Citrus Sinensis ID: 019580

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MSFRFHVAHSTPLGKIRSSSTHQQHHKHILAKRCGSTSSNSVSVKSRAGELDSVIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSASL
ccEEEEEcccccccccccccccccccccEEcccccccccccccccccccccccHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEccccccccccccccHHHHccccccHHHHHHHHHHHHcccEEEEccccccccccccEEEEEEEEcccccEEEEcccccccccccccccEEEEccccccccccEEEcccccEEEEEEEcccccHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccccccccEEEEcccccHHHccccccccEEEEEEccHHHHHHHHHHcccccccccccccccccc
ccEEEEEccccccccccccccccccccEEEEEEccccccccEEEccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHcccccHHHHHHHHHHHHccEEEEEccccccccccccEEEEEEEEcccccEEEEEEEEEEEEEEccccEEEEccccccccccccEEcccccEEEEEEEEcccHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHccEEEEEEccccccccccEEEccEEEEccccEEEEEcccccccEEEEEEccHHHHHHHHHHccHHHccccccHcEEccc
msfrfhvahstplgkirsssthqqHHKHILakrcgstssnsvsvksragelDSVIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKllclpenfsyvgdkdgdslkvaetldgpimqgyCSLARESRVWLSlggfqekgsddahlcnthvlvddagnirstYRKMhlfdvdipggrsykessfteagkdivavdspvgrlgptvcydlrfpELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQagkhndkresygdsliidpwgtvigrlpdrlstgiavadidFSLIDSVRakmpiakhrksidfwksasl
msfrfhvahstplgkirsssthQQHHKHIlakrcgstssnSVSVKSRAGELDSVIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKdivavdspvgrlGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAqagkhndkresyGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAkmpiakhrksidfwksasl
MSFRFHVAHSTPLGKIRSSSTHQQHHKHILAKRCGstssnsvsvksRAGELDSVIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSASL
*****************************************************VIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFW*****
*SFR***AHS*****************HILAK*****************************VRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD*********GPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSASL
***********PLGK******************************SRAGELDSVIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQ**********YGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSASL
*SFRFHVAHSTPL*KIR******QHHKHILAKRCGSTSSNSVSVK*RAGELDSVIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSAS*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFRFHVAHSTPLGKIRSSSTHQQHHKHILAKRCGSTSSNSVSVKSRAGELDSVIMAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSASL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
Q557J5291 Nitrilase homolog 1 OS=Di yes no 0.781 0.910 0.503 1e-71
O76463 440 Nitrilase and fragile his yes no 0.778 0.6 0.468 4e-69
Q32LH4328 Nitrilase homolog 1 OS=Bo yes no 0.799 0.826 0.453 3e-68
Q8VDK1323 Nitrilase homolog 1 OS=Mu yes no 0.775 0.814 0.462 4e-68
Q86X76327 Nitrilase homolog 1 OS=Ho yes no 0.846 0.877 0.437 6e-68
Q7TQ94292 Nitrilase homolog 1 OS=Ra yes no 0.802 0.931 0.453 1e-66
O76464 460 Nitrilase and fragile his yes no 0.784 0.578 0.429 5e-58
O94660276 Probable hydrolase nit2 O yes no 0.761 0.934 0.402 7e-49
P55175272 UPF0012 hydrolase sll0601 N/A no 0.764 0.952 0.399 6e-48
P47016307 Probable hydrolase NIT2 O yes no 0.784 0.866 0.367 7e-45
>sp|Q557J5|NIT1_DICDI Nitrilase homolog 1 OS=Dictyostelium discoideum GN=nit1-1 PE=3 SV=1 Back     alignment and function desciption
 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/274 (50%), Positives = 180/274 (65%), Gaps = 9/274 (3%)

Query: 63  RVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYV--GDKDGDSLKVAETL 120
           R+ + Q+TS N+   NF     ++++A      L CLPE F+++  G    +S   AE L
Sbjct: 14  RIGLGQITSTNNKEDNFRKCKEMIEKAVENKVNLFCLPECFAFISGGIHQFESRDNAEYL 73

Query: 121 D--GPIMQGYCSLARESRVWLSLGGFQEKGSDDAH--LCNTHVLVDDAGNIRSTYRKMHL 176
           D  G I++ Y  LA+++ +WLSLGGF EK  DD +  + NTH+++D  G I   YRKMHL
Sbjct: 74  DQKGGIIERYKDLAKQNNIWLSLGGFHEKILDDPNDMIYNTHLIIDSNGVIVCEYRKMHL 133

