confidence            3469999998 989999888886433   899998875  2333334432211   112332    24456678999999


Q ss_pred             EcCC
Q 019519          102 IPAG  105 (340)
Q Consensus       102 ~~ag  105 (340)
                      .+-.
T Consensus        89 n~tp   92 (177)
T d1nvta1          89 NATP   92 (177)
T ss_dssp             ECSC
T ss_pred             cCCc
Confidence            9743

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.24  E-value=0.16  Score=37.85  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..+.||+|||| |.+|.-+|..+...|.  ++.++...+
T Consensus        20 ~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            34679999998 9999999999998877  888888654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.075  Score=46.23  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      |.+|+|||| |..|.++|..|.+.|.  +|.++|.++
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            458999998 9999999999998876  899999865

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.89  E-value=0.12  Score=38.74  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+|+|+|| |++|.-+|..|...+.  ++.|++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            58999998 9999999999998887  999999865

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.89  E-value=0.35  Score=40.42  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=29.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..|+||++-+|..++..|+..|.  +|++.|.+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            36889988999999999999998  999999886

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.61  E-value=0.77  Score=38.25  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEe-cCCccc----------ccc
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLG----------QAL   94 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al   94 (340)
                      |.++.|.|+||++-+|..++..|+..|....|++.+.++.+.  .++.... ..++.... +-+|.+          +.+
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~--~~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   77 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH--HHHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence            345689999999999999999999887534678887765221  1233222 12333322 112211          111


Q ss_pred             --CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHH----HHHHHHHHHHHHh
Q 019519           95 --EDSDVVIIPAGVPRK--P--GMTR---DDLFNINA----GIVKDLCSAIAKY  135 (340)
Q Consensus        95 --~~aDiVi~~ag~~~~--~--g~~r---~~~~~~N~----~i~~~i~~~i~~~  135 (340)
                        .+-|++|..||....  +  ..+.   ...+..|+    .+.+.+.+.+++.
T Consensus        78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~  131 (250)
T d1yo6a1          78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNA  131 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH
T ss_pred             CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence              248999999996322  1  2222   22344444    4556666666654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.60  E-value=0.12  Score=39.49  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPL   53 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~   53 (340)
                      |||+|.|++|.+|+.++..+...++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            7999999889999999877766665

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.49  E-value=0.098  Score=45.68  Aligned_cols=33  Identities=21%  Similarity=0.148  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..|+|||| |..|...|..|.+.++  +++++|..+
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            48999998 9999999999999888  899999865

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.24  Score=41.44  Aligned_cols=44  Identities=23%  Similarity=0.275  Sum_probs=35.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC--cHHHHHHHh
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVG   73 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~--~~~~~~dl~   73 (340)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  .+....++.
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~   50 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG   50 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC
Confidence            44667889999999999999999998  899999987  344444553

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.42  E-value=0.099  Score=44.92  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=29.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+|+|||| |-+|.++|+.|+..+. .+|+|+|.+.
T Consensus         2 ~dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            38999998 9999999999998874 3799999764

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.33  E-value=0.28  Score=38.49  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=46.2

Q ss_pred             CCeEEEEc-CCCChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcC--CCCceEEEEecCCccccccCCCCEEE
Q 019519           28 DRKVAVLG-AAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHI--NTRSEVAGYMGNDQLGQALEDSDVVI  101 (340)
Q Consensus        28 ~~KI~IiG-aaG~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~--~~~~~v~~~~~~~d~~~al~~aDiVi  101 (340)
                      ..||+++| +..+|-.+++..+..-|.  +++++-...   ...........  .....+..+   +|+++++++||+|.
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~---~d~~~ai~~aDviy   77 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKETDGSVSFT---SNLEEALAGADVVY   77 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEE---SCHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhcCCceEEE---ecHHHhhhhhhhee
Confidence            46999999 324677888777776676  888887643   12221111111  012356654   57789999999999


Q ss_pred             EcC
Q 019519          102 IPA  104 (340)
Q Consensus       102 ~~a  104 (340)
                      .+.
T Consensus        78 t~~   80 (161)
T d1vlva2          78 TDV   80 (161)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.31  E-value=0.26  Score=38.74  Aligned_cols=97  Identities=16%  Similarity=0.187  Sum_probs=58.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcc-ccccCCCCEEEEcCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQL-GQALEDSDVVIIPAGV  106 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~-~~al~~aDiVi~~ag~  106 (340)
                      .+|.|+|+ |.+|...+..+...+.  +++.+|.++ ....+.++.   .. .+..+....+. +......|+|+.+.+.
T Consensus        29 ~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG---a~-~~i~~~~~~~~~~~~~~~~d~vi~~~~~  101 (168)
T d1piwa2          29 KKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG---AD-HYIATLEEGDWGEKYFDTFDLIVVCASS  101 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT---CS-EEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             CEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC---Cc-EEeeccchHHHHHhhhcccceEEEEecC
Confidence            49999997 9999988887777776  888899876 344555554   11 22222111222 2334678999998765


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      +.....+                ..++-..|.+.+++++-|.
T Consensus       102 ~~~~~~~----------------~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2         102 LTDIDFN----------------IMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             STTCCTT----------------TGGGGEEEEEEEEECCCCC
T ss_pred             CccchHH----------------HHHHHhhccceEEEecccc
Confidence            4221110                1233345888888886543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.27  E-value=0.18  Score=37.29  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=29.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..+|+|+|+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        22 ~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            359999998 9999999999987776  899998764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.24  E-value=0.15  Score=42.79  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      -|.|+||++-+|..++..|+..|.  +|++.|.++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~   35 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            457779989999999999999998  899999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.14  E-value=0.18  Score=40.16  Aligned_cols=94  Identities=20%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcccccc------CCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aDiVi  101 (340)
                      .+|+|+|+ |.||...+..+...+. ..|+..|.++ ....+.++.-   . .+..+ ...++.+.+      +++|+||
T Consensus        29 ~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa---~-~~i~~-~~~~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          29 SSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGA---T-DILNY-KNGHIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTC---S-EEECG-GGSCHHHHHHHHTTTSCEEEEE
T ss_pred             CEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCc---c-ccccc-cchhHHHHHHHHhhccCcceEE
Confidence            48999997 9999988887776653 4699999876 3344444441   1 11111 112222222      4599999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      .+.|.+.               .+.+.   ++-..|.+.+++++.|
T Consensus       102 d~~g~~~---------------~~~~a---~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2         102 MAGGGSE---------------TLSQA---VKMVKPGGIISNINYH  129 (174)
T ss_dssp             ECSSCTT---------------HHHHH---HHHEEEEEEEEECCCC
T ss_pred             EccCCHH---------------HHHHH---HHHHhcCCEEEEEeec
Confidence            9987541               11122   2223588888887643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.12  E-value=0.12  Score=41.65  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=44.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCC---C--------CceEEEEecCCccccccC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHIN---T--------RSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~---~--------~~~v~~~~~~~d~~~al~   95 (340)
                      |.||+|.|. |.+|..++-.+..++-+.-+.+.|..+. .....-..+..   .        ...+..   ..++...+.
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV---AGTVEDLIK   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC---CCCHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec---CCchhhhhh
Confidence            569999997 9999999988887765444455565442 21111111110   0        001111   134556678