Query: 177 FDVDIPG-GRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVL 235
           FDVDIP  G    ES   + G D+V  DSPVG+LG ++CYDLRFPELY  LR + +AQ+L
Sbjct: 134 FDVDIPSKGVKMNESKVVKGGNDLVVCDSPVGKLGLSICYDLRFPELYLSLR-RMDAQIL 192

Query: 236 LVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIG 295
           LVPSAF K TG+AHW+ LL+ARAIE Q YVIAAAQ G H+ KR SYG S+IIDPWG V+ 
Sbjct: 193 LVPSAFMKSTGEAHWKPLLQARAIENQTYVIAAAQTGDHHSKRSSYGHSMIIDPWGKVLH 252

Query: 296 RLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRK 329
            LPD L+  IA  DID   I + R  +P+  H+K
Sbjct: 253 DLPDNLND-IAFVDIDLDYISTCRENIPVFNHKK 285

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 5EC: .EC: -EC: .EC: -
>sp|O76463|NFT1_CAEEL Nitrilase and fragile histidine triad fusion protein NitFhit OS=Caenorhabditis elegans GN=nft-1 PE=1 SV=1 Back     alignment and function description
>sp|Q32LH4|NIT1_BOVIN Nitrilase homolog 1 OS=Bos taurus GN=NIT1 PE=2 SV=1 Back     alignment and function description
>sp|Q8VDK1|NIT1_MOUSE Nitrilase homolog 1 OS=Mus musculus GN=Nit1 PE=2 SV=2 Back     alignment and function description
>sp|Q86X76|NIT1_HUMAN Nitrilase homolog 1 OS=Homo sapiens GN=NIT1 PE=1 SV=2 Back     alignment and function description
>sp|Q7TQ94|NIT1_RAT Nitrilase homolog 1 OS=Rattus norvegicus GN=Nit1 PE=2 SV=1 Back     alignment and function description
>sp|O76464|NFT1_DROME Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1 Back     alignment and function description
>sp|O94660|NIT2_SCHPO Probable hydrolase nit2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nit2 PE=3 SV=1 Back     alignment and function description
>sp|P55175|Y601_SYNY3 UPF0012 hydrolase sll0601 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0601 PE=3 SV=1 Back     alignment and function description
>sp|P47016|NIT2_YEAST Probable hydrolase NIT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NIT2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
359486314282 PREDICTED: nitrilase homolog 1-like [Vit 0.828 0.996 0.850 1e-143
255568181333 nitrilase and fragile histidine triad fu 0.834 0.849 0.809 1e-136
224112919293 predicted protein [Populus trichocarpa] 0.843 0.976 0.804 1e-136
363807860283 uncharacterized protein LOC100781131 [Gl 0.828 0.992 0.818 1e-135
357445021283 Nitrilase-like protein [Medicago truncat 0.825 0.989 0.814 1e-135
388500566317 unknown [Lotus japonicus] 0.890 0.952 0.778 1e-135
224098154271 predicted protein [Populus trichocarpa] 0.790 0.988 0.832 1e-132
297813341307 hypothetical protein ARALYDRAFT_911156 [ 0.802 0.885 0.798 1e-131
18413157307 Nitrilase/cyanide hydratase and apolipop 0.802 0.885 0.798 1e-131
449451693327 PREDICTED: nitrilase homolog 1-like [Cuc 0.823 0.853 0.770 1e-130
>gi|359486314|ref|XP_002275667.2| PREDICTED: nitrilase homolog 1-like [Vitis vinifera] gi|297736451|emb|CBI25322.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/281 (85%), Positives = 260/281 (92%)

Query: 59  ASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAE 118
           A+SVRVA  QMTS+NDLAANFAT SRLVKEA SAGAK +C PENFS+V  KDG+SL +AE
Sbjct: 2   ANSVRVAAVQMTSVNDLAANFATCSRLVKEAVSAGAKFICFPENFSFVATKDGESLTIAE 61

Query: 119 TLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFD 178
            LDGPIMQGY SLARES++WLSLGGFQEKG DDAHLCNTHVL+DD GNIRS YRK+HLFD
Sbjct: 62  PLDGPIMQGYRSLARESKIWLSLGGFQEKGQDDAHLCNTHVLIDDTGNIRSKYRKIHLFD 121

Query: 179 VDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVP 238
           VD+PGG  YKESSFTE GK++VAVDSP+GRLG TVCYDLRFPELYQQLRF H+AQVLLVP
Sbjct: 122 VDVPGGAVYKESSFTEGGKEVVAVDSPIGRLGVTVCYDLRFPELYQQLRFLHDAQVLLVP 181

Query: 239 SAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLP 298
           +AFTKVTGQAHWE+LLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGT+IGRLP
Sbjct: 182 AAFTKVTGQAHWELLLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTIIGRLP 241

Query: 299 DRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSASL 339
           DRLSTGIAVADIDFSLIDSVRAKMPI++HRK  +FWKSASL
Sbjct: 242 DRLSTGIAVADIDFSLIDSVRAKMPISQHRKPPEFWKSASL 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568181|ref|XP_002525066.1| nitrilase and fragile histidine triad fusion protein, putative [Ricinus communis] gi|223535647|gb|EEF37313.1| nitrilase and fragile histidine triad fusion protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224112919|ref|XP_002316330.1| predicted protein [Populus trichocarpa] gi|222865370|gb|EEF02501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807860|ref|NP_001242187.1| uncharacterized protein LOC100781131 [Glycine max] gi|255647154|gb|ACU24045.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357445021|ref|XP_003592788.1| Nitrilase-like protein [Medicago truncatula] gi|355481836|gb|AES63039.1| Nitrilase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388500566|gb|AFK38349.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224098154|ref|XP_002311127.1| predicted protein [Populus trichocarpa] gi|222850947|gb|EEE88494.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297813341|ref|XP_002874554.1| hypothetical protein ARALYDRAFT_911156 [Arabidopsis lyrata subsp. lyrata] gi|297320391|gb|EFH50813.1| hypothetical protein ARALYDRAFT_911156 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18413157|ref|NP_567340.1| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Arabidopsis thaliana] gi|13926307|gb|AAK49620.1|AF372904_1 AT4g08790/T32A17_100 [Arabidopsis thaliana] gi|22137058|gb|AAM91374.1| At4g08790/T32A17_100 [Arabidopsis thaliana] gi|332657278|gb|AEE82678.1| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449451693|ref|XP_004143596.1| PREDICTED: nitrilase homolog 1-like [Cucumis sativus] gi|449509003|ref|XP_004163466.1| PREDICTED: nitrilase homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
TAIR|locus:2138208307 AT4G08790 "AT4G08790" [Arabido 0.799 0.882 0.801 6.9e-118
ZFIN|ZDB-GENE-040912-65316 nit1 "nitrilase 1" [Danio reri 0.814 0.873 0.485 6.5e-67
DICTYBASE|DDB_G0273519291 nit1-2 "nitrilase 1" [Dictyost 0.781 0.910 0.503 3.2e-65
DICTYBASE|DDB_G0273457291 nit1-1 "nitrilase 1" [Dictyost 0.781 0.910 0.503 3.2e-65
WB|WBGene00003594 440 nft-1 [Caenorhabditis elegans 0.778 0.6 0.468 9.7e-64
UNIPROTKB|O76463 440 nft-1 "Nitrilase and fragile h 0.778 0.6 0.468 9.7e-64
UNIPROTKB|F1PLS8549 NIT1 "Uncharacterized protein" 0.775 0.479 0.474 3.3e-63
UNIPROTKB|F1N1W5328 NIT1 "Nitrilase homolog 1" [Bo 0.799 0.826 0.453 5.4e-63
UNIPROTKB|Q32LH4328 NIT1 "Nitrilase homolog 1" [Bo 0.799 0.826 0.453 5.4e-63
UNIPROTKB|F1S193312 NIT1 "Uncharacterized protein" 0.775 0.842 0.474 6.9e-63
TAIR|locus:2138208 AT4G08790 "AT4G08790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 218/272 (80%), Positives = 246/272 (90%)

Query:    61 SVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETL 120
             +VRVA AQMTS+NDL  NFAT SRLV+EAA AGAKL+C PENFS+VGDK+G+S+K+AE L
Sbjct:    36 TVRVAAAQMTSVNDLMTNFATCSRLVQEAALAGAKLICFPENFSFVGDKEGESVKIAEPL 95

Query:   121 DGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVD 180
             DGP+M+ YCSLAR+S +WLSLGGFQE+  DD HLCNTHV++DDAG IR TY+KMHLFDVD
Sbjct:    96 DGPVMERYCSLARDSNIWLSLGGFQER-FDDTHLCNTHVVIDDAGMIRDTYQKMHLFDVD 154