Q ss_pred             CCCEEEEcCCC
Q 019519           96 DSDVVIIPAGV  106 (340)
Q Consensus        96 ~aDiVi~~ag~  106 (340)
                      ++|+||.+-|.
T Consensus        77 ~vDiViecTG~   87 (178)
T d1b7go1          77 TSDIVVDTTPN   87 (178)
T ss_dssp             HCSEEEECCST
T ss_pred             cCCEEEECCCC
Confidence            99999998653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.09  E-value=0.12  Score=41.71  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .-|+|||| |..|.+.|..|+..|.  +|.++|.++
T Consensus         6 yDviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           6 YDVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            35899998 9999999999999998  899999875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.09  E-value=0.11  Score=43.96  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=28.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      -|+|||| |.+|.++|+.|+..+.  +++|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899998 9999999999999987  899998653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=0.14  Score=47.13  Aligned_cols=35  Identities=31%  Similarity=0.527  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            469999998 9999999999998885 6899999864

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.59  Score=37.35  Aligned_cols=70  Identities=13%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHHHhCCCcceEEEEeCCC---cHHH---HHHHhcCCCCceEEEEecCCccccccCCCCE
Q 019519           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN---TPGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (340)
Q Consensus        28 ~~KI~IiGaaG--~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~---~~dl~~~~~~~~v~~~~~~~d~~~al~~aDi   99 (340)
                      ..||+++|= |  +|..+++..+..-|.  +++++-..+   ....   +.+..... ...+..+   .|.+++++++|+
T Consensus         5 ~l~i~~vGD-~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~~-g~~~~~~---~d~~~a~~~aDv   77 (183)
T d1duvg2           5 EMTLVYAGD-ARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQN-GGNITLT---EDVAKGVEGADF   77 (183)
T ss_dssp             GCEEEEESC-TTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHHT-TCEEEEE---SCHHHHHTTCSE
T ss_pred             CCEEEEEcC-CccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHhc-CCceEEE---echhhccccCCE
Confidence            479999994 4  577777766666576  899997654   1221   22222111 2345543   577899999999


Q ss_pred             EEEcC
Q 019519          100 VIIPA  104 (340)
Q Consensus       100 Vi~~a  104 (340)
                      |..+-
T Consensus        78 vyt~~   82 (183)
T d1duvg2          78 IYTDV   82 (183)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            98864

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=89.91  E-value=0.021  Score=50.25  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh----CCC-----cceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccC--C
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL----NPL-----VSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALE--D   96 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~----~~~-----~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~   96 (340)
                      .||+|.|| |..|..++..+..    .++     ...++++|... ......|+.+... ..........++.+.++  +
T Consensus        26 ~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~-~~a~~~~~~~~l~~~i~~vk  103 (298)
T d1gq2a1          26 HTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKE-HFAHEHCEMKNLEDIVKDIK  103 (298)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGG-GGCBSCCCCCCHHHHHHHHC
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHH-HHHHHhhhhhhhHHHhhccC
Confidence            49999998 9999888766642    232     24799999865 1111112222110 00000001123344443  3


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        97 aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      .+++|-+.+.+   |.           +.+++.+.|.+.+++.+|+-.|||..
T Consensus       104 ptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~  142 (298)
T d1gq2a1         104 PTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTS  142 (298)
T ss_dssp             CSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCC
Confidence            66777766554   22           22334556778899999999999975

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.35  E-value=0.48  Score=35.33  Aligned_cols=94  Identities=10%  Similarity=-0.014  Sum_probs=55.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcc----ccccCCCCEEEEcCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIPAG  105 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVi~~ag  105 (340)
                      .|.|+|. |.+|..++..|..  .  +++++|.++....  .+..... .-+.+  +.+|.    +..+.+|+.+|++..
T Consensus         2 HivI~G~-g~~g~~l~~~L~~--~--~i~vi~~d~~~~~--~~~~~~~-~~i~G--d~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELRG--S--EVFVLAEDENVRK--KVLRSGA-NFVHG--DPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSCG--G--GEEEEESCTTHHH--HHHHTTC-EEEES--CTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEEECC-CHHHHHHHHHHcC--C--CCEEEEcchHHHH--HHHhcCc-ccccc--ccCCHHHHHHhhhhcCcEEEEecc
Confidence            6889998 9999999988743  2  5788888773322  2222221 11222  12222    134689999999742


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      -.           ..|..    ++..+++++|+..++..+|--
T Consensus        72 ~d-----------~~n~~----~~~~~r~~~~~~~iia~~~~~   99 (129)
T d2fy8a1          72 SD-----------SETIH----CILGIRKIDESVRIIAEAERY   99 (129)
T ss_dssp             SH-----------HHHHH----HHHHHHHHCSSSCEEEECSSG
T ss_pred             ch-----------hhhHH----HHHHHHHHCCCceEEEEEcCH
Confidence            11           24444    344567788987666555433

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=89.10  E-value=1.6  Score=36.16  Aligned_cols=113  Identities=13%  Similarity=0.118  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-----cHHHHHHHhcCCCCceEEEEe-cCCccc------ccc--
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYM-GNDQLG------QAL--   94 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~-~~~d~~------~al--   94 (340)
                      .-|.|+||+|.+|..++..|+..|. ..|+|+..+.     ......++....  .++.... +-+|..      +.+  
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhhccccc
Confidence            4788999999999999999998874 3688886542     233344454332  2444332 111211      111  