Query:   181 IPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSA 240
             +PGG SYKESSFT  G  IV+VDSPVGRLG TVCYDLRFP++YQQLRF+ +AQVLLVPSA
Sbjct:   155 VPGGSSYKESSFTVPGTKIVSVDSPVGRLGLTVCYDLRFPKIYQQLRFEQKAQVLLVPSA 214

Query:   241 FTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDR 300
             FTKVTG+AHWEILLRARAIETQCYVIAAAQAGKHN+KRESYGD+LIIDPWGTV+GRLPDR
Sbjct:   215 FTKVTGEAHWEILLRARAIETQCYVIAAAQAGKHNEKRESYGDTLIIDPWGTVVGRLPDR 274

Query:   301 LSTGIAVADIDFSLIDSVRAKMPIAKHRKSID 332
             +STGI VADIDFSLIDSVR KMPI K R SID
Sbjct:   275 VSTGIVVADIDFSLIDSVRTKMPIDKQRVSID 306
GO:0000257 "nitrilase activity" evidence=ISS
GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0009536 "plastid" evidence=IDA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
ZFIN|ZDB-GENE-040912-65 nit1 "nitrilase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273519 nit1-2 "nitrilase 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273457 nit1-1 "nitrilase 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00003594 nft-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O76463 nft-1 "Nitrilase and fragile histidine triad fusion protein NitFhit" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLS8 NIT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1W5 NIT1 "Nitrilase homolog 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LH4 NIT1 "Nitrilase homolog 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S193 NIT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q557J5NIT1_DICDI3, ., 5, ., -, ., -0.50360.78170.9106yesno
Q86X76NIT1_HUMAN3, ., 5, ., -, ., -0.43750.84660.8776yesno
Q7TQ94NIT1_RAT3, ., 5, ., -, ., -0.45350.80230.9315yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029495001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (282 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017570001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (371 aa)
••    • 0.575

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
PLN02798286 PLN02798, PLN02798, nitrilase 0.0
cd07572265 cd07572, nit, Nit1, Nit 2, and related proteins, a 1e-150
cd07581255 cd07581, nitrilase_3, Uncharacterized subgroup of 3e-76
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 6e-71
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 1e-70
cd07583253 cd07583, nitrilase_5, Uncharacterized subgroup of 7e-70
cd07584258 cd07584, nitrilase_6, Uncharacterized subgroup of 2e-44
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 1e-41
cd07580268 cd07580, nitrilase_2, Uncharacterized subgroup of 1e-35
cd07576254 cd07576, R-amidase_like, Pseudomonas sp 2e-35
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 1e-34
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 9e-33
TIGR03381279 TIGR03381, agmatine_aguB, N-carbamoylputrescine am 4e-32
cd07564297 cd07564, nitrilases_CHs, Nitrilases, cyanide hydra 9e-28
PLN02747296 PLN02747, PLN02747, N-carbamolyputrescine amidase 3e-25
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 8e-24
cd07574280 cd07574, nitrilase_Rim1_like, Uncharacterized subg 8e-23
cd07577259 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 2e-21
cd07575252 cd07575, Xc-1258_like, Xanthomonas campestris XC12 3e-21
cd07579279 cd07579, nitrilase_1_R2, Second nitrilase domain o 3e-21
cd07569302 cd07569, DCase, N-carbamyl-D-amino acid amidohydro 5e-21
cd07582294 cd07582, nitrilase_4, Uncharacterized subgroup of 1e-19
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 2e-19
cd07571270 cd07571, ALP_N-acyl_transferase, Apolipoprotein N- 4e-18
cd07578258 cd07578, nitrilase_1_R1, First nitrilase domain of 2e-17
PRK10438256 PRK10438, PRK10438, C-N hydrolase family amidase; 7e-15
PLN02504346 PLN02504, PLN02504, nitrilase 2e-13
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 2e-13
cd07565291 cd07565, aliphatic_amidase, aliphatic amidases (cl 4e-13
TIGR04048301 TIGR04048, nitrile_sll0784, putative nitrilase, sl 1e-12
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 8e-12
TIGR00546391 TIGR00546, lnt, apolipoprotein N-acyltransferase 4e-10
COG0815518 COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce 2e-09
PRK00302505 PRK00302, lnt, apolipoprotein N-acyltransferase; R 1e-08
PRK13287333 PRK13287, amiF, formamidase; Provisional 4e-07
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 7e-07
cd07587363 cd07587, ML_beta-AS, mammalian-like beta-alanine s 3e-06
cd07566295 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-t 5e-05
PRK13286345 PRK13286, amiE, acylamide amidohydrolase; Provisio 0.001
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase Back     alignment and domain information 
 Score =  557 bits (1438), Expect = 0.0
 Identities = 226/281 (80%), Positives = 250/281 (88%)

Query: 57  AGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKV 116
              SSVRVAVAQMTS NDLAANFAT SRL KEAA+AGAKLL LPE FS++GDKDG+SL +
Sbjct: 6   TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAI 65

Query: 117 AETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHL 176
           AE LDGPIMQ Y SLARES +WLSLGGFQEKG DD+HL NTHVL+DD+G IRS+YRK+HL
Sbjct: 66  AEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHL 125

Query: 177 FDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLL 236
           FDVD+PGG   KESSFT  GK IVAVDSPVGRLG TVCYDLRFPELYQQLRF+H AQVLL
Sbjct: 126 FDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGLTVCYDLRFPELYQQLRFEHGAQVLL 185

Query: 237 VPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGR 296
           VPSAFTK TG+AHWE+LLRARAIETQCYVIAAAQAGKHN+KRESYG +LIIDPWGTV+ R
Sbjct: 186 VPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGTVVAR 245

Query: 297 LPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSA 337
           LPDRLSTGIAVADID SL+DSVR KMPIA+HR+S++FW + 
Sbjct: 246 LPDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEFWSAT 286

Length = 286
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase Back     alignment and domain information
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143599 cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional Back     alignment and domain information
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase Back     alignment and domain information
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|183950 PRK13287, amiF, formamidase; Provisional Back     alignment and domain information
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>gnl|CDD|237335 PRK13286, amiE, acylamide amidohydrolase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
PLN02798286 nitrilase 100.0
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
PLN00202405 beta-ureidopropionase 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
PLN02504346 nitrilase 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
PRK13287333 amiF formamidase; Provisional 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
KOG0806298 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 100.0
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 100.0
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 100.0
KOG0805337 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
KOG0808387 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 99.98
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.97
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.97
PRK13825388 conjugal transfer protein TraB; Provisional 99.92
KOG2303 706 consensus Predicted NAD synthase, contains CN hydr 99.8
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 87.78
PLN02798 286 nitrilase 85.39
cd07581 255 nitrilase_3 Uncharacterized subgroup of the nitril 83.45
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 83.37
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 82.28
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 81.2
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 80.97
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 80.77
PRK13286345 amiE acylamide amidohydrolase; Provisional 80.17
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 80.07
>PLN02798 nitrilase Back     alignment and domain information 
Probab=100.00  E-value=1.8e-53  Score=392.80  Aligned_cols=275  Identities=82%  Similarity=1.272  Sum_probs=247.6

Q ss_pred             cccEEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEE
Q 019580           60 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWL  139 (339)
Q Consensus        60 ~~~rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~i  139 (339)
                      ++||||++|+++.+|.+.|++++++++++|.++|+|||||||++.++|+...+....++...++.++.++++|++++++|
T Consensus         9 ~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~i   88 (286)
T PLN02798          9 SSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWL   88 (286)
T ss_pred             CccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEE
Confidence            57999999999889999999999999999999999999999986567877666556666777889999999999999999


Q ss_pred             EEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcc
Q 019580          140 SLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRF  219 (339)
Q Consensus       140 v~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~  219 (339)
                      ++|++.++..+++++||++++|+|+|++++.|+|+|||++++|.+..+.|..+|++|+.+.+|+++++|||++||||.+|
T Consensus        89 v~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~k~g~~IC~D~~f  168 (286)
T PLN02798         89 SLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGLTVCYDLRF  168 (286)
T ss_pred             EEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCeeeEEecCCceEEEEEEEcccC
Confidence            99977665324678999999999999999999999999999998777778899999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCC
Q 019580          220 PELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPD  299 (339)
Q Consensus       220 pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~  299 (339)
                      |+++|.++.++|+|+|++|++|+...+..+|..+++.||+||++||+.+|++|.+.++..++|+|+|++|+|+++++++.
T Consensus       169 pe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~il~~~~~  248 (286)
T PLN02798        169 PELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGTVVARLPD  248 (286)
T ss_pred             hHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECCCccchhhcCC
Confidence            99999986358999999999988766667888889999999999999999999876667889999999999999999875