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 019519           95 -EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (340)
Q Consensus        95 -~~aDiVi~~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  145 (340)
                       -..|.||+.+|.....   .++..   ..+.-|+.....+.+.+... +.+.++++|
T Consensus        87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             cccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence             2578899988865432   22322   23455777666666665543 345555554

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=88.85  E-value=1.7  Score=32.84  Aligned_cols=116  Identities=13%  Similarity=0.073  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCC---ChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           28 DRKVAVLGAAG---GIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        28 ~~KI~IiGaaG---~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +..|+||||+-   ..|..+...|...++  .+.++-.+....   ++.      ....+   .++.+.=...|+|++..
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~---~i~------g~~~~---~~l~~i~~~iD~v~v~~   78 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGE---ELF------GEEAV---ASLLDLKEPVDILDVFR   78 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTS---EET------TEECB---SSGGGCCSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccc---eee------ceecc---cchhhccCCCceEEEec
Confidence            45899999853   567778888888888  788886543100   000      12222   33333225679999873


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEec-c-chhHHHH
Q 019519          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T-TLDVVRA  181 (340)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-~-~ld~~R~  181 (340)
                                      +.+.+.++.+++.+.+.+++++.-.--.+-+    .+..+.+|    -++++= | ..+..||
T Consensus        79 ----------------p~~~v~~~v~~~~~~g~k~i~~q~G~~~~e~----~~~a~~~G----i~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          79 ----------------PPSALMDHLPEVLALRPGLVWLQSGIRHPEF----EKALKEAG----IPVVADRCLMVEHKRL  133 (136)
T ss_dssp             ----------------CHHHHTTTHHHHHHHCCSCEEECTTCCCHHH----HHHHHHTT----CCEEESCCHHHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHhhCCCeEEEecCccCHHH----HHHHHHcC----CEEEcCCccHHHHHHh
Confidence                            2344455555555667776554322222222    23356677    478875 7 4555554

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=88.75  E-value=0.56  Score=36.39  Aligned_cols=67  Identities=12%  Similarity=0.042  Sum_probs=41.8

Q ss_pred             CCeEEEEcCCCC--hHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEE
Q 019519           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaaG~--VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      ..||+++|=..+  |..+++..+...+.  +++++-..+   ....   +... ....+..+   +|+++++++||+|..
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~---~~~~-~~~~~~~~---~d~~eai~~aDvvy~   73 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKE---ILDE-LNYPVKEV---ENPFEVINEVDVLYV   73 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHH---HHTT-CCSCEEEE---SCGGGTGGGCSEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchh---hccc-CCCeEEEE---eCHHHHhhcCCeEEE
Confidence            469999996323  78888877776665  555544333   1111   1111 12355554   577899999999887


Q ss_pred             c
Q 019519          103 P  103 (340)
Q Consensus       103 ~  103 (340)
                      +
T Consensus        74 ~   74 (153)
T d1pg5a2          74 T   74 (153)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=88.53  E-value=0.32  Score=38.66  Aligned_cols=94  Identities=12%  Similarity=0.177  Sum_probs=56.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcccc---cc------CCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQ---AL------EDSD   98 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~---al------~~aD   98 (340)
                      -+|.|+|| |.||...+..+...|. ..|+.+|.++ ....+.++.   .. .+... ..++..+   .+      .++|
T Consensus        30 ~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lG---a~-~vi~~-~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          30 KTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIG---AD-LTLNR-RETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTT---CS-EEEET-TTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CEEEEECC-Cccchhheeccccccc-cccccccccccccccccccc---ce-EEEec-cccchHHHHHHHHHhhCCCCce
Confidence            38999997 9999988888877764 4799999876 333444443   11 12111 1122211   11      3689


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        99 iVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +||.+.|.+.               .+.+   .++-..|.+.++++..+
T Consensus       103 vvid~vG~~~---------------~~~~---a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2         103 FILEATGDSR---------------ALLE---GSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             EEEECSSCTT---------------HHHH---HHHHEEEEEEEEECCCC
T ss_pred             EEeecCCchh---------------HHHH---HHHHhcCCCEEEEEeec
Confidence            9999987641               1112   22333578888877543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.46  E-value=1.1  Score=35.29  Aligned_cols=97  Identities=19%  Similarity=0.171  Sum_probs=59.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCC-cccc-----ccCCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGND-QLGQ-----ALEDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~-d~~~-----al~~aDiVi  101 (340)
                      .+|+|+|+ |.+|...+..+...+. ..|+..|.++ ....+.++...    .+......+ ..+.     .-.++|+||
T Consensus        30 ~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~d~vi  103 (174)
T d1e3ia2          30 STCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGAT----DCLNPRELDKPVQDVITELTAGGVDYSL  103 (174)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             CEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCC----cccCCccchhhhhhhHhhhhcCCCcEEE
Confidence            59999997 9999998888877763 5788999987 44455555421    111111101 1111     126899999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVN  149 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~d  149 (340)
                      .+.|.+               ..+   -..++-..| .+.++++..|.+
T Consensus       104 e~~G~~---------------~~~---~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2         104 DCAGTA---------------QTL---KAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             ESSCCH---------------HHH---HHHHHTBCTTTCEEEECCCSSS
T ss_pred             Eecccc---------------hHH---HHHHHHhhcCCeEEEecCCCCC
Confidence            998754               111   122333346 488888988866

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=88.46  E-value=0.64  Score=36.08  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=42.6

Q ss_pred             CCCeEEEEcC--CCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcC
Q 019519           27 PDRKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (340)
Q Consensus        27 ~~~KI~IiGa--aG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~a  104 (340)
                      +..||+++|=  .+.|..+++..+..-|.  ++++....+.       ....  ..+..+   .|++++++++|+|..+-
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~~--~~~~~~---~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDEE--NTFGTY---VSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hccc--cceeEE---EechhccccCceeeeeE
Confidence            3579999995  35688888887776665  7777765431       1001  123333   45679999999998863

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.44  E-value=0.11  Score=39.44  Aligned_cols=36  Identities=17%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      +.+|+|+|| |..|..++..+....-+.=+.++|.+.
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            469999998 999999987654443345578899875

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.40  E-value=1.5  Score=36.33  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHh---CCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~---~~~~~el~L~D~~~   64 (340)
                      |+.|.|+||++-+|..++..|+.   .+.  .|++.+.++
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~   39 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNR   39 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCT
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            45799999999999999987764   455  899999887