Q ss_pred             CCCceEEEEEeehhHHHHHHhcCCcccCCCCcccc
Q 019580          300 RLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFW  334 (339)
Q Consensus       300 ~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~  334 (339)
                      ..++++++++||++.++..|..+++++|+++++++
T Consensus       249 ~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~~  283 (286)
T PLN02798        249 RLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEFW  283 (286)
T ss_pred             CCCCCEEEEEecHHHHHHHHHhCcchhccchhhhh
Confidence            33589999999999999999999999999999886

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
1ems_A 440 Crystal Structure Of The C. Elegans Nitfhit Protein 5e-70
2w1v_A276 Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso 2e-39
1f89_A291 Crystal Structure Of Saccharomyces Cerevisiae Nit3, 1e-34
1j31_A262 Crystal Structure Of Hypothetical Protein Ph0642 Fr 3e-15
3ivz_A262 Crystal Structure Of Hyperthermophilic Nitrilase Le 7e-14
3p8k_A281 Crystal Structure Of A Putative Carbon-Nitrogen Fam 2e-13
2e11_A266 The Crystal Structure Of Xc1258 From Xanthomonas Ca 1e-11
3hkx_A283 Crystal Structure Analysis Of An Amidase From Neste 8e-07
1erz_A303 Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh 5e-06
1fo6_A304 Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A 2e-05
2ggl_A304 The Mutant A222c Of Agrobacterium Radiobacter N-Car 2e-05
2ggk_A304 The Mutant A302c Of Agrobacterium Radiobacter N-Car 2e-05
1uf4_A303 Crystal Structure Of C171aV236A MUTANT OF N-Carbamy 2e-05
2dyu_A334 Helicobacter Pylori Formamidase Amif Contains A Fin 4e-04
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure 
Iteration: 1

 Score =  261 bits (666), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/269 (46%), Positives = 177/269 (65%), Gaps = 5/269 (1%)
Query: 64  VAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGP 123
           +AV QMTS NDL  NF  +  +++ A     +++ LPE F ++G    + + +A   D  
Sbjct: 17  IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCE 76
Query: 124 IMQGYCSLARESRVWLSLGGFQEKG-SDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIP 182
            M+ Y  LAR+  +WLSLGG   K  SD AH  NTH+++D  G  R+ Y K+HLFD++IP
Sbjct: 77  YMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIP 136
Query: 183 GGRSYKESSFTEAGKDIVA-VDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAF 241
           G     ES F++AG +++  VD+P+GRLG ++CYD+RFPEL    R +  AQ+L  PSAF
Sbjct: 137 GKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNR-KRGAQLLSFPSAF 195
Query: 242 TKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRL 301
           T  TG AHWE LLRARAIE QCYV+AAAQ G HN KR+SYG S+++DPWG V+ +  +R+
Sbjct: 196 TLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCSERV 255
Query: 302 STGIAVADIDFSLIDSVRAKMPIAKHRKS 330
              +  A+ID S +D++R   P+  HR+S
Sbjct: 256 D--MCFAEIDLSYVDTLREMQPVFSHRRS 282
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276 Back     alignment and structure
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291 Back     alignment and structure
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262 Back     alignment and structure
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262 Back     alignment and structure
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family Hydrolase From Staphylococcus Aureus Length = 281 Back     alignment and structure
>pdb|2E11|A Chain A, The Crystal Structure Of Xc1258 From Xanthomonas Campestris: A Cn- Hydrolase Superfamily Protein With An Arsenic Adduct In The Active Site Length = 266 Back     alignment and structure
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From Nesterenkonia Sp Length = 283 Back     alignment and structure
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303 Back     alignment and structure
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303 Back     alignment and structure
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned Cysteine- Glutamate-lysine Catalytic Triad Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 1e-145
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 1e-142
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 1e-135
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 1e-100
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 4e-94
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 5e-94
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1e-77
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 6e-75
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 3e-71
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 3e-70
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 5e-67
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 2e-16
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 9e-15
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 2e-13
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 1e-10
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
 Score =  416 bits (1071), Expect = e-145
 Identities = 124/273 (45%), Positives = 174/273 (63%), Gaps = 5/273 (1%)

Query: 59  ASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAE 118
                +AV QMTS NDL  NF  +  +++ A     +++ LPE F ++G    + + +A 
Sbjct: 12  TGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAM 71

Query: 119 TLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDA-HLCNTHVLVDDAGNIRSTYRKMHLF 177
             D   M+ Y  LAR+  +WLSLGG   K   DA H  NTH+++D  G  R+ Y K+HLF
Sbjct: 72  ATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLF 131