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.18  E-value=0.81  Score=35.31  Aligned_cols=95  Identities=18%  Similarity=0.233  Sum_probs=55.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCccc----cccCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLG----QALEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~----~al~~aDiVi~~  103 (340)
                      .+|+|.|+ |.+|...+..+...+.  ++...|.++. ...+.++.   .. .+... ...|..    +...+.|.+|+.
T Consensus        29 ~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~G---a~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~  100 (168)
T d1rjwa2          29 EWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKELG---AD-LVVNP-LKEDAAKFMKEKVGGVHAAVVT  100 (168)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT---CS-EEECT-TTSCHHHHHHHHHSSEEEEEES
T ss_pred             CEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhcC---cc-eeccc-ccchhhhhcccccCCCceEEee
Confidence            48999997 9999988888887776  8899987652 22333322   11 12111 112222    224567777777


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      ++.+               ..+.   ..++-..|.+.++++..|.+
T Consensus       101 ~~~~---------------~~~~---~a~~~l~~~G~i~~~g~~~~  128 (168)
T d1rjwa2         101 AVSK---------------PAFQ---SAYNSIRRGGACVLVGLPPE  128 (168)
T ss_dssp             SCCH---------------HHHH---HHHHHEEEEEEEEECCCCSS
T ss_pred             cCCH---------------HHHH---HHHHHhccCCceEecccccC
Confidence            6432               1122   22223358888888876654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.14  E-value=0.38  Score=38.01  Aligned_cols=94  Identities=19%  Similarity=0.264  Sum_probs=56.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcccccc-----CCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL-----EDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-----~~aDiVi~  102 (340)
                      .+|.|+|+ |.+|...+..+...+. ..+...|.++ ....+.++.-    ..+... ...|+.+.+     .+.|+||.
T Consensus        30 ~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga----~~~i~~-~~~~~~~~i~~~t~gg~D~vid  102 (174)
T d1f8fa2          30 SSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA----THVINS-KTQDPVAAIKEITDGGVNFALE  102 (174)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC----SEEEET-TTSCHHHHHHHHTTSCEEEEEE
T ss_pred             CEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC----eEEEeC-CCcCHHHHHHHHcCCCCcEEEE
Confidence            48999998 9999998887776654 3677888776 3344445531    122211 223333332     24899999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +.|.+               ..+.+.   ++-..|.+.+++++.|
T Consensus       103 ~~G~~---------------~~~~~~---~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         103 STGSP---------------EILKQG---VDALGILGKIAVVGAP  129 (174)
T ss_dssp             CSCCH---------------HHHHHH---HHTEEEEEEEEECCCC
T ss_pred             cCCcH---------------HHHHHH---HhcccCceEEEEEeec
Confidence            87643               112222   2223578888887654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=88.11  E-value=0.53  Score=39.13  Aligned_cols=70  Identities=14%  Similarity=0.244  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCCCh----HHHHHHHHHhCCCcceEE-EEeCCCcH--HHHHHHhcCCCCceEEEEecCCcccccc--CCC
Q 019519           27 PDRKVAVLGAAGGI----GQPLALLMKLNPLVSRLA-LYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQAL--EDS   97 (340)
Q Consensus        27 ~~~KI~IiGaaG~V----G~~~a~~l~~~~~~~el~-L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al--~~a   97 (340)
                      +++||+|||+ |..    +......+.....-.+|+ ++|.+...  ..+..+   .. .....+   +|+++.+  .+-
T Consensus        15 k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~---~~-~~~~~~---~~~~~l~~~~~i   86 (237)
T d2nvwa1          15 RPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL---QL-KHATGF---DSLESFAQYKDI   86 (237)
T ss_dssp             CCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT---TC-TTCEEE---SCHHHHHHCTTC
T ss_pred             CCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc---cc-ccceee---cchhhccccccc
Confidence            5689999998 764    344444554432222655 88887522  222221   11 122333   3555655  467


Q ss_pred             CEEEEcC
Q 019519           98 DVVIIPA  104 (340)
Q Consensus        98 DiVi~~a  104 (340)
                      |+|+++.
T Consensus        87 D~V~i~t   93 (237)
T d2nvwa1          87 DMIVVSV   93 (237)
T ss_dssp             SEEEECS
T ss_pred             ceeeccC
Confidence            7888763

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=88.08  E-value=0.046  Score=48.10  Aligned_cols=102  Identities=18%  Similarity=0.282  Sum_probs=58.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh----CCC-----cceEEEEeCCCc--HHHHHHHhcC--CCCceEEEEecCCccccccC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL----NPL-----VSRLALYDIANT--PGVAADVGHI--NTRSEVAGYMGNDQLGQALE   95 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~----~~~-----~~el~L~D~~~~--~~~~~dl~~~--~~~~~v~~~~~~~d~~~al~   95 (340)
                      .||+|.|| |..|..++..|+.    .|+     ...++++|.+-.  +.. .|+...  .+.....   ...++.++++
T Consensus        26 ~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r-~d~~~~k~~~a~~~~---~~~~l~~~i~  100 (308)
T d1o0sa1          26 EKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNR-KEMNPRHVQFAKDMP---ETTSILEVIR  100 (308)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTC-SSCCGGGTTTCBSSC---CCCCHHHHHH
T ss_pred             cEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCC-cccCHHHHHHHHhcc---cCCcHHHHHh
Confidence            59999998 9999988776543    333     235999998641  111 122211  1100000   1123334443


Q ss_pred             --CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519           96 --DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus        96 --~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                        .-+++|-+.+.+   |.           +.+++.+.|.+.+++.+|+-.|||..
T Consensus       101 ~~kptvliG~s~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1         101 AARPGALIGASTVR---GA-----------FNEEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             HHCCSEEEECSSCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             ccccccEEeccccc---CC-----------CCHHHHHHHHhhCCCcEEEEccCCCC
Confidence              235666655543   22           12344567778899999999999975

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.70  E-value=0.34  Score=36.35  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..+.+++|+|| |.+|.-+|..+...|.  ++.+++..+
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            45679999998 9999999998887776  999998754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=87.57  E-value=0.36  Score=39.53  Aligned_cols=51  Identities=24%  Similarity=0.281  Sum_probs=37.8