Query: 178 DVDIPGGRSYKESSFTEAGKDIVA-VDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLL 236
           D++IPG     ES F++AG +++  VD+P+GRLG ++CYD+RFPEL    R +  AQ+L 
Sbjct: 132 DLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNR-KRGAQLLS 190

Query: 237 VPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGR 296
            PSAFT  TG AHWE LLRARAIE QCYV+AAAQ G HN KR+SYG S+++DPWG V+ +
Sbjct: 191 FPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQ 250

Query: 297 LPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRK 329
             +R    +  A+ID S +D++R   P+  HR+
Sbjct: 251 CSER--VDMCFAEIDLSYVDTLREMQPVFSHRR 281
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276 Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 82.42
3hkx_A 283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 81.79
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1.5e-56  Score=410.07  Aligned_cols=271  Identities=34%  Similarity=0.570  Sum_probs=250.3

Q ss_pred             cccEEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEE
Q 019580           60 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWL  139 (339)
Q Consensus        60 ~~~rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~i  139 (339)
                      ++||||++|+++.+|++.|++++.+++++|.++|+|||||||++ ++||...+....++.++++.++.|+++|++++++|
T Consensus         2 ~~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~-~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i   80 (276)
T 2w1v_A            2 STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECF-NSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYL   80 (276)
T ss_dssp             CEEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTTT-TSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEE
T ss_pred             CccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCc-ccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEE
Confidence            46999999999889999999999999999999999999999997 58888777767777777899999999999999999


Q ss_pred             EEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcc
Q 019580          140 SLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRF  219 (339)
Q Consensus       140 v~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~  219 (339)
                      ++|++.++  +++++||++++++|+|++++.|+|+|||+.++|+++.+.|..+|++|+++.+|+++++|+|++||||++|
T Consensus        81 v~G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~~v~~~~~~~ig~~ICyD~~f  158 (276)
T 2w1v_A           81 IGGSIPEE--DAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRF  158 (276)
T ss_dssp             ECCCEEEE--ETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCCCEEECSSCEEEECCGGGGGC
T ss_pred             Eecceeec--CCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCceeEEeCCceEEEEEEecccc
Confidence            99977765  3568999999999999999999999999887899988899999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCC
Q 019580          220 PELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPD  299 (339)
Q Consensus       220 pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~  299 (339)
                      |+++|.++ ++|+|+|++|++|+...+..+|..+++.||+||++||+++|++|.++++..+.|.|+|++|+|+++++++.
T Consensus       159 pe~~r~~~-~~ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G~v~~~~~~  237 (276)
T 2w1v_A          159 AELAQIYA-QRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAGT  237 (276)
T ss_dssp             HHHHHHHH-HTTEEEEEEECCCCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTSSSCCCCCCEEECTTSCEEEECCS
T ss_pred             HHHHHHHH-HcCCCEEEECCcCCCcCCHHHHHHHHHHHHHHcCcEEEEecccccCCCCceeeeEeEEECCCCCEeEEcCC
Confidence            99999999 89999999999988765567899999999999999999999999887778999999999999999999875


Q ss_pred             CCCceEEEEEeehhHHHHHHhcCCcccCCCCcccccc
Q 019580          300 RLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKS  336 (339)
Q Consensus       300 ~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~  336 (339)
                        ++++++++||++.++..|..+|+++|||+++|...
T Consensus       238 --~e~~l~~~id~~~~~~~R~~~~~~~~~r~~~y~~~  272 (276)
T 2w1v_A          238 --EETILYSDIDLKKLAEIRQQIPILKQKRADLYTVE  272 (276)
T ss_dssp             --SSEEEEEEEEHHHHHHHHHHSCGGGSCCTTTEEEE
T ss_pred             --CCeEEEEEEcHHHHHHHHHhCChhHhCCHHHhhcc
Confidence              69999999999999999999999999999999643
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 339
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 5e-55
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 5e-38
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 3e-36
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 6e-34
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  179 bits (453), Expect = 5e-55
 Identities = 124/275 (45%), Positives = 172/275 (62%), Gaps = 6/275 (2%)

Query: 56  MAGASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLK 115
           MA      +AV QMTS NDL  NF  +  +++ A     +++ LPE F ++G    + + 
Sbjct: 1   MA-TGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQID 59

Query: 116 VAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSD-DAHLCNTHVLVDDAGNIRSTYRKM 174
           +A   D   M+ Y  LAR+  +WLSLGG   K     AH  NTH+++D  G  R+ Y K+
Sbjct: 60  LAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKL 119