Q ss_pred             hhhhhhhccCccccCCCCCCCCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ...+|...+-.|..+.     +..+|+|-|. |+||+.++..|...|.  .|+.+|++.
T Consensus        10 ~~~~~~~~~~~g~~~L-----~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          10 FEAMKATVAHRGLGSL-----DGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             HHHHHHHHHHTTCCCS-----TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             HHHHHHHHHHhCCCCC-----CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            4445544444454322     3469999997 9999999999998886  899999875

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.42  E-value=0.23  Score=40.99  Aligned_cols=33  Identities=30%  Similarity=0.525  Sum_probs=30.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+.|+||++-+|..++..|+..|.  +|++.|+++
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            678889999999999999999997  999999875

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.26  E-value=0.19  Score=41.19  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=61.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEE---------------------ecC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGY---------------------MGN   87 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~---------------------~~~   87 (340)
                      +|-|||- |..|.+++..+...++ -.+++.+|.|.   +.++..+..  .++..-                     ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~~L~~~~~~--~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---QALLMSDAD--VKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---HHHHHCCCS--EEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---HHHhcCCcc--hhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6778997 8889999999888764 34778888653   222222221  122110                     001


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ....+.++++|+||++||+.   |-+.    .--.|++-+++++..    --.+-++|-|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlG---GgTG----tGaaPviA~iake~g----~l~v~ivt~PF  126 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEG---GGTG----TGGAPVVASIARKLG----ALTVGVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETT---SSHH----HHHHHHHHHHHHHHT----CEEEEEEEECC
T ss_pred             HHHHHHhcCCCEEEEEEecC---CCCC----cchHHHHHHHHHHcC----CcEEEEEecCh
Confidence            23457789999999999875   3322    233677777777652    12344566664

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=86.78  E-value=0.25  Score=40.78  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      -|+|||| |..|...|..|.+.++  +++|+|.+.
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            5899998 9999999999999998  999999875

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.60  E-value=5.5  Score=33.47  Aligned_cols=114  Identities=14%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             CeEEE-EcCCCChHHHHHHHHHhCCCcceEEEEeC---CC--cHHH---HHHHhcCCCCceEEEEe-cCCcccc------
Q 019519           29 RKVAV-LGAAGGIGQPLALLMKLNPLVSRLALYDI---AN--TPGV---AADVGHINTRSEVAGYM-GNDQLGQ------   92 (340)
Q Consensus        29 ~KI~I-iGaaG~VG~~~a~~l~~~~~~~el~L~D~---~~--~~~~---~~dl~~~~~~~~v~~~~-~~~d~~~------   92 (340)
                      +||++ +||++-+|..++..|+..|.  .+++++.   +.  ....   +..+...  ..++.... +-+|.++      
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~   77 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACP--PGSLETLQLDVRDSKSVAAARE   77 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCC--TTSEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhcc--CCceEEEeccccchHhhhhhhh
Confidence            37765 59999999999999998875  4444432   21  1111   1122221  12333332 1122111      


Q ss_pred             -c-cCCCCEEEEcCCCCCCCC---CC---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 019519           93 -A-LEDSDVVIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus        93 -a-l~~aDiVi~~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                       + -...|++|..+|......   .+   -...+.-|+    ...+.+.+.|.+.. .+.||+++.-
T Consensus        78 ~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS~  143 (285)
T d1jtva_          78 RVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSV  143 (285)
T ss_dssp             TCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEG
T ss_pred             hccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEech
Confidence             0 146899999888643221   22   222334454    46667777777654 5666666543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.44  E-value=0.26  Score=36.85  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .+.+++|||| |.+|.-+|..+...|.  ++.++...+
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            4579999998 9999999999987776  999998754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=0.25  Score=42.20  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=28.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      |+|||| |..|.+.|..|...|+  ++.++|..+
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            789998 9999999999999998  899998654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=86.28  E-value=3.3  Score=34.35  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=27.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        31 I~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..|+||++-+|..++..|+..|.  +|++.|.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            45679988999999999999997  899988765

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.11  E-value=0.44  Score=37.54  Aligned_cols=94  Identities=19%  Similarity=0.203  Sum_probs=54.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      .+|.|.||+|.||+..+..+...|.  +++..+.++ ....+.++.   .. .+..+....+....-+++|+|+-+.|..
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lG---a~-~~i~~~~~~~~~~~~~g~D~v~d~~G~~  102 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALG---AE-EAATYAEVPERAKAWGGLDLVLEVRGKE  102 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTT---CS-EEEEGGGHHHHHHHTTSEEEEEECSCTT
T ss_pred             CEEEEEeccccchhhhhhhhccccc--ccccccccccccccccccc---cc-eeeehhhhhhhhhccccccccccccchh
Confidence            4899999889999999888888886  777777654 222333332   21 2222211111123347899999876511


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                                +          -..++-..|.+.++.+.+|.
T Consensus       103 ----------~----------~~~~~~l~~~G~~v~~G~~~  123 (171)
T d1iz0a2         103 ----------V----------EESLGLLAHGGRLVYIGAAE  123 (171)
T ss_dssp             ----------H----------HHHHTTEEEEEEEEEC----
T ss_pred             ----------H----------HHHHHHHhcCCcEEEEeCCC
Confidence                      1          12244445889998886653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.93  E-value=0.32  Score=37.54  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=25.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      ||+|||| |++|..+|..|.. +.  ++.+++..
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKE   31 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEecc
Confidence            9999998 9999999988864 33  89999864

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.77  E-value=0.26  Score=39.34  Aligned_cols=78  Identities=18%  Similarity=0.160  Sum_probs=44.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcH-HHHHHHhcCC----CCceEEE-----EecCCccccccCCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHIN----TRSEVAG-----YMGNDQLGQALEDSD   98 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~-~~~~dl~~~~----~~~~v~~-----~~~~~d~~~al~~aD   98 (340)
                      +||+|.|. |.+|..++..+..++.+.-+.+.|..+.. ...+-..+..    ....+..     .....++.+.+.++|
T Consensus         3 irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            79999998 99999998888777654445566665421 1111111110    0000000     001134556678999


Q ss_pred             EEEEcCCCC
Q 019519           99 VVIIPAGVP  107 (340)
Q Consensus        99 iVi~~ag~~  107 (340)
                      +||.+-|..
T Consensus        82 vViEcTG~f   90 (172)
T d2czca2          82 IIVDATPGG   90 (172)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCCC
Confidence            999987643

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=85.43  E-value=0.31  Score=38.30  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=24.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH-HHHhCCCcceEEE-EeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLAL-YDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~-~l~~~~~~~el~L-~D~~~   64 (340)
                      +++||+|+|+ |.+|..+.. .+...+. .|++. .|++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~-~el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKY-LEMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSS-EEEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCc-ceEEEEEecch
Confidence            3489999996 999987544 4434444 36655 47664

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.17  E-value=0.73  Score=36.08  Aligned_cols=70  Identities=23%  Similarity=0.218  Sum_probs=45.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCc-HHHHHHHhcCCCCceEEEEecCCcccccc------CCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aDiVi  101 (340)
                      .+|.|+||+|.+|+..+..+...+.  +++..|.++. ...+.++.   .. .+..+ ...|+.+.+      ++.|+|+
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a~-~vi~~-~~~d~~~~v~~~t~g~g~d~v~  102 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---AW-QVINY-REEDLVERLKEITGGKKVRVVY  102 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---CS-EEEET-TTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---Ce-EEEEC-CCCCHHHHHHHHhCCCCeEEEE
Confidence            4899999978899999888877776  8888888762 33334443   21 22222 234544433      4678888


Q ss_pred             EcCC
Q 019519          102 IPAG  105 (340)
Q Consensus       102 ~~ag  105 (340)
                      -+.|
T Consensus       103 d~~g  106 (179)
T d1qora2         103 DSVG  106 (179)
T ss_dssp             ECSC
T ss_pred             eCcc
Confidence            8875

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.49  E-value=0.69  Score=37.68  Aligned_cols=102  Identities=21%  Similarity=0.295  Sum_probs=59.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCC-cceEEEEeCCCcHHHHHHHhcCCCCceEEEEe---------------------cC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYM---------------------GN   87 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~~-~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~---------------------~~   87 (340)
                      +|.|||- |..|.+++..+...++ ..+++.+|.|..     +|.......++..-.                     ..
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~-----~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQ-----ALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTG-----GGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHH-----HHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            6889997 9999999998887764 348888888741     122222111111100                     00


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 019519           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (340)
Q Consensus        88 ~d~~~al~~aDiVi~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~  148 (340)
                      ....+.++++|.||++||+.   |-+.    ..-.|++.++++..   . --.+-++|=|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlG---GGTG----tgaapviA~~ake~---g-~lvvaivtlPF  126 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMG---GGTG----TGAAPIIAEVAKEM---G-ILTVAVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETT---SSHH----HHHHHHHHHHHHHT---T-CEEEEEEEECC
T ss_pred             HHHHHHhCCCCeEEEEecCC---CCcc----ccHHHHHHHHHHHc---C-CCEEEEEecch
Confidence            12356789999999999875   2222    23356666666543   2 22344456664

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.26  E-value=0.26  Score=39.23  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      |..+|+|||+ |..|...|..+...+.  +++++|..
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANL--QPVLITGM   37 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEee
Confidence            3469999998 9999999999998887  88888754

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=84.21  E-value=0.89  Score=38.39  Aligned_cols=115  Identities=21%  Similarity=0.239  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag~~  107 (340)
                      ..||++||-     ..+...+...+.  ++.++|.+...+            .. .   ....++.+..||+||+|+   
T Consensus       122 g~kV~vIG~-----~P~v~~l~~~~~--~~~VlE~~p~~g------------d~-p---~~~~~~lLp~aD~viiTG---  175 (251)
T d2h1qa1         122 GKKVGVVGH-----FPHLESLLEPIC--DLSILEWSPEEG------------DY-P---LPASEFILPECDYVYITC---  175 (251)
T ss_dssp             TSEEEEESC-----CTTHHHHHTTTS--EEEEEESSCCTT------------CE-E---GGGHHHHGGGCSEEEEET---
T ss_pred             CCEEEEEec-----chhHHHHHhcCC--cEEEEeCCCCCC------------CC-C---chHHHHhhhcCCEEEEEe---
Confidence            469999996     244445555554  899999875211            11 1   123367789999999997   


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCceEe-ccchhHHHHHHHHH
Q 019519          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG-VTTLDVVRAKTFYA  186 (340)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~~~sg~~~~~kviG-~~~ld~~R~~~~la  186 (340)
                                    ..++-.-.+.+=++++++..+++.=|...+.+.+   ++ .|    -..+| +-..|..++.+.++
T Consensus       176 --------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~l---f~-~G----v~~lag~~v~d~~~~~~~i~  233 (251)
T d2h1qa1         176 --------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPVL---FE-HG----LQELSGFMVKDNARAFRIVA  233 (251)
T ss_dssp             --------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGG---GG-TT----CSEEEEEEESCHHHHHHHHT
T ss_pred             --------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHHH---Hh-cC----CceEeEEEEeCHHHHHHHHH
Confidence                          2334444555556787764444555666655543   33 44    34444 45688888888887


Q ss_pred             HHcC
Q 019519          187 GKAN  190 (340)
Q Consensus       187 ~~l~  190 (340)
                      +--+
T Consensus       234 ~Ggg  237 (251)
T d2h1qa1         234 GAEK  237 (251)
T ss_dssp             TSSC
T ss_pred             cCCC
Confidence            5443

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.02  E-value=3.9  Score=30.38  Aligned_cols=86  Identities=20%  Similarity=0.246  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCC---CChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEE
Q 019519           26 VPDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        26 ~~~~KI~IiGaa---G~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      ..+..|+||||+   |..|..+...|...+ -.+|+.+.....     ++.      -+..+   .++.+.=...|.+++
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~-----~i~------G~~~y---~sl~dlp~~vDlvvi   70 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE-----EVQ------GVKAY---KSVKDIPDEIDLAII   70 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS-----EET------TEECB---SSTTSCSSCCSEEEE
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcc-----ccC------CeEee---cchhhcCCCCceEEE
Confidence            456799999997   677877777776544 458888865421     001      12222   233332246899998


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~vi  142 (340)
                      +.                ..+.+.++.+++.+.+-++.++
T Consensus        71 ~v----------------p~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          71 VV----------------PKRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             CS----------------CHHHHHHHHHHHHHHTCCEEEE
T ss_pred             ec----------------ChHHhHHHHHHHHHcCCCEEEE
Confidence            74                2455555666666666665444

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.74  E-value=1.3  Score=34.31  Aligned_cols=95  Identities=16%  Similarity=0.105  Sum_probs=55.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcccccc------CCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aDiVi  101 (340)
                      -+|.|+|++|.+|...+..+...+. .+|+..|.++ ....+.++.   .. .+ ......|+.+.+      .+.|+|+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~G---a~-~~-i~~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAG---AD-YV-INASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHT---CS-EE-EETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcC---Cc-ee-eccCCcCHHHHHHHHhhcccchhhh
Confidence            4899999779999888877766553 4899999876 233333333   11 11 111122322222      4689999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      .+.|.+               +.+..   .++-..|.+.+++++.+
T Consensus       103 d~~g~~---------------~~~~~---a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2         103 DLNNSE---------------KTLSV---YPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             ESCCCH---------------HHHTT---GGGGEEEEEEEEECCSS
T ss_pred             cccccc---------------hHHHh---hhhhcccCCEEEEeccc
Confidence            987643               11111   12333488888888544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=83.66  E-value=0.7  Score=35.86  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=27.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~   62 (340)
                      ..+|+|||| |.+|.-+|..|...+.-..|.+.+.
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            359999998 9999999999988776345666554

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.57  E-value=6.3  Score=28.55  Aligned_cols=81  Identities=12%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             CeEEEEcCC---CChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEEcCC
Q 019519           29 RKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (340)
Q Consensus        29 ~KI~IiGaa---G~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~~ag  105 (340)
                      +.|+|+||+   +..|..+...|+..++  +|+.+.....     ++.      -+..+   .++.+.=...|++++.. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~-----~i~------G~~~y---~sl~~lp~~~D~vvi~v-   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD-----EIE------GLKCY---RSVRELPKDVDVIVFVV-   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EET------TEECB---SSGGGSCTTCCEEEECS-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccc-----ccc------Ccccc---ccchhccccceEEEEEe-
Confidence            379999985   4678888889999998  7888864321     000      12222   23333224669888873 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 019519          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (340)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  141 (340)
                                     ..+.+.++.+++.+.++++++
T Consensus        65 ---------------p~~~~~~~l~~~~~~g~k~v~   85 (116)
T d1y81a1          65 ---------------PPKVGLQVAKEAVEAGFKKLW   85 (116)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCCEEE
T ss_pred             ---------------CHHHHHHHHHHHHhcCCceEE
Confidence                           234445555555666776544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=83.22  E-value=0.44  Score=39.66  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      ..|.|||| |..|...|..|+..+.  ++.|+|...
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            47999998 9999999999999987  899999876

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.91  E-value=0.39  Score=38.32  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~   63 (340)
                      ..+|+|||| |..|...|..+...+.  +++++|..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            369999998 9999999999998887  78888854

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=82.61  E-value=1.5  Score=34.39  Aligned_cols=72  Identities=21%  Similarity=0.204  Sum_probs=44.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCc-ccccc-----CCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQ-LGQAL-----EDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d-~~~al-----~~aDiVi  101 (340)
                      .+|+|+|+ |.+|...+..+...+. ..|+..|.++ ....+.++.-   ..-+. +...++ ..+..     .+.|+||
T Consensus        29 ~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa---~~~i~-~~~~d~~~~~~~~~~~~~G~d~vi  102 (174)
T d1p0fa2          29 STCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGA---TECLN-PKDYDKPIYEVICEKTNGGVDYAV  102 (174)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTC---SEEEC-GGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCC---cEEEc-CCCchhHHHHHHHHhcCCCCcEEE
Confidence            48999997 9999998887776663 5899999987 3444444431   11111 111111 11111     4799999


Q ss_pred             EcCCC
Q 019519          102 IPAGV  106 (340)
Q Consensus       102 ~~ag~  106 (340)
                      .+.|.
T Consensus       103 d~~g~  107 (174)
T d1p0fa2         103 ECAGR  107 (174)
T ss_dssp             ECSCC
T ss_pred             EcCCC
Confidence            98764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.17  E-value=0.58  Score=37.65  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=29.0

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .-|+|||| |..|.+.|..+.+.+.  +++|+|.++
T Consensus         3 yDvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           3 YDYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            35899998 9999999999998887  899999764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=82.10  E-value=0.5  Score=40.64  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=27.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHHh-----CCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKL-----NPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~-----~~~~~el~L~D~~~   64 (340)
                      .-|+|||| |-+|.++|..|++     .|+  +++++|..+
T Consensus         8 yDV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            36999998 9999999999964     566  899999753

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.01  E-value=0.78  Score=34.94  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLNP   52 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~~   52 (340)
                      ||+|+|++|.+|+.++..+...+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~   23 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAAD   23 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHST
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC
Confidence            89999988999999988776654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=81.91  E-value=0.72  Score=33.67  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCC
Q 019519           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN   64 (340)
Q Consensus        27 ~~~KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~   64 (340)
                      .+.||+|||| |.+|.-+|..+... ....+|.+++..+
T Consensus        17 ~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          17 APKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             cCCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            3569999998 99999998765532 2345899998754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.87  E-value=0.91  Score=35.58  Aligned_cols=94  Identities=13%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCCcHHHHHHHhcCCCCceEEEEecCCcccccc------CCCCEEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVVII  102 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aDiVi~  102 (340)
                      .+|.|+||+|.||...+..+...+.  +++..+.++.  ....+...... .+..+ ...|+.+.+      ++.|+|+-
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~~~~l~~~Ga~-~vi~~-~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--KREMLSRLGVE-YVGDS-RSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--HHHHHHTTCCS-EEEET-TCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEECCCCCcccccchhhccccc--cceeeecccc--ccccccccccc-ccccC-CccCHHHHHHHHhCCCCEEEEEe
Confidence            4899999889999999888777775  6666664431  11222332222 22222 223444444      57999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 019519          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (340)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  147 (340)
                      +.|-                +.+.+..   +-..|.+.++.++++
T Consensus       101 ~~g~----------------~~~~~~~---~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_         101 SLAG----------------EAIQRGV---QILAPGGRFIELGKK  126 (183)
T ss_dssp             CCCT----------------HHHHHHH---HTEEEEEEEEECSCG
T ss_pred             cccc----------------hHHHHHH---HHhcCCCEEEEEccC
Confidence            8751                1122222   223478999888644

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.34  E-value=0.59  Score=39.48  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=28.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhC-CCcceEEEEeCCC
Q 019519           30 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN   64 (340)
Q Consensus        30 KI~IiGaaG~VG~~~a~~l~~~-~~~~el~L~D~~~   64 (340)
                      -|+|||| |..|...|..|+.. |+  +++++|..+
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            5999998 99999999999864 77  999999764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.05  E-value=1.8  Score=34.60  Aligned_cols=72  Identities=22%  Similarity=0.252  Sum_probs=43.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcccccc------CCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aDiVi  101 (340)
                      ..|+|+|| |.+|...+..+...+ ...|+..|.++ ....+.++.   .  .........|+.+.+      .++|++|
T Consensus        27 ~tVlV~Ga-G~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~G---a--~~~~~~~~~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          27 STVYVAGA-GPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQG---F--EIADLSLDTPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT---C--EEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhcc---c--cEEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence            48999997 999987777666555 35899999876 223333332   1  121111122332222      4799999


Q ss_pred             EcCCCC
Q 019519          102 IPAGVP  107 (340)
Q Consensus       102 ~~ag~~  107 (340)
                      .+.|.+
T Consensus       100 d~vG~~  105 (195)
T d1kola2         100 DAVGFE  105 (195)
T ss_dssp             ECCCTT
T ss_pred             ECcccc
Confidence            988754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.00  E-value=0.61  Score=35.76  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeC
Q 019519           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (340)
Q Consensus        26 ~~~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~   62 (340)
                      .+.++|.|||| |.+|..-+..|+..|-  +|++++.
T Consensus        11 l~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            45679999998 9999999999998886  8999964

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.87  E-value=3  Score=32.61  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=57.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCcccc------ccCCCCEEE
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQ------ALEDSDVVI  101 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~------al~~aDiVi  101 (340)
                      ..|+|+|+ |-+|...+..+...+. .+|+.+|.++ ....+.++.-..   -+. +...++..+      .=.++|+||
T Consensus        31 ~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~---~in-~~~~~~~~~~~~~~~~g~G~d~vi  104 (176)
T d1d1ta2          31 STCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATE---CIS-PKDSTKPISEVLSEMTGNNVGYTF  104 (176)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSE---EEC-GGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred             CEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcE---EEC-ccccchHHHHHHHHhccccceEEE
Confidence            37999997 9999998888877763 5899999987 445555554211   111 111111111      125899999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCC
Q 019519          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPV  148 (340)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP~  148 (340)
                      ...|.+               ..+.   ..+....+ .+.+++++.|.
T Consensus       105 ~~~g~~---------------~~~~---~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         105 EVIGHL---------------ETMI---DALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             ECSCCH---------------HHHH---HHHTTSCTTTCEEEECSCCC
T ss_pred             EeCCch---------------HHHH---HHHHHhhcCCeEEEEEEccc
Confidence            987643               1111   12222333 58888888764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.68  E-value=0.69  Score=37.37  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      .=|+|||| |..|.+.|..+++.+.  +++|+|..+
T Consensus         6 yDviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           6 HDVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            46899998 9999999999999888  999999754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.29  E-value=1.1  Score=34.52  Aligned_cols=95  Identities=19%  Similarity=0.248  Sum_probs=56.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC-cHHHHHHHhcCCCCceEEEEecCCccccc----cCCCCEEEEc
Q 019519           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIP  103 (340)
Q Consensus        29 ~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a----l~~aDiVi~~  103 (340)
                      .+|.|+|+ |.+|...+..+...+.  +++.+|.++ ....+.++.   .. .+... ...|..+.    ..+.|.+|..
T Consensus        29 ~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~G---a~-~~i~~-~~~~~~~~~~~~~~g~~~~i~~  100 (166)
T d1llua2          29 QWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLG---AS-LTVNA-RQEDPVEAIQRDIGGAHGVLVT  100 (166)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT---CS-EEEET-TTSCHHHHHHHHHSSEEEEEEC
T ss_pred             CEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccC---cc-ccccc-cchhHHHHHHHhhcCCcccccc
Confidence            48999997 9999998888888775  899999876 233344433   11 12111 12233232    2456666665


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 019519          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (340)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP~d  149 (340)
                      .+.+               +.+.   ..++-..|.+.+++++.|.+
T Consensus       101 ~~~~---------------~~~~---~~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2         101 AVSN---------------SAFG---QAIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             CSCH---------------HHHH---HHHTTEEEEEEEEECCCCSS
T ss_pred             cccc---------------hHHH---HHHHHhcCCcEEEEEEecCC
Confidence            5322               1111   23343458899998877654

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.24  E-value=2.1  Score=32.75  Aligned_cols=70  Identities=17%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             CCeEEEEcCC--CChHHHHHHHHHhCCCcceEEEEeCCC---cHHHHHHHhcCCCCceEEEEecCCccccccCCCCEEEE
Q 019519           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (340)
Q Consensus        28 ~~KI~IiGaa--G~VG~~~a~~l~~~~~~~el~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVi~  102 (340)
                      ..||+++|=.  +.|..+++..+...|.  ++.++-...   .......+....  ..+..+   .|++++++++|+|..
T Consensus         4 gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~~--~~~~~~---~d~~~av~~aDvvy~   76 (157)
T d1ml4a2           4 GLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELREKG--MKVVET---TTLEDVIGKLDVLYV   76 (157)
T ss_dssp             SEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHHTT--CCEEEE---SCTHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHhhc--ccceee---cCHHHhhccCcEEEe
Confidence            4699999962  4677888877776665  888887644   222222233222  244443   577899999999888


Q ss_pred             cC
Q 019519          103 PA  104 (340)
Q Consensus       103 ~a  104 (340)
                      +.
T Consensus        77 ~~   78 (157)
T d1ml4a2          77 TR   78 (157)
T ss_dssp             CC
T ss_pred             ec
Confidence            63

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.09  E-value=0.67  Score=36.01  Aligned_cols=37  Identities=30%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHHhCCCcceEEEEeCCC
Q 019519           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (340)
Q Consensus        28 ~~KI~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~   64 (340)
                      |.||+|+|++|++|.+...-+-..+---+|+.+-.+.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            5799999999999999877666554222666665444