Query: 175 HLFDVDIPGGRSYKESSFTEAGKDI-VAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQ 233
           HLFD++IPG     ES F++AG ++   VD+P+GRLG ++CYD+RFPEL    R +   Q
Sbjct: 120 HLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGA-Q 178

Query: 234 VLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTV 293
           +L  PSAFT  TG AHWE LLRARAIE QCYV+AAAQ G HN KR+SYG S+++DPWG V
Sbjct: 179 LLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAV 238

Query: 294 IGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHR 328
           + +  +R    +  A+ID S +D++R   P+  HR
Sbjct: 239 VAQCSER--VDMCFAEIDLSYVDTLREMQPVFSHR 271
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1f89a_ 281 hypothetical protein yl85 {Baker's yeast (Saccharo 81.14
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-50  Score=369.44  Aligned_cols=268  Identities=31%  Similarity=0.549  Sum_probs=231.9

Q ss_pred             cCcccEEEEEEecC-cCCHHHHHHHHHHHHHHHHHC--CCeEEEeCCCCCCCCCCCcchhhhh----ccCCchHHHHHHH
Q 019580           58 GASSVRVAVAQMTS-INDLAANFATSSRLVKEAASA--GAKLLCLPENFSYVGDKDGDSLKVA----ETLDGPIMQGYCS  130 (339)
Q Consensus        58 ~~~~~rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~--gadlIVfPE~~~~~g~~~~~~~~~a----~~~~~~~~~~l~~  130 (339)
                      |+++||||++|+++ .+|.+.|++++++++++|.++  |+|||||||++ ++||...+.....    +..+++.++.+++
T Consensus         6 m~~~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~-l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (281)
T d1f89a_           6 LSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECF-NSPYSTDQFRKYSEVINPKEPSTSVQFLSN   84 (281)
T ss_dssp             BSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTT-TSCSCHHHHHHHTTBCCSSSCCHHHHHHHH
T ss_pred             hccCceEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCcc-cCCCchhHHHHHHhhhcccCCCHHHHHHHH
Confidence            45789999999996 589999999999999999654  89999999997 6898876543332    3356789999999


Q ss_pred             HHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceE
Q 019580          131 LARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLG  210 (339)
Q Consensus       131 ~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kig  210 (339)
                      +|++++++|++|++.+...+++++||++++++|+|+++..|+|+++++...+....+.|..++.+|....+++++++|+|
T Consensus        85 ~A~~~~i~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~g  164 (281)
T d1f89a_          85 LANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFG  164 (281)
T ss_dssp             HHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCCEEEEETTEEEE
T ss_pred             HhhhcCceeecceeeeeccccCceeeecccccccccccccccccccccccccccccccccceeeeecccccccccccccc
Confidence            99999999999977766546789999999999999999999999997665555556678888999999999999999999


Q ss_pred             EEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCC
Q 019580          211 PTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPW  290 (339)
Q Consensus       211 v~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~  290 (339)
                      ++||+|.++|+.++.++ .+|++++++|++++......+|...++.||.||++||+++|++|...++..++|+|+|++|+
T Consensus       165 ~~iC~d~~~p~~~r~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~  243 (281)
T d1f89a_         165 VGICYDMRFPELAMLSA-RKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPR  243 (281)
T ss_dssp             ECCGGGGGCHHHHHHHH-HTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEECTT
T ss_pred             cccccccccccchhhhh-cccccceeEeeccccccccccccchhhhhcccccccceeeeecccCCCCcEeeeceEEEcCC
Confidence            99999999999999999 89999999999887765566788889999999999999999999888888999999999999


Q ss_pred             CCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCC
Q 019580          291 GTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRK  329 (339)
Q Consensus       291 G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~  329 (339)
                      |+++++++.  +++++++|||++.++..|+++|+++|||
T Consensus       244 G~vl~~~~~--~e~v~~adidl~~~~~~R~~~~~~~~rr  280 (281)
T d1f89a_         244 GKIVAEAGE--GEEIIYAELDPEVIESFRQAVPLTKQRR  280 (281)
T ss_dssp             SCEEEECCS--SSEEEEEEECHHHHHHHHHHSCCCCCCC
T ss_pred             CCEEEECCC--CCeEEEEEEcHHHHHHHHHhCchhhhCC
Confidence            999999876  4799999999999999999999999987
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure