Citrus Sinensis ID: 019584

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPHSESVFTFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFRLQPKADARTRRVRGHRQRM
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccEEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccHHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEccccccccccccccHccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccHHHHHHcccccccccHHHHcccHHHHHEEEEHHHHccccHHHHHHHHcHccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
MGLSLTFFTFRHLVLFSFLIFHLAIAHFisstqplchdrERSALLNFKESLVINQTassysstypkvatwkpdeknkdccswdgvkcnedtghVVELDLAssclygsinstSSLFQLVHLQrlslfdnnfnfseipsaILNFSRLTHlnlsqsyfsgqipaellelsnlevldlsysnfDTFYLKLQKPGLANLAENLTNLKALDLINVHISstvphtlanlsslrfsslsgcrlqgefpqeifqlpnlqflglcggplskkcnnseasppeedphsesvftfgWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFRlqpkadartrrvrghrqrm
Flexible Loop (DISEMBL)
MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVinqtassysstypkvatwkpdekNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPHSESVFTFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKtfrlqpkadartrrvrghrqrm
Low Complexity Region (SEG)
MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAellelsnlevldlSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPHSESVFTFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFRLQPKADARTRRVRGHRQRM
Disordered region (IsUnstruct)
***SLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGP*********************VFTFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFRL******************
Disordered Region (DISOPRED)
*****TF*TFRHLVLFSFLIFHLAIAHFISST*****DRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPL*************************WKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFRLQPKADA************
Disordered Region (DISEMBL)
MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKK***************ESVFTFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFRLQPK***************
Disordered Region (DISPRO)
*GLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPHSESVFTFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFRLQPK***RT**********
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPHSESVFTFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFRLQPKADARTRRVRGHRQRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.674	0.269	0.344	6e-25
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.603	0.203	0.344	6e-17
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.541	0.179	0.318	4e-16
O49545	1003	Leucine-rich repeat recep	no	no	0.609	0.205	0.327	2e-15
O82318	960	Probably inactive leucine	no	no	0.576	0.203	0.345	2e-15
Q9SGP2	996	Receptor-like protein kin	no	no	0.579	0.196	0.284	4e-14
C0LGW6	966	LRR receptor-like serine/	no	no	0.668	0.233	0.287	1e-13
C0LGR3	1091	Probable LRR receptor-lik	no	no	0.600	0.186	0.309	1e-13
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.562	0.193	0.320	1e-13
Q6XAT2	967	LRR receptor-like serine/	no	no	0.665	0.232	0.282	3e-13

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  115 bits (287), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 19/247 (7%)

Query: 11  RHLVLFSFLIFHLAI-AHFISSTQP-LCHDRERSALLNFKESLVINQTASSYSSTYPKVA 68
           RH V  S +I  L++  H ++S+ P  C D +R ALL F+    IN       +++  + 
Sbjct: 7   RHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPIN-------ASWHIMN 59

Query: 69  TWK-PDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFD 127
            W+ P  K+ DCC W+GV CN+ +G V+ LD+ ++ L   + + SSLF+L +L+ L L +
Sbjct: 60  QWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTN 119

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187
            N  + EIPS++ N S LT +NL  + F G+IPA +  L+ L  L L+ +      L  +
Sbjct: 120 CNL-YGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANN-----VLTGE 173

Query: 188 KPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLP 247
            P  ++L  NL+ L  L+L +  +   +P ++ +L  LR  SL+   L GE P  +  L 
Sbjct: 174 IP--SSLG-NLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLS 230

Query: 248 NLQFLGL 254
           NL  L L
Sbjct: 231 NLVHLVL 237

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 109/229 (47%), Gaps = 25/229 (10%)

Query: 25  IAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDG 84
           I+H  +  +P+    E  ALL+ K S  I++ +       P + +W     +   CSW G
Sbjct: 15  ISHSFTVAKPIT---ELHALLSLKSSFTIDEHS-------PLLTSWN---LSTTFCSWTG 61

Query: 85  VKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSR 144
           V C+    HV  LDL+   L G++  +S +  L  LQ LSL  N  +   IP  I N   
Sbjct: 62  VTCDVSLRHVTSLDLSGLNLSGTL--SSDVAHLPLLQNLSLAANQIS-GPIPPQISNLYE 118

Query: 145 LTHLNLSQSYFSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKA 203
           L HLNLS + F+G  P EL   L NL VLDL Y+N  T  L +          NLT L+ 
Sbjct: 119 LRHLNLSNNVFNGSFPDELSSGLVNLRVLDL-YNNNLTGDLPVS-------LTNLTQLRH 170

Query: 204 LDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252
           L L   + S  +P T      L + ++SG  L G+ P EI  L  L+ L
Sbjct: 171 LHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLREL 219

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 24/207 (11%)

Query: 67  VATWKPDEKNK---DCCSWDGVKCN----------EDTGHVVELDLASSCLYGSINSTSS 113
           +  WK +E +    +CC W G+ C            ++G VVEL+L    L G +  + S
Sbjct: 48  IDGWKWNESSSFSSNCCDWVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKL--SES 105

Query: 114 LFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLD 173
           + +L  L+ L+L  N+ + S I +++LN S L  L+LS + FSG  P+ L+ L +L VL+
Sbjct: 106 VAKLDQLKVLNLTHNSLSGS-IAASLLNLSNLEVLDLSSNDFSGLFPS-LINLPSLRVLN 163

Query: 174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGC 233
           +  ++F            A+L  NL  ++ +DL   +   ++P  + N SS+ +  L+  
Sbjct: 164 VYENSFHGLIP-------ASLCNNLPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASN 216

Query: 234 RLQGEFPQEIFQLPNLQFLGLCGGPLS 260
            L G  PQE+FQL NL  L L    LS
Sbjct: 217 NLSGSIPQELFQLSNLSVLALQNNRLS 243

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 23/229 (10%)

Query: 25  IAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDG 84
           I+H  ++++P+   R   ALL+ K SL    T +      P +++WK    +   C+W G
Sbjct: 13  ISHTFTASRPISEFR---ALLSLKTSL----TGAGDDKNSP-LSSWK---VSTSFCTWIG 61

Query: 85  VKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSR 144
           V C+    HV  LDL+   L G+++   S  +L  LQ LSL +N  +   IP  I + S 
Sbjct: 62  VTCDVSRRHVTSLDLSGLNLSGTLSPDVSHLRL--LQNLSLAENLIS-GPIPPEISSLSG 118

Query: 145 LTHLNLSQSYFSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKA 203
           L HLNLS + F+G  P E+   L NL VLD+ Y+N  T  L +          NLT L+ 
Sbjct: 119 LRHLNLSNNVFNGSFPDEISSGLVNLRVLDV-YNNNLTGDLPVS-------VTNLTQLRH 170

Query: 204 LDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252
           L L   + +  +P +  +   + + ++SG  L G+ P EI  L  L+ L
Sbjct: 171 LHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLREL 219

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 107/220 (48%), Gaps = 25/220 (11%)

Query: 37  HDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVE 96
           H  E   LL+FK         SS       +++W     N D C W GV CN +   VV 
Sbjct: 28  HANELELLLSFK---------SSIQDPLKHLSSWSYSSTN-DVCLWSGVVCN-NISRVVS 76

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSR--LTHLNLSQSY 154
           LDL+   + G I  T++ F+L  LQ ++L +NN +   IP  I   S   L +LNLS + 
Sbjct: 77  LDLSGKNMSGQI-LTAATFRLPFLQTINLSNNNLS-GPIPHDIFTTSSPSLRYLNLSNNN 134

Query: 155 FSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
           FSG IP   L   NL  LDLS + F           + N     +NL+ LDL    ++  
Sbjct: 135 FSGSIPRGFLP--NLYTLDLSNNMF--------TGEIYNDIGVFSNLRVLDLGGNVLTGH 184

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           VP  L NLS L F +L+  +L G  P E+ ++ NL+++ L
Sbjct: 185 VPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 36/232 (15%)

Query: 48  KESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGS 107
           ++  ++ Q   S       +++W  ++ +   C W GV C  D   V  +DL+S+ L G 
Sbjct: 18  QDGFILQQVKLSLDDPDSYLSSWNSNDASP--CRWSGVSCAGDFSSVTSVDLSSANLAGP 75

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFS-----------------------EIPSAILNFSR 144
             S   + +L +L  LSL++N+ N +                       E+P  + +   
Sbjct: 76  FPSV--ICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLADIPT 133

Query: 145 LTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKAL 204
           L HL+L+ + FSG IPA   +  NLEVL L Y+  D        P L     N++ LK L
Sbjct: 134 LVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTI----PPFLG----NISTLKML 185

Query: 205 DL-INVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLC 255
           +L  N    S +P    NL++L    L+ C L G+ P  + QL  L  L L 
Sbjct: 186 NLSYNPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLA 237

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 114/254 (44%), Gaps = 28/254 (11%)

Query: 19  LIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKD 78
           ++  LA+  F+        + E  AL+  K          S+S+    +  W  D  N D
Sbjct: 8   MVLSLAMVGFMVFGVASAMNNEGKALMAIK---------GSFSNLVNMLLDWD-DVHNSD 57

Query: 79  CCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSA 138
            CSW GV C+  +  VV L+L+S  L G I  + ++  L +LQ + L  N     +IP  
Sbjct: 58  LCSWRGVFCDNVSYSVVSLNLSSLNLGGEI--SPAIGDLRNLQSIDLQGNKL-AGQIPDE 114

Query: 139 ILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL 198
           I N + L +L+LS++   G IP  + +L  LE L+L  +       +L  P  A L + +
Sbjct: 115 IGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNN-------QLTGPVPATLTQ-I 166

Query: 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGP 258
            NLK LDL   H++  +   L     L++  L G  L G    ++ QL  L +  + G  
Sbjct: 167 PNLKRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRG-- 224

Query: 259 LSKKCNNSEASPPE 272
                NN   + PE
Sbjct: 225 -----NNLTGTIPE 233

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGR3|Y4265_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 23/226 (10%)

Query: 38  DRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVEL 97
           D++  ALL++K  L  N +  ++SS +  VA   P       C+W GVKCN   G V E+
Sbjct: 26  DQQGQALLSWKSQL--NISGDAFSSWH--VADTSP-------CNWVGVKCNR-RGEVSEI 73

Query: 98  DLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSG 157
            L    L GS+  TS   + +         +      IP  I +F+ L  L+LS +  SG
Sbjct: 74  QLKGMDLQGSLPVTS--LRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSG 131

Query: 158 QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPH 217
            IP E+  L  L+ L L+ +N +  ++ ++         NL+ L  L L +  +S  +P 
Sbjct: 132 DIPVEIFRLKKLKTLSLNTNNLEG-HIPME-------IGNLSGLVELMLFDNKLSGEIPR 183

Query: 218 TLANLSSLRFSSLSGCR-LQGEFPQEIFQLPNLQFLGLCGGPLSKK 262
           ++  L +L+     G + L+GE P EI    NL  LGL    LS K
Sbjct: 184 SIGELKNLQVLRAGGNKNLRGELPWEIGNCENLVMLGLAETSLSGK 229

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 25/215 (11%)

Query: 78  DCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS 137
           D C+W GVKCN+++  V+ELD++   L G I  + S+  L  L  L L   NF   +IP 
Sbjct: 52  DVCNWSGVKCNKESTQVIELDISGRDLGGEI--SPSIANLTGLTVLDL-SRNFFVGKIPP 108

Query: 138 AILNFSR-LTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTF-------------- 182
            I +    L  L+LS++   G IP EL  L+ L  LDL  +  +                
Sbjct: 109 EIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSL 168

Query: 183 -YLKLQKPGLA-----NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236
            Y+ L    L      N   +L  L+ L L +  ++ TVP +L+N ++L++  L    L 
Sbjct: 169 QYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLS 228

Query: 237 GEFP-QEIFQLPNLQFLGLCGGPLSKKCNNSEASP 270
           GE P Q I ++P LQFL L         NN+   P
Sbjct: 229 GELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEP 263

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 30/255 (11%)

Query: 18  FLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNK 77
           F    + +   + S  P+  + E  AL+  K         +S+S+    +  W  D  N 
Sbjct: 11  FFCLGMVVFMLLGSVSPM--NNEGKALMAIK---------ASFSNVANMLLDWD-DVHNH 58

Query: 78  DCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS 137
           D CSW GV C+  + +VV L+L++  L G I  +S+L  L++LQ + L  N     +IP 
Sbjct: 59  DFCSWRGVFCDNVSLNVVSLNLSNLNLGGEI--SSALGDLMNLQSIDLQGNKLG-GQIPD 115

Query: 138 AILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN 197
            I N   L +++ S +   G IP  + +L  LE L+L  +       +L  P  A L + 
Sbjct: 116 EIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNN-------QLTGPIPATLTQ- 167

Query: 198 LTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGG 257
           + NLK LDL    ++  +P  L     L++  L G  L G    ++ QL  L +  + G 
Sbjct: 168 IPNLKTLDLARNQLTGEIPRLLYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRG- 226

Query: 258 PLSKKCNNSEASPPE 272
                 NN   + PE
Sbjct: 227 ------NNLTGTIPE 235

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
224140505	993	predicted protein [Populus trichocarpa]	0.730	0.248	0.587	5e-68
359485822	993	PREDICTED: receptor-like protein 12-like	0.727	0.247	0.586	1e-67
224140517	979	predicted protein [Populus trichocarpa]	0.748	0.258	0.593	1e-66
224140511	894	predicted protein [Populus trichocarpa]	0.736	0.278	0.586	4e-66
359490156	886	PREDICTED: receptor-like protein 12-like	0.656	0.250	0.598	3e-65
224140509	961	predicted protein [Populus trichocarpa]	0.642	0.225	0.617	7e-65
359485824	973	PREDICTED: receptor-like protein 12-like	0.730	0.253	0.568	2e-63
147866761	859	hypothetical protein VITISV_021527 [Viti	0.748	0.294	0.547	5e-63
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.692	0.233	0.572	2e-61
224140513	947	predicted protein [Populus trichocarpa]	0.736	0.262	0.478	2e-59

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 148/252 (58%), Positives = 179/252 (71%), Gaps = 5/252 (1%)

Query: 1   MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSY 60
           M   + F T R L L    +FHL   +  SS QPLCH+ E  ALL  KESL IN++ASS 
Sbjct: 1   MASPVCFLTIRMLFLVLLSLFHLRACYSSSSMQPLCHEDESYALLQLKESLAINESASSD 60

Query: 61  SSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHL 120
            S YPKVA+W+ D ++ DCCSWDGV+C+ D+GHV+ LDL+SSCL+GSINS SSLF LV L
Sbjct: 61  PSAYPKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLHGSINSNSSLFHLVQL 120

Query: 121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFD 180
           +RL+L  N+FN S++PS I N SRL  LNLS S FSGQIPAE+LELS L  LDL +++  
Sbjct: 121 RRLNLSGNDFNNSKMPSEIRNLSRLFDLNLSYSNFSGQIPAEILELSKLVSLDLRWNS-- 178

Query: 181 TFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP 240
              LKL+KPGL +L E LTNL+ L L  V IS+ VP  +ANLSSL    LS C LQGEFP
Sbjct: 179 ---LKLRKPGLQHLVEALTNLEVLHLSGVSISAEVPQIMANLSSLSSLFLSYCGLQGEFP 235

Query: 241 QEIFQLPNLQFL 252
             IFQLPNL+FL
Sbjct: 236 MGIFQLPNLRFL 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 149/254 (58%), Positives = 175/254 (68%), Gaps = 8/254 (3%)

Query: 7   FFTFRHLVLFSFLIFHLAIAHFISSTQ-PLCHDRERSALLNFKESLVINQTASSYSSTYP 65
           F   R L L S   FHL + +  SS Q PLCHD E SALL FK+S +I++ AS  S  YP
Sbjct: 8   FILMRFLALLS--SFHLIVTNSSSSVQQPLCHDNESSALLQFKQSFLIDEYASEDSYAYP 65

Query: 66  KVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSL 125
           KVATWK   +  DCCSWDGV+C+ +TGHV+ L LASSCLYGSINS+S+LF LVHL+RL L
Sbjct: 66  KVATWKSHGEGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDL 125

Query: 126 FDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELSNLEVLDLSYSNFDTFYL 184
            DN+FN+SEIP  +   SRL  LNLS S FSGQIP+E LL LS L  LDLS +      L
Sbjct: 126 SDNDFNYSEIPHGVSQLSRLRSLNLSDSQFSGQIPSEVLLALSKLVFLDLSGNPM----L 181

Query: 185 KLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF 244
           +LQK GL NL +NLT  K L L  V+ISST+PH LANLSSL    L  C L GEFP++I 
Sbjct: 182 QLQKHGLRNLVQNLTLFKKLHLSQVNISSTIPHALANLSSLTSLRLRECGLHGEFPKKIL 241

Query: 245 QLPNLQFLGLCGGP 258
           QLP+LQFL L   P
Sbjct: 242 QLPSLQFLSLRYNP 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 153/258 (59%), Positives = 182/258 (70%), Gaps = 5/258 (1%)

Query: 1   MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSY 60
           M   + F T R L LFS  +FHL   +   S QPLCH+ E  ALL  KESLVIN++ASS 
Sbjct: 1   MASPVCFLTMRMLFLFSLSLFHLRACYSSPSMQPLCHEDESYALLQIKESLVINESASSD 60

Query: 61  SSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHL 120
            S YPKVA+W+ D ++ DCCSWDGV+C+ D+GHV+ LDL+SSCLYGSI+S SSLF+LV L
Sbjct: 61  PSAYPKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSNSSLFRLVLL 120

Query: 121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFD 180
           +RL L DN+FN SEIPS I N SRL  LNLS S FSGQIPAE+LELS L  LDL  ++  
Sbjct: 121 RRLHLADNDFNKSEIPSEIRNLSRLFDLNLSMSGFSGQIPAEILELSKLVSLDLGVNS-- 178

Query: 181 TFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP 240
              LKLQKPGL +L E LTNL+ L L  V+IS+ VP  + NLSSL    L  C LQGEFP
Sbjct: 179 ---LKLQKPGLQHLVEALTNLEVLHLTGVNISAKVPQIMTNLSSLSSLFLRDCGLQGEFP 235

Query: 241 QEIFQLPNLQFLGLCGGP 258
             IFQLPNL+FL +   P
Sbjct: 236 MGIFQLPNLRFLSIRNNP 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/254 (58%), Positives = 177/254 (69%), Gaps = 5/254 (1%)

Query: 1   MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSY 60
           M  S+ F T R L+LF    FHL   H   S QPLCHD E  ALL FKESLVIN++AS  
Sbjct: 1   MPSSVRFLTMRMLLLFLLSFFHLRACHSSPSMQPLCHDDESYALLQFKESLVINESASYE 60

Query: 61  SSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHL 120
            S YPKVA+WK D +  +CCSWDGV+C+ D+GHV+ LDL+SSCLYGSI+S SSLF LV L
Sbjct: 61  PSAYPKVASWKADGERGNCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSNSSLFHLVQL 120

Query: 121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFD 180
           +RL+L DN+FN S+IPS I N SRL  LNL+   FSGQIPAE+LELS L  LDL  +   
Sbjct: 121 RRLNLADNDFNNSKIPSGIRNLSRLVDLNLTMDGFSGQIPAEILELSELVSLDLGLN--- 177

Query: 181 TFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP 240
              LKLQ PGL +L E LTNL+ L L  V+IS+ +P  + NLSSL   SL  CRLQGEFP
Sbjct: 178 --PLKLQNPGLQHLVEALTNLEVLHLSGVNISAKIPQIMTNLSSLSSLSLRNCRLQGEFP 235

Query: 241 QEIFQLPNLQFLGL 254
             IFQLPNL+   +
Sbjct: 236 MGIFQLPNLRLFSI 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/229 (59%), Positives = 163/229 (71%), Gaps = 7/229 (3%)

Query: 33  QPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWK---PDEKNKDCCSWDGVKCNE 89
           QPLCHD ERSALL FK+S +I+  AS   S YPKVA WK     E+  DCCSWDGV+C+ 
Sbjct: 11  QPLCHDSERSALLQFKQSFLIDGHASGDPSAYPKVAMWKSHGEGEEGSDCCSWDGVECDR 70

Query: 90  DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLN 149
           +TGHV+ L LASSCLYGSINS S+LF LVHL+RL L DN+FN+S+IP  +   SRL  L+
Sbjct: 71  ETGHVIGLHLASSCLYGSINSNSTLFSLVHLRRLDLSDNDFNYSQIPFGVGQLSRLRSLD 130

Query: 150 LSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINV 209
           LS   F+GQIP+ELL LS L  L+LS +      L+LQKPGL  L +NLT+LK L L  V
Sbjct: 131 LSSDRFAGQIPSELLALSKLVFLNLSANPM----LQLQKPGLRYLVQNLTHLKELHLRQV 186

Query: 210 HISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGP 258
           +ISST+PH LANLSSLR   L  C L GEFP  IFQLP+LQFL +   P
Sbjct: 187 NISSTIPHELANLSSLRTLFLRECGLHGEFPMNIFQLPSLQFLSVRYNP 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 137/222 (61%), Positives = 167/222 (75%), Gaps = 5/222 (2%)

Query: 33  QPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTG 92
           QPLC+D E  ALL FKESLVIN++ASSYSS  PKVA+WK D ++ DCCSW+GV+C+ D+G
Sbjct: 2   QPLCNDEESHALLQFKESLVINESASSYSSACPKVASWKVDGESGDCCSWEGVECDRDSG 61

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
           HV+ LDL+SSCL+GSI+S SSLF LV L+RL+L DN+FN S+IPS I N  RL  LNLS 
Sbjct: 62  HVIGLDLSSSCLHGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSEIRNLPRLFDLNLSI 121

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           + F+GQIPAE+LELS L  LDL  ++     LKLQKPGL +L E LTNL+ L L  V+IS
Sbjct: 122 TGFTGQIPAEILELSKLVSLDLGLNS-----LKLQKPGLQHLVEALTNLEVLHLSEVNIS 176

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           + VP  + NLSSL    L  C LQGEFP  IFQLPNL+FL +
Sbjct: 177 AKVPQVMTNLSSLSSLFLRDCGLQGEFPMGIFQLPNLRFLNI 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/257 (56%), Positives = 180/257 (70%), Gaps = 10/257 (3%)

Query: 1   MGLSLTFFTFRHLVLFSFLIFHLAIAHFISST-QPLCHDRERSALLNFKESLVINQTASS 59
           MG +L  F F   +LF    F+L + +  SS  +PLCHD E SALL FK+S +I++ AS 
Sbjct: 1   MGSALYVFMFVRFLLF-LSSFYLMVTNSSSSMHRPLCHDSEGSALLQFKQSFLIDEHASG 59

Query: 60  YSSTYPKVATWKP----DEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLF 115
             S YPKVA WK     + +  DCCSWDGV+C+ +TGHV+ L LASSCLYGSINS+S+LF
Sbjct: 60  NPSAYPKVAMWKSHGEGEREGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLF 119

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS 175
            LVHLQRL L DN+FN+SEIP  +   SRL  L+LS S FSGQIP+ELL LS L  LDLS
Sbjct: 120 SLVHLQRLDLSDNDFNYSEIPFGVGQLSRLRSLDLSFSGFSGQIPSELLALSKLVFLDLS 179

Query: 176 YSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRL 235
            +      L+LQKPGL NL +NLT+LK L L  V+ISST+P+ LA+LSSL    L  C L
Sbjct: 180 ANP----KLQLQKPGLRNLVQNLTHLKKLHLSQVNISSTIPYELASLSSLTSLFLGECGL 235

Query: 236 QGEFPQEIFQLPNLQFL 252
            GEFP +IFQLP+LQ+L
Sbjct: 236 HGEFPMKIFQLPSLQYL 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866761|emb|CAN80989.1| hypothetical protein VITISV_021527 [Vitis vinifera]

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 143/261 (54%), Positives = 178/261 (68%), Gaps = 8/261 (3%)

Query: 1   MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQ-PLCHDRERSALLNFKESLVINQTASS 59
           MG +L  F F   +L     F+L + +  S+ Q PLCH  E SALL FK+S +I++ AS 
Sbjct: 1   MGSALYLFMFMRFLLLPS-SFYLMVTNASSAMQHPLCHXSESSALLQFKQSFLIDEDASD 59

Query: 60  YSSTYPKVATWKP--DEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQL 117
             S YPKV+TWK   + +  DCCSWDGV+C+++TGHV+ L LASSCLYGSINS+++LF L
Sbjct: 60  DPSAYPKVSTWKSHGEGEESDCCSWDGVECDKETGHVIGLHLASSCLYGSINSSNTLFSL 119

Query: 118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYS 177
           VHL  L L DN+FN+S +P  +   SRL  LNLS S FSGQIP+ELL LS L  LDLS +
Sbjct: 120 VHLSTLDLSDNDFNYSXVPHKVGQLSRLRSLNLSGSKFSGQIPSELLALSKLVFLDLSRN 179

Query: 178 NFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG 237
                 L+LQKPGL NL +NLT+LK L L  V+ISST+PH LANLSSL    L GC L G
Sbjct: 180 PM----LELQKPGLRNLVQNLTHLKTLHLNLVNISSTIPHVLANLSSLTSLLLRGCGLYG 235

Query: 238 EFPQEIFQLPNLQFLGLCGGP 258
           EFP  IF+LP+LQ L +   P
Sbjct: 236 EFPMNIFRLPSLQLLSVRYNP 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/243 (57%), Positives = 173/243 (71%), Gaps = 9/243 (3%)

Query: 21  FHLAIAHFISST-QPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKP----DEK 75
           F+L +A+  SS  QPLCHD E SALL FK+S +I++ AS+  S YPKVA WK     + +
Sbjct: 20  FYLMVANSSSSMRQPLCHDSESSALLQFKQSFLIDERASADPSAYPKVAMWKSHGEGEGE 79

Query: 76  NKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEI 135
             DCCSWDGV+C+ +TGHV+ L LASSCLYGSINS+S+LF LVHL+RL L DN+FN+S I
Sbjct: 80  ESDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSVI 139

Query: 136 PSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA 195
           P  +   SRL  L+LS S FSGQIP++LL LS L  LDLS +      L+LQKPGL NL 
Sbjct: 140 PFGVGQLSRLRSLDLSYSRFSGQIPSKLLALSKLVFLDLSANPM----LQLQKPGLRNLV 195

Query: 196 ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLC 255
           +NLT+LK L L  V+I ST+PH LA+LSSL    L  C L GEFP +IFQLP+LQ+L + 
Sbjct: 196 QNLTHLKKLHLSQVNIFSTIPHELASLSSLTSLFLRECGLHGEFPMKIFQLPSLQYLSVR 255

Query: 256 GGP 258
             P
Sbjct: 256 YNP 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/278 (47%), Positives = 166/278 (59%), Gaps = 29/278 (10%)

Query: 1   MGLSLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSY 60
           M  S+ F T R L LF    FHL   H   S QPLCHD E  AL+ FKESLVI+++AS  
Sbjct: 1   MASSVCFLTMRMLSLFLLSFFHLRACHSSPSMQPLCHDEESHALMQFKESLVIHRSASYD 60

Query: 61  SSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHL 120
            + YPKVA+W  D ++ DCCSWDGV+C+ D+GHV+ LDL+SSCLYGSI+S SSLF LV L
Sbjct: 61  PAAYPKVASWSVDRESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSNSSLFHLVQL 120

Query: 121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFD 180
           +RL L DN+FN S+IPS I N SRL  L+LS S FSGQIPAE+LELS L  LDL +++  
Sbjct: 121 RRLDLADNDFNNSKIPSEIRNLSRLFDLDLSYSSFSGQIPAEILELSKLVSLDLGWNS-- 178

Query: 181 TFYLKLQKPGLANLAENLTNLKALD------------------------LINVHISSTVP 216
              LKLQKPGL +L + L NL+ L                         L     S  +P
Sbjct: 179 ---LKLQKPGLEHLVKALINLRFLSIQHNPYLSGYFPEIHWGSQLQTLFLAGTSFSGKLP 235

Query: 217 HTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
            ++ NL SL+   +  C   G  P  +  L  L +L L
Sbjct: 236 ESIGNLKSLKEFDVGDCNFSGVIPSSLGNLTKLNYLDL 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.677	0.224	0.42	9e-39
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.721	0.245	0.389	3.2e-36
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.547	0.255	0.351	3.5e-34
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.701	0.273	0.341	3.4e-28
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.677	0.242	0.354	1.1e-27
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.695	0.298	0.314	2.6e-27
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.671	0.230	0.353	4e-27
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.721	0.254	0.333	5.7e-26
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.695	0.330	0.329	1e-24
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.674	0.269	0.331	2.4e-24

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 9.0e-39, P = 9.0e-39
 Identities = 105/250 (42%), Positives = 140/250 (56%)

Query:    14 VLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPD 73
             + F  LI    I  F+S+TQ LCH  ++ ALL+FK    +  + S           W   
Sbjct:    53 ICFLILIPSFLIT-FVSATQHLCHSDQKDALLDFKNEFGMVDSKS-----------WV-- 98

Query:    74 EKNK-DCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNF 132
               NK DCCSWDG+ C+  +G+V+ LDL+S  LYG + S SSLF+L HL+ L+L +NNFN 
Sbjct:    99 --NKSDCCSWDGITCDAKSGNVIGLDLSSIFLYGQLKSNSSLFKLRHLRDLNLANNNFNN 156

Query:   133 SEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSNF---DTF-YLKLQK 188
             S IP+     + L  L+LSQS  SGQIP              S S+F   ++F YL + K
Sbjct:   157 SPIPAEFDKLTGLERLDLSQSSLSGQIPINLLQLTKLVSLDLSSSDFFGDESFHYLSIDK 216

Query:   189 PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPN 248
               L  LA NL NL+ LD+  V ISS +P   +N+ SLR  +L+GC L GEFP  I  +PN
Sbjct:   217 SFLPLLARNLRNLRELDMSYVKISSEIPEEFSNIRSLRSLNLNGCNLFGEFPSSILLIPN 276

Query:   249 LQFLGLCGGP 258
             LQ + L   P
Sbjct:   277 LQSIDLGNNP 286

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 3.2e-36, P = 3.2e-36
 Identities = 102/262 (38%), Positives = 136/262 (51%)

Query:     4 SLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKES---------LVIN 54
             S++FF    ++LFS   F      F S TQ  CH  +R ALL FK           L I+
Sbjct:     7 SMSFFLRTIVLLFSTSSF---CNTFASLTQDSCHPDQRDALLEFKNEFKIWYPNGFLDID 63

Query:    55 QTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSL 114
                   +S YPK  +W    KN DCC WDG+ C+  +G V  LDL+ SCL+G +   SSL
Sbjct:    64 GVLMDVTS-YPKTKSWT---KNSDCCYWDGITCDTKSGKVTGLDLSCSCLHGRLEPNSSL 119

Query:   115 FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXX 174
             F+L HLQ ++L  NNF  S IP+    F RL  LNLS+S FSG I               
Sbjct:   120 FRLQHLQSVNLAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHISIKLLQLTNLVSLDL 179

Query:   175 SYS-NFDTFYLKLQKPGLANL-AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG 232
             S S  +    L ++KP   +L A N  NL+ LD+ +V ISS +P   + + SLR  +L G
Sbjct:   180 SSSFPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIPIEFSYMWSLRSLTLKG 239

Query:   233 CRLQGEFPQEIFQLPNLQFLGL 254
             C L G FP  +  +PNL+ + L
Sbjct:   240 CNLLGRFPNSVLLIPNLESISL 261

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 3.5e-34, Sum P(2) = 3.5e-34
 Identities = 71/202 (35%), Positives = 101/202 (50%)

Query:    14 VLFSF-LIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKP 72
             V++S  LIF L+ +  ++  + LC   +R ALL FK    + Q    +        TW+ 
Sbjct:    12 VIWSLCLIFCLSNS-ILAIAKDLCLPDQRDALLEFKNEFYV-QEFDPHMKCEKATETWR- 68

Query:    73 DEKNK-DCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFN 131
                NK DCCSW+ V C+  TG VVELDL SSCL G + S SSLF+L HLQ L L  NN +
Sbjct:    69 ---NKTDCCSWNRVSCDPKTGKVVELDLMSSCLNGPLRSNSSLFRLQHLQSLELSSNNIS 125

Query:   132 FSEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSNFDTFYLKLQKPGL 191
                +P +I N   L  L+    +  G+IP+             SY++F +     + P  
Sbjct:   126 -GILPDSIGNLKYLRSLSFRTCHLFGKIPSSLGSLSYLTHLDLSYNDFTS-----EGPDS 179

Query:   192 ANLAENLTNLKALDLINVHISS 213
                  NL  L  L L+ +++SS
Sbjct:   180 GG---NLNRLTDLQLVLLNLSS 198

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 3.4e-28, P = 3.4e-28
 Identities = 87/255 (34%), Positives = 129/255 (50%)

Query:     4 SLTFFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSST 63
             S+  FTF  L+ F F      +  F   T+ LC   +R ALL  K+   I +    +   
Sbjct:     9 SIIPFTFSSLIFFLFTFDFQDV--FGVPTKHLCRLEQRDALLELKKEFKIKKPC--FDGL 64

Query:    64 YPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRL 123
             +P   +W     N DCC WDG+ CN+ +G V+ELDL+ SCL    +S SSLF +++L+ L
Sbjct:    65 HPTTESWA---NNSDCCYWDGITCNDKSGEVLELDLSRSCLQSRFHSNSSLFTVLNLRFL 121

Query:   124 SLFDNNFNF--SEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSNFDT 181
             +  D ++N+   +IPS I NFS LT L+LS++YFSG IP+             S + F  
Sbjct:   122 TTLDLSYNYFSGQIPSCIENFSHLTTLDLSKNYFSGGIPSSIGNLSQLTFLDLSGNEFVG 181

Query:   182 FYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQ 241
                  + P   N+ + LTNL  +D  +  ++   P +L NL  L   SLS  +  G  P 
Sbjct:   182 -----EMPFFGNMNQ-LTNLY-VD--SNDLTGIFPLSLLNLKHLSDLSLSRNQFTGTLPS 232

Query:   242 EIFQLPNLQFLGLCG 256
              +  L NL++    G
Sbjct:   233 NMSSLSNLEYFEAWG 247

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 89/251 (35%), Positives = 130/251 (51%)

Query:    14 VLFSFLI-FHLAIAHFISS-TQPLCHDRERSALLNFKESLVINQTASS-YS-------ST 63
             V  SFL+ F    A  +++ T+ LC   +R ALL  K    I + +S+ Y        S 
Sbjct:    14 VTLSFLLSFIHNFADVVAAPTRHLCLPEQRDALLELKNEFEIGKPSSNDYCYRNNSRVSP 73

Query:    64 YPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRL 123
             +P   +W+    N DCC+W+G+ C+  +G V+ELDL+ S LYGS +S SSLF+L +L+ L
Sbjct:    74 HPTTESWR---NNSDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQNLRVL 130

Query:   124 SLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSNFDTFY 183
              L  N+ +  EIPS+I N S LT L+LS + F G IP+             S + F    
Sbjct:   131 DLTQNDLD-GEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSG-- 187

Query:   184 LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEI 243
                Q P       NL++L +L+L +   S  +P ++ NLS+L F SL      G+ P  I
Sbjct:   188 ---QIPSSIG---NLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSI 241

Query:   244 FQLPNLQFLGL 254
               L  L +L L
Sbjct:   242 GNLARLTYLYL 252

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.6e-27, P = 2.6e-27
 Identities = 82/261 (31%), Positives = 132/261 (50%)

Query:    13 LVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKP 72
             + L+ FL+  L +    SS    C   +R ALL FK    ++++  S     P +++W  
Sbjct:    14 ITLYFFLLGSLVLRTLASSRLHYCRHDQRDALLEFKHEFPVSESKPS-----PSLSSWN- 67

Query:    73 DEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNF 132
               K  DCC W+GV C++++G VV LDL+   L  S+  TS LF+L  LQ L+L D +  +
Sbjct:    68 --KTSDCCFWEGVTCDDESGEVVSLDLSYVLLNNSLKPTSGLFKLQQLQNLTLSDCHL-Y 124

Query:   133 SEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSNFD----TFYLKLQK 188
              E+ S++ N SRLTHL+LS +  +G++ A             S ++F     T +  L K
Sbjct:   125 GEVTSSLGNLSRLTHLDLSSNQLTGEVLASVSKLNQLRDLLLSENSFSGNIPTSFTNLTK 184

Query:   189 PGLANLAEN----------LTNLKALDLINV---HISSTVPHTLANLSSLRFSSLSGCRL 235
                 +++ N          L NL +L  +NV   H  ST+P  ++ L +L++  +     
Sbjct:   185 LSSLDISSNQFTLENFSFILPNLTSLSSLNVASNHFKSTLPSDMSGLHNLKYFDVRENSF 244

Query:   236 QGEFPQEIFQLPNLQFLGLCG 256
              G FP  +F +P+LQ + L G
Sbjct:   245 VGTFPTSLFTIPSLQIVYLEG 265

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 4.0e-27, P = 4.0e-27
 Identities = 87/246 (35%), Positives = 129/246 (52%)

Query:     7 FFTFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYP- 65
             + T   L++   LIF+  +  F +ST+ LC   +  A+L FK      +  S + S  P 
Sbjct:     5 YITLSFLII---LIFNF-LDEFAASTRHLCDPDQSDAILEFKNEFETLEE-SCFDSNIPL 59

Query:    66 KVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSL 125
             K  +W     N DCC WDG+KC+   G V+ELDL+ SCL G +NS SSLF+L  L+ L+ 
Sbjct:    60 KTESWT---NNSDCCYWDGIKCDAKFGDVIELDLSFSCLRGQLNSNSSLFRLPQLRFLTT 116

Query:   126 FD--NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSNFDTFY 183
              D  NN    +IPS++   S LT L+LS+++FSG+IP+             S++NF    
Sbjct:   117 LDLSNNDFIGQIPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSG-- 174

Query:   184 LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEI 243
                Q P  ++L   L++L + +L   + S  VP ++ NLS L    LS     GE P  +
Sbjct:   175 ---QIP--SSLGY-LSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSSL 228

Query:   244 FQLPNL 249
               L +L
Sbjct:   229 GSLFHL 234

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 5.7e-26, P = 5.7e-26
 Identities = 87/261 (33%), Positives = 126/261 (48%)

Query:     7 FFTFRHLVLFSFLIFHLAIAHFI----SSTQPLCHDRERSALLNFKESLVINQTASSYSS 62
             F+  + ++  +     L I HF+    + T+ LC   +R ALL FK    I + +  +  
Sbjct:     4 FWNSKSIIRITLSFIFLFICHFLDVLAAPTRNLCRPEQRDALLAFKNEFEIGKPSPDHCK 63

Query:    63 TYPKVATWKPDE--KNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHL 120
              Y   +  K D    N DCC+W+GV CN  +G V+ELDL+ S L+G  +S SS+  L  L
Sbjct:    64 IYGIESPRKTDSWGNNSDCCNWEGVTCNAKSGEVIELDLSCSSLHGRFHSNSSIRNLHFL 123

Query:   121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSN-F 179
               L L  N+F   +I S+I N S LT+L+LS ++FSGQI               +Y N F
Sbjct:   124 TTLDLSFNDFK-GQITSSIENLSHLTYLDLSSNHFSGQI-----LNSIGNLSRLTYLNLF 177

Query:   180 DTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEF 239
             D  +   Q P  +++  NL++L  LDL         P ++  LS L   SL   +  G+ 
Sbjct:   178 DNQFSG-QAP--SSIC-NLSHLTFLDLSYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQI 233

Query:   240 PQEIFQLPNLQFLGLCGGPLS 260
             P  I  L NL  L L     S
Sbjct:   234 PSSIGNLSNLTTLDLSNNNFS 254

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 83/252 (32%), Positives = 118/252 (46%)

Query:     9 TFRHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTY---- 64
             T R  + F FL          + T+ LC   ++ ALL FK    I +    Y + Y    
Sbjct:    10 TIRITLSFIFLFISQFSDVLAAPTRHLCRPEQKDALLKFKTEFEIGKPCR-YCTVYCIEP 68

Query:    65 -PKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRL 123
              PK  +W     N DCC+W+GV CN  +G V+ELDL+ S L+G  +S SS+  L  L  L
Sbjct:    69 HPKTESW--GNNNSDCCNWEGVTCNAKSGEVIELDLSCSYLHGRFHSNSSIRNLHFLTTL 126

Query:   124 SLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSNFDTFY 183
              L  N+F   +I S+I N S LT+L+LS ++FSGQ+P+             S+  F   Y
Sbjct:   127 DLSFNDFK-GQIMSSIENLSHLTYLDLSFNHFSGQVPSSIGNL--------SHLTFLDLY 177

Query:   184 LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEI 243
                    + +   NL++L  L+L         P ++  LS L   +L      G+ P  I
Sbjct:   178 CNQFSGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPSSI 237

Query:   244 FQLPNLQFLGLC 255
               L NL  L LC
Sbjct:   238 GNLSNLTSLYLC 249

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.4e-24, P = 2.4e-24
 Identities = 82/247 (33%), Positives = 130/247 (52%)

Query:    11 RHLVLFSFLIFHLAI-AHFISSTQP-LCHDRERSALLNFKESLVINQTASSYSSTYPKVA 68
             RH V  S +I  L++  H ++S+ P  C D +R ALL F+    IN       +++  + 
Sbjct:     7 RHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPIN-------ASWHIMN 59

Query:    69 TWK-PDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFD 127
              W+ P  K+ DCC W+GV CN+ +G V+ LD+ ++ L   + + SSLF+L +L+ L L +
Sbjct:    60 QWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTN 119

Query:   128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAXXXXXXXXXXXXXSYSNFDTFYLKLQ 187
              N  + EIPS++ N S LT +NL  + F G+IPA             + +N  T  +   
Sbjct:   120 CNL-YGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILA-NNVLTGEI--- 174

Query:   188 KPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLP 247
              P  ++L  NL+ L  L+L +  +   +P ++ +L  LR  SL+   L GE P  +  L 
Sbjct:   175 -P--SSLG-NLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLS 230

Query:   248 NLQFLGL 254
             NL  L L
Sbjct:   231 NLVHLVL 237

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVI001173 hypothetical protein (993 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 59/243 (24%)

Query: 13  LVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKP 72
            ++F           F++ +  + H  E   LL+FK S+        Y S       W  
Sbjct: 11  YLIFMLFFL------FLNFS--MLHAEELELLLSFKSSI---NDPLKYLSN------WNS 53

Query: 73  DEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNF 132
              + D C W G+ CN ++  VV +DL+   + G I  +S++F+L ++Q ++L +N  + 
Sbjct: 54  ---SADVCLWQGITCN-NSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSG 107

Query: 133 SEIPSAILNFS-RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGL 191
             IP  I   S  L +LNLS + F+G IP                               
Sbjct: 108 -PIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----------------------------- 137

Query: 192 ANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251
                ++ NL+ LDL N  +S  +P+ + + SSL+   L G  L G+ P  +  L +L+F
Sbjct: 138 -----SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 252 LGL 254
           L L
Sbjct: 193 LTL 195

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 15/166 (9%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFD--NNFNFSEIPSAILNFSRLTHLNLSQSY 154
           LDL+++ L G I +    F       L + D   N    +IP+++ N + L  L L+ + 
Sbjct: 145 LDLSNNMLSGEIPNDIGSFS-----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 155 FSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
             GQIP EL ++ +L+ + L Y+N            +      LT+L  LDL+  +++  
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSG--------EIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
           +P +L NL +L++  L   +L G  P  IF L  L  L L    LS
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 16/173 (9%)

Query: 90  DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLN 149
            +G++ +L L S+ L G I    SL     L+R+ L DN+F+  E+PS       +  L+
Sbjct: 378 SSGNLFKLILFSNSLEGEI--PKSLGACRSLRRVRLQDNSFS-GELPSEFTKLPLVYFLD 434

Query: 150 LSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL--TNLKALDLI 207
           +S +   G+I +   ++ +L++L L+ + F              L ++     L+ LDL 
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKF-----------FGGLPDSFGSKRLENLDLS 483

Query: 208 NVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
               S  VP  L +LS L    LS  +L GE P E+     L  L L    LS
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 67/217 (30%), Positives = 97/217 (44%), Gaps = 45/217 (20%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS 156
           LDL  + L G I   SSL  L +LQ L L+ N  +   IP +I +  +L  L+LS +  S
Sbjct: 241 LDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLS-GPIPPSIFSLQKLISLDLSDNSLS 297

Query: 157 GQIPAELLELSNLEVLDLSYSNFD-------TFYLKLQKPGL----------ANLAENLT 199
           G+IP  +++L NLE+L L  +NF        T   +LQ   L           NL ++  
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-N 356

Query: 200 NLKALDLINVHISSTVPHTLANLSSLR----FS---------SLSGC------RLQ---- 236
           NL  LDL   +++  +P  L +  +L     FS         SL  C      RLQ    
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 237 -GEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPE 272
            GE P E  +LP + FL +    L  + N+ +   P 
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 32/166 (19%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNF---------------------NFSE- 134
           LD++++ L G INS    + +  LQ LSL  N F                      FS  
Sbjct: 433 LDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA 490

Query: 135 IPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL 194
           +P  + + S L  L LS++  SG+IP EL     L  LDLS++         Q P  A+ 
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG-----QIP--ASF 543

Query: 195 AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP 240
           +E +  L  LDL    +S  +P  L N+ SL   ++S   L G  P
Sbjct: 544 SE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query: 76  NKDCCS-----WDGVKCNED--TGH--VVELDLASSCLYGSINSTSSLFQLVHLQRLSLF 126
           N D C      W G  C  D   G   +  L L +  L G I +  S  +L HLQ ++L 
Sbjct: 393 NGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLS 450

Query: 127 DNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL 174
            N+     IP ++ + + L  L+LS + F+G IP  L +L++L +L+L
Sbjct: 451 GNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 53/212 (25%), Positives = 76/212 (35%), Gaps = 63/212 (29%)

Query: 135 IPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL 194
           IP+ I     L  +NLS +   G IP  L  +++LEVLDLSY++F               
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF--------------- 478

Query: 195 AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLP----NLQ 250
                            + ++P +L  L+SLR  +L+G  L G  P  +        +  
Sbjct: 479 -----------------NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521

Query: 251 FL---GLCGGPLSKKCNNSEASPPEEDPHSESVFTFGWKTVVIGYASGTIIGVILGHIFS 307
           F    GLCG P  + C           PH             IG A G  +  +   I +
Sbjct: 522 FTDNAGLCGIPGLRACG----------PHLSV-------GAKIGIAFGVSVAFLFLVICA 564

Query: 308 TRKYEWLAKTFRLQ-------PKADARTRRVR 332
              ++      R Q       P A ART   R
Sbjct: 565 MCWWKRRQNILRAQRIAAREAPYAKARTHFSR 596

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 10/52 (19%)

Query: 37 HDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCN 88
           + +R ALL FK SL  + + +         ++W P   + D CSW GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGAL--------SSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 15/150 (10%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171
           S L  L +L+ L L  N+   S++P  + N S L +L+LS +  S  +P E+  LS LE 
Sbjct: 157 SPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEE 213

Query: 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLS 231
           LDLS ++       L          NL NL  L+L N  +   +P ++ NLS+L    LS
Sbjct: 214 LDLSNNSIIELLSSL---------SNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLS 263

Query: 232 GCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261
             ++       +  L NL+ L L G  LS 
Sbjct: 264 NNQI--SSISSLGSLTNLRELDLSGNSLSN 291

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 11/131 (8%)

Query: 124 SLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFY 183
           SL  N        S +L  + LT L+L  +  +   P   L  SNL+ LDLS +  ++  
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-- 154

Query: 184 LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEI 243
                  L +   NL NLK LDL    +S      L+NLS+L    LSG ++  + P EI
Sbjct: 155 -------LPSPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKIS-DLPPEI 205

Query: 244 FQLPNLQFLGL 254
             L  L+ L L
Sbjct: 206 ELLSALEELDL 216

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN03150	623	hypothetical protein; Provisional	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.54
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
PLN03150	623	hypothetical protein; Provisional	99.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.38
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.3
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.25
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.18
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.11
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.72
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.49
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.17
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.66
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.25
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.69
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
KOG4308	478	consensus LRR-containing protein [Function unknown	95.37
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.29
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.19
KOG4308	478	consensus LRR-containing protein [Function unknown	91.36
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.65
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.1
smart00370	26	LRR Leucine-rich repeats, outliers.	90.1
smart00370	26	LRR Leucine-rich repeats, outliers.	89.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.07
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.01
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.45
KOG4341	483	consensus F-box protein containing LRR [General fu	82.51
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	80.46

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=2e-26  Score=241.74  Aligned_cols=210  Identities=34%  Similarity=0.521  Sum_probs=140.4

Q ss_pred             CHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEcCCCCcEEEEEeCCCCceeecCCCCcccc
Q 019584           37 HDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQ  116 (338)
Q Consensus        37 ~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~  116 (338)
                      .++|+.||++||+.+.++..         .+.+|+   ...+||.|.|+.|+. .++|+.|||++|++.+.++.  .+..
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~---------~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~   91 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLK---------YLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFR   91 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcc---------cCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhC
Confidence            56899999999999864432         567897   567899999999975 36899999999999998877  8889


Q ss_pred             CcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCccc------------
Q 019584          117 LVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFY------------  183 (338)
Q Consensus       117 l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~------------  183 (338)
                      +++|+.|+|++|.+++. +|..+. .+++|++|+|++|.+++.+|.  +.+++|++|++++|.+++..            
T Consensus        92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  168 (968)
T PLN00113         92 LPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence            99999999999999865 776554 777888888877777665553  33555556666555543100            


Q ss_pred             -------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccC
Q 019584          184 -------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG  256 (338)
Q Consensus       184 -------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  256 (338)
                             +.   +.+|..+.++++|++|++++|.+.+.+|..++++++|++|+|++|.+++.+|..+..+++|++|++++
T Consensus       169 L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        169 LDLGGNVLV---GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             EECccCccc---ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence                   11   23444455555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCCcCCCCC
Q 019584          257 GPLSKKCNNSE  267 (338)
Q Consensus       257 N~l~~~~p~~~  267 (338)
                      |.+++.+|..+
T Consensus       246 n~l~~~~p~~l  256 (968)
T PLN00113        246 NNLTGPIPSSL  256 (968)
T ss_pred             ceeccccChhH
Confidence            55555555433

>PLN03150 hypothetical protein; Provisional

Probab=99.86  E-value=8.6e-21  Score=188.93  Aligned_cols=167  Identities=27%  Similarity=0.379  Sum_probs=97.9

Q ss_pred             CCCCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEcCCCCcEEEEEeCCCCceeecCCCC
Q 019584           33 QPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTS  112 (338)
Q Consensus        33 ~~~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~  112 (338)
                      ...+.++|..||+.+|+.+..+           ...+|+.+++.+..|.|.|+.|......                   
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~-----------~~~~W~g~~C~p~~~~w~Gv~C~~~~~~-------------------  415 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLP-----------LRFGWNGDPCVPQQHPWSGADCQFDSTK-------------------  415 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCc-----------ccCCCCCCCCCCcccccccceeeccCCC-------------------
Confidence            4567788999999999988542           1237875544444568999999532100                   


Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                         ....++.|+|++|.+.+. +|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+              
T Consensus       416 ---~~~~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~--------------  477 (623)
T PLN03150        416 ---GKWFIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS--------------  477 (623)
T ss_pred             ---CceEEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC--------------
Confidence               001133445555555443 55556666666666666666666666656555555555555555              


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCC-CCCCeeeccCCCCCCcCCC
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQL-PNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p~  265 (338)
                                        +++.+|+.++++++|++|+|++|.++|.+|..+... .++..+++.+|+..|.+|.
T Consensus       478 ------------------lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        478 ------------------FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             ------------------CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence                              334444455555555555555555555555554432 3456677778877666553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=7.9e-21  Score=199.59  Aligned_cols=164  Identities=24%  Similarity=0.358  Sum_probs=126.6

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcC-----------------------CCCcEE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNF-----------------------SRLTHL  148 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l-----------------------~~L~~L  148 (338)
                      ++++.|++++|.+++..|.  .+.+++.|+.|++++|.+++. +|..+..+                       ++|++|
T Consensus       404 ~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L  480 (968)
T PLN00113        404 RSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGR-INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL  480 (968)
T ss_pred             CCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCc-cChhhccCCCCcEEECcCceeeeecCcccccccceEE
Confidence            4667777777777766665  666666666666666666543 44444444                       455555


Q ss_pred             EcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCee
Q 019584          149 NLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS  228 (338)
Q Consensus       149 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  228 (338)
                      ++++|++++.+|..+..+++|++|++++|+++        +.+|..+.++++|++|++++|.+++.+|..+..+++|+.|
T Consensus       481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  552 (968)
T PLN00113        481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLS--------GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL  552 (968)
T ss_pred             ECcCCccCCccChhhhhhhccCEEECcCCcce--------eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence            66666666666666666777777777777643        5778888999999999999999999999999999999999


Q ss_pred             ecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          229 SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       229 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                      +|++|+++|.+|..+..+++|+.+++++|++.|.+|+.
T Consensus       553 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             ECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            99999999999999999999999999999999999853

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=2.9e-20  Score=150.00  Aligned_cols=160  Identities=27%  Similarity=0.406  Sum_probs=146.4

Q ss_pred             CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      ...+++.|.|++|.++ .+|+  .+..+.+|+.|++.+|+++  ++|..++.+++|+.|+++-|++. .+|..|+.++.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vpp--nia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPP--NIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             chhhhhhhhcccCcee-ecCC--cHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3568999999999998 5566  7999999999999999997  38999999999999999999999 899999999999


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL  249 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  249 (338)
                      +.|||++|++.+       ..+|..|..+..|+-|++++|.+. .+|+.++++++|+.|.+.+|.+- .+|.+++.+..|
T Consensus       105 evldltynnl~e-------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l  175 (264)
T KOG0617|consen  105 EVLDLTYNNLNE-------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL  175 (264)
T ss_pred             hhhhcccccccc-------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence            999999999764       578888889999999999999997 58999999999999999999998 899999999999


Q ss_pred             CeeeccCCCCCCcCC
Q 019584          250 QFLGLCGGPLSKKCN  264 (338)
Q Consensus       250 ~~L~l~~N~l~~~~p  264 (338)
                      ++|.+.+|.++--.|
T Consensus       176 relhiqgnrl~vlpp  190 (264)
T KOG0617|consen  176 RELHIQGNRLTVLPP  190 (264)
T ss_pred             HHHhcccceeeecCh
Confidence            999999999986444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=1e-16  Score=129.56  Aligned_cols=138  Identities=25%  Similarity=0.423  Sum_probs=126.2

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+.++.+++.|.|++|+++.  +|+.+..+.+|+.|++++|+++ .+|.+++.++.|+.|+++-|++         ..+|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl---------~~lp   95 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL---------NILP   95 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh---------hcCc
Confidence            56678899999999999984  7888999999999999999999 8999999999999999999996         3689


Q ss_pred             hhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          193 NLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      ..|+.++.|+.||+..|++.. .+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+-. .|
T Consensus        96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lp  166 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LP  166 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-Cc
Confidence            999999999999999999974 57888999999999999999999 899999999999999999998764 44

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.55  E-value=4e-15  Score=140.09  Aligned_cols=157  Identities=25%  Similarity=0.252  Sum_probs=128.8

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      ...+.||+++|.+...-+.  .|.++++|+.+++.+|.++.  +|.......+|+.|+|.+|.|+..-.+.+.-++.|+.
T Consensus        78 ~~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs  153 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS  153 (873)
T ss_pred             cceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence            4567899999999877666  78899999999999999973  7876666778999999999999666778888999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      ||||.|.|++..        ...+..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|..+++|+.
T Consensus       154 lDLSrN~is~i~--------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  154 LDLSRNLISEIP--------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES  225 (873)
T ss_pred             hhhhhchhhccc--------CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence            999999976421        234455578999999999998877788888889999999999998444456667899999


Q ss_pred             eeccCCCCC
Q 019584          252 LGLCGGPLS  260 (338)
Q Consensus       252 L~l~~N~l~  260 (338)
                      |+|..|.+.
T Consensus       226 LdLnrN~ir  234 (873)
T KOG4194|consen  226 LDLNRNRIR  234 (873)
T ss_pred             hhcccccee
Confidence            999888765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=3.7e-16  Score=148.12  Aligned_cols=153  Identities=28%  Similarity=0.353  Sum_probs=97.3

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCc----------------
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS----------------  156 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~----------------  156 (338)
                      +...|+|++|+|.....+  .+.++..|-+|||++|++.  .+|+.+..+.+|++|+|++|.+.                
T Consensus       127 n~iVLNLS~N~IetIPn~--lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL  202 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIETIPNS--LFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL  202 (1255)
T ss_pred             CcEEEEcccCccccCCch--HHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence            455666666666533222  4556777777777777764  26666666666777777666432                


Q ss_pred             ---------cccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584          157 ---------GQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF  227 (338)
Q Consensus       157 ---------~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  227 (338)
                               ..+|.++..+.+|..+|+|.|++         ..+|+.+.++++|+.|+||+|+++. +....+...+|++
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L---------p~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL---------PIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLET  272 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCC---------CcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhh
Confidence                     12455555556666666666654         2456667777777777777777763 4444455566777


Q ss_pred             eecccccCcccCchhccCCCCCCeeeccCCCCC
Q 019584          228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       228 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  260 (338)
                      |++|.|+++ .+|..+.++++|+.|.+.+|.++
T Consensus       273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             hccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            777777777 67777777777777777777665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.54  E-value=4.4e-15  Score=139.87  Aligned_cols=159  Identities=18%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      ++++|+|++|.|+..-..  .|..+.+|..|.|+.|+++.. .+..|.++++|+.|+|..|+|.-.---.|.++++|+.|
T Consensus       174 ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CceEEeeccccccccccc--cccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence            344444444444433322  444444444444444444432 23334445555555555444441112223333333333


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL  252 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  252 (338)
                      .|..|.+...        -...|..+.++++|+|+.|+++..--.++.++++|+.|+||+|.|...-++.+...++|+.|
T Consensus       251 klqrN~I~kL--------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L  322 (873)
T KOG4194|consen  251 KLQRNDISKL--------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL  322 (873)
T ss_pred             hhhhcCcccc--------cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence            3333333210        01123344455555555555544334444455555555555555554444444444555555


Q ss_pred             eccCCCCCCc
Q 019584          253 GLCGGPLSKK  262 (338)
Q Consensus       253 ~l~~N~l~~~  262 (338)
                      +|+.|.++.-
T Consensus       323 dLs~N~i~~l  332 (873)
T KOG4194|consen  323 DLSSNRITRL  332 (873)
T ss_pred             eccccccccC
Confidence            5555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.50  E-value=8e-16  Score=145.83  Aligned_cols=155  Identities=25%  Similarity=0.369  Sum_probs=129.1

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..++..+|++.|++. ..|.  .+.++.+|+.|+|++|.++.  +.-......+|++|+||.|+++ .+|+.++.++.|+
T Consensus       221 l~NL~dvDlS~N~Lp-~vPe--cly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLP-IVPE--CLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             hhhhhhccccccCCC-cchH--HHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            357778888888886 5556  77888888888888888874  4455666778888888888888 8888888899999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      .|.+.+|+++   +    ..+|..++++.+|+.+..++|.+. ..|+.+..+..|+.|.|+.|++- .+|+++.-++.|+
T Consensus       295 kLy~n~NkL~---F----eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  295 KLYANNNKLT---F----EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK  365 (1255)
T ss_pred             HHHhccCccc---c----cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence            9888888876   4    378889999999999999999886 58899999999999999999988 7899998899999


Q ss_pred             eeeccCCCCC
Q 019584          251 FLGLCGGPLS  260 (338)
Q Consensus       251 ~L~l~~N~l~  260 (338)
                      .||+..|+=-
T Consensus       366 vLDlreNpnL  375 (1255)
T KOG0444|consen  366 VLDLRENPNL  375 (1255)
T ss_pred             eeeccCCcCc
Confidence            9999988643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.50  E-value=2.7e-15  Score=135.69  Aligned_cols=152  Identities=29%  Similarity=0.449  Sum_probs=132.1

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCcc-EEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQ-RLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      -|+.++++.|++. ++|.  .+..++.+. .+.+++|.++.  +|..+..+++|..|+|++|.+. .+|..++.+..|+.
T Consensus       389 ~Vt~VnfskNqL~-elPk--~L~~lkelvT~l~lsnn~isf--v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~  462 (565)
T KOG0472|consen  389 IVTSVNFSKNQLC-ELPK--RLVELKELVTDLVLSNNKISF--VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQT  462 (565)
T ss_pred             ceEEEecccchHh-hhhh--hhHHHHHHHHHHHhhcCcccc--chHHHHhhhcceeeecccchhh-hcchhhhhhhhhhe
Confidence            4888999999987 4555  555555554 45667776653  7889999999999999999998 89999999999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      ||++.|+|         ..+|..+..+..++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|..++++++|++
T Consensus       463 LnlS~NrF---------r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h  532 (565)
T KOG0472|consen  463 LNLSFNRF---------RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH  532 (565)
T ss_pred             eccccccc---------ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence            99999985         378998888889999999999998777777999999999999999999 89999999999999


Q ss_pred             eeccCCCCC
Q 019584          252 LGLCGGPLS  260 (338)
Q Consensus       252 L~l~~N~l~  260 (338)
                      |+++||+|.
T Consensus       533 LeL~gNpfr  541 (565)
T KOG0472|consen  533 LELDGNPFR  541 (565)
T ss_pred             EEecCCccC
Confidence            999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=2.7e-14  Score=128.94  Aligned_cols=63  Identities=25%  Similarity=0.315  Sum_probs=53.8

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccc-ccCc
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ-SYFS  156 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~  156 (338)
                      +...++|+|..|+|+...+.  .|..+++|+.|||++|.|+.. -|.+|.++.+|..|-+.+ |+|+
T Consensus        66 P~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             CCcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh
Confidence            45778999999999977666  899999999999999999876 788999998887766655 8777

>PLN03150 hypothetical protein; Provisional

Probab=99.46  E-value=2.6e-13  Score=135.49  Aligned_cols=93  Identities=25%  Similarity=0.373  Sum_probs=86.9

Q ss_pred             CCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCC
Q 019584          168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLP  247 (338)
Q Consensus       168 ~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  247 (338)
                      .++.|+|++|.++        +.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++|.+|+.++.++
T Consensus       419 ~v~~L~L~~n~L~--------g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        419 FIDGLGLDNQGLR--------GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             EEEEEECCCCCcc--------ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            3788999999964        78899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeccCCCCCCcCCCCCC
Q 019584          248 NLQFLGLCGGPLSKKCNNSEA  268 (338)
Q Consensus       248 ~L~~L~l~~N~l~~~~p~~~~  268 (338)
                      +|+.|++++|.++|.+|....
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             CCCEEECcCCcccccCChHHh
Confidence            999999999999999997543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.38  E-value=2.5e-13  Score=124.82  Aligned_cols=164  Identities=24%  Similarity=0.258  Sum_probs=105.6

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcC---ccEEEccCCCCCCCC---CchhhhcC-CCCcEEEcccccCccc----c
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVH---LQRLSLFDNNFNFSE---IPSAILNF-SRLTHLNLSQSYFSGQ----I  159 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~---L~~L~L~~n~l~~~~---~p~~l~~l-~~L~~L~Ls~n~l~~~----~  159 (338)
                      ..+++.|++++|.+.+..+.  .+..+..   |+.|++++|.++...   +...+..+ ++|+.|++++|.+++.    +
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCG--VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhHHH--HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            35788888888887654433  4444444   888888888876321   22345566 7888888888887743    3


Q ss_pred             chhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccC
Q 019584          160 PAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRL  235 (338)
Q Consensus       160 p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l  235 (338)
                      +..+..+++|++|++++|.+++..+    ..++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGI----RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHH----HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            3445666788888888887653111    12334455567888888888877643    234455667788888888887


Q ss_pred             cccCchhcc-----CCCCCCeeeccCCCCC
Q 019584          236 QGEFPQEIF-----QLPNLQFLGLCGGPLS  260 (338)
Q Consensus       236 ~~~~p~~l~-----~l~~L~~L~l~~N~l~  260 (338)
                      ++.....+.     ..+.|+.|++++|.++
T Consensus       234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         234 TDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             chHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            753332222     1367888888888776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.35  E-value=2.1e-12  Score=129.84  Aligned_cols=105  Identities=26%  Similarity=0.326  Sum_probs=72.2

Q ss_pred             CCcEEEcccccCccccchhhcC-----------------CCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEc
Q 019584          144 RLTHLNLSQSYFSGQIPAELLE-----------------LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL  206 (338)
Q Consensus       144 ~L~~L~Ls~n~l~~~~p~~l~~-----------------l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~L  206 (338)
                      +|++|+|++|+++ .+|.....                 ..+|+.|++++|+++         .+|..   .++|+.|++
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt---------~LP~l---~s~L~~LdL  409 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT---------SLPVL---PSELKELMV  409 (788)
T ss_pred             ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc---------CCCCc---ccCCCEEEc
Confidence            5667777777766 34432111                 124555555555543         22321   356888888


Q ss_pred             cCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          207 INVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       207 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                      ++|.+++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..
T Consensus       410 S~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        410 SGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             cCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            8888875 5643   246788999999998 78999999999999999999999987753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=6.9e-13  Score=121.93  Aligned_cols=163  Identities=24%  Similarity=0.240  Sum_probs=122.6

Q ss_pred             CcEEEEEeCCCCcee------ecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCC---CcEEEcccccCcc----c
Q 019584           92 GHVVELDLASSCLYG------SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSR---LTHLNLSQSYFSG----Q  158 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~  158 (338)
                      +.++.++++++.+.+      .++.  .+..+++|+.|++++|.+... .+..+..+.+   |++|++++|.+++    .
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~  127 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQ--GLTKGCGLQELDLSDNALGPD-GCGVLESLLRSSSLQELKLNNNGLGDRGLRL  127 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHH--HHHhcCceeEEEccCCCCChh-HHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence            468899998887762      1222  466788999999999998754 5666666655   9999999999873    2


Q ss_pred             cchhhcCC-CCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccc
Q 019584          159 IPAELLEL-SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGC  233 (338)
Q Consensus       159 ~p~~l~~l-~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N  233 (338)
                      +...+..+ ++|+.|++++|.++....    ..++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|
T Consensus       128 l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  203 (319)
T cd00116         128 LAKGLKDLPPALEKLVLGRNRLEGASC----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN  203 (319)
T ss_pred             HHHHHHhCCCCceEEEcCCCcCCchHH----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence            33455667 899999999999763111    13455677888999999999999853    3344566679999999999


Q ss_pred             cCccc----CchhccCCCCCCeeeccCCCCCC
Q 019584          234 RLQGE----FPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       234 ~l~~~----~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      .+++.    ++..+..+++|++|++++|++++
T Consensus       204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         204 GLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             ccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            98754    34456678899999999999886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=2.2e-14  Score=129.82  Aligned_cols=158  Identities=27%  Similarity=0.428  Sum_probs=96.8

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      .+..++..+|++. ..|.  .+.++..|..|++.+|+++.  +|+..-+++.|++||...|-++ .+|+.++.+.+|+-|
T Consensus       138 ~l~dl~~~~N~i~-slp~--~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  138 DLEDLDATNNQIS-SLPE--DMVNLSKLSKLDLEGNKLKA--LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL  211 (565)
T ss_pred             hhhhhhccccccc-cCch--HHHHHHHHHHhhccccchhh--CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence            4567777788876 4555  67778888888888888864  4555555888888888888877 788888888888888


Q ss_pred             EccCCCCCccccccc-----------C---CCcchh-hcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc
Q 019584          173 DLSYSNFDTFYLKLQ-----------K---PGLANL-AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~-----------~---~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  237 (338)
                      +|..|++...+ ++.           .   ..+|.. ..++++|..||+..|+++ +.|+.+..+.+|+.||+|+|.++ 
T Consensus       212 yL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-  288 (565)
T KOG0472|consen  212 YLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-  288 (565)
T ss_pred             HhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-
Confidence            88888864211 000           0   012221 224455555555555554 34555555555555555555555 


Q ss_pred             cCchhccCCCCCCeeeccCCCCC
Q 019584          238 EFPQEIFQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       238 ~~p~~l~~l~~L~~L~l~~N~l~  260 (338)
                      .+|.+++++ .|+.|-+.||++.
T Consensus       289 ~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  289 SLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             cCCcccccc-eeeehhhcCCchH
Confidence            344455555 5555555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.30  E-value=6.2e-11  Score=119.70  Aligned_cols=143  Identities=23%  Similarity=0.368  Sum_probs=76.1

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      +.+.|++++++++. +|.  .+  .++|+.|++++|.++.  +|..+.  .+|++|++++|.++ .+|..+.  .+|+.|
T Consensus       179 ~~~~L~L~~~~Lts-LP~--~I--p~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L  246 (754)
T PRK15370        179 NKTELRLKILGLTT-IPA--CI--PEQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEM  246 (754)
T ss_pred             CceEEEeCCCCcCc-CCc--cc--ccCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEE
Confidence            34566666666652 333  22  2456777777777652  555443  46777777777666 4555442  356666


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc---------------
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG---------------  237 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---------------  237 (338)
                      +|++|+++         .+|..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|++++               
T Consensus       247 ~Ls~N~L~---------~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls  312 (754)
T PRK15370        247 ELSINRIT---------ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQ  312 (754)
T ss_pred             ECcCCccC---------cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccchhhHHHHHhc
Confidence            66666643         2232221  245555555555552 444332  345555555555542               


Q ss_pred             -----cCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          238 -----EFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       238 -----~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                           .+|..+  .++|+.|++++|.+++ +|
T Consensus       313 ~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP  341 (754)
T PRK15370        313 SNSLTALPETL--PPGLKTLEAGENALTS-LP  341 (754)
T ss_pred             CCccccCCccc--cccceeccccCCcccc-CC
Confidence                 233222  2467777777777765 44

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.25  E-value=1.9e-11  Score=123.43  Aligned_cols=145  Identities=21%  Similarity=0.326  Sum_probs=94.8

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|+|++|.++. +|.  .+  ..+|+.|++++|.++.  +|..+.  .+|+.|+|++|.+. .+|..+.  .+|+.
T Consensus       199 ~~L~~L~Ls~N~Lts-LP~--~l--~~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~  266 (754)
T PRK15370        199 EQITTLILDNNELKS-LPE--NL--QGNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRIT-ELPERLP--SALQS  266 (754)
T ss_pred             cCCcEEEecCCCCCc-CCh--hh--ccCCCEEECCCCcccc--CChhhh--ccccEEECcCCccC-cCChhHh--CCCCE
Confidence            468899999999884 444  33  2478888888888763  565443  35777777777776 5665543  35666


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC--------------------CCchhcccCCCCCeeecc
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS--------------------TVPHTLANLSSLRFSSLS  231 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------------~~p~~l~~l~~L~~L~Ls  231 (338)
                      |++++|+++.         +|..+.  ++|+.|++++|+++.                    .+|..+  .++|+.|+++
T Consensus       267 L~Ls~N~L~~---------LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls  333 (754)
T PRK15370        267 LDLFHNKISC---------LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAG  333 (754)
T ss_pred             EECcCCccCc---------cccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceecccc
Confidence            6776666532         222221  245555555555543                    133222  2679999999


Q ss_pred             cccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584          232 GCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       232 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      +|.++ .+|..+.  ++|+.|++++|.++. +|.
T Consensus       334 ~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~  363 (754)
T PRK15370        334 ENALT-SLPASLP--PELQVLDVSKNQITV-LPE  363 (754)
T ss_pred             CCccc-cCChhhc--CcccEEECCCCCCCc-CCh
Confidence            99999 5777664  689999999999984 554

>PLN03210 Resistant to P

Probab=99.23  E-value=6.1e-11  Score=126.52  Aligned_cols=59  Identities=25%  Similarity=0.396  Sum_probs=37.8

Q ss_pred             CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCC
Q 019584          199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGP  258 (338)
Q Consensus       199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  258 (338)
                      ++|++|++++|.....+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence            466777777776666677777777778888887765433566544 45555555555543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.22  E-value=8.3e-11  Score=125.50  Aligned_cols=160  Identities=26%  Similarity=0.243  Sum_probs=100.8

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|+|+++.+. .++.  .+..+++|+.|+|+++..... +|. +..+++|++|+|++|.....+|..+..+++|+.
T Consensus       611 ~~L~~L~L~~s~l~-~L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWD--GVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             cCCcEEECcCcccc-cccc--ccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            46777777777765 3344  556677777777776543222 443 666777777777776555567777777777777


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCC---------------------CCCCEEEccCCCCCCCCchhc-----------
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENL---------------------TNLKALDLINVHISSTVPHTL-----------  219 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l---------------------~~L~~L~Ls~N~l~~~~p~~l-----------  219 (338)
                      |++++|..    +    ..+|..+ ++                     .+|++|++++|.+. .+|..+           
T Consensus       686 L~L~~c~~----L----~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~  755 (1153)
T PLN03210        686 LDMSRCEN----L----EILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILC  755 (1153)
T ss_pred             EeCCCCCC----c----CccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-ccccccccccccccccc
Confidence            77776531    0    1222211 23                     34555555555544 233321           


Q ss_pred             -------------------ccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          220 -------------------ANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       220 -------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                                         ...++|+.|+|++|...+.+|..+.++++|+.|++++|..-+.+|..
T Consensus       756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG  821 (1153)
T ss_pred             ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence                               11246788888888777788999999999999999988655566643

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=2.2e-11  Score=101.48  Aligned_cols=126  Identities=30%  Similarity=0.387  Sum_probs=42.3

Q ss_pred             cccCcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          114 LFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      +.+...++.|+|++|.|+.  + +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++         .+.
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~---------~i~   80 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS---------SIS   80 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS------------S-C
T ss_pred             ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC---------ccc
Confidence            3444556777777777653  2 2344 4567777777777777 443 4666777777777777754         233


Q ss_pred             hhh-cCCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCcccCc----hhccCCCCCCeeec
Q 019584          193 NLA-ENLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQGEFP----QEIFQLPNLQFLGL  254 (338)
Q Consensus       193 ~~~-~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~l  254 (338)
                      ..+ ..+++|++|++++|++... .-..++.+++|++|+|.+|.++.. +    ..+..+|+|+.||-
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            223 3567777777777777542 224566778888888888877732 2    23556778887763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=8.1e-13  Score=124.45  Aligned_cols=134  Identities=25%  Similarity=0.403  Sum_probs=104.9

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+.++..|++|||+.|+++.  +|..+..++ |+.|-+++|+++ .+|+.++.+..|..||.+.|++.         .+|
T Consensus       116 ~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~---------slp  182 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ---------SLP  182 (722)
T ss_pred             hhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh---------hch
Confidence            56677777777777777752  666666554 777777777777 67777777777777888877753         577


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCc
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  262 (338)
                      ..+.++.+|+.|++..|++.. +|+.+..| .|..||++.|+++ .+|-.|.+|+.|++|-|.+|++...
T Consensus       183 sql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  183 SQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            778888888888888888874 67777754 4889999999999 8999999999999999999999863

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.18  E-value=2.4e-12  Score=127.29  Aligned_cols=150  Identities=25%  Similarity=0.273  Sum_probs=88.9

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      .++.|.+.+|.+++...+  .+.++++|+.|+|++|++... ....+.++..|++|+||+|+++ .+|+.+..+..|++|
T Consensus       360 ~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~f-pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNSF-PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             HHHHHHHhcCcccccchh--hhccccceeeeeecccccccC-CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            456666677777666555  666677777777777766532 2234566667777777777777 666767777777777


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      ...+|++.         .+| .+..+++|+.+|++.|+++... |... ..++|++|||++|.-...--+.+..++++..
T Consensus       436 ~ahsN~l~---------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~  504 (1081)
T KOG0618|consen  436 RAHSNQLL---------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQ  504 (1081)
T ss_pred             hhcCCcee---------ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhh
Confidence            77777642         345 5666777777777777765432 2222 2266777777777632222333444444444


Q ss_pred             eeccCC
Q 019584          252 LGLCGG  257 (338)
Q Consensus       252 L~l~~N  257 (338)
                      .++.-|
T Consensus       505 ~~i~~~  510 (1081)
T KOG0618|consen  505 MDITLN  510 (1081)
T ss_pred             eecccC
Confidence            444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.17  E-value=2.4e-12  Score=127.19  Aligned_cols=162  Identities=27%  Similarity=0.330  Sum_probs=86.4

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      +++.+|++.|++.+ +|.  .+..+.+|+.++..+|+++.  +|..+....+|+.|.+.+|.+. .+|.....+++|++|
T Consensus       242 nl~~~dis~n~l~~-lp~--wi~~~~nle~l~~n~N~l~~--lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPE--WIGACANLEALNANHNRLVA--LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             cceeeecchhhhhc-chH--HHHhcccceEecccchhHHh--hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            44444444444442 223  44445555555555555431  3333333333333333334444 455555566777777


Q ss_pred             EccCCCCCcccccc-------------------------------------cC----CCcchhhcCCCCCCEEEccCCCC
Q 019584          173 DLSYSNFDTFYLKL-------------------------------------QK----PGLANLAENLTNLKALDLINVHI  211 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~-------------------------------------~~----~~~~~~~~~l~~L~~L~Ls~N~l  211 (338)
                      +|..|++..++-..                                     ..    ...-+.+.++++|+.|+|++|++
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            77777765431000                                     00    11112345566777777777777


Q ss_pred             CCCCchhcccCCCCCeeecccccCcc----------------------cCchhccCCCCCCeeeccCCCCCC
Q 019584          212 SSTVPHTLANLSSLRFSSLSGCRLQG----------------------EFPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       212 ~~~~p~~l~~l~~L~~L~Ls~N~l~~----------------------~~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      .......+.++..|++|+||+|+++.                      .+| ++.+++.|+.+|++.|.++-
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence            65444555666667777777776651                      244 45667777778888777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=2.9e-11  Score=100.81  Aligned_cols=124  Identities=24%  Similarity=0.276  Sum_probs=53.4

Q ss_pred             CcEEEEEeCCCCceeecCCCCccc-cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhh-cCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLF-QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL-LELSNL  169 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L  169 (338)
                      .++++|+|.+|.|+.. .   .+. .+.+|+.|++++|.++.  + +.+..+++|++|++++|.++ .+++.+ ..+++|
T Consensus        19 ~~~~~L~L~~n~I~~I-e---~L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI-E---NLGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             cccccccccccccccc-c---chhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            3678999999998742 2   344 57899999999999974  3 35788999999999999999 565555 468999


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC---chhcccCCCCCeeec
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV---PHTLANLSSLRFSSL  230 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L  230 (338)
                      ++|++++|++.++       .--..+..+++|++|++.+|.++...   ...+..+|+|+.||-
T Consensus        91 ~~L~L~~N~I~~l-------~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDL-------NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SC-------CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCCh-------HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999999998652       12355678999999999999997531   234567899999884

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=9.5e-12  Score=109.19  Aligned_cols=133  Identities=29%  Similarity=0.314  Sum_probs=109.7

Q ss_pred             CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhc
Q 019584          117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE  196 (338)
Q Consensus       117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~  196 (338)
                      ...|+.+||++|.|+.  +.+++.-.+.++.|++|+|.+. .+. .+..+++|+.||||+|.++         .+-.+-.
T Consensus       283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls---------~~~Gwh~  349 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA---------ECVGWHL  349 (490)
T ss_pred             Hhhhhhccccccchhh--hhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH---------hhhhhHh
Confidence            4578899999999973  7778888899999999999998 443 4888999999999999864         3445556


Q ss_pred             CCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCccc-CchhccCCCCCCeeeccCCCCCCcCC
Q 019584          197 NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE-FPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       197 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      ++.+++.|.|+.|.+..  -..++++-+|.+||+++|++... -...++++|.|+++.+.+|++.+...
T Consensus       350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            78899999999998864  25578889999999999999832 22468899999999999999998544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.11  E-value=1.9e-11  Score=110.72  Aligned_cols=148  Identities=20%  Similarity=0.173  Sum_probs=108.3

Q ss_pred             CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccC-CCCCcccc-------------
Q 019584          119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY-SNFDTFYL-------------  184 (338)
Q Consensus       119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~l-------------  184 (338)
                      ....++|..|.|+.. .+.+|+.+++|+.||||+|.|+..-|++|.++++|..|-+-+ |+|++++-             
T Consensus        68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            456789999999865 778899999999999999999988899999988877766555 88774300             


Q ss_pred             ------------------------------------cc------------------------------------------
Q 019584          185 ------------------------------------KL------------------------------------------  186 (338)
Q Consensus       185 ------------------------------------~~------------------------------------------  186 (338)
                                                          ++                                          
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence                                                00                                          


Q ss_pred             -----------------------------c-----CCCcc-hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecc
Q 019584          187 -----------------------------Q-----KPGLA-NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLS  231 (338)
Q Consensus       187 -----------------------------~-----~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  231 (338)
                                                   .     ....| ..|..+++|+.|++++|+++..-+.+|.....++.|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                                         0     00011 235678899999999999998777777777777777777


Q ss_pred             cccCcccCchhccCCCCCCeeeccCCCCCCcCCCCC
Q 019584          232 GCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSE  267 (338)
Q Consensus       232 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~  267 (338)
                      .|++...-...|..+..|+.|+|++|++++.-|..+
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF  342 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF  342 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence            777764444456667777777777777777655433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.10  E-value=3.6e-10  Score=113.93  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=32.3

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCc
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS  156 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~  156 (338)
                      +++.|++.+|+++. +|.     ..++|++|++++|+++.  +|..   .++|++|++++|.++
T Consensus       223 ~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             CCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCc--ccCc---ccccceeeccCCchh
Confidence            56777777777763 333     24678888888887763  4432   235555555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=6.9e-11  Score=112.25  Aligned_cols=165  Identities=32%  Similarity=0.413  Sum_probs=115.9

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCc-CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLV-HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..++.|++.+|.++. +++  ....+. +|+.|++++|.+..  +|..+..+++|+.|++++|+++ .+|...+.++.|+
T Consensus       116 ~~l~~L~l~~n~i~~-i~~--~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         116 TNLTSLDLDNNNITD-IPP--LIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             cceeEEecCCccccc-Ccc--ccccchhhcccccccccchhh--hhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            367888888888874 333  344453 78888888888763  5666788888888888888888 6776666778888


Q ss_pred             EEEccCCCCCccccc-----------ccC---CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584          171 VLDLSYSNFDTFYLK-----------LQK---PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~-----------~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      .|++++|+++...-.           +..   ...+..+.++.++..+.+.+|++.. ++..++.++++++|++++|.++
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence            888888886542110           000   1233345555666666666666653 3566778888999999999998


Q ss_pred             ccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584          237 GEFPQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       237 ~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                       .++. ++.+.+++.|++++|.+....|.
T Consensus       269 -~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         269 -SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -cccc-ccccCccCEEeccCccccccchh
Confidence             5554 78888999999999988876553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.00  E-value=1e-11  Score=117.10  Aligned_cols=152  Identities=30%  Similarity=0.405  Sum_probs=131.0

Q ss_pred             EEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEE
Q 019584           94 VVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLD  173 (338)
Q Consensus        94 l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  173 (338)
                      .+..||+.|.+. .+|.  .+..+..|+.+.|..|.+.  .+|..+.++..|++|||+.|+++ .+|..++.++ |+.|-
T Consensus        77 t~~aDlsrNR~~-elp~--~~~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPE--EACAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             hhhhhccccccc-cCch--HHHHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            456788888876 5555  6777888888999999885  38899999999999999999999 8999888877 99999


Q ss_pred             ccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeee
Q 019584          174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLG  253 (338)
Q Consensus       174 Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  253 (338)
                      +++|++         ..+|..++.++.|..||.+.|.+.. +|..++.+.+|+.|++..|++. .+|+++..+ .|..||
T Consensus       150 ~sNNkl---------~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lD  217 (722)
T KOG0532|consen  150 VSNNKL---------TSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLD  217 (722)
T ss_pred             EecCcc---------ccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeee
Confidence            999996         3788888899999999999999984 8889999999999999999999 788888866 589999


Q ss_pred             ccCCCCCCcCCC
Q 019584          254 LCGGPLSKKCNN  265 (338)
Q Consensus       254 l~~N~l~~~~p~  265 (338)
                      ++.|+++- +|-
T Consensus       218 fScNkis~-iPv  228 (722)
T KOG0532|consen  218 FSCNKISY-LPV  228 (722)
T ss_pred             cccCceee-cch
Confidence            99999985 563

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=4.1e-10  Score=106.93  Aligned_cols=123  Identities=37%  Similarity=0.501  Sum_probs=92.6

Q ss_pred             EEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCC-CCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584           96 ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFS-RLTHLNLSQSYFSGQIPAELLELSNLEVLDL  174 (338)
Q Consensus        96 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  174 (338)
                      .+++..+.+.....   .+..++.++.|++.+|.++.  ++.....+. +|+.|++++|.+. .+|..+..+++|+.|++
T Consensus        97 ~l~~~~~~~~~~~~---~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRSNIS---ELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccccCch---hhhcccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence            57888887743322   35566889999999999974  777777774 9999999999999 78778999999999999


Q ss_pred             cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584          175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR  234 (338)
Q Consensus       175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  234 (338)
                      ++|+++         .+|......++|+.|++++|++.. +|........|++|++++|.
T Consensus       171 ~~N~l~---------~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         171 SFNDLS---------DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             CCchhh---------hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCc
Confidence            999975         345555577778888888887774 55544444456666666663

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=1.6e-10  Score=101.63  Aligned_cols=128  Identities=27%  Similarity=0.355  Sum_probs=104.8

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      .++++||++|.|+. +..  ++.-.+.++.|+++.|.+..  + ..+..+++|+.||||+|.++ .+...-..+.+.++|
T Consensus       285 ~LtelDLS~N~I~~-iDE--SvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ-IDE--SVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hhhhccccccchhh-hhh--hhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            46789999999873 334  56678999999999999963  3 45889999999999999998 555555678899999


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCcc
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~  237 (338)
                      +|++|.+.+          -..+.++-+|..||+++|++... -...+++++.|+++.|.+|.+.+
T Consensus       358 ~La~N~iE~----------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  358 KLAQNKIET----------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ehhhhhHhh----------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999998643          24567889999999999998642 24668999999999999999984

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2e-10  Score=105.47  Aligned_cols=160  Identities=24%  Similarity=0.230  Sum_probs=76.8

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc-cchhhcCCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ-IPAELLELSNLE  170 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~  170 (338)
                      ++++.|||+.|-+....+-......+++|+.|+|+.|++....-...-..+++|+.|.|+.|.++.. +-..+..+|+|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            5677777777766543322113345677777777777664220111112355666666666666522 111223445566


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCccc-Cchh-----c
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGE-FPQE-----I  243 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l  243 (338)
                      .|+|..|...        ..-......+..|++|||++|++-... -...+.++.|+.|+++.+.++.. +|+.     .
T Consensus       226 ~L~L~~N~~~--------~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  226 VLYLEANEII--------LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT  297 (505)
T ss_pred             Hhhhhccccc--------ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence            6666655311        000111223445566666666554321 12344555555555555555421 1211     2


Q ss_pred             cCCCCCCeeeccCCCC
Q 019584          244 FQLPNLQFLGLCGGPL  259 (338)
Q Consensus       244 ~~l~~L~~L~l~~N~l  259 (338)
                      ..+++|++|++..|++
T Consensus       298 ~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNI  313 (505)
T ss_pred             cccccceeeecccCcc
Confidence            2345555555555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=6.1e-10  Score=102.31  Aligned_cols=163  Identities=24%  Similarity=0.311  Sum_probs=121.5

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .++++.|+|+.|.+.-..... .-..+++|+.|.|+.|.++...+...+..+++|+.|+|..|.....-.....-+..|+
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~-~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSN-TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             cccchhcccccccccCCcccc-chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            579999999999986433221 2236889999999999998766667778899999999999963333333445678899


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC-Cchh-----cccCCCCCeeecccccCcccCc--hh
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST-VPHT-----LANLSSLRFSSLSGCRLQGEFP--QE  242 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~p--~~  242 (338)
                      .|||++|++-++       ..-.....++.|+.|+++.+.+... +|+.     ...+++|++|++..|++. ..+  ..
T Consensus       250 ~LdLs~N~li~~-------~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~  321 (505)
T KOG3207|consen  250 ELDLSNNNLIDF-------DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNH  321 (505)
T ss_pred             hccccCCccccc-------ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccch
Confidence            999999997432       1224567889999999999988753 2332     346789999999999997 333  34


Q ss_pred             ccCCCCCCeeeccCCCCCCc
Q 019584          243 IFQLPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       243 l~~l~~L~~L~l~~N~l~~~  262 (338)
                      +..+++|+.|.+..|+++.+
T Consensus       322 l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  322 LRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhccchhhhhhccccccccc
Confidence            55677888888888888864

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=2.1e-09  Score=73.81  Aligned_cols=60  Identities=35%  Similarity=0.535  Sum_probs=35.8

Q ss_pred             CCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCC
Q 019584          200 NLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPL  259 (338)
Q Consensus       200 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  259 (338)
                      +|++|++++|+++...+..+..+++|++|++++|.++...|..+..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455566666655544445556666666666666666644445566666666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=4.6e-09  Score=72.08  Aligned_cols=59  Identities=32%  Similarity=0.461  Sum_probs=27.1

Q ss_pred             CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCC
Q 019584          119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN  178 (338)
Q Consensus       119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  178 (338)
                      +|++|++++|+++.. .+..+.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            344444444444421 22344445555555555555543333344455555555555443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.72  E-value=9.4e-10  Score=86.17  Aligned_cols=136  Identities=18%  Similarity=0.270  Sum_probs=95.1

Q ss_pred             ccEEEccCCCCCCCCCch---hhhcCCCCcEEEcccccCccccchhhc-CCCCCCEEEccCCCCCcccccccCCCcchhh
Q 019584          120 LQRLSLFDNNFNFSEIPS---AILNFSRLTHLNLSQSYFSGQIPAELL-ELSNLEVLDLSYSNFDTFYLKLQKPGLANLA  195 (338)
Q Consensus       120 L~~L~L~~n~l~~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~  195 (338)
                      +..++|+++.+-.  +++   .+.....|+..+|++|.+. .+|+.|. ..+.++.|++++|.++         .+|..+
T Consensus        29 ~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis---------dvPeE~   96 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS---------DVPEEL   96 (177)
T ss_pred             hhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh---------hchHHH
Confidence            4456666665531  333   3444556667788888888 6666664 4457888888888863         567778


Q ss_pred             cCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584          196 ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       196 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      ..++.|+.|+++.|.+.. .|..+..+.++.+|+..+|.+. ++|..+.--...-..++.++++.+.+|.-...
T Consensus        97 Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa  168 (177)
T KOG4579|consen   97 AAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA  168 (177)
T ss_pred             hhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence            888888888888888874 6777777888899999999887 67765443344455667888999988865443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.60  E-value=2.6e-08  Score=89.41  Aligned_cols=143  Identities=19%  Similarity=0.185  Sum_probs=81.5

Q ss_pred             cccCcCccEEEccCCCCCCCCCch----hhhcCCCCcEEEcccccCcccc-------------chhhcCCCCCCEEEccC
Q 019584          114 LFQLVHLQRLSLFDNNFNFSEIPS----AILNFSRLTHLNLSQSYFSGQI-------------PAELLELSNLEVLDLSY  176 (338)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~Ls~  176 (338)
                      +...++|++|+||+|.+... .+.    -+..+..|++|+|.+|.+.-.-             ......-+.|+++...+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~-g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPK-GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HhcCCceeEeeccccccCcc-chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            34456777888888777543 222    3455677777777777665111             11123346777777777


Q ss_pred             CCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccCccc----CchhccCCCC
Q 019584          177 SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRLQGE----FPQEIFQLPN  248 (338)
Q Consensus       177 N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~  248 (338)
                      |++.....+    .+...+...+.|+.+.+..|.+...    +...+..+++|+.|||.+|-|+..    +...+..+++
T Consensus       167 Nrlen~ga~----~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  167 NRLENGGAT----ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             cccccccHH----HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            775432111    2234455556666666666665422    223455667777777777766532    3344555666


Q ss_pred             CCeeeccCCCCCC
Q 019584          249 LQFLGLCGGPLSK  261 (338)
Q Consensus       249 L~~L~l~~N~l~~  261 (338)
                      |+.++++++.+..
T Consensus       243 L~El~l~dcll~~  255 (382)
T KOG1909|consen  243 LRELNLGDCLLEN  255 (382)
T ss_pred             heeeccccccccc
Confidence            6677666665553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.51  E-value=2e-09  Score=104.57  Aligned_cols=129  Identities=28%  Similarity=0.332  Sum_probs=95.4

Q ss_pred             CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCC
Q 019584          119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL  198 (338)
Q Consensus       119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l  198 (338)
                      .|...+.+.|.+..  +..++.-++.|+.|||++|+++ .+. .+..++.|++|||++|.+.         .+|..-..-
T Consensus       165 ~L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~---------~vp~l~~~g  231 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL--MDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR---------HVPQLSMVG  231 (1096)
T ss_pred             hHhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc---------cccccchhh
Confidence            45666777777752  5667778889999999999998 343 7788899999999999864         333322222


Q ss_pred             CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccC-chhccCCCCCCeeeccCCCCCCc
Q 019584          199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEF-PQEIFQLPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~  262 (338)
                      ..|+.|++.+|.++..  ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.||++.|.
T Consensus       232 c~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  232 CKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            3489999999988743  44778899999999999887531 12345667788999999999885

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.50  E-value=4.8e-08  Score=87.72  Aligned_cols=117  Identities=23%  Similarity=0.299  Sum_probs=59.0

Q ss_pred             hcCCCCcEEEcccccCccc----cchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC
Q 019584          140 LNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV  215 (338)
Q Consensus       140 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  215 (338)
                      ...+.|+.+.++.|.|...    +...+..+++|+.|||.+|-++...    ...+...+..+++|++|++++|.+....
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg----s~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG----SVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH----HHHHHHHhcccchheeeccccccccccc
Confidence            3334455555555444311    1223445566666666666543110    0122344555566666666666665433


Q ss_pred             chhc-----ccCCCCCeeecccccCccc----CchhccCCCCCCeeeccCCCCC
Q 019584          216 PHTL-----ANLSSLRFSSLSGCRLQGE----FPQEIFQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       216 p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~  260 (338)
                      ...+     ...++|+.|.+.+|.++..    +...+...+.|..|+|++|.+.
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            3222     1245666666666666532    2223344566777777777763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.49  E-value=8.2e-09  Score=80.98  Aligned_cols=139  Identities=24%  Similarity=0.283  Sum_probs=96.1

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+..+||+++.+......++.+....+|+..+|++|.+..  +|+.|. .++.++.|+|++|+++ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            4556788888765222222245566778888999998864  566554 4568899999999998 88988999999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhcc
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF  244 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  244 (338)
                      |+++.|.+.         ..|..+..+.+|..|+..+|.+. ++|..+-.-...-..++.++.+.+.-+..+.
T Consensus       105 lNl~~N~l~---------~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  105 LNLRFNPLN---------AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             cccccCccc---------cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            999999863         55677777888888998888876 3554433223333445566667665554433

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.46  E-value=2.6e-07  Score=58.44  Aligned_cols=42  Identities=40%  Similarity=0.936  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEc
Q 019584           38 DRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCN   88 (338)
Q Consensus        38 ~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~   88 (338)
                      ++|++||++||+++..+..        ..+.+|+... ..++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~--------~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS--------GVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC---------CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC--------cccccCCCcC-CCCCeeeccEEeC
Confidence            6899999999999986332        2789998321 2799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.29  E-value=7.7e-07  Score=91.79  Aligned_cols=107  Identities=24%  Similarity=0.244  Sum_probs=73.3

Q ss_pred             CcEEEEEeCCCC--ceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           92 GHVVELDLASSC--LYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        92 ~~l~~L~Ls~n~--l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      +.+++|-+.+|.  +......  .|..++.|+.|||++|.-.+ .+|+.++.+-+|++|+++++.+. .+|..+.++..|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~--ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGE--FFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhhhcCHH--HHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            456677777664  2211111  36668888888888765433 38888888888888888888888 788888888888


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCC
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH  210 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  210 (338)
                      .+||+..+...        ..+|.....+++|++|.+-.-.
T Consensus       621 ~~Lnl~~~~~l--------~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRL--------ESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heecccccccc--------ccccchhhhcccccEEEeeccc
Confidence            88888877531        2345556667888888776543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=2.3e-08  Score=97.31  Aligned_cols=126  Identities=28%  Similarity=0.325  Sum_probs=95.2

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh-hcCCCCCCE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELSNLEV  171 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~  171 (338)
                      .+...+.+.|.+.. ...  ++.-++.|+.|+|+.|+++..   +.+..+++|++|||++|.+. .+|.. ...+ .|+.
T Consensus       165 ~L~~a~fsyN~L~~-mD~--SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~  236 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDE--SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQL  236 (1096)
T ss_pred             hHhhhhcchhhHHh-HHH--HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhh-hhee
Confidence            45667778887763 223  577788999999999999743   47889999999999999998 67652 2233 4999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCc
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      |++++|.+++          -..+.++.+|+.||++.|-+.+.- -..+..+..|+.|+|.+|.+-
T Consensus       237 L~lrnN~l~t----------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  237 LNLRNNALTT----------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeecccHHHh----------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999998643          235778999999999999887531 123456678899999999876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.26  E-value=1.1e-06  Score=90.75  Aligned_cols=148  Identities=24%  Similarity=0.221  Sum_probs=105.9

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC--CCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN--FNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .++.+.+-+|.+....    .-...+.|++|-+..|.  +... ....|..++.|++|||++|.=-+.+|..++.+-+|+
T Consensus       524 ~~rr~s~~~~~~~~~~----~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIA----GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             heeEEEEeccchhhcc----CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            4556666666654221    11234578888888886  4322 344578899999999998876678999999999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc--ccCchhccCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ--GEFPQEIFQLPN  248 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~  248 (338)
                      +|+++++.++         .+|..+.++..|.+||+..+.-...+|.....+.+|++|.+......  ...-..+..+.+
T Consensus       599 yL~L~~t~I~---------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  599 YLDLSDTGIS---------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             cccccCCCcc---------ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence            9999999863         68899999999999999988766566777777999999998766422  222334445555


Q ss_pred             CCeeec
Q 019584          249 LQFLGL  254 (338)
Q Consensus       249 L~~L~l  254 (338)
                      |+.+..
T Consensus       670 L~~ls~  675 (889)
T KOG4658|consen  670 LENLSI  675 (889)
T ss_pred             hhhhee
Confidence            555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.26  E-value=1.9e-07  Score=89.36  Aligned_cols=149  Identities=29%  Similarity=0.318  Sum_probs=100.9

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      .+..+++..|.+.. +..  .+..+.+|+.|++.+|.+..  +...+..+++|++|++++|.|+..  ..+..++.|+.|
T Consensus        73 ~l~~l~l~~n~i~~-~~~--~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILN--HLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHHhhccchhhhhh-hhc--ccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            45556666776653 112  46778888888888888863  333367788888888888888843  235666778888


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      ++++|.++.+          ..+..+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+. . ...+..+..+..
T Consensus       146 ~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~-i~~~~~~~~l~~  212 (414)
T KOG0531|consen  146 NLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-E-IEGLDLLKKLVL  212 (414)
T ss_pred             eeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-c-ccchHHHHHHHH
Confidence            8888886532          233447888888888888875433 2 467788888888888876 2 233444455555


Q ss_pred             eeccCCCCCC
Q 019584          252 LGLCGGPLSK  261 (338)
Q Consensus       252 L~l~~N~l~~  261 (338)
                      +++.+|.++.
T Consensus       213 ~~l~~n~i~~  222 (414)
T KOG0531|consen  213 LSLLDNKISK  222 (414)
T ss_pred             hhccccccee
Confidence            6777776664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=6.6e-08  Score=85.24  Aligned_cols=133  Identities=25%  Similarity=0.279  Sum_probs=89.7

Q ss_pred             CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCC-CCcccccccCCCcchhhcC
Q 019584          119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN-FDTFYLKLQKPGLANLAEN  197 (338)
Q Consensus       119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~l~~~~~~~~~~~~~  197 (338)
                      .|++|||++..++...+-..+..+.+|+.|.|.++++.+.+...+..-.+|+.||++.++ ++.       ....-.+.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-------n~~~ll~~s  258 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-------NALQLLLSS  258 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-------hHHHHHHHh
Confidence            488888888887655455567788888888888888888887788888888888888764 221       123334667


Q ss_pred             CCCCCEEEccCCCCCCCCchh-----------------------------cccCCCCCeeeccccc-CcccCchhccCCC
Q 019584          198 LTNLKALDLINVHISSTVPHT-----------------------------LANLSSLRFSSLSGCR-LQGEFPQEIFQLP  247 (338)
Q Consensus       198 l~~L~~L~Ls~N~l~~~~p~~-----------------------------l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~  247 (338)
                      ++.|.+|+++.+.++.+....                             ...+++|.+|||++|. ++......+.+++
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            777777777777665322110                             1345777777777764 4444445566777


Q ss_pred             CCCeeeccCCC
Q 019584          248 NLQFLGLCGGP  258 (338)
Q Consensus       248 ~L~~L~l~~N~  258 (338)
                      .|++|.++.+.
T Consensus       339 ~L~~lSlsRCY  349 (419)
T KOG2120|consen  339 YLQHLSLSRCY  349 (419)
T ss_pred             hheeeehhhhc
Confidence            77777776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.2e-07  Score=83.53  Aligned_cols=161  Identities=29%  Similarity=0.338  Sum_probs=109.5

Q ss_pred             CcEEEEEeCCCCceee-cCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccccc-Cccc-cchhhcCCCC
Q 019584           92 GHVVELDLASSCLYGS-INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY-FSGQ-IPAELLELSN  168 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~  168 (338)
                      .+++.|||++..|+.. +..  -+..+.+|+.|.+.++++.+. +...+.+-.+|+.|+|+.+. ++.. ..--+.+++.
T Consensus       185 sRlq~lDLS~s~it~stl~~--iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHG--ILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHHH--HHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            4688999999888632 111  355678889999999988765 77778888888888888763 3311 1112466778


Q ss_pred             CCEEEccCCCCCccccc---------------------ccCCCcchhhcCCCCCCEEEccCCC-CCCCCchhcccCCCCC
Q 019584          169 LEVLDLSYSNFDTFYLK---------------------LQKPGLANLAENLTNLKALDLINVH-ISSTVPHTLANLSSLR  226 (338)
Q Consensus       169 L~~L~Ls~N~l~~~~l~---------------------~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~  226 (338)
                      |..|+++.+.+.....+                     ++...+......+++|.+|||++|. ++......+.+++.|+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            88888887765321000                     0011223334578999999999875 4544556677889999


Q ss_pred             eeecccccCcccCchh---ccCCCCCCeeeccCC
Q 019584          227 FSSLSGCRLQGEFPQE---IFQLPNLQFLGLCGG  257 (338)
Q Consensus       227 ~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l~~N  257 (338)
                      +|.++.|..  .+|+.   +...|.|.+||+.+.
T Consensus       342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            999999974  35654   456789999998653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.16  E-value=2e-07  Score=89.16  Aligned_cols=154  Identities=32%  Similarity=0.338  Sum_probs=106.4

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..+++.|++.+|.|.....   .+..+++|++|++++|.|+..   ..+..++.|+.|++++|.++ .+. .+..++.|+
T Consensus        94 ~~~l~~l~l~~n~i~~i~~---~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~  165 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIEN---LLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLIS-DIS-GLESLKSLK  165 (414)
T ss_pred             ccceeeeeccccchhhccc---chhhhhcchheeccccccccc---cchhhccchhhheeccCcch-hcc-CCccchhhh
Confidence            4688999999999985431   267799999999999999753   34677788999999999998 443 455689999


Q ss_pred             EEEccCCCCCcccccccCCCcchh-hcCCCCCCEEEccCCCCCCCCc--------------------hhcccCCC--CCe
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANL-AENLTNLKALDLINVHISSTVP--------------------HTLANLSS--LRF  227 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p--------------------~~l~~l~~--L~~  227 (338)
                      .+++++|.+..         +... ...+.+++.+++++|.+.....                    ..+..+..  |+.
T Consensus       166 ~l~l~~n~i~~---------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~  236 (414)
T KOG0531|consen  166 LLDLSYNRIVD---------IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRE  236 (414)
T ss_pred             cccCCcchhhh---------hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHH
Confidence            99999999753         1111 4667777788888777653110                    00111122  567


Q ss_pred             eecccccCcccCchhccCCCCCCeeeccCCCCCCc
Q 019584          228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       228 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  262 (338)
                      +++++|.+. ..++.+..+.++..+++.+|.+...
T Consensus       237 l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  237 LYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             HhcccCccc-cccccccccccccccchhhcccccc
Confidence            777777776 4445566667777777777766653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=7.8e-07  Score=78.58  Aligned_cols=171  Identities=20%  Similarity=0.178  Sum_probs=111.6

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc-cchhhcCCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ-IPAELLELSNLE  170 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~  170 (338)
                      .+|+++||.+|.|++...-...+.+++.|++|+++.|.+... +-..-..+.+|++|-|.+..+.-. ....+..+|.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            578999999999986532222566899999999999998643 322114567899999988877633 334457788888


Q ss_pred             EEEccCCCCCccccccc-------------CCCcc--------hhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCee
Q 019584          171 VLDLSYSNFDTFYLKLQ-------------KPGLA--------NLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFS  228 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~-------------~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  228 (338)
                      .|.++.|++..+...-.             ....+        ..-.-++++..+-+..|.+...- -.....++.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            88888885432211100             00000        01123467777777777664321 2334456777789


Q ss_pred             ecccccCccc-CchhccCCCCCCeeeccCCCCCCcC
Q 019584          229 SLSGCRLQGE-FPQEIFQLPNLQFLGLCGGPLSKKC  263 (338)
Q Consensus       229 ~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~  263 (338)
                      +|+.|++... --.++..+++|..|.+++|++....
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            9999998742 2246788999999999999988654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=5e-06  Score=52.75  Aligned_cols=35  Identities=40%  Similarity=0.621  Sum_probs=16.6

Q ss_pred             CCcEEEcccccCccccchhhcCCCCCCEEEccCCCC
Q 019584          144 RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNF  179 (338)
Q Consensus       144 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  179 (338)
                      +|++|++++|+|+ .+|..+..+++|++|++++|++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            4455555555555 3444455555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=6.9e-06  Score=52.09  Aligned_cols=37  Identities=38%  Similarity=0.533  Sum_probs=23.7

Q ss_pred             CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584          199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      ++|++|++++|+++. +|+.++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            356777777777763 5556677777777777777766

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=7e-06  Score=71.82  Aligned_cols=143  Identities=24%  Similarity=0.218  Sum_probs=67.7

Q ss_pred             cccCcCccEEEccCCCCCCCCCchh----hhcCCCCcEEEcccccCcc----ccchh---------hcCCCCCCEEEccC
Q 019584          114 LFQLVHLQRLSLFDNNFNFSEIPSA----ILNFSRLTHLNLSQSYFSG----QIPAE---------LLELSNLEVLDLSY  176 (338)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~~p~~----l~~l~~L~~L~Ls~n~l~~----~~p~~---------l~~l~~L~~L~Ls~  176 (338)
                      +.++++|+..+||+|.+... .|+.    +++-+.|++|.|++|.+.-    .+...         ..+-|.|++.....
T Consensus        88 Llkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            34455566666666655433 3332    2334555666666555431    11111         11234555555555


Q ss_pred             CCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-----hhcccCCCCCeeecccccCccc----CchhccCCC
Q 019584          177 SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-----HTLANLSSLRFSSLSGCRLQGE----FPQEIFQLP  247 (338)
Q Consensus       177 N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-----~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~  247 (338)
                      |++......    .....+....+|+++.+..|.|.-...     ..+..+.+|+.|||.+|.++-.    +...+..++
T Consensus       167 NRlengs~~----~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         167 NRLENGSKE----LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             chhccCcHH----HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence            554221000    001122233456666666665542211     1223456777777777776632    223445566


Q ss_pred             CCCeeeccCCCCCC
Q 019584          248 NLQFLGLCGGPLSK  261 (338)
Q Consensus       248 ~L~~L~l~~N~l~~  261 (338)
                      .|+.|.+.++-++.
T Consensus       243 ~lrEL~lnDClls~  256 (388)
T COG5238         243 LLRELRLNDCLLSN  256 (388)
T ss_pred             hhhhccccchhhcc
Confidence            66777776665554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.88  E-value=2.1e-05  Score=65.99  Aligned_cols=107  Identities=20%  Similarity=0.204  Sum_probs=67.8

Q ss_pred             cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584          118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN  197 (338)
Q Consensus       118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~  197 (338)
                      .....+||++|.+..   ...+..++.|.+|.+++|+|+..-|.--.-+++|..|.|.+|++..+      +. -+.+..
T Consensus        42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l------~d-l~pLa~  111 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL------GD-LDPLAS  111 (233)
T ss_pred             cccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh------hh-cchhcc
Confidence            455667888887642   23466778888888888888844343334457788888888887542      11 123456


Q ss_pred             CCCCCEEEccCCCCCCCC---chhcccCCCCCeeeccccc
Q 019584          198 LTNLKALDLINVHISSTV---PHTLANLSSLRFSSLSGCR  234 (338)
Q Consensus       198 l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~N~  234 (338)
                      +|.|++|.+-+|.+...-   -..+..+++|+.||..+-.
T Consensus       112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            777788877777765321   1234566777877776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.87  E-value=4.1e-06  Score=84.41  Aligned_cols=58  Identities=24%  Similarity=0.415  Sum_probs=26.0

Q ss_pred             CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccC
Q 019584          117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY  176 (338)
Q Consensus       117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  176 (338)
                      +|.|+.|.+.+-.+...++.....++++|..||+|+++++ .+ ..++.+++|+.|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccC
Confidence            4555555555444432222233334455555555555544 22 3444455555544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=1.1e-05  Score=81.29  Aligned_cols=136  Identities=25%  Similarity=0.301  Sum_probs=93.0

Q ss_pred             cCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCcc-ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhh
Q 019584          118 VHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSG-QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA  195 (338)
Q Consensus       118 ~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~  195 (338)
                      .+|+.|++++...-...-|..++ .+|+|+.|.+++-.+.. .+-....++++|..||+|+.+++.         + ..+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---------l-~GI  191 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN---------L-SGI  191 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC---------c-HHH
Confidence            47888888876543222344444 47889999988876652 223344678899999999988642         2 567


Q ss_pred             cCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccC--ch----hccCCCCCCeeeccCCCCCCcC
Q 019584          196 ENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEF--PQ----EIFQLPNLQFLGLCGGPLSKKC  263 (338)
Q Consensus       196 ~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~----~l~~l~~L~~L~l~~N~l~~~~  263 (338)
                      +++++|+.|.+.+=.+.. ..-..+.+|++|+.||+|........  ..    .-..+|+|+.||.+++.+....
T Consensus       192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            888888888887766653 23345678999999999987765321  11    1234789999999988877654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.80  E-value=3.6e-05  Score=64.61  Aligned_cols=108  Identities=22%  Similarity=0.174  Sum_probs=80.3

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccc--hhhcCCCCCC
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIP--AELLELSNLE  170 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~  170 (338)
                      +...+||++|.+....    .+..++.|.+|.+++|+|+.. -|.--..+++|+.|.|.+|.+. .+.  ..+..++.|+
T Consensus        43 ~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhcc----cCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence            5678999999986432    567789999999999999864 4554455788999999999987 332  2356789999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI  211 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  211 (338)
                      +|.+-+|..++.  .   .-=--.+..+|+|+.||...-..
T Consensus       117 ~Ltll~Npv~~k--~---~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  117 YLTLLGNPVEHK--K---NYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eeeecCCchhcc--c---CceeEEEEecCcceEeehhhhhH
Confidence            999999986531  0   11123467899999999876443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=0.00012  Score=68.83  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccc-cCccccchhhcCCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS-YFSGQIPAELLELSNLE  170 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~  170 (338)
                      .+++.|++++|.+.. +|.     --.+|+.|.++++.--. .+|..+.  .+|++|++++| .+. .+|.      +|+
T Consensus        52 ~~l~~L~Is~c~L~s-LP~-----LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe  115 (426)
T PRK15386         52 RASGRLYIKDCDIES-LPV-----LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR  115 (426)
T ss_pred             cCCCEEEeCCCCCcc-cCC-----CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence            467789999887763 222     12358889988744322 2565442  57899999888 444 4553      467


Q ss_pred             EEEccCCCC
Q 019584          171 VLDLSYSNF  179 (338)
Q Consensus       171 ~L~Ls~N~l  179 (338)
                      .|+++.+..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            777776653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.66  E-value=0.0002  Score=67.37  Aligned_cols=119  Identities=23%  Similarity=0.340  Sum_probs=75.8

Q ss_pred             cccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCC-CCCcccccccCCCcc
Q 019584          114 LFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYS-NFDTFYLKLQKPGLA  192 (338)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~l~~~~~~~~  192 (338)
                      +..+.+++.|++++|.++.  +|.   -..+|++|+++++.--..+|+.+  .++|++|++++| .+.         .+|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~---------sLP  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS---------GLP  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc---------ccc
Confidence            3446889999999998863  662   23479999999854333677655  368999999998 432         233


Q ss_pred             hhhcCCCCCCEEEccCCCCC--CCCchhcccC------------------CCCCeeecccccCcccCchhccCCCCCCee
Q 019584          193 NLAENLTNLKALDLINVHIS--STVPHTLANL------------------SSLRFSSLSGCRLQGEFPQEIFQLPNLQFL  252 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  252 (338)
                            .+|+.|++..+...  +.+|..+..|                  ++|++|++++|... ..|..+.  .+|+.|
T Consensus       112 ------~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L  182 (426)
T PRK15386        112 ------ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI  182 (426)
T ss_pred             ------cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence                  23555555554321  2344443322                  46888888888765 4454333  478888


Q ss_pred             eccCC
Q 019584          253 GLCGG  257 (338)
Q Consensus       253 ~l~~N  257 (338)
                      +++.|
T Consensus       183 ~ls~n  187 (426)
T PRK15386        183 TLHIE  187 (426)
T ss_pred             Eeccc
Confidence            88766

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=6.9e-05  Score=66.55  Aligned_cols=165  Identities=19%  Similarity=0.226  Sum_probs=110.2

Q ss_pred             cccceeEEc-CCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc
Q 019584           80 CSWDGVKCN-EDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ  158 (338)
Q Consensus        80 c~w~gv~c~-~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~  158 (338)
                      ..|..+.|. ...++++.|+|+.|.+...+..  .-..+.+|+.|-|.+..+........+..++.++.|.+|.|.+...
T Consensus        84 SdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~  161 (418)
T KOG2982|consen   84 SDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL  161 (418)
T ss_pred             ccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh
Confidence            457777664 3468999999999999865544  2146789999999999987765667778889999999998844311


Q ss_pred             c--chhhc---------------------------CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCC
Q 019584          159 I--PAELL---------------------------ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINV  209 (338)
Q Consensus       159 ~--p~~l~---------------------------~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N  209 (338)
                      .  .+...                           -.+++..+-+..|.+.+       ..--.....++.+.-|+|+.|
T Consensus       162 n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~-------~s~ek~se~~p~~~~LnL~~~  234 (418)
T KOG2982|consen  162 NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT-------ESSEKGSEPFPSLSCLNLGAN  234 (418)
T ss_pred             ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc-------hhhcccCCCCCcchhhhhccc
Confidence            0  00000                           13455555555554432       111234456677788999999


Q ss_pred             CCCCC-CchhcccCCCCCeeecccccCcccCch------hccCCCCCCeee
Q 019584          210 HISST-VPHTLANLSSLRFSSLSGCRLQGEFPQ------EIFQLPNLQFLG  253 (338)
Q Consensus       210 ~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~  253 (338)
                      ++..- -.+.+..++.|..|.+++|.+...+-.      -++.+++++.|+
T Consensus       235 ~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  235 NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            88642 235677889999999999987754322      245677777765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.42  E-value=7.8e-05  Score=64.95  Aligned_cols=38  Identities=32%  Similarity=0.425  Sum_probs=16.2

Q ss_pred             CCCCcEEEcccc--cCccccchhhcCCCCCCEEEccCCCC
Q 019584          142 FSRLTHLNLSQS--YFSGQIPAELLELSNLEVLDLSYSNF  179 (338)
Q Consensus       142 l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l  179 (338)
                      +++|++|.++.|  .+.+.++.....+++|++|++++|++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            444444444444  33333332233334444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.39  E-value=8.2e-05  Score=64.82  Aligned_cols=106  Identities=27%  Similarity=0.356  Sum_probs=73.6

Q ss_pred             hhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchh
Q 019584          139 ILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHT  218 (338)
Q Consensus       139 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  218 (338)
                      ...+..|+.|++.+..++ ++ ..+-.|++|++|.++.|.+.   ..   +.++.....+++|++|++++|++..  +..
T Consensus        39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~---~~---~~l~vl~e~~P~l~~l~ls~Nki~~--lst  108 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRR---VS---GGLEVLAEKAPNLKVLNLSGNKIKD--LST  108 (260)
T ss_pred             cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCccc---cc---ccceehhhhCCceeEEeecCCcccc--ccc
Confidence            344566777777777776 22 24567889999999999543   22   4555566677999999999999873  333


Q ss_pred             ---cccCCCCCeeecccccCcccCc---hhccCCCCCCeeec
Q 019584          219 ---LANLSSLRFSSLSGCRLQGEFP---QEIFQLPNLQFLGL  254 (338)
Q Consensus       219 ---l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~l  254 (338)
                         +..+.+|..|++.+|..+..--   ..+.-+++|++||-
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence               4567788999999998775211   23444677777763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.29  E-value=0.00025  Score=62.30  Aligned_cols=168  Identities=17%  Similarity=0.106  Sum_probs=106.8

Q ss_pred             CcEEEEEeCCCCceeecCCC--CccccCcCccEEEccCCCCCC---CCCchhh---------hcCCCCcEEEcccccCcc
Q 019584           92 GHVVELDLASSCLYGSINST--SSLFQLVHLQRLSLFDNNFNF---SEIPSAI---------LNFSRLTHLNLSQSYFSG  157 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~L~~n~l~~---~~~p~~l---------~~l~~L~~L~Ls~n~l~~  157 (338)
                      ++++.++||+|.+....+..  ..++.-..|.+|.+++|.+..   ..+-..+         ..-+.|+++....|++. 
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-  170 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-  170 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence            58899999999887665541  134566889999999998742   1122222         23467899999999886 


Q ss_pred             ccchh-----hcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCee
Q 019584          158 QIPAE-----LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFS  228 (338)
Q Consensus       158 ~~p~~-----l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L  228 (338)
                      ..|..     +..-..|+++.+..|.|..-..+   ..+-..+..+.+|+.||+..|.++-.    +...+..++.|+.|
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~---~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVT---MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhH---HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            33322     22335788888888876521111   01112345678889999999888743    23444556778888


Q ss_pred             ecccccCcccCchhc------cCCCCCCeeeccCCCCCCcC
Q 019584          229 SLSGCRLQGEFPQEI------FQLPNLQFLGLCGGPLSKKC  263 (338)
Q Consensus       229 ~Ls~N~l~~~~p~~l------~~l~~L~~L~l~~N~l~~~~  263 (338)
                      .+.+|-++.....++      ...++|..|....|...+.+
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence            888888775433322      13567777777777666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=8.1e-05  Score=65.49  Aligned_cols=103  Identities=22%  Similarity=0.131  Sum_probs=64.3

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccch--hhcCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPA--ELLELSNL  169 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L  169 (338)
                      .+++.|+.-|++|.+..    ...+++.|+.|.|+-|+|+.   -..+..+++|++|+|..|.|. .+.+  .+.++++|
T Consensus        19 ~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsL   90 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL   90 (388)
T ss_pred             HHhhhhcccCCCccHHH----HHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence            35667777777776432    44567888888888888763   234777888888888888777 3332  35677888


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEE
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALD  205 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~  205 (338)
                      +.|-|..|...+-.-.   .--...+..+|+|+.||
T Consensus        91 r~LWL~ENPCc~~ag~---nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQ---NYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccch---hHHHHHHHHcccchhcc
Confidence            8888887764320000   00012455667777665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.00011  Score=64.78  Aligned_cols=102  Identities=21%  Similarity=0.208  Sum_probs=78.6

Q ss_pred             cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhh
Q 019584          116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA  195 (338)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~  195 (338)
                      .+.+.+.|+.-++.+++.   ....+++.|+.|.||-|+|+. + ..+..+++|++|.|..|.|.++       .--..+
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sl-------dEL~YL   84 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESL-------DELEYL   84 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccH-------HHHHHH
Confidence            466778899999998753   456789999999999999984 3 3477889999999999997542       112456


Q ss_pred             cCCCCCCEEEccCCCCCCCCch-----hcccCCCCCeee
Q 019584          196 ENLTNLKALDLINVHISSTVPH-----TLANLSSLRFSS  229 (338)
Q Consensus       196 ~~l~~L~~L~Ls~N~l~~~~p~-----~l~~l~~L~~L~  229 (338)
                      .++++|+.|.|..|.-.+.-+.     .+.-+++|+.||
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7899999999999988776543     345677887776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.25  E-value=0.0097  Score=46.64  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .|.++.+|+.+.+.. .+... -...+.++++|+.+.+.++ +...-...+..+++|+.+.+.++- ..        .-.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~-~~--------i~~   74 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNL-KS--------IGD   74 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT--E--------E-T
T ss_pred             HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccccc-cc--------ccc
Confidence            344455555555543 22211 2233555555666665553 432222344555556666664421 10        111


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccc
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG  232 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  232 (338)
                      ..+..+++|+.+++..+ +.......+.+. +|+.+.+..
T Consensus        75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            23444555666665443 332223334444 555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.75  E-value=0.05  Score=42.51  Aligned_cols=117  Identities=13%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.+.+.. .+......  .+..+++|+.+.+.++ +... -...+.++++|+.+.+.+ .+...-...+..+++|+.
T Consensus        12 ~~l~~i~~~~-~~~~I~~~--~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGEN--AFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT--EEEETS-T--EE-TT--TTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCEEEECC-CeeEeChh--hccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccccccccccc
Confidence            3688888875 45544444  7888889999999886 5432 334677888899999976 444233446677899999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCC
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL  225 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  225 (338)
                      +++..+ ++.        .-...+.+. +|+.+.+.. .+.......|.++++|
T Consensus        86 i~~~~~-~~~--------i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   86 IDIPSN-ITE--------IGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEETTT--BE--------EHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccCcc-ccE--------EchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            999766 321        123456666 889988876 3443344556655554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.69  E-value=0.0048  Score=32.63  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=10.9

Q ss_pred             CcEEEcccccCccccchhhc
Q 019584          145 LTHLNLSQSYFSGQIPAELL  164 (338)
Q Consensus       145 L~~L~Ls~n~l~~~~p~~l~  164 (338)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666666 5555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.0061  Score=32.22  Aligned_cols=18  Identities=33%  Similarity=0.619  Sum_probs=9.3

Q ss_pred             CCeeecccccCcccCchhc
Q 019584          225 LRFSSLSGCRLQGEFPQEI  243 (338)
Q Consensus       225 L~~L~Ls~N~l~~~~p~~l  243 (338)
                      |++|||++|+++ .+|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.37  E-value=0.00025  Score=68.63  Aligned_cols=61  Identities=25%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             CCEEEccCCCCCCC----CchhcccC-CCCCeeecccccCcccC----chhccCCCCCCeeeccCCCCCC
Q 019584          201 LKALDLINVHISST----VPHTLANL-SSLRFSSLSGCRLQGEF----PQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       201 L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      +..|++..|.+.+.    ..+.+..+ ..++.++++.|.++..-    .+.+...+.++.+.+++|++..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            44456666655432    12223333 45667777777766432    2334455567777777776664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.29  E-value=0.056  Score=26.53  Aligned_cols=10  Identities=40%  Similarity=0.524  Sum_probs=3.1

Q ss_pred             CcEEEccccc
Q 019584          145 LTHLNLSQSY  154 (338)
Q Consensus       145 L~~L~Ls~n~  154 (338)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.19  E-value=0.0033  Score=54.24  Aligned_cols=84  Identities=21%  Similarity=0.209  Sum_probs=69.1

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..+++.||++.|++... ..  .+..++.|..|+++.|.+..  .|..++++..+..+++.+|..+ ..|.++...+.++
T Consensus        41 ~kr~tvld~~s~r~vn~-~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNL-GK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             cceeeeehhhhhHHHhh-cc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            35789999999987632 23  56678888999999998863  7888888888999999888888 8899999999999


Q ss_pred             EEEccCCCCC
Q 019584          171 VLDLSYSNFD  180 (338)
Q Consensus       171 ~L~Ls~N~l~  180 (338)
                      ++++-.|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            9999888754

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.36  E-value=0.0076  Score=58.52  Aligned_cols=167  Identities=25%  Similarity=0.235  Sum_probs=111.5

Q ss_pred             EEEEEeCCCCceeecCC--CCccccCcCccEEEccCCCCCCCCCc---hhhhcC-CCCcEEEcccccCccc----cchhh
Q 019584           94 VVELDLASSCLYGSINS--TSSLFQLVHLQRLSLFDNNFNFSEIP---SAILNF-SRLTHLNLSQSYFSGQ----IPAEL  163 (338)
Q Consensus        94 l~~L~Ls~n~l~~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~p---~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l  163 (338)
                      +..++|.+|.+......  ...+...++|+.|++++|.+.+....   ..+... ..+++|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            67788999988654221  01455688999999999998743111   122222 4677888888888743    45556


Q ss_pred             cCCCCCCEEEccCCCCCcccccccCCCcchhhc----CCCCCCEEEccCCCCCCCC----chhcccCCC-CCeeeccccc
Q 019584          164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE----NLTNLKALDLINVHISSTV----PHTLANLSS-LRFSSLSGCR  234 (338)
Q Consensus       164 ~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~----~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~-L~~L~Ls~N~  234 (338)
                      .....++.+|++.|.+.....    ..++..+.    ...++++|.+.+|.++...    ...+...+. +..|++..|.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~----~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGL----LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             hcccchhHHHHHhcccchhhh----HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            667899999999998743211    12233333    5789999999999987421    123344455 7779999999


Q ss_pred             Cccc----CchhccCC-CCCCeeeccCCCCCCcCC
Q 019584          235 LQGE----FPQEIFQL-PNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       235 l~~~----~p~~l~~l-~~L~~L~l~~N~l~~~~p  264 (338)
                      +.+.    ..+.+..+ ..+++++++.|.++..-.
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~  279 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV  279 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence            8854    22334445 678999999999987533

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.65  E-value=0.0057  Score=52.81  Aligned_cols=88  Identities=19%  Similarity=0.158  Sum_probs=67.2

Q ss_pred             hhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCch
Q 019584          138 AILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPH  217 (338)
Q Consensus       138 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  217 (338)
                      .+..+...+.||++.|++. .+-..++-++.|..||++.|.+.         .+|..+.....+..+++..|..+ ..|.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~---------~~~~d~~q~~e~~~~~~~~n~~~-~~p~  105 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK---------FLPKDAKQQRETVNAASHKNNHS-QQPK  105 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh---------hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence            4556778888898888877 55566777788888888888753         45666667777777888777776 4788


Q ss_pred             hcccCCCCCeeecccccCc
Q 019584          218 TLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       218 ~l~~l~~L~~L~Ls~N~l~  236 (338)
                      +++..+.++++++-+|.++
T Consensus       106 s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccccCCcchhhhccCcch
Confidence            8888888888888888766

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.10  E-value=0.3  Score=26.63  Aligned_cols=14  Identities=36%  Similarity=0.510  Sum_probs=6.9

Q ss_pred             CCCcEEEcccccCc
Q 019584          143 SRLTHLNLSQSYFS  156 (338)
Q Consensus       143 ~~L~~L~Ls~n~l~  156 (338)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.10  E-value=0.3  Score=26.63  Aligned_cols=14  Identities=36%  Similarity=0.510  Sum_probs=6.9

Q ss_pred             CCCcEEEcccccCc
Q 019584          143 SRLTHLNLSQSYFS  156 (338)
Q Consensus       143 ~~L~~L~Ls~n~l~  156 (338)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.89  E-value=0.29  Score=26.67  Aligned_cols=14  Identities=36%  Similarity=0.358  Sum_probs=7.7

Q ss_pred             CCCCeeecccccCc
Q 019584          223 SSLRFSSLSGCRLQ  236 (338)
Q Consensus       223 ~~L~~L~Ls~N~l~  236 (338)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.89  E-value=0.29  Score=26.67  Aligned_cols=14  Identities=36%  Similarity=0.358  Sum_probs=7.7

Q ss_pred             CCCCeeecccccCc
Q 019584          223 SSLRFSSLSGCRLQ  236 (338)
Q Consensus       223 ~~L~~L~Ls~N~l~  236 (338)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.69  E-value=0.066  Score=51.75  Aligned_cols=91  Identities=26%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             cccCcCccEEEccCC-C-CCCC--CCchhhhcCCCCcEEEccccc-Cccccchhhc-CCCCCCEEEccCCC-CCcccccc
Q 019584          114 LFQLVHLQRLSLFDN-N-FNFS--EIPSAILNFSRLTHLNLSQSY-FSGQIPAELL-ELSNLEVLDLSYSN-FDTFYLKL  186 (338)
Q Consensus       114 l~~l~~L~~L~L~~n-~-l~~~--~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~~l~~  186 (338)
                      ....+.|+.|+++++ . ....  ........+++|+.|+++.+. ++...-..+. .+++|++|.+.++. +++     
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~-----  284 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTD-----  284 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccch-----
Confidence            445677777777652 1 1110  012233445677777777766 4433223332 25677777766554 332     


Q ss_pred             cCCCcchhhcCCCCCCEEEccCCCC
Q 019584          187 QKPGLANLAENLTNLKALDLINVHI  211 (338)
Q Consensus       187 ~~~~~~~~~~~l~~L~~L~Ls~N~l  211 (338)
                        ..+-.....+++|++|+++.+..
T Consensus       285 --~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  285 --EGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             --hHHHHHHHhcCcccEEeeecCcc
Confidence              23344455667777777776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.07  E-value=0.2  Score=48.43  Aligned_cols=131  Identities=29%  Similarity=0.301  Sum_probs=70.0

Q ss_pred             CcCccEEEccCCCC-CCCCCchhhhcCCCCcEEEcccc-cCccccc----hhhcCCCCCCEEEccCCC-CCcccccccCC
Q 019584          117 LVHLQRLSLFDNNF-NFSEIPSAILNFSRLTHLNLSQS-YFSGQIP----AELLELSNLEVLDLSYSN-FDTFYLKLQKP  189 (338)
Q Consensus       117 l~~L~~L~L~~n~l-~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~N~-l~~~~l~~~~~  189 (338)
                      .+.|+.|.+.++.- +...+-.....+++|+.|+++++ ......+    .....+.+|+.|++++.. +++.       
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~-------  259 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI-------  259 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-------
Confidence            56777777776642 21112234556778888888763 1111111    122445777888888776 4331       


Q ss_pred             CcchhhcCCCCCCEEEccCCC-CCCCC-chhcccCCCCCeeecccccCccc--CchhccCCCCCCeeec
Q 019584          190 GLANLAENLTNLKALDLINVH-ISSTV-PHTLANLSSLRFSSLSGCRLQGE--FPQEIFQLPNLQFLGL  254 (338)
Q Consensus       190 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~l  254 (338)
                      .+......+++|++|.+.++. +++.. -.....++.|++|+++++.....  +......+++++.+.+
T Consensus       260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            222233346788888877666 44432 22234567788888887764311  2222334555555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.01  E-value=0.083  Score=28.32  Aligned_cols=17  Identities=24%  Similarity=0.188  Sum_probs=8.2

Q ss_pred             CCCCeeecccccCcccC
Q 019584          223 SSLRFSSLSGCRLQGEF  239 (338)
Q Consensus       223 ~~L~~L~Ls~N~l~~~~  239 (338)
                      ++|++|+|++|++++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            45556666666655443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.38  E-value=0.082  Score=44.79  Aligned_cols=83  Identities=22%  Similarity=0.228  Sum_probs=40.3

Q ss_pred             CCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCC-CCCCCchhcccC
Q 019584          144 RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH-ISSTVPHTLANL  222 (338)
Q Consensus       144 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l  222 (338)
                      .++.+|-++..|...--+.+.++++++.|.+.++.-    +.  ...+...-.-.++|+.|++++|. |+..--..+..+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~----~d--D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY----FD--DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccc----hh--hHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence            355666666666654444555566666666655531    00  00000011123556666666543 444444455555


Q ss_pred             CCCCeeeccc
Q 019584          223 SSLRFSSLSG  232 (338)
Q Consensus       223 ~~L~~L~Ls~  232 (338)
                      ++|+.|.+.+
T Consensus       176 knLr~L~l~~  185 (221)
T KOG3864|consen  176 KNLRRLHLYD  185 (221)
T ss_pred             hhhHHHHhcC
Confidence            6666655543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.45  E-value=0.16  Score=43.02  Aligned_cols=35  Identities=20%  Similarity=0.183  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN  129 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  129 (338)
                      .|+.+|-++..|...--.  .+.+++.++.|.+.++.
T Consensus       102 ~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHH--HHhccchhhhheecccc
Confidence            456666666666544333  44555555555555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=82.51  E-value=0.68  Score=43.58  Aligned_cols=137  Identities=23%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             cCcCccEEEccCCCCCCCCCchhh-hcCCCCcEEEccccc-Cccccchhh-cCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          116 QLVHLQRLSLFDNNFNFSEIPSAI-LNFSRLTHLNLSQSY-FSGQIPAEL-LELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+..|+.|+.+++.......-..+ .+..+|+.|.++.++ |+..--..+ .+.+.|+.+++......   ..   +.+.
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~---~d---~tL~  365 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI---TD---GTLA  365 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee---hh---hhHh
Confidence            356667777776543211111222 345677777777765 221111122 34567777777766532   11   2333


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCC-----chhcccCCCCCeeecccccCcc-cCchhccCCCCCCeeeccCCC
Q 019584          193 NLAENLTNLKALDLINVHISSTV-----PHTLANLSSLRFSSLSGCRLQG-EFPQEIFQLPNLQFLGLCGGP  258 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~l~~N~  258 (338)
                      ..-.+++.|+.|.++++......     ...-..+..|+.+.|+++.... ..-+.+..+++|+.+++.+..
T Consensus       366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            44456778888888877543211     1111234567778887776542 223345566777777776553

>TIGR00864 PCC polycystin cation channel protein

Probab=80.46  E-value=1.1  Score=51.55  Aligned_cols=32  Identities=34%  Similarity=0.342  Sum_probs=18.7

Q ss_pred             EccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584          205 DLINVHISSTVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       205 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      ||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~   32 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE   32 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence            45566666544555555666666666666554

Note: this model has been restricted to the amino half because for technical reasons.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-08
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-05

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 35  LCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCC--SWDGVKCNEDTG 92
           LC+ +++ ALL  K+ L    T SS          W P     DCC  +W GV C+ DT 
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTTLSS----------WLP---TTDCCNRTWLGVLCDTDTQ 48
Query: 93  --HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNL 150
              V  LDL+   L       SSL  L +L  L +   N     IP AI   ++L +L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 151 SQSYFSGQIPAXXXXXXXXXXXXXSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH 210
           + +  SG IP              SY+           P +++L     NL  +      
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL----PPSISSLP----NLVGITFDGNR 160
Query: 211 ISSTVPHTLANLSSLRFS-SLSGCRLQGEFPQEIFQLPNLQFLGL 254
           IS  +P +  + S L  S ++S  RL G+ P     L NL F+ L
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 9/164 (5%)
Query: 91  TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNL 150
           +  ++ LDL+S+   G I           LQ L L +N F   +IP  + N S L  L+L
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELVSLHL 422
Query: 151 SQSYFSGQIPAXXXXXXXXXXXXXSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH 210
           S +Y SG IP+                     +L + +  +      +  L+ L L    
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDL--------KLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 211 ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           ++  +P  L+N ++L + SLS  RL GE P+ I +L NL  L L
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 9/164 (5%)
Query: 91  TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNL 150
           +  ++ LDL+S+   G I           LQ L L +N F   +IP  + N S L  L+L
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELVSLHL 425
Query: 151 SQSYFSGQIPAXXXXXXXXXXXXXSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH 210
           S +Y SG IP+                     +L + +  +      +  L+ L L    
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDL--------KLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 211 ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           ++  +P  L+N ++L + SLS  RL GE P+ I +L NL  L L
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (366), Expect = 1e-38
 Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 79/279 (28%)

Query: 29  ISSTQPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCN 88
             ++      RE   L++FK+ L                  W  ++   + C++DGV C 
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDKNLLPD----------WSSNK---NPCTFDGVTC- 47

Query: 89  EDTGHVVE--------------------------------------------------LD 98
                V                                                    LD
Sbjct: 48  -RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106

Query: 99  LASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ 158
           L+ + L G + + +SL     L+ L++  N  +F    S  L  + L  L+LS +  SG 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 159 IPAELLE---LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
                +       L+ L +S +            G  +++    NL+ LD+ + + S+ +
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKIS---------GDVDVS-RCVNLEFLDVSSNNFSTGI 216

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           P  L + S+L+   +SG +L G+F + I     L+ L +
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (282), Expect = 2e-27
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 22/178 (12%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            +  L ++ + + G +     + + V+L+ L +  NNF+ + IP  + + S L HL++S 
Sbjct: 179 ELKHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFS-TGIPF-LGDCSALQHLDISG 232

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFD----TFYL-KLQKPGLAN----------LAEN 197
           +  SG     +   + L++L++S + F        L  LQ   LA           L+  
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 198 LTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE-IFQLPNLQFLGL 254
              L  LDL   H    VP    + S L   +LS     GE P + + ++  L+ L L
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  110 bits (277), Expect = 7e-27
 Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 19/169 (11%)

Query: 91  TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNL 150
           +  ++ LDL+S+   G I           LQ L L +N F   +IP  + N S L  L+L
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELVSLHL 425

Query: 151 SQSYFSGQIPAELLELSNLEVLDLSYSNF-----DTFYLKLQKPGLANLAENLTNLKALD 205
           S +Y SG IP+ L  LS L  L L  +                         +  L+ L 
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-------------MYVKTLETLI 472

Query: 206 LINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           L    ++  +P  L+N ++L + SLS  RL GE P+ I +L NL  L L
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (264), Expect = 4e-25
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 15/170 (8%)

Query: 87  CNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLT 146
           C      + EL L ++   G I    +L     L  L L  N  +   IPS++ + S+L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLS-GTIPSSLGSLSKLR 445

Query: 147 HLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGL--ANLAENLTNLKAL 204
            L L  +   G+IP EL+ +  LE L L +++           G   + L+ N TNL  +
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT---------GEIPSGLS-NCTNLNWI 495

Query: 205 DLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
            L N  ++  +P  +  L +L    LS     G  P E+    +L +L L
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.2 bits (235), Expect = 2e-21
 Identities = 53/166 (31%), Positives = 69/166 (41%), Gaps = 20/166 (12%)

Query: 95  VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQS 153
             L+++S+   G I        L  LQ LSL +N F   EIP  +      LT L+LS +
Sbjct: 250 KLLNISSNQFVGPI----PPLPLKSLQYLSLAENKFT-GEIPDFLSGACDTLTGLDLSGN 304

Query: 154 YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGL--ANLAENLTNLKALDLINVHI 211
           +F G +P      S LE L LS +NF          G    +    +  LK LDL     
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFS---------GELPMDTLLKMRGLKVLDLSFNEF 355

Query: 212 SSTVPHTLANLS-SLRFSSLSGCRLQGEFPQEIFQ--LPNLQFLGL 254
           S  +P +L NLS SL    LS     G     + Q     LQ L L
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 6e-20
 Identities = 44/171 (25%), Positives = 65/171 (38%), Gaps = 13/171 (7%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS 156
           L L+ + L G+I   SSL  L  L+ L L+ N     EIP  ++    L  L L  +  +
Sbjct: 423 LHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLE-GEIPQELMYVKTLETLILDFNDLT 479

Query: 157 GQIPAELLELSNLEVLDLSYSNF-DTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
           G+IP+ L   +NL  + LS +         +           L NL  L L N   S  +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG---------RLENLAILKLSNNSFSGNI 530

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266
           P  L +  SL +  L+     G  P  +F+           G       N 
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.5 bits (215), Expect = 9e-19
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 40/183 (21%)

Query: 94  VVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS 153
               ++ S    G    + +      +  L +  N  +   IP  I +   L  LNL  +
Sbjct: 610 RNPCNITSRVYGGHT--SPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHN 666

Query: 154 YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS 213
             SG IP E+ +L  L +LDLS  N                                +  
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSS-N-------------------------------KLDG 694

Query: 214 TVPHTLANLSSLRFSSLSGCRLQGEFPQE-IFQ-LPNLQFLG---LCGGPLSKKCNNSEA 268
            +P  ++ L+ L    LS   L G  P+   F+  P  +FL    LCG PL +   ++  
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754

Query: 269 SPP 271
              
Sbjct: 755 GYA 757

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 19/171 (11%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS 156
           L L  + L G I   S L    +L  +SL +N     EIP  I     L  L LS + FS
Sbjct: 471 LILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFS 527

Query: 157 GQIPAELLELSNLEVLDLSYSNF-------------DTFYLKLQKPGLANLAENLTNLKA 203
           G IPAEL +  +L  LDL+ + F                   +       +  N    K 
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK-NDGMKKE 586

Query: 204 LDLIN--VHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252
                  +         L  LS+    +++     G          ++ FL
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  137 bits (348), Expect = 3e-38
 Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 31/227 (13%)

Query: 35  LCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCC--SWDGVKCNEDT- 91
           LC+ +++ ALL  K+ L  N T          +++W P     DCC  +W GV C+ DT 
Sbjct: 2   LCNPQDKQALLQIKKDL-GNPTT---------LSSWLP---TTDCCNRTWLGVLCDTDTQ 48

Query: 92  -GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNL 150
              V  LDL+   L       SSL  L +L  L +   N     IP AI   ++L +L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 151 SQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGL--ANLAENLTNLKALDLIN 208
           + +  SG IP  L ++  L  LD SY+            G    +++ +L NL  +    
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALS---------GTLPPSIS-SLPNLVGITFDG 158

Query: 209 VHISSTVPHTLANLSSL-RFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             IS  +P +  + S L    ++S  RL G+ P     L NL F+ L
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 94.1 bits (235), Expect = 3e-22
 Identities = 44/195 (22%), Positives = 68/195 (34%), Gaps = 43/195 (22%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFS------------ 143
            LD + + L G++    S+  L +L  ++   N  +   IP +  +FS            
Sbjct: 129 TLDFSYNALSGTL--PPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNR 185

Query: 144 ------------RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGL 191
                        L  ++LS++   G          N + + L+ ++   F L      +
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AFDL----GKV 240

Query: 192 ANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251
                   NL  LDL N  I  T+P  L  L  L   ++S   L GE PQ    L     
Sbjct: 241 ----GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDV 295

Query: 252 L------GLCGGPLS 260
                   LCG PL 
Sbjct: 296 SAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 95  VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY 154
             +DL+ + L G    +       + Q++ L  N+  F  +   +     L  L+L  + 
Sbjct: 200 AFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFD-LGK-VGLSKNLNGLDLRNNR 255

Query: 155 FSGQIPAELLELSNLEVLDLSYSNF 179
             G +P  L +L  L  L++S++N 
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNL 280

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (261), Expect = 7e-25
 Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 8/216 (3%)

Query: 39  RERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELD 98
           ++  AL    ++L   +  S         A W  +++     +  GV  N   G V  L 
Sbjct: 30  KDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLS 87

Query: 99  LASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ 158
           L      G +    ++ QL  L+ L+L  +    +E        S        Q      
Sbjct: 88  LEGFGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145

Query: 159 IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHT 218
               +      +  DL     ++   +         +        +  ++ +I+  V   
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIK---KSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 219 LANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           +  L+ LR   +       E   E ++  N ++   
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.7 bits (223), Expect = 6e-20
 Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 20/162 (12%)

Query: 112 SSLFQLVHLQRLSLFDNNF------------------NFSEIPSAILNFSRLTHLNLSQS 153
            ++ +L  L++  + ++ F                   +        N   LT + +   
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 154 YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS 213
               ++P  L  L  +++++++ +   +             A     ++ + +   ++ +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 214 -TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             V  +L  +  L        +L+G+ P        L  L L
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 29/184 (15%), Positives = 51/184 (27%), Gaps = 10/184 (5%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNF------NFSEIPSAILNFSRLTHLN 149
            L  A + L   I +      +  +  +    N        NF  +         ++ +N
Sbjct: 381 NLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 150 LSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINV 209
           LS +  S          S L  ++L  +          K    N   N   L ++DL   
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-NTYLLTSIDLRFN 498

Query: 210 HISSTVP-HTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEA 268
            ++          L  L    LS       FP +      L+  G+     ++       
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 269 SPPE 272
            P  
Sbjct: 558 WPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 25/175 (14%)

Query: 88  NEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH 147
            ED   +++  + S     SI    S    +   ++    NN   + +  A++  ++L  
Sbjct: 155 REDFSDLIKDCINSDPQQKSI--KKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQ 210

Query: 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLI 207
             +  S F  +   E  E  N E      +    +             +NL +L  +++ 
Sbjct: 211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW-------------DNLKDLTDVEVY 257

Query: 208 NVHISSTVPHTLANLSSLRFSSLSGCRL--------QGEFPQEIFQLPNLQFLGL 254
           N    + +P  L  L  ++  +++  R           +   +      +Q + +
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 17/159 (10%)

Query: 104 LYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL 163
           L     + +       +Q + +  NN     + +++    +L  L    +   G++P   
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349

Query: 164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHT-LANL 222
                L  L+L+Y+              AN       ++ L   +  +          ++
Sbjct: 350 GSEIKLASLNLAYNQITEI--------PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 223 SSLRFSSLSGCRLQG-------EFPQEIFQLPNLQFLGL 254
           S +     S   +               F+  N+  + L
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 6/124 (4%)

Query: 139 ILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL 198
           + +  R+T L+L     SG++P  + +L+ LEVL L               G++      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS----AN 132

Query: 199 TNLKALDLINVHISSTVPHTLA--NLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256
            + +    + +H   T        + S L    ++    Q    +          +G   
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 257 GPLS 260
             ++
Sbjct: 193 NNIT 196

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 20/150 (13%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            +  +DL  + L   ++       L +L  + L  N+F  S+ P+  LN S L    +  
Sbjct: 489 LLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSF--SKFPTQPLNSSTLKGFGIRN 545

Query: 153 S------YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL 206
                      + P  +    +L  L +  ++                 +   N+  LD+
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV------N-----EKITPNISVLDI 594

Query: 207 INVHISSTVPHTLANLSSLRFSSLSGCRLQ 236
            +    S     +          L   + Q
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.5 bits (222), Expect = 8e-20
 Identities = 35/255 (13%), Positives = 68/255 (26%), Gaps = 34/255 (13%)

Query: 39  RERSALLNFKESL--VINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVE 96
           ++  AL    E+L     +  S   +       W  +++        GV  + + G V  
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTG 327

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS 156
           L LA     G +    ++ QL  L+ LS   ++   S         +             
Sbjct: 328 LSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 157 GQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP 216
                 L     L + DL     +           + +  +L + +  +L N    + + 
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI--SLKDTQIGNLTN--RITFIS 441

Query: 217 HTLANLSSLRFSSLSGCRLQG-------------------EFPQEIFQLPNLQFLGLCGG 257
             +  L+ L+    +                                 L +L  + L   
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN- 500

Query: 258 PLSKKCNNSEASPPE 272
                C N    P  
Sbjct: 501 -----CPNMTQLPDF 510

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 26/183 (14%)

Query: 96  ELDLASSCLYGSINSTSSL----FQLVHLQRLSLFDNNFN------------------FS 133
            + L  + +    N  + +     +L  LQ +   ++ F                   + 
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 134 EIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTF-YLKLQKPGLA 192
               +  N   LT + L       Q+P  L +L  L+ L+++ +   +   LK     LA
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 193 NLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251
           +  +    ++   +   ++       +L  +  L        ++     +       L  
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTD 599

Query: 252 LGL 254
           L L
Sbjct: 600 LKL 602

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 9e-16
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 27/168 (16%)

Query: 101 SSCLYGSINSTSSLFQLVHLQRLSLFDNNF-----NFSEIPSAILNFSRLTHLNLSQSYF 155
           S  L  +IN    +  +    R+SL D          + I  AI   ++L  +  + S F
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
           +    A   E +N +      +   ++              NL +L  ++L N    + +
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSW-------------SNLKDLTDVELYNCPNMTQL 507

Query: 216 PHTLANLSSLRFSSLSGCRLQG---------EFPQEIFQLPNLQFLGL 254
           P  L +L  L+  +++  R                +    P +Q   +
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 1e-15
 Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 12/184 (6%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAI------LNFSRLTHLN 149
            L   S      I +  +   +  +  +    N          I            + + 
Sbjct: 623 GLGF-SHNKLKYIPNIFNAKSVYVMGSVDFSYNKI--GSEGRNISCSMDDYKGINASTVT 679

Query: 150 LSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINV 209
           LS +             S +  + LS +   +      KP   N   N   L  +DL   
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK-NTYLLTTIDLRFN 738

Query: 210 HISSTVPH-TLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEA 268
            ++S         L  L    +S       FP +      L+  G+     ++       
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 269 SPPE 272
            P  
Sbjct: 798 WPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 24/190 (12%), Positives = 52/190 (27%), Gaps = 28/190 (14%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS 156
            D  S       N   S   L  L  + L++   N +++P  + +   L  LN++ +   
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSLNIACNRGI 528

Query: 157 G---------QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE----------- 196
                     ++  +      +++  + Y+N + F        +  L             
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

Query: 197 ----NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF--QLPNLQ 250
                   L  L L    I        A    +     S  +L+   P       +  + 
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647

Query: 251 FLGLCGGPLS 260
            +      + 
Sbjct: 648 SVDFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 6e-15
 Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 25/175 (14%)

Query: 96  ELDLAS---SCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            +D +         +I+ +   ++ ++   ++L  N              S ++ + LS 
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706

Query: 153 -------SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALD 205
                                  L  +DL + N      KL        A  L  L  +D
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-N------KLTSLSDDFRATTLPYLSNMD 759

Query: 206 LINVHISSTVPHTLANLSSLRF------SSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           +     SS  P    N S L+           G R+  ++P  I   P+L  L +
Sbjct: 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 28/157 (17%)

Query: 95  VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS- 153
             +DL  + L  S++       L +L  + +  N F  S  P+  LN S+L    +    
Sbjct: 731 TTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQR 787

Query: 154 -----YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL-- 206
                    Q P  +    +L  L +  ++                 +    L  LD+  
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV------D-----EKLTPQLYILDIAD 836

Query: 207 ---INVHISSTVPHTLANLSSLRF---SSLSGCRLQG 237
              I++ ++S  P+  A +  L +     + GC   G
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 3/160 (1%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNF-NFSEIPSAILNFSRLTHLNLSQSY 154
           E+ L+ +       +  S   +  LQRL L      N    PS       LT L+LS + 
Sbjct: 434 EIYLSYNKYLQLTRN--SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 155 FSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
            +      L  L  LE+LDL ++N    +      G     + L++L  L+L +      
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
                 +L  L+   L    L            +L+ L L
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 10/162 (6%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
           EL L+++ +    +    +F    L++L L  N       P       RL  L L+    
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQL 207

Query: 156 SGQIPAEL---LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
              +  +L   L  +++  L LS S   T            L    TNL  LDL   +++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLST----TSNTTFLGL--KWTNLTMLDLSYNNLN 261

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
                + A L  L +  L    +Q  F   +  L N+++L L
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 9/136 (6%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
           ++  L+L  N        +    +S+LT L++  +  S   P    +L  L+VL+L ++ 
Sbjct: 26  NITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 179 FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE 238
                               TNL  L L++  I     +      +L    LS   L   
Sbjct: 85  LSQL--------SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 239 FPQEIFQLPNLQFLGL 254
                 QL NLQ L L
Sbjct: 137 KLGTQVQLENLQELLL 152

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 5e-17
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 12/162 (7%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L+L  + L    +   +     +L  L L  N+       +  +    L  L+LS +  
Sbjct: 77  VLNLQHNELSQLSDK--TFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGL 133

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
           S       ++L NL+ L LS +        L+   L       ++LK L+L +  I    
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQA----LKSEELDIF--ANSSLKKLELSSNQIKEFS 187

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIF---QLPNLQFLGL 254
           P     +  L    L+  +L     +++       +++ L L
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 13/166 (7%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
           ++  L+L  + L     +  +  +   L  L +  N  +    P        L  LNL  
Sbjct: 26  NITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQH 82

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           +  S          +NL  L L  ++              N      NL  LDL +  +S
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKI--------KNNPFVKQKNLITLDLSHNGLS 134

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEI--FQLPNLQFLGLCG 256
           ST   T   L +L+   LS  ++Q    +E+  F   +L+ L L  
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 35/170 (20%), Positives = 58/170 (34%), Gaps = 13/170 (7%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            +  LD+  + +           +L  L+ L+L  N  +           + LT L+L  
Sbjct: 50  QLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMS 106

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           +          ++  NL  LDLS++   +                L NL+ L L N  I 
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSST--------KLGTQVQLENLQELLLSNNKIQ 158

Query: 213 STVPHTLA--NLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
           +     L     SSL+   LS  +++   P     +  L  L L    L 
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 7/167 (4%)

Query: 93  HVVELDLASSCLYGSI-NSTSSLFQLVHLQRLSLFDNNFNFSEIPSAI--LNFSRLTHLN 149
            +  L L +  L  S+            ++ LSL ++  + +   +    L ++ LT L+
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLD 254

Query: 150 LSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE-NLT-NLKALDLI 207
           LS +  +         L  LE   L Y+N    +      GL N+   NL  +     + 
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSIS 313

Query: 208 NVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
              +      +   L  L   ++    + G        L NL++L L
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 31/167 (18%), Positives = 50/167 (29%), Gaps = 16/167 (9%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L+L  + +    +       L HL+ L L  N                +  + LS + +
Sbjct: 385 ILNLTKNKISKIESDA--FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
                     + +L+ L L                  +  + L NL  LDL N +I++  
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNV------DSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 216 PHTLANLSSLRFSSLSGCRLQ--------GEFPQEIFQLPNLQFLGL 254
              L  L  L    L    L         G     +  L +L  L L
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 15/173 (8%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDN--------NFNFSEIPSAILNFSR 144
            +    L  + +    +   SL  L +++ L+L  +                 +      
Sbjct: 273 QLEYFFLEYNNIQHLFSH--SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 145 LTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKAL 204
           L HLN+  +   G        L NL+ L LS S      L  +     +LA   + L  L
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET--FVSLA--HSPLHIL 386

Query: 205 DLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCG 256
           +L    IS       + L  L    L    +  E   + ++ L N+  + L  
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 8/128 (6%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171
             L  L HL  L+L  N F+         +   L  ++L  +  +    +      +L+ 
Sbjct: 530 YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLS 231
           L+L   N       +             NL  LD+       T       ++ +  +  +
Sbjct: 589 LNLQ-KN------LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN 641

Query: 232 GCRLQGEF 239
              L   +
Sbjct: 642 IPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 11/87 (12%)

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
           + EV D S+              L       TN+  L+L +  +           S L  
Sbjct: 5   SHEVADCSHLKLTQV-----PDDL------PTNITVLNLTHNQLRRLPAANFTRYSQLTS 53

Query: 228 SSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             +    +    P+   +LP L+ L L
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNL 80

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 14/164 (8%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
               LDL+ + L    +   S F    LQ L L       +    A  + S L+ L L+ 
Sbjct: 29  STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVHI 211
           +            LS+L+ L    +N            L N    +L  LK L++ +  I
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA---------SLENFPIGHLKTLKELNVAHNLI 136

Query: 212 SST-VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
            S  +P   +NL++L    LS  ++Q  +  ++  L  +  L L
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 10/157 (6%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            LDL+ + +    ++   L QL   + L    +N       S  L+   L +L++S ++ 
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQL---EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
                     LS+LEVL ++ ++        Q+  L ++   L NL  LDL    +    
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNS-------FQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252
           P    +LSSL+  ++S              L +LQ L
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 38/169 (22%), Positives = 58/169 (34%), Gaps = 15/169 (8%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            LDL+   +    +   +   L HL  L L  N    S    A    S L  L   ++  
Sbjct: 56  VLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
           +      +  L  L+ L+++++   +F        L     NLTNL+ LDL +  I S  
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 216 PHTLANLSSLRFS----SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
              L  L  +        LS   +        F+   L  L L     S
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 5e-16
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
            +  ++      NF +IP  +       +L+LS +               L+VLDLS   
Sbjct: 6   VVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

Query: 179 FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE 238
                  ++     +L    ++L  L L    I S      + LSSL+        L   
Sbjct: 64  I----QTIEDGAYQSL----SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 239 FPQEIFQLPNLQFLGL 254
               I  L  L+ L +
Sbjct: 116 ENFPIGHLKTLKELNV 131

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 34/181 (18%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNF------------------NFSE 134
           +V    L S     +I            Q L L +  F                  N   
Sbjct: 283 NVSSFSLVSV----TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 135 IPSAILNFSRLTHLNLSQS--YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192
              + ++   L  L+LS++   F G         ++L+ LDLS++   T           
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF------ 392

Query: 193 NLAENLTNLKALDLINVHISSTVPH-TLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251
                L  L+ LD  + ++          +L +L +  +S    +  F      L +L+ 
Sbjct: 393 ---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 252 L 252
           L
Sbjct: 450 L 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 32/179 (17%), Positives = 51/179 (28%), Gaps = 31/179 (17%)

Query: 97  LDLASSCLYGSINSTSSLFQ-LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ--- 152
            +   + L   ++    LF  L ++   SL                     HL L     
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKF 316

Query: 153 ----------------SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE 196
                           +   G      ++L +LE LDLS +              +    
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC------CSQSDF 370

Query: 197 NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
             T+LK LDL    +  T+      L  L         L+      +F  L NL +L +
Sbjct: 371 GTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 8/158 (5%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
           +L    + L    N    +  L  L+ L++  N     ++P    N + L HL+LS +  
Sbjct: 104 KLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
                 +L  L  + +L+LS          +Q      +      L  L L N   S  V
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLHKLTLRNNFDSLNV 216

Query: 216 P-HTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252
               +  L+ L    L     + E   E F    L+ L
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 6/161 (3%)

Query: 95  VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY 154
           + LDL+ + +          F+ + L +L+L +N  + + + + I   + L    L    
Sbjct: 180 LSLDLSLNPMNFIQ---PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 155 FSGQIPAELLELSNLEVL-DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS 213
           F  +   E  + S LE L +L+   F   YL      + +L   LTN+ +  L++V I  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 214 TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
                 +     +   L  C+       ++  L  L F   
Sbjct: 297 VKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 11/158 (6%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L +A +    +        +L +L  L L          P+A  + S L  LN+S + F
Sbjct: 449 VLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF 506

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
                     L++L+VLD S ++       +       L    ++L  L+L     + T 
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNH-------IMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 216 PHT--LANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251
            H   L  +   R   +   R++   P +   +P L  
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 14/58 (24%), Positives = 22/58 (37%)

Query: 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256
            + K LDL    +     ++  +   L+   LS C +Q         L +L  L L G
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 40/175 (22%), Positives = 60/175 (34%), Gaps = 25/175 (14%)

Query: 106 GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE 165
            S +++     LV+LQ L L         +P++I N   L  L +  S  S  +   +  
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227

Query: 166 LSNLEVLDLSYSNFDTFYLKLQKPGLANLAE---NLTNLKALDLINVHISSTVPHTLANL 222
           L  LE LDL                L N          LK L L +     T+P  +  L
Sbjct: 228 LPKLEELDLRGCTA-----------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 223 SSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPHS 277
           + L    L GC      P  I QLP    + +          + +A   +  P +
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILV--------PPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 7e-16
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 32/185 (17%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLS---------QSYFSGQIPAE 162
            ++ Q   L+ L+L  N      +P++I + +RL  L++          +   S     E
Sbjct: 121 DTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 163 LLELSNLEVLDLSYSNFDTF-----------YLKLQKPGLANLAE---NLTNLKALDLIN 208
              L NL+ L L ++   +             LK++   L+ L     +L  L+ LDL  
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238

Query: 209 VHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEA 268
                  P      + L+   L  C      P +I +L  L+ L L G         + +
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG-------CVNLS 291

Query: 269 SPPEE 273
             P  
Sbjct: 292 RLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 22/142 (15%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171
           +S+  L +L+ L + ++    S +  AI +  +L  L+L         P      + L+ 
Sbjct: 200 ASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 172 LDLSYSNFDTFYLKLQKPGLANLAE------NLTNLKALDLINVHISSTVPHTLANLSSL 225
           L L   +              NL         LT L+ LDL      S +P  +A L + 
Sbjct: 258 LILKDCS--------------NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 226 RFSSLSGCRLQGEFPQEIFQLP 247
               +                P
Sbjct: 304 CIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 14/151 (9%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFN-FSEIPSAI--LNFSRLTHLNLSQSYFSGQIPAELL 164
            N   S ++  +     +              +          L L       Q P +  
Sbjct: 43  RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101

Query: 165 ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSS 224
            LS+L+ + +  +             L +  +    L+ L L    + + +P ++A+L+ 
Sbjct: 102 RLSHLQHMTIDAAGLME---------LPDTMQQFAGLETLTLARNPLRA-LPASIASLNR 151

Query: 225 LRFSSLSGCRLQGEFPQEIFQLPNLQFLGLC 255
           LR  S+  C    E P+ +            
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGL 182

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 39/182 (21%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            V  ++L     +   ++  +      LQ L L   +   SE+PS ++  S L  L LS 
Sbjct: 255 SVESINLQKHYFFNISSN--TFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSA 310

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE---------------- 196
           + F            +L  L +  +             L NL E                
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 197 ---NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFL 252
              NL++L++L+L      S           L    L+  RL+ +  Q  FQ L  L+ L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 253 GL 254
            L
Sbjct: 431 NL 432

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L+L+ +             +   L+ L L        +  S   N   L  LNLS S  
Sbjct: 380 SLNLSYNEPLSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
                     L  L+ L+L  ++F             N  + L  L+ L L    +SS  
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKG-----NIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250
            H   +L  +    LS  RL     + +  L  + 
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEI-PSAILNFSRLTHLNLS 151
            +  L +  +     + +   L  L +L+ L L  ++   S+     + N S L  LNLS
Sbjct: 326 SLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 152 QSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI 211
            +           E   LE+LDL+++        L+     +  +NL  LK L+L +  +
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTR-------LKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 212 SSTVPHTLANLSSLRFSSLSGCRLQG--EFPQEIFQ-LPNLQFLGL 254
             +       L +L+  +L G              Q L  L+ L L
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 23/136 (16%), Positives = 36/136 (26%), Gaps = 9/136 (6%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
             + L    N    +   +       LT L+L++                L+ L L+ + 
Sbjct: 34  STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 179 FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE 238
                                 LK L  I   ISS     L N  +L    L    +   
Sbjct: 93  LIFM--------AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 239 FPQEIFQLPNLQFLGL 254
              + F    L+ L  
Sbjct: 145 KLPKGFPTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
           ELDL+   +  S      L  L HLQ L+L  N    S    A     +L  L+L+ +  
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRL 412

Query: 156 SGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
             +      + L  L+VL+LS+S  D             L + L  L+ L+L   H    
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDIS--------SEQLFDGLPALQHLNLQGNHFPKG 464

Query: 215 V---PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256
                ++L  L  L    LS C L          L  +  + L  
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 13/163 (7%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
               L+ + + L    N+  +  +L++L  L L      +        +  RL  L L+ 
Sbjct: 34  STECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTA 90

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVHI 211
           +         L     L+ L    +             +  +   N   L++L L + HI
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGIS---------SIDFIPLHNQKTLESLYLGSNHI 141

Query: 212 SSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           SS           L+        +     +++  L     L L
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 11/164 (6%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            +  LD  ++ +     S   +  L     LSL  N  + + I     + +    LN   
Sbjct: 154 KLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 153 SYFSGQIPAEL--LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH 210
           +     I   L    + +L +      + +                   ++++++L   +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI------SPAVFEGLCEMSVESINLQKHY 265

Query: 211 ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             +   +T    S L+   L+   L  E P  +  L  L+ L L
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ--- 152
            LDLA + L    ++ S    L  L+ L+L  +  + S           L HLNL     
Sbjct: 404 LLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHF 461

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNF-----DTF-------YLKLQKPGLANL-AENLT 199
              + Q    L  L  LE+L LS+ +        F       ++ L    L +   E L+
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 200 NLKA--LDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG 237
           +LK   L+L + HIS  +P  L  LS  R  +L    L  
Sbjct: 522 HLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 25/182 (13%), Positives = 45/182 (24%), Gaps = 28/182 (15%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L    + +         L     L+ L L  N+ + S          +L  L+   +  
Sbjct: 109 HLFFIQTGISSIDFIP--LHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAI 165

Query: 156 SGQIPAELLELSNLEVLDLSYSN----------FDTFYLKLQK-----------PGLANL 194
                 ++  L     L L+ +           FD+   +               GL N 
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 195 AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL--SGCRLQGEFPQEIFQLPNLQFL 252
              + +L      ++      P     L  +   S+                    LQ L
Sbjct: 226 --TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 253 GL 254
            L
Sbjct: 284 DL 285

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176
           L  +  + L  N    +      L+  +  +LNL+ ++ S  +P+ L  LS    ++L  
Sbjct: 499 LKMMNHVDLSHNRL--TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 177 SNFD--------TFYLKLQKPGLANLAE----NLTNLKALDLINVHIS 212
           +  D          + K     L +  +    N   L+ + L +V +S
Sbjct: 557 NPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 10/157 (6%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            LDL+ +     I  +++   L  LQ L    +        SA L+  +L +L++S +  
Sbjct: 380 HLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
                   L L++L  L ++ ++F           L+N+  N TNL  LDL    +    
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDN-------TLSNVFANTTNLTFLDLSKCQLEQIS 489

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252
                 L  L+  ++S   L         QL +L  L
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 11/171 (6%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            LD   S L   +   S+   L  L  L +   N    +     L  + L  L ++ + F
Sbjct: 403 HLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSF 460

Query: 156 SGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
                + +    +NL  LDLS    +             + + L  L+ L++ + ++   
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQI--------SWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265
                  L SL     S  R++           +L F  L    ++  C +
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
             + + L  N         +  NFS L  L+LS+             L +L  L L+ + 
Sbjct: 33  STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 179 FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG- 237
             +F               LT+L+ L  +   ++S     +  L +L+  +++   +   
Sbjct: 92  IQSFS--------PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 238 EFPQEIFQLPNLQFLGL 254
           + P     L NL  + L
Sbjct: 144 KLPAYFSNLTNLVHVDL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            LDL+   +    +   +   L HL  L L  N       P +    + L +L   ++  
Sbjct: 60  WLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKL 116

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
           +      + +L  L+ L++++ N       +    L     NLTNL  +DL   +I +  
Sbjct: 117 ASLESFPIGQLITLKKLNVAH-N------FIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 216 PHTLANLSSLRFS----SLSGCRLQGEFPQEIFQLPNLQFL 252
            + L  L           +S   +      + FQ   L  L
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 10/142 (7%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171
            S      LQ L L        E   A      L++L L+ +      P     L++LE 
Sbjct: 50  YSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108

Query: 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSL 230
           L    +   +          +     L  LK L++ +  I S  +P   +NL++L    L
Sbjct: 109 LVAVETKLASLE--------SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 231 SGCRLQGEFPQEIFQLPNLQFL 252
           S   +Q     ++  L     +
Sbjct: 161 SYNYIQTITVNDLQFLRENPQV 182

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 131 NFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPG 190
             S++P  I   S   +++LS +             S L+ LDLS    +     ++   
Sbjct: 22  KLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKA 75

Query: 191 LANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250
              L     +L  L L    I S  P + + L+SL        +L       I QL  L+
Sbjct: 76  WHGL----HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 251 FLGL 254
            L +
Sbjct: 132 KLNV 135

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 16/162 (9%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L    + L    +    + QL+ L++L++  N  +  ++P+   N + L H++LS +Y 
Sbjct: 108 NLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 156 SGQIPAELLELSNL----EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL-INVH 210
                 +L  L         LD+S +  D          + + A     L  L L  N +
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDF---------IQDQAFQGIKLHELTLRGNFN 216

Query: 211 ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252
            S+ +   L NL+ L    L     + E   EIF+   ++ L
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 32/183 (17%), Positives = 59/183 (32%), Gaps = 34/183 (18%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNF------------------NFSE 134
           +V  + LA      SI     + +    Q LS+                       N   
Sbjct: 286 NVSAMSLAGV----SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341

Query: 135 IPSAILNFSRLTHLNLSQSYFSGQIPA--ELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192
           I    +    L++L+LS++  S         L  ++L  LDLS++             ++
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII---------MS 392

Query: 193 NLAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251
                L  L+ LD  +  +          +L  L +  +S    + +F      L +L  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 252 LGL 254
           L +
Sbjct: 453 LKM 455

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 7/144 (4%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171
              FQ + L  L+L  N  + + + + + N + L    L    F  +   E+ E S +E 
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 172 L-DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL 230
           L D++   F   Y       +      L N+ A+ L  V I       +      +  S+
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSI 314

Query: 231 SGCRLQGEFPQEIFQLPNLQFLGL 254
             C+L+ +FP     LP L+ L L
Sbjct: 315 IRCQLK-QFP--TLDLPFLKSLTL 335

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSY 154
            L            +  S   L  L+ L L  N  +F    S +    + L +L+LS + 
Sbjct: 329 RLTF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 155 FSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
               + +  L L  LE LD  +SN              ++  +L NL  LD+ + H    
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQM-------SEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
                  LSSL    ++G   Q  F  +IF  L NL FL L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 24/190 (12%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            LDL+ + L      + S F    L+ L L  N      + S  L   +L HL+   S  
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNL 408

Query: 156 SGQIPAE--LLELSNLEVLDLSYSNFDTF------------YLKL-----QKPGLANLAE 196
             Q+      L L NL  LD+S+++                 LK+     Q+  L ++  
Sbjct: 409 K-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 197 NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLC 255
            L NL  LDL    +    P    +LSSL+  +++  +L+   P  IF  L +LQ + L 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLH 526

Query: 256 GGPLSKKCNN 265
             P    C  
Sbjct: 527 TNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171
            S F    LQ L L        E   A  + S L+ L L+ +            LS+L+ 
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSL 230
           L    +N  +               +L  LK L++ +  I S  +P   +NL++L    L
Sbjct: 105 LVAVETNLASLE--------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 231 SGCRLQGEFPQEIFQLPNLQFLGL 254
           S  ++Q  +  ++  L  +  L L
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 9e-11
 Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 15/150 (10%)

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL 174
            L HL  L L  N      +        S L  L   ++  +      +  L  L+ L++
Sbjct: 74  SLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS----SL 230
           ++ N       +Q   L     NLTNL+ LDL +  I S     L  L  +        L
Sbjct: 132 AH-N------LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 231 SGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
           S   +        F+   L  L L     S
Sbjct: 185 SLNPMN-FIQPGAFKEIRLHKLTLRNNFDS 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187
              NF +IP  +       +L+LS +               L+VLDLS     T      
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE---- 68

Query: 188 KPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLP 247
                   ++L++L  L L    I S      + LSSL+        L       I  L 
Sbjct: 69  ----DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 248 NLQFLGL 254
            L+ L +
Sbjct: 125 TLKELNV 131

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 32/203 (15%)

Query: 87  CNEDTGHVVELDLASSCLYGSINSTSSL----FQLVHLQRLSLFDNNFNFSEIPSAILNF 142
              D   + ++ L +  L  S+N  + +    F+ + L +L+L +N  + + + + I   
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 143 SRLTHLNLSQSYFSGQ-----IPAELLE-LSNLEVLDLSYSNFDTFYLKLQK--PGLANL 194
           + L    L    F  +          LE L NL + +   +  D +   +      L N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 195 AEN---------------LTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEF 239
           +                     + L+L+N          L +L  L F+S      +G  
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS-----NKGGN 339

Query: 240 PQEIFQLPNLQFLGLCGGPLSKK 262
                 LP+L+FL L    LS K
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFK 362

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 22/185 (11%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
           +L    + L  +      +  L  L+ L++  N     ++P    N + L HL+LS +  
Sbjct: 104 KLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 156 SGQIPAELLELSNLEV----LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI 211
                 +L  L  + +    LDLS +  +          +   A     L  L L N   
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---------IQPGAFKEIRLHKLTLRNNFD 212

Query: 212 SSTVPHT-LANLSSLRFSSLSGCRLQG-----EFPQEIFQ-LPNLQFLGLCGGPLSKKCN 264
           S  V  T +  L+ L    L     +      +F +   + L NL         L    +
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 265 NSEAS 269
           +    
Sbjct: 273 DIIDL 277

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 95  VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY 154
           + LD++ +    + N       L  L+ L +  N+F  + +P        LT L+LSQ  
Sbjct: 424 IYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 155 FSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL 206
              Q+       LS+L+VL+++ +   +       P    + + LT+L+ + L
Sbjct: 482 LE-QLSPTAFNSLSSLQVLNMASNQLKSV------P--DGIFDRLTSLQKIWL 525

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 6e-15
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 21/175 (12%)

Query: 104 LYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL 163
           L  + N    L     ++ L   +NN   S +  +        ++ L+ +  +     + 
Sbjct: 85  LDLNNNYVQELLVGPSIETLHAANNNI--SRVSCSR--GQGKKNIYLANNKITMLRDLDE 140

Query: 164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE---------------NLTNLKALDLIN 208
              S ++ LDL  +  DT            L                     LK LDL +
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200

Query: 209 VHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKC 263
             ++  +     + + + + SL   +L     + +    NL+   L G       
Sbjct: 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176
               +   + D++     + S   +   +  L+LS +  S    A+L   + LE+L+LS 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 177 ---SNFDTF-------YLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR 226
                            L L    +  L     +++ L   N +IS           ++ 
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQEL-LVGPSIETLHAANNNISRVSCSRGQGKKNI- 125

Query: 227 FSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
              L+  ++      +      +Q+L L
Sbjct: 126 --YLANNKITMLRDLDEGCRSRVQYLDL 151

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 135 IPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL 194
           I     N +R     ++ S     + +      N++ LDLS +              A  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--------AAD 53

Query: 195 AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
               T L+ L+L +  +       L +LS+LR   L+   +     QE+   P+++ L  
Sbjct: 54  LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHA 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 11/145 (7%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I           L+ L L  N    + +     + + +T ++L  +     I   L    
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
           NLE  DL   N            L +       ++ +    V   +        + +L  
Sbjct: 238 NLEHFDLRG-N------GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 228 SSLSGCR-LQGEFPQEIFQLPNLQF 251
                C  L   F   +  L +   
Sbjct: 291 YGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 9/65 (13%), Positives = 23/65 (35%)

Query: 190 GLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249
            +  + +N    K   + +  +   +     +  +++   LSG  L      ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 250 QFLGL 254
           + L L
Sbjct: 61  ELLNL 65

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 8e-14
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 21/175 (12%)

Query: 104 LYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL 163
           L  + N    L     ++ L   +NN   S +  +        ++ L+ +  +     + 
Sbjct: 85  LDLNNNYVQELLVGPSIETLHAANNNI--SRVSCSR--GQGKKNIYLANNKITMLRDLDE 140

Query: 164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE---------------NLTNLKALDLIN 208
              S ++ LDL  +  DT            L                     LK LDL +
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200

Query: 209 VHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKC 263
             ++  +     + + + + SL   +L     + +    NL+   L G       
Sbjct: 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 23/173 (13%), Positives = 40/173 (23%), Gaps = 22/173 (12%)

Query: 107 SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLEL 166
            I           L+ L L  N    + +     + + +T ++L  +     I   L   
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 167 SNLEVLDLSYSNFDTFYLKLQKPGLANLA---------------ENLTNLKALDLINVHI 211
            NLE  DL  + F    L+        +                E  T            
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 212 SSTVPHTLANLSSLRFSSLSGCRLQG----EFPQEIFQLPNLQFLGLCGGPLS 260
                     L +L+    +    QG        E       + +        
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 34/170 (20%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS 175
               +   + D++    +  +++  +   +  L+LS +  S    A+L   + LE+L+LS
Sbjct: 9   GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 176 Y---SNFDTF-------YLKLQK------PGLANL--------------AENLTNLKALD 205
                             L L            ++                     K + 
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 206 LINVHISSTVPHTLANLSSLRFSSLSGCRLQG-EFPQEIFQLPNLQFLGL 254
           L N  I+          S +++  L    +    F +       L+ L L
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 15/157 (9%), Positives = 34/157 (21%), Gaps = 18/157 (11%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ-SYFSGQIPAELLELSNLE 170
            +L    +L+   L  N F+   +        R+  +        +GQ   E    +   
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 171 VLDLSYSNFDTFYLK-----------------LQKPGLANLAENLTNLKALDLINVHISS 213
                  +    +                    +   L    EN    + +D +     +
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 214 TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250
            +        +          L  +          L 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 9/65 (13%), Positives = 23/65 (35%)

Query: 190 GLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249
            +  + +N    K   + +  +   +     +  +++   LSG  L      ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 250 QFLGL 254
           + L L
Sbjct: 61  ELLNL 65

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLELSN 168
                 +L  L +LSL  N  +F    S +    + L +L+LS +     + +  L L  
Sbjct: 44  PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 102

Query: 169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS 228
           LE LD  +SN       + +  +     +L NL  LD+ + H           LSSL   
Sbjct: 103 LEHLDFQHSNLKQ----MSEFSVFL---SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155

Query: 229 SLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
            ++G   Q  F  +IF  L NL FL L
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDL 182

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 16/172 (9%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            + +L L+S+ L      + S F    L+ L L  N      + S  L   +L HL+   
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQH 110

Query: 153 SYFSGQIPAE--LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLI-NV 209
           S    Q+      L L NL  LD+S+++               +   L++L+ L +  N 
Sbjct: 111 SNLK-QMSEFSVFLSLRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNS 161

Query: 210 HISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPLS 260
              + +P     L +L F  LS C+L+ +     F  L +LQ L +      
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 19/129 (14%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLS 175
           L  L+ L +  N+F  + +P        LT L+LSQ     Q+       LS+L+VL++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 176 YSNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVHISSTVPHTLANL-SSLRFSSLSG- 232
           ++NF +         L     + L +L+ LD    HI ++    L +  SSL F +L+  
Sbjct: 208 HNNFFS---------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 233 -----CRLQ 236
                C  Q
Sbjct: 259 DFACTCEHQ 267

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 17/163 (10%)

Query: 104 LYGSINSTSSL-FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE 162
           L  S N  +SL      L +L  ++N    + +P      S L  L++S +  +  +P  
Sbjct: 146 LSVSDNQLASLPALPSELCKLWAYNNQL--TSLPMLP---SGLQELSVSDNQLA-SLPTL 199

Query: 163 LLELSNLEVLDLSYSNFDTF-----YLKLQKPGLANLAENLTNLKALDLINVHISSTVPH 217
             EL  L   +   ++          L +    L +L    + LK L +    ++S +P 
Sbjct: 200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPM 258

Query: 218 TLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
             + L SL   S+   +L    P+ +  L +   + L G PLS
Sbjct: 259 LPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 19/141 (13%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
           H+  L + DNN     +P+       L  L +S +  +  +P     L  L +     ++
Sbjct: 62  HITTLVIPDNNLT--SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 179 FDTF-----YLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGC 233
                     L +    L +L      L+ L + +  ++S +P   + L  L        
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLW---AYNN 171

Query: 234 RLQGEFPQEIFQLPNLQFLGL 254
           +L    P        LQ L +
Sbjct: 172 QLT-SLPMLP---SGLQELSV 188

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176
              LQ LS+ DN    + +P+     S L  L    +  +  +PA     S L+ L +S 
Sbjct: 180 PSGLQELSVSDNQL--ASLPTLP---SELYKLWAYNNRLT-SLPALP---SGLKELIVSG 230

Query: 177 SNFDTF--------YLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS 228
           +   +          L +    L +L    + L +L +    ++  +P +L +LSS    
Sbjct: 231 NRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 229 SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPHSESV 280
           +L G  L  E   +  +   +       GP+ +      ++P E      + 
Sbjct: 290 NLEGNPLS-ERTLQALR--EITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 21/170 (12%)

Query: 120 LQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNF 179
           L+ L +  N    + +P      S L  L +S +  +  +P      S L  L +  +  
Sbjct: 223 LKELIVSGNRL--TSLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQL 273

Query: 180 DTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSS---LSGCRLQ 236
                      L     +L++   ++L    +S      L  ++S    S   +      
Sbjct: 274 TR---------LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 237 GEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPHSESVFTFGWK 286
              P+E   L       L      +           ++ ++++   F  +
Sbjct: 325 ASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDR 374

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 18/96 (18%)

Query: 166 LSNLEVLDLSYSNFDTFYLKLQKPGLANL-AENLTNLKALDLINVHISSTVPHTLANLSS 224
            +   VL++  S            GL  L      ++  L + + +++S +P     L +
Sbjct: 39  NNGNAVLNVGES------------GLTTLPDCLPAHITTLVIPDNNLTS-LPALPPELRT 85

Query: 225 LRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
           L    +SG +L    P     L  L         L 
Sbjct: 86  LE---VSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 17/151 (11%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLS 175
           L  L+ L +    +    +    L    LT L+++    +  +P   +  L  L  L+LS
Sbjct: 199 LYRLKVLEISHWPY-LDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLS 256

Query: 176 YSNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234
           Y+   T         +       L  L+ + L+   ++   P+    L+ LR  ++SG +
Sbjct: 257 YNPIST---------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 235 LQGEFPQEIFQ-LPNLQFLGLCGGPLSKKCN 264
           L     + +F  + NL+ L L   PL+  C+
Sbjct: 308 LT-TLEESVFHSVGNLETLILDSNPLA--CD 335

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 23/180 (12%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLS 151
           H+ EL+L  + +  ++    +   L +L+ L L  N      IP  +    S LT L++S
Sbjct: 57  HLEELELNENIV-SAVEP-GAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDIS 112

Query: 152 QSYFSGQIPAELLE-LSNLEVLDLSYSNF-----DTF-------YLKLQKPGLANLA--- 195
           ++     +   + + L NL+ L++  ++        F        L L+K  L ++    
Sbjct: 113 ENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171

Query: 196 -ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             +L  L  L L +++I++   ++   L  L+   +S                NL  L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 15/148 (10%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLE-LS 167
           +        HL+ L L +N    S +   A  N   L  L L  +     IP  +   LS
Sbjct: 48  NQDEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS 104

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
           NL  LD+S +             L  + ++L NLK+L++ +  +        + L+SL  
Sbjct: 105 NLTKLDISENKIVIL--------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156

Query: 228 SSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
            +L  C L    P E    L  L  L L
Sbjct: 157 LTLEKCNLT-SIPTEALSHLHGLIVLRL 183

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187
           +   F  +P  I   +    L+L ++        E     +LE L+L+ +          
Sbjct: 19  HRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA------ 70

Query: 188 KPGLANLA-ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ- 245
              +   A  NL NL+ L L +  +          LS+L    +S  ++       +FQ 
Sbjct: 71  ---VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQD 126

Query: 246 LPNLQFLGLCGGPLSK 261
           L NL+ L +    L  
Sbjct: 127 LYNLKSLEVGDNDLVY 142

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 8e-13
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 16/151 (10%)

Query: 104 LYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL 163
              S N  S+L   + ++ L    N+   + +   +     LT L L  +  +      L
Sbjct: 197 ANVSYNLLSTLAIPIAVEELDASHNSI--NVVRGPV--NVELTILKLQHNNLT-DTAW-L 250

Query: 164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLS 223
           L    L  +DLSY+  +            +    +  L+ L + N  + + +      + 
Sbjct: 251 LNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301

Query: 224 SLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           +L+   LS   L     +   Q   L+ L L
Sbjct: 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYF 155
            D+        +        L + + ++  ++     ++P+A+L +F ++  LNL+    
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 156 SGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
             +I          ++ L + ++               ++ +N+  L  L L    +SS 
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFNAIRYL--------PPHVFQNVPLLTVLVLERNDLSSL 138

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
                 N   L   S+S   L+     + FQ   +LQ L L
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL 178

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLE 170
           S+L        + +     +        +  +    +    S    ++PA LL+    +E
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFED-ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 78

Query: 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL 230
           +L+L+    +                    ++ L +    I    PH   N+  L    L
Sbjct: 79  LLNLNDLQIEEID--------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130

Query: 231 SGCRLQGEFPQEIFQ-LPNLQFLGL 254
               L    P+ IF   P L  L +
Sbjct: 131 ERNDLS-SLPRGIFHNTPKLTTLSM 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 22/155 (14%)

Query: 112 SSLFQ-LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170
              FQ    LQ L L  N    + +  +      L H N+S +  S      L     +E
Sbjct: 164 DDTFQATTSLQNLQLSSNRL--THVDLS--LIPSLFHANVSYNLLS-----TLAIPIAVE 214

Query: 171 VLDLSYSNFDTF---------YLKLQKPGLANLA--ENLTNLKALDLINVHISSTVPHTL 219
            LD S+++ +            LKLQ   L + A   N   L  +DL    +   + H  
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 220 ANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             +  L    +S  RL          +P L+ L L
Sbjct: 275 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFD 180
           QR ++      +  I S +        +++           E + L+N +++    S   
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 181 TFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP 240
                      A L ++   ++ L+L ++ I     +  A   +++   +    ++   P
Sbjct: 65  KLP--------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLP 115

Query: 241 QEIFQ-LPNLQFLGLCG 256
             +FQ +P L  L L  
Sbjct: 116 PHVFQNVPLLTVLVLER 132

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 15/123 (12%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169
                 ++  L+RL + +N      +         L  L+LS ++    +     +   L
Sbjct: 270 MYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

Query: 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL-ANLSSLRFS 228
           E L L +++  T  L                LK L L +          L  N++     
Sbjct: 327 ENLYLDHNSIVTLKL-----------STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 375

Query: 229 SLS 231
              
Sbjct: 376 DAD 378

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I   S L  L  L   + + N    ++I   + N +RL  L +  +  +   P  L  LS
Sbjct: 189 IEDISPLASLTSLHYFTAYVN--QITDITP-VANMTRLNSLKIGNNKITDLSP--LANLS 243

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
            L  L++  +             +    ++LT LK L++ +  IS      L NLS L  
Sbjct: 244 QLTWLEIGTNQISDI------NAV----KDLTKLKMLNVGSNQISD--ISVLNNLSQLNS 291

Query: 228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261
             L+  +L  E  + I  L NL  L L    ++ 
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 22/159 (13%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L+L  +     I   S L  LV L  L +  N        SA+ N + L  L L++   
Sbjct: 70  YLNLNGN----QITDISPLSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNI 122

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
           S   P  L  L+ +  L+L  ++  +         L+ L+ N+T L  L +    +    
Sbjct: 123 SDISP--LANLTKMYSLNLGANHNLSD--------LSPLS-NMTGLNYLTVTESKVKDVT 171

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           P  +ANL+ L   SL+  +++      +  L +L +   
Sbjct: 172 P--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 20/160 (12%)

Query: 107 SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLEL 166
            IN       L    R  L   +               +T L ++    +  I   +  L
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGEKVA-SIQG-IEYL 65

Query: 167 SNLEVLDLSYSNFDTF----------YLKLQKPGLANLAE--NLTNLKALDLINVHISST 214
           +NLE L+L+ +                L +    + +++   NLTNL+ L L   +IS  
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI 125

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
            P  LANL+ +   +L       +    +  +  L +L +
Sbjct: 126 SP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTV 162

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 23/157 (14%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I   + +  +  L  L + +N    +++   + N S+LT L +  +  S  I A + +L+
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKI--TDLS-PLANLSQLTWLEIGTNQISD-INA-VKDLT 265

Query: 168 NLEVLDLSY---SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSS 224
            L++L++     S+                  NL+ L +L L N  + +     +  L++
Sbjct: 266 KLKMLNVGSNQISDISVL-------------NNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 225 LRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261
           L    LS   +     + +  L  +         + K
Sbjct: 313 LTTLFLSQNHITDI--RPLASLSKMDSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 23/162 (14%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
             ++  L  +    ++  T S   L  +  L               +   + LT +N S 
Sbjct: 25  EKMKTVLGKT----NVTDTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 77

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           +  +   P  L  L+ L  + ++ +             +  LA NLTNL  L L N  I+
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIA---------DITPLA-NLTNLTGLTLFNNQIT 125

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
              P  L NL++L    LS   +       +  L +LQ L  
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 26/174 (14%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            V  L          I S   +  L +L +++  +N    ++I   + N ++L  + ++ 
Sbjct: 47  QVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQL--TDIT-PLKNLTKLVDILMNN 99

Query: 153 SYFSGQIPAELLELSNLEVLDLSY---SNFDTF-------YLKLQKPGLANLA--ENLTN 200
           +  +   P  L  L+NL  L L     ++ D          L+L    +++++    LT+
Sbjct: 100 NQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 157

Query: 201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           L+ L   N  ++   P  LANL++L    +S  ++       + +L NL+ L  
Sbjct: 158 LQQLSFGN-QVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 206

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I+  + L  L +L  LSL  N     +    + + + LT L+L+ +  S   P  L  L+
Sbjct: 211 ISDITPLGILTNLDELSLNGNQL---KDIGTLASLTNLTDLDLANNQISNLAP--LSGLT 265

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
            L  L L  +             L      LT L  L+L    +    P  ++NL +L +
Sbjct: 266 KLTELKLGANQISNI------SPL----AGLTALTNLELNENQLEDISP--ISNLKNLTY 313

Query: 228 SSLSGCRLQGEFPQEIFQLPNLQFLGL 254
            +L    +       +  L  LQ L  
Sbjct: 314 LTLYFNNISD--ISPVSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 39/158 (24%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 104 LYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL 163
               +     L  L  L+RL +  N        S +   + L  L  + +  S   P  L
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISSNKV---SDISVLAKLTNLESLIATNNQISDITP--L 217

Query: 164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLS 223
             L+NL+ L L+ +             L     +LTNL  LDL N  IS+  P  L+ L+
Sbjct: 218 GILTNLDELSLNGNQLKDI------GTL----ASLTNLTDLDLANNQISNLAP--LSGLT 265

Query: 224 SLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261
            L    L   ++    P  +  L  L  L L    L  
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 19/167 (11%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I++ S L  L  L  L L +N        S I N   LT+L L  +  S   P  +  L+
Sbjct: 277 ISNISPLAGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISDISP--VSSLT 331

Query: 168 NLEVLDLSY---SNFDTF-------YLKLQKPGLANLAE--NLTNLKALDLINVHISSTV 215
            L+ L       S+  +        +L      +++L    NLT +  L L +   ++  
Sbjct: 332 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAP 391

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKK 262
            +  AN+S    +++         P  I    +     +     S  
Sbjct: 392 VNYKANVSIP--NTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 18/154 (11%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I+  S +  L  LQRL  ++N        S++ N + +  L+   +  S   P  L  L+
Sbjct: 321 ISDISPVSSLTKLQRLFFYNNKV---SDVSSLANLTNINWLSAGHNQISDLTP--LANLT 375

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLI-NVHISSTVPHTLANLSSLR 226
            +  L L+   +                    N+   + + NV  +   P T+++  S  
Sbjct: 376 RITQLGLNDQAWTNA-----------PVNYKANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 227 FSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
              ++         +  +       +G      S
Sbjct: 425 EPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFS 457

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 20/160 (12%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            + LA+     ++   + +    +++ L++ +   + +   + I   S L  L +     
Sbjct: 48  YITLANI----NVTDLTGIEYAHNIKDLTINNI--HATNY-NPISGLSNLERLRIMGKDV 100

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL-INVHISST 214
           +      L  L++L +LD+S+S             L  +   L  + ++DL  N  I+  
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHS-------AHDDSILTKIN-TLPKVNSIDLSYNGAITDI 152

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           +P  L  L  L+  ++    +       I   P L  L  
Sbjct: 153 MP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
             + + +  L +L+RL +   +   S+    +   + LT L++S S     I  ++  L 
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
            +  +DLSY+   T         +  L   L  LK+L++    +       + +   L  
Sbjct: 137 KVNSIDLSYNGAIT--------DIMPLK-TLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185

Query: 228 SSLSGCRLQGE 238
                  + G+
Sbjct: 186 LYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 12/116 (10%)

Query: 139 ILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL 198
               + LT++ L+    +      +    N++ L ++  +               ++  L
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN---------YNPIS-GL 87

Query: 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           +NL+ L ++   ++S     L+ L+SL    +S          +I  LP +  + L
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 40/185 (21%), Positives = 58/185 (31%), Gaps = 15/185 (8%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
               L L S     ++ + SS   L  LQ L L       +    A  N   L  L+L  
Sbjct: 25  TTERLLL-SFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 153 SYFSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI 211
           S     +  +  + L +L  L L +       LK           NL  L  LDL    I
Sbjct: 83  SKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLK------DGYFRNLKALTRLDLSKNQI 135

Query: 212 SSTVPH-TLANLSSLRFSSLSGCRLQGEFPQEIF---QLPNLQFLGLCGGPLSKKCNNSE 267
            S   H +   L+SL+    S  ++     +      Q   L F  L    L  + +   
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 268 ASPPE 272
                
Sbjct: 195 GKCMN 199

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS 156
           + L+ + L  +++    L ++ HLQ L L  N F+             L  L L ++   
Sbjct: 406 IHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 157 GQIPAELLE-----LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI 211
                EL       LS+L+VL L+++  ++            +  +LT L+ L L +  +
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLP--------PGVFSHLTALRGLSLNSNRL 516

Query: 212 SSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSE 267
           +    + L   ++L    +S  +L    P       +L  L +       +C  S 
Sbjct: 517 TVLSHNDL--PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFICECELST 567

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 13/157 (8%)

Query: 107 SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAI---LNFSRLTHLNLSQSYFSGQIPAEL 163
           S +   SL    H+       +N    +        L  S + HL+LS  +         
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNI--KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLS 223
             L +L+VL+L+Y+  +                 L NL+ L+L    +          L 
Sbjct: 287 ETLKDLKVLNLAYNKINKIA--------DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 224 SLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
            + +  L    +     Q    L  LQ L L    L+
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 106 GSINSTSSLFQLVHLQRLSLFDNNF------NFSEIPSAILNFSRLTHLNLSQSYFSG-- 157
                  + F+ + L+ L +  N +      NFS   S    FS +   ++  + F    
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 158 --QIPAEL---LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
                      L  S++  LDLS+    +          + + E L +LK L+L    I+
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSL--------NSRVFETLKDLKVLNLAYNKIN 303

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFL 252
                    L +L+  +LS   L  E     F  LP + ++
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYI 343

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171
           S+ + L  +  + L  N+    +         +L  L+L  +  +      +  + ++  
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPD 385

Query: 172 LDLSYSNFDTF--------YLKLQKPGLANLAE-----NLTNLKALDLINVHISSTVPH- 217
           + LS +   T          + L +  L NL        + +L+ L L     SS     
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 218 TLANLSSLRFSSLSGCRLQG----EFPQEIFQ-LPNLQFLGL 254
           T +   SL    L    LQ     E   ++F+ L +LQ L L
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
              R++ +    N +++P      +    L LS +Y      +    L  L++L+L  S 
Sbjct: 4   FDGRIAFYRFC-NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELG-SQ 58

Query: 179 FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE 238
           +    +            NL NL+ LDL +  I    P     L  L    L  C L   
Sbjct: 59  YTPLTID------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 239 F-PQEIFQ-LPNLQFLGL 254
                 F+ L  L  L L
Sbjct: 113 VLKDGYFRNLKALTRLDL 130

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 14/169 (8%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
           EL L    L  ++        L  L RL L  N      +  +    + L  ++ S +  
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 156 SGQIPAEL---LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTN--LKALDLINVH 210
              +       L+   L    L+ ++                     N  L+ LD+    
Sbjct: 161 F-LVCEHELEPLQGKTLSFFSLAANSL----YSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 211 ISSTVPHTLAN-LSSLRFSSLSGCR-LQGEFPQ--EIFQLPNLQFLGLC 255
            +  +    +N +S  +  SL     + G       I       F GL 
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 190 GLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPN 248
            L  + + L   + L L   +I +    +   L  L+   L          +E F+ LPN
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 249 LQFLGLCGGPLSK 261
           L+ L L    +  
Sbjct: 75  LRILDLGSSKIYF 87

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LS 167
            + +   L  L+ L L +N      IPS        L  L+L +      I     E L 
Sbjct: 139 PSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 168 NLEVLDLSY---SNFDTF-------YLKLQKPGLANLAE----NLTNLKALDLINVHISS 213
           NL+ L+L      +            L++       +       L++LK L ++N  +S 
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 214 TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPL 259
              +    L+SL   +L+   L    P ++F  L  L  L L   P 
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDL 174
           L  L  L LFDN    + IPS      S+L  L L  +     IP+     + +L  LDL
Sbjct: 122 LASLNTLELFDN--WLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178

Query: 175 SYSNF------DTF-------YLKLQKPGLANLAE--NLTNLKALDLINVHISSTVPHTL 219
                        F       YL L    + ++     L  L+ L++   H     P + 
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 220 ANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPLS 260
             LSSL+   +   ++     +  F  L +L  L L    LS
Sbjct: 239 HGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 24/144 (16%)

Query: 119 HLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLSY 176
           + + L+L +NN     I +    +   L  L L ++    QI       L++L  L+L  
Sbjct: 76  NTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 177 SN-----FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLS 231
           +         F               L+ L+ L L N  I S   +    + SL    L 
Sbjct: 133 NWLTVIPSGAFE-------------YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 232 GCRLQGEFPQEIFQ-LPNLQFLGL 254
             +      +  F+ L NL++L L
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNL 203

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 20/132 (15%)

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187
                SE+P  I   S   +LNL ++            L +LEVL L  ++         
Sbjct: 62  TRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS--------- 110

Query: 188 KPGLANLAE----NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEI 243
              +  +       L +L  L+L +  ++         LS LR   L    ++   P   
Sbjct: 111 ---IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 244 FQ-LPNLQFLGL 254
           F  +P+L  L L
Sbjct: 167 FNRVPSLMRLDL 178

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 142 FSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNL 201
            ++ + +  ++   S ++P  +   SN   L+L  +N             A+   +L +L
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQ--------ADTFRHLHHL 101

Query: 202 KALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
           + L L    I          L+SL    L    L    P   F+ L  L+ L L
Sbjct: 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 18/148 (12%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169
                  L ++  + +  N    S       +  +L +L +S++  +  IP +L     L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETL 195

Query: 170 EVLDLSY---SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR 226
             L L +      +   L              + L  L L +  I      +L+ L +LR
Sbjct: 196 NELHLDHNKIQAIELEDLL-----------RYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244

Query: 227 FSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
              L   +L    P  +  L  LQ + L
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 24/185 (12%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
           H+  L L ++ +  S     +   L  LQ+L +  N  +  EIP  +   S L  L +  
Sbjct: 79  HLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKN--HLVEIPPNL--PSSLVELRIHD 132

Query: 153 SYFSGQIPAELLE-LSNLEVLDLSYSNF-------DTF------YLKLQKPGLANLAENL 198
           +    ++P  +   L N+  +++  +           F      YL++ +  L  + ++L
Sbjct: 133 NRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL 191

Query: 199 -TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCG 256
              L  L L +  I +     L   S L    L   +++          LP L+ L L  
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDN 250

Query: 257 GPLSK 261
             LS+
Sbjct: 251 NKLSR 255

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 17/135 (12%)

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187
           ++     +P  I      T L+L  +  S     +   L +L  L L  +          
Sbjct: 41  SDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK------ 92

Query: 188 KPGLANLA-ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ- 245
              +   A   L  L+ L +   H+    P+  ++L  LR   +   R++ + P+ +F  
Sbjct: 93  ---IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIR-KVPKGVFSG 145

Query: 246 LPNLQFLGLCGGPLS 260
           L N+  + + G PL 
Sbjct: 146 LRNMNCIEMGGNPLE 160

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.4 bits (159), Expect = 6e-12
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 31/181 (17%)

Query: 93  HVVELDLASSCLYGSINSTSSL-FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLS 151
            +  L++         N+  SL      L+ L   DN  +   +P    +   L HL++ 
Sbjct: 81  QITVLEITQ-------NALISLPELPASLEYLDACDNRLS--TLPELPAS---LKHLDVD 128

Query: 152 QSYFSGQIPAELLELSNLEVLDLSYSNFDTF--------YLKLQKPGLANLAENLTNLKA 203
            +  +  +P      + LE ++   +              L ++   L  L E   +L+A
Sbjct: 129 NNQLT-MLPELP---ALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEA 184

Query: 204 LDLINVHISSTVPHTLANLSSLRFS----SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPL 259
           LD+    + S +P           +         R+    P+ I  L     + L   PL
Sbjct: 185 LDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 260 S 260
           S
Sbjct: 243 S 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 8e-10
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 35/164 (21%)

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS 175
            +     L L     N S +P  +    ++T L ++Q+     +P      ++LE LD  
Sbjct: 57  LINQFSELQLNRL--NLSSLPDNL--PPQITVLEITQNALI-SLPE---LPASLEYLDAC 108

Query: 176 YSNFDTF--------YLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
            +   T         +L +    L  L E    L+ ++  N  ++  +P    +L  L  
Sbjct: 109 DNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPELPTSLEVLSV 167

Query: 228 SS-----------------LSGCRLQGEFPQEIFQLPNLQFLGL 254
            +                 +S   L+   P    +  + +   +
Sbjct: 168 RNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEI 210

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 24/159 (15%)

Query: 107 SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLEL 166
            IN+  SL Q      +S       +++  SA   + +      +++     +   L+  
Sbjct: 6   PINNNFSLSQNSFYNTISGT-----YADYFSAWDKWEKQALPGENRNEAVSLLKECLI-- 58

Query: 167 SNLEVLDLSYSNFDTF---------YLKLQKPGLANLAENLTNLKALDLINVHISSTVPH 217
           +    L L+  N  +           L++ +  L +L E   +L+ LD  +  +S+ +P 
Sbjct: 59  NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE 117

Query: 218 TLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256
             A+L  L    +   +L    P+       L+++    
Sbjct: 118 LPASLKHLD---VDNNQLT-MLPELP---ALLEYINADN 149

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 17/123 (13%), Positives = 45/123 (36%), Gaps = 17/123 (13%)

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS 175
               L+ LS+ +N      +P        L  L++S +     +PA  +   + E  ++ 
Sbjct: 158 LPTSLEVLSVRNNQLT--FLPELP---ESLEALDVSTNLLE-SLPAVPVRNHHSEETEI- 210

Query: 176 YSNFDTFYLKLQKPGLANLAE---NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG 232
                  + + ++  + ++ E   +L     + L +  +SS +  +L+  ++        
Sbjct: 211 -------FFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 233 CRL 235
              
Sbjct: 264 IYF 266

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 19/163 (11%)

Query: 115 FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL 174
                LQ      +N   +E+P    N    T    + S +    P    E   + V  L
Sbjct: 8   VSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 175 SYSNFDTF-YLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGC 233
                     L+L   GL++L E   +L++L      ++  +P    +L SL   + +  
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLK 124

Query: 234 RLQGEFPQ---------------EIFQLPNLQFLGLCGGPLSK 261
            L    P                E+     L+ + +    L K
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 167

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 22/148 (14%)

Query: 107 SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLEL 166
            +     L     L+ + + +N+    ++P    +   L  +    +    ++P EL  L
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSL--KKLPDLPPS---LEFIAAGNNQLE-ELP-ELQNL 194

Query: 167 SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR 226
             L  +    ++            L  L +   +L+++   N  +       L NL  L 
Sbjct: 195 PFLTAIYADNNS------------LKKLPDLPLSLESIVAGNNILEE--LPELQNLPFLT 240

Query: 227 FSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
                   L+   P     L  L     
Sbjct: 241 TIYADNNLLK-TLPDLPPSLEALNVRDN 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 18/157 (11%)

Query: 104 LYGSINSTSSLF-QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE 162
           +Y   NS   L    + L+ +   +N     E+P  + N   LT +    +     +P  
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGNNIL--EELPE-LQNLPFLTTIYADNNLLK-TLPDL 255

Query: 163 LLELSNLEVLDLSYSNFDTF-----YLKLQKPGLANLAENLTNLKALDLINVHISSTVPH 217
              L  L V D   ++         +L + +   + L+E   NL  L+  +  I S +  
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCD 314

Query: 218 TLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
              +L  L   ++S  +L  E P      P L+ L  
Sbjct: 315 LPPSLEEL---NVSNNKLI-ELPALP---PRLERLIA 344

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 40/167 (23%)

Query: 104 LYGSINSTSSLFQLV-HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE 162
           L  S N  S L +L  +L  L+   N      +     +   L  LN+S +    ++PA 
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASSNEIR--SLCDLPPS---LEELNVSNNKLI-ELPAL 335

Query: 163 LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANL 222
                 LE L  S+++            LA + E   NLK L +    +    P    ++
Sbjct: 336 P---PRLERLIASFNH------------LAEVPELPQNLKQLHVEYNPLRE-FPDIPESV 379

Query: 223 SSLRFSS----------------LSGCRLQGEFPQEIFQLPNLQFLG 253
             LR +S                +    L+ EFP     + +L+   
Sbjct: 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLRMNS 425

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 22/162 (13%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDL 174
           L +L  L LFDN    + IP+      S+L  L L  +     IP+     + +L  LDL
Sbjct: 111 LANLNTLELFDN--RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167

Query: 175 SYSNF------DTF-------YLKLQKPGLANLAE--NLTNLKALDLINVHISSTVPHTL 219
                        F       YL L    L  +     L  L  LDL   H+S+  P + 
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 220 ANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPLS 260
             L  L+   +   ++Q    +  F  L +L  + L    L+
Sbjct: 228 QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 36/173 (20%), Positives = 58/173 (33%), Gaps = 30/173 (17%)

Query: 112 SSLFQ-LVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNL 169
           S  F  +  L+RL L +     S I        S L +LNL+      +IP  L  L  L
Sbjct: 153 SYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKL 209

Query: 170 EVLDLSYSNF-----DTF-------YLKLQKPGLANLAE----NLTNLKALDLINVHISS 213
           + LDLS ++       +F        L + +  +  +      NL +L  ++L + +++ 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

Query: 214 TVPHTLANLSSLRFSSLSG------CRLQGEFPQEI--FQLPNLQFLGLCGGP 258
                   L  L    L        C +       I      N      C  P
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWNCNCDILW-LSWWIKDMAPSNTACCARCNTP 321

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187
              N  E+P  I   +    LNL ++            L +LE+L LS ++  T      
Sbjct: 51  VRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------ 102

Query: 188 KPGLANLA-ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ- 245
              +   A   L NL  L+L +  +++        LS L+   L    ++   P   F  
Sbjct: 103 ---IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 246 LPNLQFLGL 254
           +P+L+ L L
Sbjct: 159 IPSLRRLDL 167

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 142 FSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNL 201
            ++ + +   +     ++P  +   +N  +L+L  +               N  ++L +L
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIK--------VNSFKHLRHL 90

Query: 202 KALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
           + L L   HI +        L++L    L   RL    P   F  L  L+ L L
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWL 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 33/169 (19%), Positives = 68/169 (40%), Gaps = 15/169 (8%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQ-S 153
            L L SS +  +I    + + L  L+ L L DN+   S + S+     S L +LNL    
Sbjct: 54  VLILKSSRI-NTIEG-DAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNP 109

Query: 154 YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS 213
           Y +  + +    L+NL+ L +      +   +            LT+L  L++  + + +
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-------IDFAGLTSLNELEIKALSLRN 162

Query: 214 TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPLSK 261
               +L ++  +   +L          +     L ++++L L    L++
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 11/147 (7%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSN 168
               L    +LQ L L  +  N  E   A  +   L HL+LS ++ S  + +     LS+
Sbjct: 42  GHGDLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSS 99

Query: 169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLRF 227
           L+ L+L  + + T        G+ +L  NLTNL+ L + NV   S +     A L+SL  
Sbjct: 100 LKYLNLMGNPYQTL-------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 228 SSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             +    L+    Q +  + ++  L L
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTL 179

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 9/144 (6%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSN 168
           S+S    L  L+ L+L  N +    + S   N + L  L +       +I       L++
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149

Query: 169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS 228
           L  L++   +   +         +   +++ ++  L L     +  +      LSS+R+ 
Sbjct: 150 LNELEIKALSLRNYQ--------SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 229 SLSGCRLQGEFPQEIFQLPNLQFL 252
            L    L       +        +
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPM 225

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 20/142 (14%)

Query: 131 NFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNF-----DTF--- 182
           +F+ IPS +   + +  L+LS +  +     +L   +NL+VL L  S       D F   
Sbjct: 16  SFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73

Query: 183 ----YLKLQKPGLANLAE----NLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGC 233
               +L L    L++L+      L++LK L+L+     +  V     NL++L+   +   
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 234 RLQGEFPQEIFQ-LPNLQFLGL 254
               E  +  F  L +L  L +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEI 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 26/183 (14%)

Query: 97  LDLASSCLYGSINSTSSL--FQLVHLQRLSLFDNNFNFSEIPSAI--LNFSRLTHLNLSQ 152
            D + + L   +     L   +        L D N + S++ S +  +    +  L++ Q
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTF------------YLKLQ-------KPGLAN 193
            Y    +      L  ++ + +  S                 +L L            + 
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 194 LAENLTNLKALDLINVHISS--TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251
                 +L+ L L   H+ S       L  L +L    +S        P        ++F
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414

Query: 252 LGL 254
           L L
Sbjct: 415 LNL 417

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 17/152 (11%)

Query: 96  ELDLASSCLYGSINSTSSLF-QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY 154
            L L+ + L  S+  T  +   L +L  L +  N F    +P +     ++  LNLS + 
Sbjct: 365 TLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTG 421

Query: 155 FSGQIPAELLELSNLEVLDLSYSNFDTF--------YLKLQKPGLANLAEN--LTNLKAL 204
               +   +     LEVLD+S +N D+F         L + +  L  L +      L  +
Sbjct: 422 IR-VVKTCIP--QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVM 478

Query: 205 DLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236
            +    + S        L+SL+   L      
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 4/164 (2%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
           ++  L + +   +  I        L  L  L +   +    +   ++ +   + HL L  
Sbjct: 124 NLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHL 181

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           S  +  +      LS++  L+L  +N   F          +        +   L +   +
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 213 --STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
               +   +  LS + F   +   L    P E   +  L  +  
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 143 SRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLK 202
                 +     F+  IP+ L   + ++ LDLS++        +    L        NL+
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITY----IGHGDLRAC----ANLQ 53

Query: 203 ALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
            L L +  I++       +L SL    LS   L        F  L +L++L L
Sbjct: 54  VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNL 105

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 42/170 (24%), Positives = 54/170 (31%), Gaps = 22/170 (12%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LS 167
             +S     +L  L L  N    + I +A     + L  L+LS +     +       L 
Sbjct: 48  PAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 168 NLEVLDLSYSNF-----DTF-------YLKLQKPGLANLAE----NLTNLKALDLINVHI 211
            L  L L            F       YL LQ   L  L +    +L NL  L L    I
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

Query: 212 SSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPLS 260
           SS        L SL    L   R+        F+ L  L  L L    LS
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 131 NFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPG 190
               +P  I   +    + L  +  S    A      NL +L L  +        +    
Sbjct: 22  GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR----IDAAA 75

Query: 191 LANLAENLTNLKALDLI-NVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPN 248
                  L  L+ LDL  N  + S  P T   L  L    L  C LQ E    +F+ L  
Sbjct: 76  FT----GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA 130

Query: 249 LQFLGL 254
           LQ+L L
Sbjct: 131 LQYLYL 136

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 28/166 (16%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDL 174
           L  L  L L        E+   +    + L +L L  +     +P +    L NL  L L
Sbjct: 104 LGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL 160

Query: 175 SYSNF-----DTF-------YLKLQKPGLANLAE----NLTNLKALDLINVHISSTVPHT 218
             +         F        L L +  +A++      +L  L  L L   ++S+     
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 219 LANLSSLRFSSLSG------CRLQGEFPQEIFQLPNLQFLGLCGGP 258
           LA L +L++  L+       CR +      + +         C  P
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLP 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 19/154 (12%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170
           S    L  +  + L  N    S I + A     +L+++ ++ +  +  IP  L    +L 
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLT 195

Query: 171 VLDLSY---SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
            L L     +  D   LK            L NL  L L    IS+    +LAN   LR 
Sbjct: 196 ELHLDGNKITKVDAASLK-----------GLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261
             L+  +L  + P  +     +Q + L    +S 
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 21/171 (12%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
           ++  L L ++ +  S  S  +   LV L+RL L  N     E+P  +     L  L + +
Sbjct: 77  NLHTLILINNKI--SKISPGAFAPLVKLERLYLSKN--QLKELPEKM--PKTLQELRVHE 130

Query: 153 SYFSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVH 210
           +  + ++   +   L+ + V++L  +N       L+  G+ N A + +  L  + + + +
Sbjct: 131 NEIT-KVRKSVFNGLNQMIVVELG-TN------PLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 211 ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPLS 260
           I++       +L+ L    L G ++  +      + L NL  LGL    +S
Sbjct: 183 ITTIPQGLPPSLTELH---LDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 25/177 (14%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            ++ ++L ++ L  S     +   +  L  + + D   N + IP  +     LT L+L  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQGL--PPSLTELHLDG 201

Query: 153 SYFSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVH 210
           +  + ++ A  L+ L+NL  L LS+++            + N +  N  +L+ L L N  
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSISA---------VDNGSLANTPHLRELHLNNNK 251

Query: 211 ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF-------QLPNLQFLGLCGGPLS 260
           +   VP  LA+   ++   L    +        F       +  +   + L   P+ 
Sbjct: 252 LVK-VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 17/135 (12%)

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187
           ++    ++P  +        L+L  +  +     +   L NL  L L  +          
Sbjct: 39  SDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK------ 90

Query: 188 KPGLANLA-ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ- 245
              ++  A   L  L+ L L    +          L  LR   +    +  +  + +F  
Sbjct: 91  ---ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEIT-KVRKSVFNG 143

Query: 246 LPNLQFLGLCGGPLS 260
           L  +  + L   PL 
Sbjct: 144 LNQMIVVELGTNPLK 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 97  LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYF 155
            D+        +        L + + ++  ++     ++P+A+L +F ++  LNL+    
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 156 SGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
             +I          ++ L + ++               ++ +N+  L  L L    +SS 
Sbjct: 82  E-EIDTYAFAYAHTIQKLYMGFNAIRYL--------PPHVFQNVPLLTVLVLERNDLSSL 132

Query: 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
                 N   L   S+S   L+     + FQ   +LQ L L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL 172

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 22/155 (14%)

Query: 112 SSLFQ-LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170
              FQ    LQ L L  N    + +  +      L H N+S +  S      L     +E
Sbjct: 158 DDTFQATTSLQNLQLSSNRL--THVDLS--LIPSLFHANVSYNLLS-----TLAIPIAVE 208

Query: 171 VLDLSYSNFDTF---------YLKLQKPGLANLA--ENLTNLKALDLINVHISSTVPHTL 219
            LD S+++ +            LKLQ   L + A   N   L  +DL    +   + H  
Sbjct: 209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 268

Query: 220 ANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             +  L    +S  RL          +P L+ L L
Sbjct: 269 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 124 SLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFY 183
           ++      +  I S +        +++           E + L+N +++    S      
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61

Query: 184 LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEI 243
                   A L ++   ++ L+L ++ I     +  A   +++   +    ++   P  +
Sbjct: 62  --------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 112

Query: 244 FQ-LPNLQFLGLCG 256
           FQ +P L  L L  
Sbjct: 113 FQNVPLLTVLVLER 126

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLEL 166
           +  T+ L     L  + L  N     +I         RL  L +S +     +      +
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 167 SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR 226
             L+VLDLS+++            +         L+ L L +  I +    T   L +L 
Sbjct: 295 PTLKVLDLSHNHLLH---------VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345

Query: 227 FS 228
            S
Sbjct: 346 LS 347

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 33/169 (19%), Positives = 54/169 (31%), Gaps = 8/169 (4%)

Query: 92  GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS--AILNFSRLTHLN 149
           G  +E  L        +   + + + + L+RL++         +     +L  S L  L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 150 LSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINV 209
           L     +G  P  LLE +  ++  L+  N            L         LK L +   
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL--KPGLKVLSIAQA 159

Query: 210 HISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEI----FQLPNLQFLGL 254
           H  +     +    +L    LS     GE          + P LQ L L
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 39/168 (23%), Positives = 56/168 (33%), Gaps = 20/168 (11%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNF--NFSEIPSAILN-FSRLTHLN 149
            +  L +A +           +F    L  L L DN        I +     F  L  L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFP--ALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 150 LSQ---SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL 206
           L        SG   A       L+ LDLS+++       L+    A   +  + L +L+L
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNS-------LRDAAGAPSCDWPSQLNSLNL 260

Query: 207 INVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
               +        A LS L    LS  RL    P    +LP +  L L
Sbjct: 261 SFTGLKQVPKGLPAKLSVL---DLSYNRLD-RNPSPD-ELPQVGNLSL 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 19/166 (11%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLEL---SNLEVLDLS 175
            L+R+    +   F++I    +    L  L +  +    +I    L +   S L+ L L 
Sbjct: 48  LLKRVDTEADLGQFTDI----IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 176 YSNFDTFYLKLQKPGLANLAEN-LTNLKALDLINVHISSTVPHTLA----NLSSLRFSSL 230
                   L++       L E    +L  L+L NV  ++               L+  S+
Sbjct: 104 -------NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 231 SGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPEEDPH 276
           +         +++   P L  L L   P   +     A  P + P 
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 3e-10
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 29/176 (16%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
             ++ +L       S+    +  +L  + ++   ++  +   +   I     +T L L+ 
Sbjct: 22  ETIKDNLKKK----SVTDAVTQNELNSIDQIIANNS--DIKSV-QGIQYLPNVTKLFLNG 74

Query: 153 SYFSGQIP--AELLELSNLEVLDLSY------SNFDTF----YLKLQKPGLANLA--ENL 198
           +    ++     L  L NL  L L        S+         L L+  G++++    +L
Sbjct: 75  N----KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 130

Query: 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             L++L L N  I+      L+ L+ L   SL   ++       +  L  LQ L L
Sbjct: 131 PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYL 182

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 9e-09
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 19/147 (12%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I             + +L   +   ++  +     + +  +  + S     +   +  L 
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSV--TDAVT-QNELNSIDQIIANNSDIK-SVQG-IQYLP 65

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
           N+  L L+ +             +  L  NL NL  L L    I       L +L  L+ 
Sbjct: 66  NVTKLFLNGNKLTD---------IKPL-TNLKNLGWLFLDENKIKDLSS--LKDLKKLKS 113

Query: 228 SSLSGCRLQGEFPQEIFQLPNLQFLGL 254
            SL    +       +  LP L+ L L
Sbjct: 114 LSLEHNGISD--INGLVHLPQLESLYL 138

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I   SSL  L  L+ LSL  N    S+I + +++  +L  L L  +  +  I   L  L+
Sbjct: 99  IKDLSSLKDLKKLKSLSLEHNGI--SDI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLT 153

Query: 168 NLEVLDLSY------SNFDTF----YLKLQKPGLANLA--ENLTNLKALDLINVHISSTV 215
            L+ L L                   L L K  +++L     L NL  L+L +    +  
Sbjct: 154 KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213

Query: 216 PHTLANLSSL 225
            +  +NL   
Sbjct: 214 INHQSNLVVP 223

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSN 168
           + +S  +L  LQ L +           +     S L  L L  + F  Q+       L+N
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLAN 104

Query: 169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL-ANLSSLRF 227
           LEVL L+  N D   L        N  + LT+L+ L L + +I    P +   N+     
Sbjct: 105 LEVLTLTQCNLDGAVLS------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 228 SSLSGCRLQGEFPQEIF---QLPNLQFLGLCGGPLSKKCNNSEASPPEEDPH 276
             L+  +++    +E     Q  +   L L    L              +P 
Sbjct: 159 LDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 15/170 (8%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLS 151
           + +      +      N T    +   ++   L  +      +  ++  +F+ L  L L+
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLA 307

Query: 152 QSYFSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH 210
           Q+  + +I       L++L  L+LS +   +          + + ENL  L+ LDL   H
Sbjct: 308 QNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID--------SRMFENLDKLEVLDLSYNH 358

Query: 211 ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPL 259
           I +    +   L +L+  +L   +L+   P  IF  L +LQ + L   P 
Sbjct: 359 IRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 33/172 (19%), Positives = 51/172 (29%), Gaps = 9/172 (5%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L L    L G++ S +    L  L+ L L DNN    +  S  LN  R   L+L+ +  
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 156 SGQIPAEL---LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
              I  E     +  +  +L LS                       T++  LDL      
Sbjct: 167 K-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 213 STVPHTLANLSSLR-----FSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPL 259
            ++     +  +         S S                N  F GL    +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDL 174
           L  L+ L +  ++          L +   ++HL L        +    ++  S++E L+L
Sbjct: 173 LTFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234
             ++ DTF+      G  N        + + + +  +   V   L  +S L     S  +
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQ 288

Query: 235 LQGEFPQEIFQ-LPNLQFLGLCGGPL 259
           L+   P  IF  L +LQ + L   P 
Sbjct: 289 LKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 22/169 (13%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSY 154
            L+L     Y ++  TS    L  LQ L +  N   F++I        + L  L +  S 
Sbjct: 128 FLNL-LGNPYKTLGETSLFSHLTKLQILRV-GNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 155 FSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH--- 210
                  + L+ + N+  L L                L    +  ++++ L+L +     
Sbjct: 186 LQ-SYEPKSLKSIQNVSHLILHMKQHILL--------LEIFVDVTSSVECLELRDTDLDT 236

Query: 211 -----ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
                +S+   ++L    + R   ++   L  +  + + Q+  L  L  
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEF 284

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 110 STSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLE-LS 167
           S S L + V+LQ L L  N    + I   +  +   L HL+LS +Y S  + +   + LS
Sbjct: 68  SNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS 124

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLA------------------ENLTNLKALDLINV 209
           +L  L+L  + + T         L  L                     LT L+ L++   
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 210 HISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPLS 260
            + S  P +L ++ ++    L   +      +       +++ L L    L 
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 131 NFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPG 190
           + + IPS +     +  L+LS +  +    ++L    NL+ L L+ +  +T         
Sbjct: 42  SLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE------- 92

Query: 191 LANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNL 249
             +   +L +L+ LDL   ++S+        LSSL F +L G   +      +F  L  L
Sbjct: 93  -EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 250 QFLGL 254
           Q L +
Sbjct: 152 QILRV 156

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 9/157 (5%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLS 175
           L  L  L+L  N +      S   + ++L  L +       +I  +    L+ LE L++ 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 176 YSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRL 235
            S+  +     +   L ++     N+  L L        +   +   SS+    L    L
Sbjct: 183 ASDLQS----YEPKSLKSI----QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 236 QGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPE 272
                 E+        +        K  + S     +
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 22/146 (15%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSY 154
           EL++ +S L        SL  + ++  L L         +    +   S +  L L  + 
Sbjct: 178 ELEIDASDL--QSYEPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTD 233

Query: 155 FSG----QIPA----ELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL 206
                  ++       L++      + ++  +            +  L   ++ L  L+ 
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESL---------FQVMKLLNQISGLLELEF 284

Query: 207 INVHISSTVPHTLANLSSLRFSSLSG 232
               + S        L+SL+   L  
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 118 VHLQRLSLFDNNFNFSEIPS--AILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDL 174
            +   L L  NN   S + +       + L  L LS ++ +  I +E    + NL  LDL
Sbjct: 39  SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234
           S ++  T            L  +L  L+ L L N HI     +   +++ L+   LS  +
Sbjct: 96  SSNHLHTLD--------EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 235 LQGEFPQEIFQ----LPNLQFLGL 254
           +   FP E+ +    LP L  L L
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDL 170

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 10/118 (8%)

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLD 173
            + +L+ L L  N+     +   +  +   L  L L  ++    +     E ++ L+ L 
Sbjct: 86  PVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

Query: 174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLS 231
           LS +    F        L      L  L  LDL +  +       L  L +   + L 
Sbjct: 143 LSQNQISRF-----PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 23/162 (14%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
           + +++    S    ++  T +   L  +  LS F      + I   +   + L  L L  
Sbjct: 20  NAIKIAAGKS----NVTDTVTQADLDGITTLSAFGT--GVTTI-EGVQYLNNLIGLELKD 72

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           +  +   P  L  L+ +  L+LS +             ++ +   L ++K LDL +  I+
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLKN---------VSAI-AGLQSIKTLDLTSTQIT 120

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
              P  LA LS+L+   L   ++       +  L NLQ+L +
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 15/118 (12%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I + S L  L +LQ LS+ +     S++ + + N S+LT L    +  S  I   L  L 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQV--SDL-TPLANLSKLTTLKADDNKIS-DISP-LASLP 195

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL 225
           NL  + L  +             L     N +NL  + L N  I++       NL   
Sbjct: 196 NLIEVHLKNNQISDV------SPL----ANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 23/126 (18%), Positives = 33/126 (26%), Gaps = 20/126 (15%)

Query: 159 IPAELLELSNLEVLDLSYSNF------DTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
               L    NL  L +                             L  L+ L ++   + 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLR-------------GLGELRNLTIVKSGLR 69

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPE 272
              P        L   +LS   L+     +  Q  +LQ L L G PL   C        E
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 273 EDPHSE 278
           E+    
Sbjct: 129 EEGLGG 134

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS--GQIPAELLELSNLEVLD 173
           ++     L   +N      +     + + L  L L  +      +I     ++ +L+ LD
Sbjct: 322 KISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGC 233
           +S +        +             +L +L++ +  ++ T+   L     ++   L   
Sbjct: 381 ISQN-------SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 234 RLQGEFPQEIFQLPNLQFLGL 254
           +++   P+++ +L  LQ L +
Sbjct: 432 KIK-SIPKQVVKLEALQELNV 451

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 5/169 (2%)

Query: 95  VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS--AILNFSRLTHLNLSQ 152
           ++  L  +     ++  + L     L  L+L +    ++       ++  + + + ++S 
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
               GQ+     + S   +  LS     +      +  +       +N+   +       
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE---IFSNMNIKNFTVSGTR 313

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261
                  + +S       S   L     +    L  L+ L L    L +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLSYS 177
               L++  N  +     S IL+ S+L  L +S +     +   + +    LE LDLS++
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 178 NFDTFYLKLQKPGLANL-AENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRL 235
                        L  +      NLK LDL      +  +     N+S L+F  LS   L
Sbjct: 80  K------------LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 236 QGEFPQEIFQLPNLQFLGLCGGPLSKK 262
           +      I  L   + L + G    +K
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEK 154

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 12/127 (9%)

Query: 107 SINSTSSLF-QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE 165
            ++  + +  Q+  LQ+L +  N+ ++ E          L  LN+S +  +  I   L  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 166 LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL 225
              ++VLDL  +   +         +      L  L+ L++ +  + S        L+SL
Sbjct: 420 PPRIKVLDLHSNKIKS---------IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 226 RFSSLSG 232
           +   L  
Sbjct: 471 QKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 25/152 (16%)

Query: 116 QLVHLQRLSLFDNNF-NFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLD 173
            L  L+ L L  N     S+I         L  L++SQ+  S            +L  L+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 174 LSY-----SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS 228
           +S      + F                     +K LDL +  I S +P  +  L +L+  
Sbjct: 406 MSSNILTDTIFRCL---------------PPRIKVLDLHSNKIKS-IPKQVVKLEALQEL 449

Query: 229 SLSGCRLQGEFPQEIFQ-LPNLQFLGLCGGPL 259
           +++  +L+   P  IF  L +LQ + L   P 
Sbjct: 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176
            V+L+ L L  N F+   I     N S+L  L LS ++        +  L+  +VL +  
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 177 SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236
             +          GL +   N  +L  +   N      +  ++  +++L  S++      
Sbjct: 149 ETYGEKE---DPEGLQDF--NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 237 GEFPQEIFQLPNLQFL 252
            +    +  L  LQ  
Sbjct: 204 NKCSYFLSILAKLQTN 219

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 18/165 (10%)

Query: 101 SSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIP 160
                      +  F    +Q + L ++    S +   +   S+L +L+L     S  I 
Sbjct: 76  RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135

Query: 161 AELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLI------NVHISST 214
             L + SNL  L+LS  +         +  L  L  + + L  L+L         H+   
Sbjct: 136 NTLAKNSNLVRLNLSGCS------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189

Query: 215 VPHTLANLSSLRFSSLSGCR--LQGEFPQEIFQ-LPNLQFLGLCG 256
           V H    ++ L    LSG R  LQ      + +  PNL  L L  
Sbjct: 190 VAHVSETITQLN---LSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 31/195 (15%)

Query: 92  GHVVELDLASSCLYGSINSTSSLFQLV----HLQRLSLFDNNFNFSEIPSAILNFSRLTH 147
            H     +    L  S+   S+L  ++     LQ LSL     +   I + +   S L  
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVR 146

Query: 148 LNLSQ-SYFSGQIPAELLE-LSNLEVLDLSYSNFDTF---------------YLKLQK-- 188
           LNLS  S FS      LL   S L+ L+LS+    T                 L L    
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 189 -----PGLANLAENLTNLKALDLIN-VHISSTVPHTLANLSSLRFSSLSGC-RLQGEFPQ 241
                  L+ L     NL  LDL + V + +        L+ L+  SLS C  +  E   
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266

Query: 242 EIFQLPNLQFLGLCG 256
           E+ ++P L+ L + G
Sbjct: 267 ELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 10/147 (6%)

Query: 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIP-AELLELSNLEV 171
             ++L   + L    +    +  P           +           P AE      ++ 
Sbjct: 38  RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLS 231
           +DLS S  +          L  +    + L+ L L  + +S  + +TLA  S+L   +LS
Sbjct: 98  MDLSNSVIEV-------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 232 GCR-LQGEFPQEIFQ-LPNLQFLGLCG 256
           GC        Q +      L  L L  
Sbjct: 151 GCSGFSEFALQTLLSSCSRLDELNLSW 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 38/160 (23%), Positives = 54/160 (33%), Gaps = 18/160 (11%)

Query: 104 LYGSINSTSSL---FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIP 160
           L       + L     L  L  L L  N      +P        LT L++S +  +  +P
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLP 116

Query: 161 AELLE-LSNLEVLDLSYSNFDTFYLKLQK-PGLANLAENLTNLKALDLINVHISSTVPHT 218
              L  L  L+ L L   N      +L+  P    L      L+ L L N +++      
Sbjct: 117 LGALRGLGELQELYLKG-N------ELKTLP--PGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 219 LANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGP 258
           L  L +L    L    L    P+  F    L F  L G P
Sbjct: 168 LNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 14/140 (10%)

Query: 118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYS 177
                L L +N        + ++ ++RLT LNL ++  + ++  +   L  L  LDLS++
Sbjct: 31  KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELT-KLQVDG-TLPVLGTLDLSHN 87

Query: 178 NFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG 237
              +         L  L + L  L  LD+    ++S     L  L  L+   L G  L+ 
Sbjct: 88  QLQS---------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137

Query: 238 EFPQEIFQ-LPNLQFLGLCG 256
             P  +    P L+ L L  
Sbjct: 138 TLPPGLLTPTPKLEKLSLAN 157

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 21/158 (13%)

Query: 104 LYGSINSTSSLF-----QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ 158
           L+ S N   +           L +L+L       +++         L  L+LS +     
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQ-VDGTLPVLGTLDLSHNQLQ-S 91

Query: 159 IPAELLELSNLEVLDLSYSNFDTFYLKLQK-PGLANLAENLTNLKALDLINVHISSTVPH 217
           +P     L  L VLD+S+ N      +L   P        L  L+ L L    + +  P 
Sbjct: 92  LPLLGQTLPALTVLDVSF-N------RLTSLP--LGALRGLGELQELYLKGNELKTLPPG 142

Query: 218 TLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
            L     L   SL+   L  E P  +   L NL  L L
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 22/140 (15%)

Query: 118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYS 177
           V+  + +L       + +P  +      T L+LS++       A L+  + L  L+L  +
Sbjct: 15  VNCDKRNL-------TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 178 NFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG 237
                           +   L  L  LDL +  + S +P     L +L    +S  RL  
Sbjct: 66  ELTKL----------QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT- 113

Query: 238 EFPQEIF-QLPNLQFLGLCG 256
             P      L  LQ L L G
Sbjct: 114 SLPLGALRGLGELQELYLKG 133

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 29/176 (16%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
             ++ +L       S+    +  +L  + ++   +++     +   I     +T L L+ 
Sbjct: 25  ETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDI--KSV-QGIQYLPNVTKLFLNG 77

Query: 153 SYFSGQIP--AELLELSNLEVLDLSY------SNFDTF----YLKLQKPGLANLA--ENL 198
           +    ++     L  L NL  L L        S+         L L+  G++++    +L
Sbjct: 78  N----KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             L++L L N  I+      L+ L+ L   SL   ++       +  L  LQ L L
Sbjct: 134 PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 19/148 (12%)

Query: 107 SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLEL 166
            I    S        + +L   +   ++        + +  +  + S     +   +  L
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSV--TDA-VTQNELNSIDQIIANNSDIK-SVQG-IQYL 67

Query: 167 SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR 226
            N+  L L+ +             +  L  NL NL  L L    +       L +L  L+
Sbjct: 68  PNVTKLFLNGNKLTD---------IKPL-ANLKNLGWLFLDENKVKDLSS--LKDLKKLK 115

Query: 227 FSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             SL    +       +  LP L+ L L
Sbjct: 116 SLSLEHNGISDING--LVHLPQLESLYL 141

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           +   SSL  L  L+ LSL  N    S+I + +++  +L  L L  +  +  I   L  L+
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGI--SDI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLT 156

Query: 168 NLEVLDLSY------SNFDTF----YLKLQKPGLANLA--ENLTNLKALDLINVHISSTV 215
            L+ L L                   L L K  +++L     L NL  L+L +    +  
Sbjct: 157 KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216

Query: 216 PHTLANLSSLR 226
            +  +NL    
Sbjct: 217 INHQSNLVVPN 227

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLD 173
            L HL  L L  N      +        S L  L   ++  +  +    +  L  L+ L+
Sbjct: 74  SLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 130

Query: 174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS----S 229
           ++       +  +Q   L     NLTNL+ LDL +  I S     L  L  +        
Sbjct: 131 VA-------HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 230 LSGCRLQGEFPQEIFQLPNLQFLGL 254
           LS   +        F+   L+ L L
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLKELAL 207

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 21/160 (13%)

Query: 104 LYGSINSTSSL----FQ-LVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSG 157
           L  S N    L    F     LQ L L         I   A  + S L+ L L+ +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQ- 89

Query: 158 QIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TV 215
            +       LS+L+ L    +N  +               +L  LK L++ +  I S  +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASL--------ENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGL 254
           P   +NL++L    LS  ++Q        + L  +  L L
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 20/129 (15%)

Query: 131 NFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPG 190
           NF +IP  +       +L+LS +               L+VLDLS               
Sbjct: 18  NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------------ 63

Query: 191 LANLAE----NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ- 245
           +  + +    +L++L  L L    I S      + LSSL+        L           
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH 122

Query: 246 LPNLQFLGL 254
           L  L+ L +
Sbjct: 123 LKTLKELNV 131

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 16/141 (11%)

Query: 118 VHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLS 175
              + L L  N      + S +  +F  L  L+LS+      I     + LS+L  L L+
Sbjct: 28  FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 176 YSNFDTFYLKLQK-PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234
             N       +Q           L++L+ L  +  +++S     + +L +L+  +++   
Sbjct: 85  G-N------PIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 235 LQGEFPQEIF-QLPNLQFLGL 254
           +Q     E F  L NL+ L L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDL 156

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLS 175
           L  L+ L++  N     ++P    N + L HL+LS +     I    L  L  + +L+LS
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181

Query: 176 YSNFDTFYLKLQKPGLANL---AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG 232
                   L L    +  +   A     LK L L    + S        L+SL+   L  
Sbjct: 182 --------LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 141 NFSRLTHLNLSQSYFS-GQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLT 199
             S +  L L  S  + G++     E   LE L        +         +ANL   L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---------IANL-PKLN 64

Query: 200 NLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG-EFPQEIFQLPNLQFLGLCGGP 258
            LK L+L +  +S  +        +L   +LSG +++     + + +L NL+ L L    
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

Query: 259 LSKKCN 264
           ++   +
Sbjct: 125 VTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 14/138 (10%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
            ++ L L ++  N  ++      F  L  L+      +  I A L +L+ L+ L+LS + 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNR 75

Query: 179 FDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSG---CR 234
                      GL  LAE   NL  L+L    I   +    L  L +L+   L       
Sbjct: 76  VSG--------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127

Query: 235 LQGEFPQEIFQLPNLQFL 252
           L          LP L +L
Sbjct: 128 LNDYRENVFKLLPQLTYL 145

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 7/165 (4%)

Query: 96  ELDLA-SSCLYGSINSTSSLFQ-LVHLQRLSLFD--NNFNFSEIPSAILNFSRLTHLNLS 151
           ELDL  S     S +  S        L  L++    +  +FS +   +     L  L L+
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 152 QSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI 211
           ++    ++   L     LE L       +         GL+        L+ L      +
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS--GLSVALSGCKELRCLSGFWDAV 277

Query: 212 SSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ-LPNLQFLGLC 255
            + +P   +  S L   +LS   +Q     ++    P LQ L + 
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 21/152 (13%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLV----HLQRLSLFDNNFNFSE--IPSAILNFSRLT 146
            + E+ L    +     +   L  +     + + L L  +   FS   + +       L 
Sbjct: 106 WLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVL-SSCEGFSTDGLAAIAATCRNLK 159

Query: 147 HLNLSQSYFSGQIPAELLELS----NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLK 202
            L+L +S         L        +L  L++S         ++    L  L     NLK
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC-----LASEVSFSALERLVTRCPNLK 214

Query: 203 ALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234
           +L L        +   L     L      G  
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 28/156 (17%)

Query: 120 LQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ---------------SYFSGQIPAELL 164
             R  +F  N       + I  F ++  + L                  Y    I A   
Sbjct: 43  WCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS 102

Query: 165 ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINV-HISSTVPHTLA-NL 222
             + LE + L                L  +A++  N K L L +    S+     +A   
Sbjct: 103 SYTWLEEIRLKRMVVTD-------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155

Query: 223 SSLRFSSLSGCRLQGEFPQEIFQL----PNLQFLGL 254
            +L+   L    +       +        +L  L +
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 141 NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTN 200
           +   L  L+LS                 +E+L ++++            G+ ++     +
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-------DSDLGMHHVLSGCDS 482

Query: 201 LKALDLIN-VHISSTVPHTLANLSSLRFSSLSGCRL 235
           L+ L++ +       +    + L ++R   +S C +
Sbjct: 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 16/146 (10%)

Query: 95  VELDLASSCLYGSINSTSSLFQ-LVHLQRLSLFD-----NNFNFSEIPSAILNFSRLTHL 148
             L L +  +   +   ++L Q    L+ L             +S +  A+     L  L
Sbjct: 214 KSLKL-NRAV--PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 149 NLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLIN 208
           +         +PA     S L  L+LSY+   +         L  L      L+ L +++
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-------YDLVKLLCQCPKLQRLWVLD 323

Query: 209 VHISSTVPHTLANLSSLRFSSLSGCR 234
               + +    +    LR   +    
Sbjct: 324 YIEDAGLEVLASTCKDLRELRVFPSE 349

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 140 LNFSRLTHLNLSQSYFS-GQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL 198
              + +  L L     + G+I     E  NLE L L      +         ++NL   L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---------VSNL-PKL 70

Query: 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG-EFPQEIFQLPNLQFLGLCGG 257
             LK L+L    I   +      L +L   +LSG +L+     + + +L  L+ L L   
Sbjct: 71  PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

Query: 258 PLSKKCN 264
            ++   +
Sbjct: 131 EVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 120 LQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNF 179
           ++ L L +   N  +I      F  L  L+L        + + L +L  L+ L+LS +  
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRI 83

Query: 180 DTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSG---CRL 235
                     GL  LAE L NL  L+L    +   +    L  L  L+   L       L
Sbjct: 84  FG--------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 236 QGEFPQEIFQLPNLQFL 252
                     LP L +L
Sbjct: 136 NDYRESVFKLLPQLTYL 152

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172
              +   ++ L L   +   + +   +     +THL+LS +     +P  L  L  LEVL
Sbjct: 436 LKMEYADVRVLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLS 231
             S +  +         G+     NL  L+ L L N  +        L +   L   +L 
Sbjct: 492 QASDNALENV------DGV----ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 232 G---CRLQGEFPQEIFQLPNLQFL 252
           G   C+ +G   +    LP++  +
Sbjct: 542 GNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 38/224 (16%), Positives = 57/224 (25%), Gaps = 43/224 (19%)

Query: 68  ATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFD 127
                   N              +    E  L           +++  QL          
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL-----FRCEL 356

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-------------LSNLEVLD- 173
           +    + + S + +   L  L     +    I   +                S L+ +D 
Sbjct: 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 174 -------------------LSYSNFDTFYLKLQKPGLANLA--ENLTNLKALDLINVHIS 212
                              L     D   L L    L  L   E L  +  LDL +  + 
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR 476

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256
           + +P  LA L  L     S   L  E    +  LP LQ L LC 
Sbjct: 477 A-LPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCN 517

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 141 NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTN 200
           N  R   L+L        I      L   + +D S  N      +++K  L      L  
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSD-N------EIRK--LDGF-PLLRR 65

Query: 201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ--GEFPQEIFQLPNLQFLGLCGGP 258
           LK L + N  I          L  L    L+   L   G+    +  L +L +L +   P
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNP 124

Query: 259 LSKKCN 264
           ++ K +
Sbjct: 125 VTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 22/152 (14%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ---SYFSGQIPAELL 164
           I   +     V  + L L         I +      +   ++ S        G       
Sbjct: 9   IEQAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDG-----FP 61

Query: 165 ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLS 223
            L  L+ L ++ +                L + L +L  L L N  +        LA+L 
Sbjct: 62  LLRRLKTLLVNNNRICR--------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 224 SLRFSSLSG---CRLQGEFPQEIFQLPNLQFL 252
           SL +  +        +      I+++P ++ L
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 24/162 (14%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
           + V+ +L       S+    S  +L  +Q  +  ++N     + + +  F+ L  L+LS 
Sbjct: 20  NAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNI--QSL-AGMQFFTNLKELHLSH 72

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           +  S  +   L +L+ LE L ++ +            G+ +       L  L L N  + 
Sbjct: 73  NQIS-DLSP-LKDLTKLEELSVNRNRLKNL------NGIPSA-----CLSRLFLDNNELR 119

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
            T    L +L +L   S+   +L  +    +  L  L+ L L
Sbjct: 120 DTDS--LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDL 157

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 20/148 (13%)

Query: 107 SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLEL 166
            IN       L +  + +L   +   +++  +    S + + N   S     +   +   
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSV--TDL-VSQKELSGVQNFNGDNSNIQ-SLAG-MQFF 62

Query: 167 SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR 226
           +NL+ L LS++             L+ L ++LT L+ L +    + +      A LS L 
Sbjct: 63  TNLKELHLSHNQISD---------LSPL-KDLTKLEELSVNRNRLKNLNGIPSACLSRL- 111

Query: 227 FSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
              L    L+      +  L NL+ L +
Sbjct: 112 --FLDNNELRD--TDSLIHLKNLEILSI 135

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 24/133 (18%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSG-QIP--AELL 164
           I+  S L  L  L+ LS+  N          + N + +    LS+ +    ++     L+
Sbjct: 75  ISDLSPLKDLTKLEELSVNRNR---------LKNLNGIPSACLSRLFLDNNELRDTDSLI 125

Query: 165 ELSNLEVLDLSY------SNFDTF----YLKLQKPGLANLA--ENLTNLKALDLINVHIS 212
            L NLE+L +                   L L    + N      L  +  +DL      
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185

Query: 213 STVPHTLANLSSL 225
           +        L   
Sbjct: 186 NEPVKYQPELYIT 198

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 16/156 (10%)

Query: 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176
               +++ L        ++ + +       HL LS +    +I + L  + NL +L L  
Sbjct: 22  ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGR 79

Query: 177 SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236
           +             + NL      L+ L +    I+S     +  L +LR   +S  ++ 
Sbjct: 80  NLIKK---------IENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKIT 128

Query: 237 --GEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASP 270
             GE   ++  L  L+ L L G PL      + A+ 
Sbjct: 129 NWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 117 LVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDL 174
           L ++ R+ +  +     ++ S +  N S++TH+ +  +     I  + L+ L  L+ L +
Sbjct: 54  LPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLI-NVHISSTVPHTLANLSSLRFS-SLSG 232
             +    F      P L  +  +      L++  N +++S   +    L +   +  L  
Sbjct: 113 FNTGLKMF------PDLTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 233 CRLQGEFPQEIFQLPNLQFLGL 254
                      F    L  + L
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYL 186

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 27/183 (14%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLS 151
           ++  + ++       + S  S + L  +  + + +   N + I   A+     L  L + 
Sbjct: 56  NISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIF 113

Query: 152 QSYFSGQIPAE--LLELSNLEVLDLSYSNF--------------DTFYLKLQKPGLANLA 195
            +      P    +       +L+++ + +              +T  LKL   G  ++ 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172

Query: 196 E---NLTNLKALDLI-NVHISSTVPHTLANL-SSLRFSSLSGCRLQGEFPQEIFQ-LPNL 249
               N T L A+ L  N +++         + S      +S   +    P +  + L  L
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231

Query: 250 QFL 252
              
Sbjct: 232 IAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 9/136 (6%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLT-HLNLSQSY 154
            L +  +         + ++       L + DN +  S   +A       T  L L  + 
Sbjct: 109 FLGI-FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 155 FSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214
           F+  +       + L+ + L+ + + T    + K     +    + L   D+    +++ 
Sbjct: 168 FT-SVQGYAFNGTKLDAVYLNKNKYLT---VIDKDAFGGVYSGPSLL---DVSQTSVTAL 220

Query: 215 VPHTLANLSSLRFSSL 230
               L +L  L   + 
Sbjct: 221 PSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 18/134 (13%)

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLSYSNFDTFYLKL 186
              +   IPS   +      L L +++    IP+     L N+  + +S          L
Sbjct: 19  TCKDIQRIPSLPPS---TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV------TL 68

Query: 187 QKPGLANLA-ENLTNLKALDLI-NVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF 244
           Q+  L + +  NL+ +  +++    +++   P  L  L  L+F  +    L+  FP    
Sbjct: 69  QQ--LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK 125

Query: 245 --QLPNLQFLGLCG 256
                    L +  
Sbjct: 126 VYSTDIFFILEITD 139

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 25/170 (14%), Positives = 45/170 (26%), Gaps = 5/170 (2%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNF--SRLTHLNL 150
            +  + L        +   S L +   L  ++L      +         F    + +LN+
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 151 SQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH 210
                + +I  E    S   +  L   +         K  L ++      +    L    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV---FAEMNIKMLSISD 340

Query: 211 ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260
                     + SS  F + +         Q    L  LQ L L    L 
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 25/174 (14%)

Query: 104 LYGSINSTSSL----FQLVHLQRLSLFDNNFN-FSEIPSAIL--NFSRLTHLNLSQSYFS 156
           L    N   +         ++  L   D + N  +             +  LNLS +  +
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 157 GQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP 216
           G +   L     ++VLDL  +   +         +     +L  L+ L++ +  + S   
Sbjct: 442 GSVFRCLP--PKVKVLDLHNNRIMS---------IPKDVTHLQALQELNVASNQLKSVPD 490

Query: 217 HTLANLSSLRFSSLSG------CRLQGEFPQEIFQLPN-LQFLGLCGGPLSKKC 263
                L+SL++  L        C       + I +    ++       P S KC
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ-SYFSGQIPAELLELSNLEVLDL 174
               L+ L +  N      I       + L HL+LS   +    +  E   L+ L  L L
Sbjct: 98  FNQDLEYLDVSHN--RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153

Query: 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR 226
           S +       K ++  L  +A    +   LDL++ HI      +L   ++  
Sbjct: 154 SAA-------KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 14/145 (9%)

Query: 117 LVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDL 174
              L+++ +  N+     I +    N  +L  + + ++     I  E  + L NL+ L +
Sbjct: 53  FGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLI-NVHISSTVPHTLANLSS-LRFSSLSG 232
           S +           P +  +  +      LD+  N++I +   ++   LS       L+ 
Sbjct: 112 SNTGIKHL------PDVHKI--HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 233 CRLQGEFPQEIFQLPNLQFLGLCGG 257
             +Q E     F    L  L L   
Sbjct: 164 NGIQ-EIHNSAFNGTQLDELNLSDN 187

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 20/140 (14%)

Query: 119 HLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLSY 176
           +   L           I   A   F  L  + +SQ+     I A++   L  L  + +  
Sbjct: 31  NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 177 SNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRL 235
           +N       L    +   A +NL NL+ L + N  I         +        +     
Sbjct: 89  AN------NLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI- 139

Query: 236 QGEFPQEIFQLPNLQFLGLC 255
                  I  +    F+GL 
Sbjct: 140 ------NIHTIERNSFVGLS 153

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 27/150 (18%)

Query: 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILN--FSRLTHLNLSQSYFSGQIPAELLELSNLE 170
                +    L + DN  N   I              L L+++    +I       + L+
Sbjct: 123 HKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLD 180

Query: 171 VLDLSYSNF------DTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSS 224
            L+LS +N       D F+               +    LD+    I S   + L NL  
Sbjct: 181 ELNLSDNNNLEELPNDVFH-------------GASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 225 LRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
           LR  S     L+ + P  + +L  L    L
Sbjct: 228 LRARSTY--NLK-KLPT-LEKLVALMEASL 253

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 14/147 (9%)

Query: 121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLSYSNF 179
             L L +N F   E         +L  +N S +  +  I     E  S +  + L+  N 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS-N- 91

Query: 180 DTFYLKLQK-PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE 238
                +L+       + + L +LK L L +  I+     +   LSS+R  SL   ++   
Sbjct: 92  -----RLENVQ--HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-T 143

Query: 239 FPQEIFQ-LPNLQFLGLCGGPLSKKCN 264
                F  L +L  L L   P +  C 
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPFNCNCY 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 121 QRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLSYSN 178
             + L  N      IP      + +L  ++LS +  S ++  +  + L +L  L L  + 
Sbjct: 35  TEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 179 FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE 238
                     P   +L E L +L+ L L    I+        +L +L   SL   +LQ  
Sbjct: 92  ITEL------P--KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-T 142

Query: 239 FPQEIFQ-LPNLQFLGLCGGPLSKKCN 264
             +  F  L  +Q + L   P    C+
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFICDCH 169

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 27/162 (16%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            +  LD  +S    SI   + + +L  L +L    NN   + +   +   + LT+L    
Sbjct: 43  TLTSLDCHNS----SITDMTGIEKLTGLTKLICTSNNI--TTLD--LSQNTNLTYLACDS 94

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           +  +  +   +  L+ L  L+   +      +                L  L+     ++
Sbjct: 95  NKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVS-----------QNPLLTYLNCARNTLT 140

Query: 213 STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
                 +++ + L        +       ++     L  L  
Sbjct: 141 E---IDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDC 177

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 28/166 (16%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF 155
            L+  ++ L     +   + Q   L  L+   N    +EI   + + ++LT L+      
Sbjct: 110 YLNCDTNKL-----TKLDVSQNPLLTYLNCARNTL--TEID--VSHNTQLTELDCH--LN 158

Query: 156 SGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
                 ++   + L  LD S++      +                L  L+    +I+   
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITELDV-----------SQNKLLNRLNCDTNNITKL- 206

Query: 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261
              L     L F   S  +L  E    +  L  L +      PL++
Sbjct: 207 --DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTE 247

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 23/148 (15%)

Query: 107 SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLEL 166
               T S  QL  L  L   +++   +++   I   + LT L  + +  +     +L + 
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSI--TDMT-GIEKLTGLTKLICTSNNITTL---DLSQN 84

Query: 167 SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR 226
           +NL  L    +      +             LT L  L+     ++         L+ L 
Sbjct: 85  TNLTYLACDSNKLTNLDV-----------TPLTKLTYLNCDTNKLTKLDVSQNPLLTYL- 132

Query: 227 FSSLSGCRLQGEFPQEIFQLPNLQFLGL 254
             + +   L      ++     L  L  
Sbjct: 133 --NCARNTLT---EIDVSHNTQLTELDC 155

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 18/128 (14%)

Query: 102 SCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPA 161
            C      +   +     L  L    N    +E+   +     L  LN   +  + ++  
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKI--TELD--VSQNKLLNRLNCDTNNIT-KLD- 207

Query: 162 ELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLAN 221
            L +   L  LD S +      +             LT L   D     ++     TL+ 
Sbjct: 208 -LNQNIQLTFLDCSSNKLTEIDV-----------TPLTQLTYFDCSVNPLTELDVSTLSK 255

Query: 222 LSSLRFSS 229
           L++L    
Sbjct: 256 LTTLHCIQ 263

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 112 SSLFQLVHLQRLSLFDNNFNFSEIPSAI------LNFSRLTHLNLSQSYFSGQIPAELLE 165
           S L  L  L  L +   ++ F    +          F  L  L +  +     +    LE
Sbjct: 216 SDLPNLEKL-VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274

Query: 166 ---LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL---TNLKALDLINVHISSTVPHTL 219
              L  LE +D+S          L   G   L +++    +LK +++   ++S  +   L
Sbjct: 275 SDILPQLETMDISAGV-------LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

Query: 220 AN 221
             
Sbjct: 328 QK 329

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 118 VHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELL-ELSNLEVLDLS 175
              ++L L  N    S +PS A    ++L  L L+ +     +PA +  EL NLE L + 
Sbjct: 37  ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV- 92

Query: 176 YSNFDTFYLKLQK-PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234
             N      KLQ  P    + + L NL  L L    + S  P    +L+ L + SL    
Sbjct: 93  TDN------KLQALP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144

Query: 235 LQGEFPQEIF-QLPNLQFLGLCG 256
           LQ   P+ +F +L +L+ L L  
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYN 166

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 28/185 (15%)

Query: 104 LYGSINSTSSL----FQ-LVHLQRLSLFDNNFNFSEIPSAILN-FSRLTHLNLSQSYFSG 157
           L    N  SSL    F  L  L+ L L DN      +P+ I      L  L ++ +    
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--KLQTLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 158 QIPAELLE-LSNLEVLDLSYSNF-----DTF-------YLKLQKPGLANLAEN----LTN 200
            +P  + + L NL  L L  +         F       YL L    L +L +     LT+
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158

Query: 201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF-QLPNLQFLGLCGGPL 259
           LK L L N  +          L+ L+   L   +L+   P+  F  L  L+ L L   P 
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217

Query: 260 SKKCN 264
              CN
Sbjct: 218 DCTCN 222

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 14/153 (9%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
            +++L L        +  + I     L  L          +         L+ L +    
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA 353

Query: 179 FDTFYLKLQKP----GLANLAENLTNLKALDLINVHIS----STVPHTLANLSSLRFSSL 230
            +      +      GL  LA+    L+ + +    I+     ++   L NL   R   L
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413

Query: 231 SGCRLQGEFPQE------IFQLPNLQFLGLCGG 257
                  + P +      +     L+       
Sbjct: 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 98  DLASSCLYGSINSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFS 156
           +     L   I        LV  ++L     +    +E+P      +++  L+L  +   
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 157 GQIPAELLE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215
            +    L++   NLEVL+      D         GL  LA+    LK L +        +
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDR--------GLEVLAQYCKQLKRLRIERGADEQGM 358

Query: 216 PHTLANLSSLRFSSLS-GCR 234
                 +S     +L+ GC+
Sbjct: 359 EDEEGLVSQRGLIALAQGCQ 378

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 18/171 (10%)

Query: 99  LASSCLYGSINSTSSLFQLVH-----LQRLSLFDNNFNFSE--IPSAILNFSRLTHLNLS 151
           L S      I S   L +L       L+ L L D    F+   + S + +  ++  L + 
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKL-DKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 152 QSYFSGQIPAELLELS----NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLI 207
           +S FS +    L EL+    +LEVL+   + F     K+    L  +A N  +L ++ + 
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA----KISPKDLETIARNCRSLVSVKVG 228

Query: 208 NVHISS--TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256
           +  I          ANL      SL+      E    +     L  LGL  
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 24/154 (15%)

Query: 120 LQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLS 175
           +Q L +     + +     +    +   + L     +      I + L     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 176 YSNFDTFYLKLQKPGLANLAENL----TNLKALDLINVHISST----VPHTLANLSSLRF 227
            +        L   G+  + + L      ++ L L N  ++      +  TL  L +L+ 
Sbjct: 65  SNE-------LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 228 SSLSGCRLQGEFPQEIFQL-----PNLQFLGLCG 256
             LS   L     Q + +        L+ L L  
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 14/105 (13%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 131 NFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY-SNFDTFYLKLQKP 189
           +++ +P+  L+  ++  ++ + S         +  L  +E + L      +   L+    
Sbjct: 49  DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--- 105

Query: 190 GLANLAENLTNLKALDLIN-VHISSTVPHTLANLSSLRFSSLSGC 233
            L+ L     ++  +++I+  +++      L +  +L++  LS  
Sbjct: 106 -LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.66
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.88
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.1e-31  Score=245.61  Aligned_cols=209  Identities=31%  Similarity=0.477  Sum_probs=178.5

Q ss_pred             CCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcc--cceeEEcCCC--CcEEEEEeCCCCcee--ec
Q 019584           35 LCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCS--WDGVKCNEDT--GHVVELDLASSCLYG--SI  108 (338)
Q Consensus        35 ~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~l~~L~Ls~n~l~~--~~  108 (338)
                      .|.++|++||++||+++.++.          .+.+|.   .+.+||.  |.||.|+...  ++|+.|+|++|.+.+  .+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~----------~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~   68 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT----------TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG----------GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc----------cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence            599999999999999996432          568897   4568898  9999998654  799999999999998  78


Q ss_pred             CCCCccccCcCccEEEccC-CCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCccccccc
Q 019584          109 NSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ  187 (338)
Q Consensus       109 ~~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~  187 (338)
                      +.  .+.++++|++|++++ |.+.+. +|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.++       
T Consensus        69 ~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-------  138 (313)
T 1ogq_A           69 PS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-------  138 (313)
T ss_dssp             CG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-------
T ss_pred             Ch--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-------
Confidence            87  999999999999995 888876 8999999999999999999999999999999999999999999954       


Q ss_pred             CCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCC-CCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          188 KPGLANLAENLTNLKALDLINVHISSTVPHTLANLS-SLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       188 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                       +.+|..+..+++|++|++++|.+++.+|..++.++ +|++|++++|++++.+|..+..++ |++|++++|.+++..|..
T Consensus       139 -~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~  216 (313)
T 1ogq_A          139 -GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL  216 (313)
T ss_dssp             -SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred             -CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence             56788888889999999999998888888888887 888888888888877777777765 777777777777666554


Q ss_pred             CC
Q 019584          267 EA  268 (338)
Q Consensus       267 ~~  268 (338)
                      +.
T Consensus       217 ~~  218 (313)
T 1ogq_A          217 FG  218 (313)
T ss_dssp             CC
T ss_pred             Hh
Confidence            43

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=2.4e-28  Score=243.93  Aligned_cols=211  Identities=19%  Similarity=0.244  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCccc---ceeEEcCCCCcEEEEEeCCCCceeecCCCCcc
Q 019584           38 DRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSW---DGVKCNEDTGHVVELDLASSCLYGSINSTSSL  114 (338)
Q Consensus        38 ~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w---~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l  114 (338)
                      .+|+.||.+++++++++.|.. ....++...+|+   .+.++|.|   .||.|+.. ++|+.|+|+++++.|.+|+  .+
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~-~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l  101 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQ-QGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AI  101 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCC-CC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GG
T ss_pred             HHHHHHHHHHHHHcCCCCccc-CCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HH
Confidence            469999999999999887642 223455667898   56889999   99999765 7999999999999999998  99


Q ss_pred             ccCcCccEEEccCCCC------CC--------------------------------------------------------
Q 019584          115 FQLVHLQRLSLFDNNF------NF--------------------------------------------------------  132 (338)
Q Consensus       115 ~~l~~L~~L~L~~n~l------~~--------------------------------------------------------  132 (338)
                      +++++|++|+|++|.+      .+                                                        
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  181 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI  181 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence            9999999999999954      00                                                        


Q ss_pred             --------------CCCchhhhcCCCCcEEEcccccCccc-----------------cchhhc--CCCCCCEEEccCCCC
Q 019584          133 --------------SEIPSAILNFSRLTHLNLSQSYFSGQ-----------------IPAELL--ELSNLEVLDLSYSNF  179 (338)
Q Consensus       133 --------------~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l  179 (338)
                                    ..+|..++++++|++|+|++|.+++.                 +|..++  ++++|++|++++|++
T Consensus       182 ~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l  261 (636)
T 4eco_A          182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN  261 (636)
T ss_dssp             CCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred             chhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence                          01678899999999999999999985                 999998  999999999999996


Q ss_pred             CcccccccCCCcchhhcCCCCCCEEEccCCC-CCC-CCchhcccC------CCCCeeecccccCcccCch--hccCCCCC
Q 019584          180 DTFYLKLQKPGLANLAENLTNLKALDLINVH-ISS-TVPHTLANL------SSLRFSSLSGCRLQGEFPQ--EIFQLPNL  249 (338)
Q Consensus       180 ~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L  249 (338)
                      .        +.+|..+.++++|++|++++|+ +++ .+|..++.+      ++|++|++++|+++ .+|.  .+..+++|
T Consensus       262 ~--------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L  332 (636)
T 4eco_A          262 L--------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL  332 (636)
T ss_dssp             C--------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred             C--------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence            5        6788899999999999999998 888 788888876      89999999999999 8888  88999999


Q ss_pred             CeeeccCCCCCCcCC
Q 019584          250 QFLGLCGGPLSKKCN  264 (338)
Q Consensus       250 ~~L~l~~N~l~~~~p  264 (338)
                      ++|++++|.++|.+|
T Consensus       333 ~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          333 GMLECLYNQLEGKLP  347 (636)
T ss_dssp             CEEECCSCCCEEECC
T ss_pred             CEEeCcCCcCccchh
Confidence            999999999998888

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=3.8e-27  Score=240.12  Aligned_cols=213  Identities=26%  Similarity=0.380  Sum_probs=159.4

Q ss_pred             CCCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEcCCCCcEEEEEeCCCCceee---cCC
Q 019584           34 PLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGS---INS  110 (338)
Q Consensus        34 ~~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~---~~~  110 (338)
                      ....++|++||++||+++.++.          .+.+|.   .+.+||.|.||.|+  .++|+.|||+++.+.|.   +++
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~----------~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~   71 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN----------LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS   71 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT----------SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc----------cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh
Confidence            3346789999999999987432          578997   56789999999998  47999999999998886   321


Q ss_pred             ---------------------CCccccCcCccEEEccCCCCCCCCCch--hhhcCCCCcEEEcccccCccccchhh-cCC
Q 019584          111 ---------------------TSSLFQLVHLQRLSLFDNNFNFSEIPS--AILNFSRLTHLNLSQSYFSGQIPAEL-LEL  166 (338)
Q Consensus       111 ---------------------~~~l~~l~~L~~L~L~~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l  166 (338)
                                           +..+..+++|++|+|++|.+++. +|.  .+.++++|++|++++|.+.+.+|..+ ..+
T Consensus        72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  150 (768)
T 3rgz_A           72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL  150 (768)
T ss_dssp             HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred             hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence                                 12677889999999999998765 777  88899999999999999888777765 678


Q ss_pred             CCCCEEEccCCCCCccccc---------------ccC----CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584          167 SNLEVLDLSYSNFDTFYLK---------------LQK----PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF  227 (338)
Q Consensus       167 ~~L~~L~Ls~N~l~~~~l~---------------~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  227 (338)
                      ++|++|++++|++++....               +..    +..  .+..+++|++|++++|.+++.+|. ++++++|++
T Consensus       151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~  227 (768)
T 3rgz_A          151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH  227 (768)
T ss_dssp             TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred             CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC--CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence            8888888888876532100               000    011  124567777777777777776665 777778888


Q ss_pred             eecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584          228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       228 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      |++++|.+++.+|..+..+++|++|++++|.+++.+|.
T Consensus       228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  265 (768)
T 3rgz_A          228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP  265 (768)
T ss_dssp             EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred             EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc
Confidence            88888887777777777777777777777777766654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=5.9e-27  Score=215.59  Aligned_cols=208  Identities=21%  Similarity=0.302  Sum_probs=138.8

Q ss_pred             CCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCC-CCCCCCcccceeEEc--------CCCCcEEEEEeCCCCce
Q 019584           35 LCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPD-EKNKDCCSWDGVKCN--------EDTGHVVELDLASSCLY  105 (338)
Q Consensus        35 ~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~c~w~gv~c~--------~~~~~l~~L~Ls~n~l~  105 (338)
                      .+..+|+.||++||+.+..+...        ....|..+ ....++|.|.|+.|.        ....+++.|+|++|.++
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~--------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~   94 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNR--------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP   94 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTT--------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred             ccCchHHHHHHHHHHhccCCchh--------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence            35568999999999988543321        45678311 146788999999994        23468999999999988


Q ss_pred             eecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCccccc
Q 019584          106 GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLK  185 (338)
Q Consensus       106 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~  185 (338)
                       .+|.  .+.++++|++|++++|.++ . +|..+.++++|++|+|++|.++ .+|..+..+++|++|++++|++.     
T Consensus        95 -~lp~--~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~-----  163 (328)
T 4fcg_A           95 -QFPD--QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL-----  163 (328)
T ss_dssp             -SCCS--CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-----
T ss_pred             -hcCh--hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-----
Confidence             6666  7888999999999999987 3 8888888999999999999888 78888888888999999887643     


Q ss_pred             ccCCCcchhhc---------CCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccC
Q 019584          186 LQKPGLANLAE---------NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG  256 (338)
Q Consensus       186 ~~~~~~~~~~~---------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  256 (338)
                         +.+|..+.         .+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus       164 ---~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          164 ---TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             ---CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred             ---cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcC
Confidence               22333222         2445555555555544 34444444445555555555444 2333444444444444444


Q ss_pred             CCCCCcCCCC
Q 019584          257 GPLSKKCNNS  266 (338)
Q Consensus       257 N~l~~~~p~~  266 (338)
                      |.+.+.+|..
T Consensus       239 n~~~~~~p~~  248 (328)
T 4fcg_A          239 CTALRNYPPI  248 (328)
T ss_dssp             CTTCCBCCCC
T ss_pred             CcchhhhHHH
Confidence            4444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=3.2e-26  Score=234.38  Aligned_cols=204  Identities=21%  Similarity=0.271  Sum_probs=161.6

Q ss_pred             CCCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCC----CCCCCccc------------ceeEEcCCCCcEEEE
Q 019584           34 PLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDE----KNKDCCSW------------DGVKCNEDTGHVVEL   97 (338)
Q Consensus        34 ~~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----~~~~~c~w------------~gv~c~~~~~~l~~L   97 (338)
                      +.+..+|+.||++||+++.++              +|+.+.    ..+++|.|            .||.|+. .++|+.|
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L  328 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGL  328 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEE
T ss_pred             cccchHHHHHHHHHHHHcCCC--------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEE
Confidence            345568999999999999754              444221    12234999            9999986 4799999


Q ss_pred             EeCCCCceeecCCCCccccCcCccEEEc-cCCCCCCC-------------------------------------------
Q 019584           98 DLASSCLYGSINSTSSLFQLVHLQRLSL-FDNNFNFS-------------------------------------------  133 (338)
Q Consensus        98 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L-~~n~l~~~-------------------------------------------  133 (338)
                      +|+++++.|.+|+  .++++++|+.|+| ++|.+++.                                           
T Consensus       329 ~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~  406 (876)
T 4ecn_A          329 SLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD  406 (876)
T ss_dssp             ECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             ECccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence            9999999999998  9999999999999 77743221                                           


Q ss_pred             --------------------------------CCchhhhcCCCCcEEEcccccCcc-----------------ccchhhc
Q 019584          134 --------------------------------EIPSAILNFSRLTHLNLSQSYFSG-----------------QIPAELL  164 (338)
Q Consensus       134 --------------------------------~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~  164 (338)
                                                      .+|..+.++++|++|+|++|.+++                 .+|..++
T Consensus       407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence                                            067889999999999999999997                 3899887


Q ss_pred             --CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCC-CCC-CCchhcccCC-------CCCeeecccc
Q 019584          165 --ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH-ISS-TVPHTLANLS-------SLRFSSLSGC  233 (338)
Q Consensus       165 --~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l~-------~L~~L~Ls~N  233 (338)
                        .+++|++|+|++|++.        +.+|..+.++++|++|++++|+ +++ .+|..++.++       +|++|+|++|
T Consensus       487 f~~L~~L~~L~Ls~N~l~--------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNM--------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             GGGCTTCCEEEEESCTTC--------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             hccCCCCCEEECcCCCCC--------ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence              9999999999999854        5777888888888888888887 776 6776665554       7777777777


Q ss_pred             cCcccCch--hccCCCCCCeeeccCCCCCCcCC
Q 019584          234 RLQGEFPQ--EIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       234 ~l~~~~p~--~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      +++ .+|.  .+..+++|+.|++++|.++ .+|
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            777 6776  7777777777777777777 566

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.4e-23  Score=185.48  Aligned_cols=161  Identities=22%  Similarity=0.210  Sum_probs=136.2

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|+|++|.+.+..+.  .+.++++|++|++++|.++.. .+..+.++++|++|+|++|.+++..+..+..+++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEccCCCcCccCHh--HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence            4688899999999887766  788899999999999999865 6677888999999999999999666667788999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|+++        ...+..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.
T Consensus       112 L~L~~N~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          112 LYLGGNQLK--------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT  183 (251)
T ss_dssp             EECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             EEcCCCcCC--------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            999999865        334455788899999999999998776667888999999999999999776678888999999


Q ss_pred             eeccCCCCCCcC
Q 019584          252 LGLCGGPLSKKC  263 (338)
Q Consensus       252 L~l~~N~l~~~~  263 (338)
                      |++++|++.|.+
T Consensus       184 L~l~~N~~~c~~  195 (251)
T 3m19_A          184 ITLFGNQFDCSR  195 (251)
T ss_dssp             EECCSCCBCTTS
T ss_pred             EEeeCCceeCCc
Confidence            999999999873

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.7e-22  Score=179.23  Aligned_cols=166  Identities=20%  Similarity=0.170  Sum_probs=131.9

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+++..+.  .+.++++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTT--SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred             CCCCEEECcCCCCCeeCHH--HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence            3578888888888866655  788899999999999988743 4445678899999999999998655566788899999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|+++        ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++
T Consensus       114 L~l~~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          114 LRLDRNQLK--------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             EECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             EECCCCccC--------eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence            999999865        344556788899999999999988766666888899999999999998666666888889999


Q ss_pred             eeccCCCCCCcCCCCCC
Q 019584          252 LGLCGGPLSKKCNNSEA  268 (338)
Q Consensus       252 L~l~~N~l~~~~p~~~~  268 (338)
                      |++++|.+++..+..+.
T Consensus       186 L~L~~N~l~~~~~~~~~  202 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFD  202 (270)
T ss_dssp             EECCSSCCSCCCTTTTT
T ss_pred             EECCCCcCCcCCHHHhc
Confidence            99999988865444343

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=3.1e-23  Score=211.23  Aligned_cols=168  Identities=30%  Similarity=0.351  Sum_probs=116.5

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      ++++.|++++|.+.+.+|.  .+.++++|++|++++|++++. +|..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus       466 ~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  542 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW  542 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred             CCceEEEecCCcccCcCCH--HHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence            5678888888888877777  777888888888888888765 7777888888888888888888778877777777888


Q ss_pred             EEccCCCCCcc-c-------------------------------------------------------------------
Q 019584          172 LDLSYSNFDTF-Y-------------------------------------------------------------------  183 (338)
Q Consensus       172 L~Ls~N~l~~~-~-------------------------------------------------------------------  183 (338)
                      |++++|++++. +                                                                   
T Consensus       543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            77777765410 0                                                                   


Q ss_pred             ---------------------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh
Q 019584          184 ---------------------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE  242 (338)
Q Consensus       184 ---------------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  242 (338)
                                           ++   +.+|..++++++|++|++++|+++|.+|..++++++|++|||++|+++|.+|..
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~---g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLS---GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCB---SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             cCchhhhccccccEEECcCCccc---ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence                                 01   345555566666666666666666666666666666666666666666666666


Q ss_pred             ccCCCCCCeeeccCCCCCCcCCC
Q 019584          243 IFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       243 l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      +..+++|++|++++|+++|.+|.
T Consensus       700 l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          700 MSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GGGCCCCSEEECCSSEEEEECCS
T ss_pred             HhCCCCCCEEECcCCcccccCCC
Confidence            66666666666666666666664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.4e-22  Score=172.38  Aligned_cols=178  Identities=23%  Similarity=0.251  Sum_probs=145.7

Q ss_pred             CCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584           77 KDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH  147 (338)
Q Consensus        77 ~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~  147 (338)
                      ...|.|.++.|...         ..++++|++++|.+++..+.  .+..+++|++|++++|.++.. .+..+..+++|++
T Consensus         4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~   80 (208)
T 2o6s_A            4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTY   80 (208)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh--hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCE
Confidence            34589999999642         34689999999999866555  678899999999999999853 4556788999999


Q ss_pred             EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584          148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF  227 (338)
Q Consensus       148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  227 (338)
                      |++++|.+++..+..+..+++|++|++++|+++        ...+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ--------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCc--------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence            999999999655556789999999999999865        334456788999999999999999766667888999999


Q ss_pred             eecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCCCCC
Q 019584          228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPE  272 (338)
Q Consensus       228 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~  272 (338)
                      |++++|.+.+       .+++|+.|+++.|.++|.+|++.+..+.
T Consensus       153 L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          153 IWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             EECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             EEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            9999998774       3457899999999999999988776544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=1.5e-21  Score=170.31  Aligned_cols=163  Identities=21%  Similarity=0.271  Sum_probs=133.7

Q ss_pred             CCCCCcccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccccc
Q 019584           75 KNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY  154 (338)
Q Consensus        75 ~~~~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~  154 (338)
                      .+.+.|+|.++.|...            +++ .+|.  .+  .++|++|+|++|.++.. .|..+.++++|++|+|++|.
T Consensus        14 ~~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             CTTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCC
Confidence            3567899999999642            232 2333  23  37899999999999875 67888999999999999999


Q ss_pred             CccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584          155 FSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR  234 (338)
Q Consensus       155 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  234 (338)
                      ++...+..+..+++|++|+|++|+++        ...+..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+
T Consensus        76 l~~i~~~~~~~l~~L~~L~Ls~N~l~--------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           76 LGALPVGVFDSLTQLTVLDLGTNQLT--------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred             CCCcChhhcccCCCcCEEECCCCcCC--------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence            98544456788999999999999965        334556788999999999999998 688889999999999999999


Q ss_pred             CcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          235 LQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       235 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      +++..+..+..+++|+.|++++|++.|.|+
T Consensus       147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          147 LKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            996666678889999999999999999886

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.4e-21  Score=174.72  Aligned_cols=162  Identities=23%  Similarity=0.230  Sum_probs=141.7

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .+++++|++++|.+.+.  +  .+..+++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|+
T Consensus        62 l~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDI--S--ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             CTTCCEEECTTSCCCCC--G--GGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEECCCCCCCCc--h--hhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            46899999999998863  3  688999999999999999864 566689999999999999999976666789999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|+++        ...+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+
T Consensus       137 ~L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          137 YLNLAHNQLQ--------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             EEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EEECCCCccC--------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            9999999965        34455678999999999999999987777789999999999999999987777788999999


Q ss_pred             eeeccCCCCCCcCCC
Q 019584          251 FLGLCGGPLSKKCNN  265 (338)
Q Consensus       251 ~L~l~~N~l~~~~p~  265 (338)
                      .|++++|++.|.||.
T Consensus       209 ~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          209 YIWLHDNPWDCTCPG  223 (272)
T ss_dssp             EEECCSSCBCCCTTT
T ss_pred             EEEccCCCccccCcH
Confidence            999999999999883

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=3.3e-22  Score=183.81  Aligned_cols=159  Identities=23%  Similarity=0.334  Sum_probs=94.1

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcC------
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE------  165 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------  165 (338)
                      .++++|+|++|.++ .+|.  .+.++++|++|++++|.++ . +|..+.++++|++|++++|.+.+.+|..+..      
T Consensus       104 ~~L~~L~L~~n~l~-~lp~--~~~~l~~L~~L~Ls~n~l~-~-lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPD--TMQQFAGLETLTLARNPLR-A-LPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCS--CGGGGTTCSEEEEESCCCC-C-CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             CCCCEEECCCCCcc-chhH--HHhccCCCCEEECCCCccc-c-CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            46777777777777 5665  6777777777777777776 3 6777777777777777777666666665543      


Q ss_pred             ---CCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh
Q 019584          166 ---LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE  242 (338)
Q Consensus       166 ---l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  242 (338)
                         +++|++|++++|+++         .+|..+..+++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..
T Consensus       179 ~~~l~~L~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~  248 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR---------SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI  248 (328)
T ss_dssp             EEESTTCCEEEEEEECCC---------CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred             hccCCCCCEEECcCCCcC---------cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH
Confidence               666777777666653         233444444455555555544443 3334444444444444444444444444


Q ss_pred             ccCCCCCCeeeccCCCCCCcCCC
Q 019584          243 IFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       243 l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      +..+++|++|++++|.+.+.+|.
T Consensus       249 ~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          249 FGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             TTCCCCCCEEECTTCTTCCBCCT
T ss_pred             hcCCCCCCEEECCCCCchhhcch
Confidence            44444444444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=1.5e-22  Score=184.89  Aligned_cols=172  Identities=19%  Similarity=0.215  Sum_probs=133.4

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCC-CC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS-NL  169 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L  169 (338)
                      ..++++|++++|.+++.+|.  .+.++++|++|++++|.+++. +|..+..+++|++|++++|.+++.+|..+..++ +|
T Consensus       100 l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A          100 LTQLHYLYITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             CTTCSEEEEEEECCEEECCG--GGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             CCCCCEEECcCCeeCCcCCH--HHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            46789999999999988888  899999999999999999865 888999999999999999999989999998887 89


Q ss_pred             CEEEccCCCCCccc-----------cccc----CCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584          170 EVLDLSYSNFDTFY-----------LKLQ----KPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR  234 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~-----------l~~~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  234 (338)
                      ++|++++|++++..           +.+.    .+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|+
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred             cEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence            99999999865210           0000    023455566677777777777777654444 6667777777777777


Q ss_pred             CcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          235 LQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       235 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                      +++.+|..+..+++|++|++++|+++|.+|..
T Consensus       256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            77777777777777777777777777777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=4.4e-21  Score=171.27  Aligned_cols=163  Identities=21%  Similarity=0.242  Sum_probs=143.0

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..++++|++++|.++...+.  .+..+++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|+
T Consensus        60 l~~L~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  136 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAG--IFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT  136 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTT--TTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCccCeeChh--hhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence            46899999999999865544  678899999999999999864 556778999999999999999977777789999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|.++        ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus       137 ~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          137 YLSLGYNELQ--------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             EEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EEECCCCcCC--------ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence            9999999975        23345578999999999999999987777799999999999999999966666788899999


Q ss_pred             eeeccCCCCCCcCC
Q 019584          251 FLGLCGGPLSKKCN  264 (338)
Q Consensus       251 ~L~l~~N~l~~~~p  264 (338)
                      .|++++|++.|.|+
T Consensus       209 ~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          209 MLQLQENPWDCTCN  222 (270)
T ss_dssp             EEECCSSCBCCSSS
T ss_pred             EEEecCCCeeCCCc
Confidence            99999999999886

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=7.1e-21  Score=171.11  Aligned_cols=167  Identities=19%  Similarity=0.142  Sum_probs=111.5

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccccc-CccccchhhcCCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY-FSGQIPAELLELSNLE  170 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~  170 (338)
                      .+++.|++++|.+++..+.  .+..+++|++|++++|.++.. .|..+.++++|++|++++|. ++...|..+..+++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCceEEEeeCCcCCccCHH--HcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            4677777777777766555  667777777777777777643 46667777777777777776 6644466677777777


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|.++        ...+..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|+
T Consensus       109 ~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          109 TLHLDRCGLQ--------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             EEECTTSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             EEECCCCcCC--------EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            7777777754        23345566667777777777777665555566667777777777776644444566666777


Q ss_pred             eeeccCCCCCCcCCCCCCC
Q 019584          251 FLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       251 ~L~l~~N~l~~~~p~~~~~  269 (338)
                      +|++++|.+++..|..+..
T Consensus       181 ~L~l~~n~l~~~~~~~~~~  199 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFRD  199 (285)
T ss_dssp             EEECCSSCCCEECTTTTTT
T ss_pred             EEECCCCcccccCHhHccC
Confidence            7777777666665554443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=2.6e-21  Score=173.92  Aligned_cols=164  Identities=24%  Similarity=0.196  Sum_probs=135.2

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC-CCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN-FNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      ..+++.|++++|.+++..+.  .+..+++|++|++++|. ++.. .|..+..+++|++|++++|.+++..|..+..+++|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccceeCHh--hcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            46899999999999887777  88889999999999997 6543 57788889999999999999997777788889999


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL  249 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  249 (338)
                      ++|++++|+++        ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|
T Consensus       132 ~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          132 QYLYLQDNALQ--------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             CEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CEEECCCCccc--------ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence            99999999865        2334557788888888888888886555668888888888888888887778888888888


Q ss_pred             CeeeccCCCCCCcCCC
Q 019584          250 QFLGLCGGPLSKKCNN  265 (338)
Q Consensus       250 ~~L~l~~N~l~~~~p~  265 (338)
                      +.|++++|.+++..|.
T Consensus       204 ~~L~l~~n~l~~~~~~  219 (285)
T 1ozn_A          204 MTLYLFANNLSALPTE  219 (285)
T ss_dssp             CEEECCSSCCSCCCHH
T ss_pred             cEeeCCCCcCCcCCHH
Confidence            8888888888875443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=4.7e-21  Score=166.14  Aligned_cols=156  Identities=21%  Similarity=0.251  Sum_probs=134.7

Q ss_pred             EEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEcc
Q 019584           96 ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS  175 (338)
Q Consensus        96 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  175 (338)
                      .+++++|.++. +|.  .+  ...++.|++++|.++....+..+..+++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus        15 ~l~~s~n~l~~-iP~--~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           15 TVDCSNQKLNK-IPE--HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             EEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EeEeCCCCccc-Ccc--CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            67777888764 444  33  34578999999999864223458899999999999999997777789999999999999


Q ss_pred             CCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeecc
Q 019584          176 YSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLC  255 (338)
Q Consensus       176 ~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  255 (338)
                      +|+++        ...+..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|..+..+++|+.|+++
T Consensus        90 ~N~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           90 SNRLE--------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             SSCCC--------CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCccC--------ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            99975        4556678999999999999999999889999999999999999999998889999999999999999


Q ss_pred             CCCCCCcCC
Q 019584          256 GGPLSKKCN  264 (338)
Q Consensus       256 ~N~l~~~~p  264 (338)
                      +|++.|.|+
T Consensus       162 ~N~l~c~c~  170 (220)
T 2v70_A          162 ANPFNCNCY  170 (220)
T ss_dssp             SCCEECSGG
T ss_pred             CcCCcCCCc
Confidence            999999887

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=6.4e-21  Score=165.27  Aligned_cols=154  Identities=23%  Similarity=0.254  Sum_probs=129.4

Q ss_pred             EEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccC
Q 019584           97 LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY  176 (338)
Q Consensus        97 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  176 (338)
                      +++++++++. +|.  .+.  ++|+.|++++|.++.. .+..+..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus        16 v~c~~~~l~~-iP~--~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           16 VDCRGKGLTE-IPT--NLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EECTTSCCSS-CCS--SCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             EEcCCCCcCc-CCC--ccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            4445555553 333  332  6899999999999854 555789999999999999999977788999999999999999


Q ss_pred             CCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccC
Q 019584          177 SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG  256 (338)
Q Consensus       177 N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  256 (338)
                      |+++        ...+..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++
T Consensus        90 N~l~--------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           90 NKIT--------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             SCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CcCC--------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence            9975        23345578899999999999999998889999999999999999999977777788999999999999


Q ss_pred             CCCCCcCC
Q 019584          257 GPLSKKCN  264 (338)
Q Consensus       257 N~l~~~~p  264 (338)
                      |++.|.|+
T Consensus       162 N~~~c~c~  169 (220)
T 2v9t_B          162 NPFICDCH  169 (220)
T ss_dssp             SCEECSGG
T ss_pred             CCcCCCCc
Confidence            99999775

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=5.5e-21  Score=173.52  Aligned_cols=183  Identities=23%  Similarity=0.349  Sum_probs=117.0

Q ss_pred             CCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCC-CCchhhhcCCCCcE
Q 019584           78 DCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFS-EIPSAILNFSRLTH  147 (338)
Q Consensus        78 ~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~  147 (338)
                      ..|.|.++.|...         ..++++|++++|.++...+.  .+.++++|++|++++|.++.. ..+..+..+++|++
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh--HhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            4489999999642         35799999999999854444  578999999999999998632 12567777888888


Q ss_pred             EEcccccCccccchhhcCCCCCCEEEccCCCCCcccc-c------------ccC----CCcchhhcCCCCCCEEEccCCC
Q 019584          148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYL-K------------LQK----PGLANLAENLTNLKALDLINVH  210 (338)
Q Consensus       148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l-~------------~~~----~~~~~~~~~l~~L~~L~Ls~N~  210 (338)
                      |++++|.++ .+|..+..+++|++|++++|++++... .            +..    ...+..+..+++|++|++++|.
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            888888887 566667778888888888877543110 0            000    1122334444555555555555


Q ss_pred             CCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcC
Q 019584          211 ISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKC  263 (338)
Q Consensus       211 l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  263 (338)
                      +++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence            543 34445555555555555555555444555555555666666665555533

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=4.2e-21  Score=183.51  Aligned_cols=159  Identities=23%  Similarity=0.268  Sum_probs=133.9

Q ss_pred             CCcccce--eEEcCC--------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584           78 DCCSWDG--VKCNED--------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH  147 (338)
Q Consensus        78 ~~c~w~g--v~c~~~--------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~  147 (338)
                      ..|.|.+  +.|...        +.++++|+|++|.+++..+.  .+.++++|++|++++|.+.+...+..+.++++|++
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~   83 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII   83 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccCCE
Confidence            4455544  778643        25799999999999988777  89999999999999999875424677999999999


Q ss_pred             EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchh--hcCCCCCCEEEccCCCCCCCCchh-cccCCC
Q 019584          148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL--AENLTNLKALDLINVHISSTVPHT-LANLSS  224 (338)
Q Consensus       148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~  224 (338)
                      |+|++|.+++..|..+..+++|++|++++|+++        +..+..  +..+++|++|++++|.+++..|.. +..+++
T Consensus        84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD--------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             EECTTCTTCEECTTTTTTCTTCCEEECTTSCCB--------THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             EeCCCCccCccChhhccCcccCCEEeCCCCCCC--------ccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            999999999888999999999999999999965        333443  889999999999999999887776 889999


Q ss_pred             CCeeecccccCcccCchhccCC
Q 019584          225 LRFSSLSGCRLQGEFPQEIFQL  246 (338)
Q Consensus       225 L~~L~Ls~N~l~~~~p~~l~~l  246 (338)
                      |++|++++|.+++..|..+..+
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l  177 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNF  177 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGG
T ss_pred             ccEEeCCCCcccccChhhhhcc
Confidence            9999999999998777666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=7.2e-21  Score=172.72  Aligned_cols=171  Identities=23%  Similarity=0.233  Sum_probs=148.0

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..++++|++++|.+.. ++.  .+..+++|++|++++|.++.......+..+++|++|++++|.+++..+..+..+++|+
T Consensus        77 ~~~L~~L~Ls~n~i~~-l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  153 (306)
T 2z66_A           77 TTSLKYLDLSFNGVIT-MSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  153 (306)
T ss_dssp             CSCCCEEECCSCSEEE-EEE--EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred             ccccCEEECCCCcccc-Chh--hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence            4689999999999984 455  6888999999999999997542225788999999999999999988888899999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|.+++       ..+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+
T Consensus       154 ~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  226 (306)
T 2z66_A          154 VLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  226 (306)
T ss_dssp             EEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred             EEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence            99999998642       14677889999999999999999987788999999999999999999977777888999999


Q ss_pred             eeeccCCCCCCcCCCCCCCCC
Q 019584          251 FLGLCGGPLSKKCNNSEASPP  271 (338)
Q Consensus       251 ~L~l~~N~l~~~~p~~~~~~~  271 (338)
                      +|++++|.+++..|......+
T Consensus       227 ~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             EEECTTSCCCBCSSSSCCCCC
T ss_pred             EeECCCCCCcccCHHHHHhhh
Confidence            999999999998887766543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=5.6e-21  Score=177.84  Aligned_cols=176  Identities=24%  Similarity=0.242  Sum_probs=147.1

Q ss_pred             CCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccc-cCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584           78 DCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLF-QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH  147 (338)
Q Consensus        78 ~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~  147 (338)
                      ..|.+..+.|...         ...++.|+|++|.+++..+.  .+. ++++|++|+|++|.++.. .+..+.++++|++
T Consensus        16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~--~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~   92 (361)
T 2xot_A           16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRY   92 (361)
T ss_dssp             CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred             CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh--hhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCE
Confidence            3478888888532         34588999999999987766  676 899999999999999864 5677999999999


Q ss_pred             EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhc---ccCCC
Q 019584          148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL---ANLSS  224 (338)
Q Consensus       148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~  224 (338)
                      |+|++|++++..+..|..+++|++|+|++|+++        ...+..+..+++|++|+|++|.+++..+..+   ..+++
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~--------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV--------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK  164 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCccc--------EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence            999999999666667899999999999999975        3346788999999999999999997544444   57899


Q ss_pred             CCeeecccccCcccCchhccCCCC--CCeeeccCCCCCCcCC
Q 019584          225 LRFSSLSGCRLQGEFPQEIFQLPN--LQFLGLCGGPLSKKCN  264 (338)
Q Consensus       225 L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~l~~N~l~~~~p  264 (338)
                      |+.|+|++|++++..+..+..++.  ++.|++++|++.|.|.
T Consensus       165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            999999999999655567777776  4889999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=3.6e-20  Score=177.36  Aligned_cols=171  Identities=22%  Similarity=0.185  Sum_probs=115.7

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|+|++|++++..+.  .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.+++..+..+..+++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            4788899999998887777  788888888888888888754 5677888888888888888888555556778888888


Q ss_pred             EEccCCCCCcccc------------ccc----CCCcc-hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584          172 LDLSYSNFDTFYL------------KLQ----KPGLA-NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR  234 (338)
Q Consensus       172 L~Ls~N~l~~~~l------------~~~----~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  234 (338)
                      |++++|+++....            .+.    ...++ ..+..+++|++|++++|++++ +| .+..+++|++|+|++|.
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCc
Confidence            8888888764211            000    01111 235566677777777766664 22 35556666666666666


Q ss_pred             CcccCchhccCCCCCCeeeccCCCCCCcCCCCC
Q 019584          235 LQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSE  267 (338)
Q Consensus       235 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~  267 (338)
                      +++..|..+..+++|+.|++++|.+++..|..+
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  262 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF  262 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             CcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence            665556666666666666666666665544433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=1.3e-20  Score=168.65  Aligned_cols=133  Identities=25%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      ++++|++++|.+++..+.  .+.++++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus        29 ~l~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEEECTTCCCCEECTT--TTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccEEECCCCcccccCHh--HhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            455555555555544443  455555555555555555432 33345555555555555555554444445555555555


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCc
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      ++++|+++.        ..+..+..+++|++|++++|.+++. +|..++.+++|++|++++|+++
T Consensus       106 ~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          106 VAVETNLAS--------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             ECTTSCCCC--------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCccc--------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            555555431        1111233444444444444444331 2344444444444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=7.9e-21  Score=181.62  Aligned_cols=139  Identities=22%  Similarity=0.225  Sum_probs=124.1

Q ss_pred             cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584          118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN  197 (338)
Q Consensus       118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~  197 (338)
                      ++|+.|++++|.++.. .|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++        ...+..+..
T Consensus       275 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~  345 (455)
T 3v47_A          275 SGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--------SIDSRMFEN  345 (455)
T ss_dssp             SCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECGGGGTT
T ss_pred             cCceEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC--------CcChhHhcC
Confidence            5799999999998865 7888999999999999999999877888999999999999999965        345678889


Q ss_pred             CCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584          198 LTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       198 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      +++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++|.||.
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99999999999999988889999999999999999999976666678899999999999999999984

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=5.6e-20  Score=166.04  Aligned_cols=155  Identities=23%  Similarity=0.210  Sum_probs=86.5

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+++..+.  .+..+++|++|++++|.++.  ++.. ..+++|++|++++|.++ .+|..+..+++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~  104 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLA--TLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV  104 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGG--GGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE
T ss_pred             CCCCEEEcCCCcCCccCHH--HhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCE
Confidence            3566666666666655554  56666666666666666543  2221 45556666666666665 45555555666666


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|+++        ...+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++
T Consensus       105 L~l~~N~l~--------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  176 (290)
T 1p9a_G          105 LDVSFNRLT--------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (290)
T ss_dssp             EECCSSCCC--------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             EECCCCcCc--------ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence            666666543        222344555555666666666555544444555555556666655555333333445555555


Q ss_pred             eeccCCCCC
Q 019584          252 LGLCGGPLS  260 (338)
Q Consensus       252 L~l~~N~l~  260 (338)
                      |++++|.++
T Consensus       177 L~L~~N~l~  185 (290)
T 1p9a_G          177 LLLQENSLY  185 (290)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCcCC
Confidence            555555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=6.5e-20  Score=165.63  Aligned_cols=160  Identities=23%  Similarity=0.202  Sum_probs=139.4

Q ss_pred             CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      ...+++.|++++|.+++.. .   ...+++|++|++++|.++.  +|..+..+++|++|++++|++++..+..|..+++|
T Consensus        53 ~l~~L~~L~L~~n~l~~~~-~---~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           53 PYTRLTQLNLDRAELTKLQ-V---DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (290)
T ss_dssp             TCTTCCEEECTTSCCCEEE-C---CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             cCCCCCEEECCCCccCccc-C---CCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence            3568999999999998653 2   3688999999999999973  78888999999999999999996666789999999


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL  249 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  249 (338)
                      ++|++++|+++        ...+..+..+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+...++|
T Consensus       127 ~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L  197 (290)
T 1p9a_G          127 QELYLKGNELK--------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (290)
T ss_dssp             CEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             CEEECCCCCCC--------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence            99999999975        344556788999999999999999766666788999999999999999 788888888999


Q ss_pred             CeeeccCCCCCCcCC
Q 019584          250 QFLGLCGGPLSKKCN  264 (338)
Q Consensus       250 ~~L~l~~N~l~~~~p  264 (338)
                      +.+++++|++.|.|.
T Consensus       198 ~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          198 PFAFLHGNPWLCNCE  212 (290)
T ss_dssp             SEEECCSCCBCCSGG
T ss_pred             CeEEeCCCCccCcCc
Confidence            999999999999884

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=1.9e-19  Score=160.86  Aligned_cols=165  Identities=21%  Similarity=0.157  Sum_probs=142.9

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+...  .  .+..+++|++|++++|.+++  + +.+..+++|++|++++|.+++..+..+..+++|++
T Consensus        41 ~~L~~L~l~~~~i~~~--~--~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV--Q--GIQYLPNVRYLALGGNKLHD--I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             TTCCEEECTTSCCCCC--T--TGGGCTTCCEEECTTSCCCC--C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cceeeeeeCCCCcccc--c--ccccCCCCcEEECCCCCCCC--c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            5799999999998742  2  68899999999999999974  4 47899999999999999999766667899999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|+++        +..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++
T Consensus       114 L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          114 LVLVENQLQ--------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             EECTTSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCcCC--------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence            999999965        345566889999999999999999877777899999999999999999777777889999999


Q ss_pred             eeccCCCCCCcCCCCCCCCC
Q 019584          252 LGLCGGPLSKKCNNSEASPP  271 (338)
Q Consensus       252 L~l~~N~l~~~~p~~~~~~~  271 (338)
                      |++++|.+++..|..+...+
T Consensus       186 L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          186 LRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             EECCSSCCSCCCTTTTTTCT
T ss_pred             EECCCCcCCccCHHHHhCCc
Confidence            99999999987765554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=174.50  Aligned_cols=171  Identities=27%  Similarity=0.333  Sum_probs=124.8

Q ss_pred             CCCCcccceeEEcCC-----------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCC
Q 019584           76 NKDCCSWDGVKCNED-----------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSR  144 (338)
Q Consensus        76 ~~~~c~w~gv~c~~~-----------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~  144 (338)
                      ....|.|.++ |+..           ..++++|++++|.+++..+.  .+.++++|++|++++|.++.. .+..+.++++
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  101 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLGS  101 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCCC
Confidence            4566888876 5421           24789999999999877665  788999999999999998764 5677889999


Q ss_pred             CcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCC-CCCCCchhccc
Q 019584          145 LTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVH-ISSTVPHTLAN  221 (338)
Q Consensus       145 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~  221 (338)
                      |++|++++|.+++..+..+..+++|++|++++|+++.         +|.  .+..+++|++|++++|. +.+..+..++.
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT---------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS---------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc---------cCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            9999999999985444448889999999999998753         332  56667777777777773 55444556667


Q ss_pred             CCCCCeeecccccCcccCchhccCCCCCCeeeccCCCC
Q 019584          222 LSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPL  259 (338)
Q Consensus       222 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  259 (338)
                      +++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            77777777777777766666666655555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=2.5e-19  Score=158.14  Aligned_cols=176  Identities=22%  Similarity=0.234  Sum_probs=149.5

Q ss_pred             CCcccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcc
Q 019584           78 DCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSG  157 (338)
Q Consensus        78 ~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~  157 (338)
                      .||.|.|..|..   ..++++++++.++. +|.  .+.  ++++.|++++|.++.. .+..+.++++|++|+|++|.+++
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~   73 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT   73 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence            477899999953   45689999999884 444  343  6899999999999875 67789999999999999999998


Q ss_pred             ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc
Q 019584          158 QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       158 ~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  237 (338)
                      ..+..+..+++|++|++++|+++        ...+..+..+++|++|++++|.+++..+..+..+++|++|+|++|++++
T Consensus        74 ~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           74 LSAGVFDDLTELGTLGLANNQLA--------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCHhHhccCCcCCEEECCCCccc--------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence            77778999999999999999975        3445678899999999999999998777778999999999999999997


Q ss_pred             cCchhccCCCCCCeeeccCCCCCCcCCCCCCCC
Q 019584          238 EFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASP  270 (338)
Q Consensus       238 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  270 (338)
                      ..+..+..+++|++|++++|.+++..|..+...
T Consensus       146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  178 (251)
T 3m19_A          146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL  178 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence            666689999999999999999997766555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=7e-20  Score=176.32  Aligned_cols=172  Identities=23%  Similarity=0.224  Sum_probs=122.3

Q ss_pred             cceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccc
Q 019584           82 WDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ  152 (338)
Q Consensus        82 w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~  152 (338)
                      |..+.|...         ..+++.|+|++|.+++..+.  .+.++++|++|+|++|.++.. .|..+.++++|++|+|++
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCC
Confidence            567777532         35788999999999887776  788899999999999988764 677888888999999999


Q ss_pred             ccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccc
Q 019584          153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG  232 (338)
Q Consensus       153 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  232 (338)
                      |.+++..+..+..+++|++|++++|+++.        ..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  161 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVI--------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK  161 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred             CcCCccCcccccCCCCCCEEECCCCcccc--------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence            88885444457888888888888888652        3345566666666666666666665555666666666666666


Q ss_pred             ccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          233 CRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       233 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      |.+++..+..+..+++|+.|++++|.+.+..+
T Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             CCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             CcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            66664444455566666666666666555433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=8.2e-20  Score=163.36  Aligned_cols=168  Identities=21%  Similarity=0.136  Sum_probs=142.1

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .+++++|++++|.+++..+.  .+..+++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             ccCCcEEECCCCcCCccCHH--HccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            46899999999999987766  789999999999999999864 667899999999999999999966666789999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCC----eeecccccCcccCchhccCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR----FSSLSGCRLQGEFPQEIFQL  246 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l  246 (338)
                      +|++++|.+++       ..+|..+..+++|++|++++|++++..+..+..+.+|+    .|++++|.+++. +......
T Consensus       128 ~L~l~~n~l~~-------~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~  199 (276)
T 2z62_A          128 ELNVAHNLIQS-------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKE  199 (276)
T ss_dssp             EEECCSSCCCC-------CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCS
T ss_pred             EEECcCCccce-------ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCC
Confidence            99999999753       24688899999999999999999987777777777777    899999999954 4444455


Q ss_pred             CCCCeeeccCCCCCCcCCCCCCC
Q 019584          247 PNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       247 ~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      .+|+.|++++|.+++..+..+..
T Consensus       200 ~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          200 IRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             CCEEEEECCSSCCSCCCTTTTTT
T ss_pred             CcccEEECCCCceeecCHhHhcc
Confidence            68999999999999755544333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=3.7e-19  Score=152.46  Aligned_cols=157  Identities=19%  Similarity=0.179  Sum_probs=132.8

Q ss_pred             EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584           95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL  174 (338)
Q Consensus        95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  174 (338)
                      +.++.++++++.. |.  .  ..++|++|++++|.++.. .+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        10 ~~v~c~~~~l~~~-p~--~--~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A           10 TTVECYSQGRTSV-PT--G--IPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TEEECCSSCCSSC-CS--C--CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEecCCCccCC-CC--C--CCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            4788888887643 32  2  246899999999999854 5566889999999999999999655556789999999999


Q ss_pred             cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeec
Q 019584          175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL  254 (338)
Q Consensus       175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  254 (338)
                      ++|+++        ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus        84 s~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           84 STNQLQ--------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             CSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcCC--------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence            999975        334456789999999999999999877777899999999999999999766666889999999999


Q ss_pred             cCCCCCCcCCC
Q 019584          255 CGGPLSKKCNN  265 (338)
Q Consensus       255 ~~N~l~~~~p~  265 (338)
                      ++|++.|.+|.
T Consensus       156 ~~N~~~~~~~~  166 (208)
T 2o6s_A          156 HDNPWDCTCPG  166 (208)
T ss_dssp             CSCCBCCCTTT
T ss_pred             cCCCeecCCCC
Confidence            99999999884

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=2e-19  Score=171.68  Aligned_cols=175  Identities=22%  Similarity=0.192  Sum_probs=128.9

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|+|++|.+.+..+.  .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|++++..+..+..+++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence            4677888888888776666  777888888888888887654 5567777888888888888887444446777788888


Q ss_pred             EEccCCCCCcccc------------cccC----CCcc-hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584          172 LDLSYSNFDTFYL------------KLQK----PGLA-NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR  234 (338)
Q Consensus       172 L~Ls~N~l~~~~l------------~~~~----~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  234 (338)
                      |++++|.++....            .+..    ..++ ..+.++++|++|++++|.++. +| .+..+++|++|+|++|+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCc
Confidence            8888877653210            0000    1122 356778888888888888874 44 47788899999999999


Q ss_pred             CcccCchhccCCCCCCeeeccCCCCCCcCCCCCCCCC
Q 019584          235 LQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPP  271 (338)
Q Consensus       235 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~  271 (338)
                      +++..|..+..+++|+.|++++|.+++..|..+...+
T Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             cCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence            9987788888999999999999999887776555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=9.1e-20  Score=180.50  Aligned_cols=164  Identities=20%  Similarity=0.148  Sum_probs=143.7

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..++++|++++|.+++..+.  .+.++++|++|++++|.++.. .|..+.++++|++|+|++|.+++..|..+..+++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  107 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE  107 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred             CCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence            46799999999999988877  899999999999999999864 677899999999999999999987799999999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL  249 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  249 (338)
                      +|++++|.++        ...+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|++++..|..+..+++|
T Consensus       108 ~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          108 NLVAVETKLA--------SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             EEECTTSCCC--------CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             EEEccCCccc--------cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            9999999975        3344668999999999999999986 679999999999999999999998777777766555


Q ss_pred             C----eeeccCCCCCCcCCC
Q 019584          250 Q----FLGLCGGPLSKKCNN  265 (338)
Q Consensus       250 ~----~L~l~~N~l~~~~p~  265 (338)
                      +    ++++++|.+++..+.
T Consensus       180 ~~~l~~L~l~~n~l~~~~~~  199 (606)
T 3vq2_A          180 PQVNLSLDMSLNPIDFIQDQ  199 (606)
T ss_dssp             TTCCCEEECTTCCCCEECTT
T ss_pred             ccccceeeccCCCcceeCcc
Confidence            4    799999999865544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=3.4e-20  Score=181.38  Aligned_cols=173  Identities=28%  Similarity=0.321  Sum_probs=139.5

Q ss_pred             CcccceeEEcCC-----------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584           79 CCSWDGVKCNED-----------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH  147 (338)
Q Consensus        79 ~c~w~gv~c~~~-----------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~  147 (338)
                      .|.|.++ |+..           ..++++|++++|.+++..+.  .+.++++|++|++++|.+++. .|..+.++++|++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~   78 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEH   78 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCE
Confidence            4788887 7532           24799999999999988777  899999999999999999864 6678999999999


Q ss_pred             EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCC
Q 019584          148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLR  226 (338)
Q Consensus       148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~  226 (338)
                      |++++|.+++..|..++.+++|++|++++|.+++       ...|..+.++++|++|++++|.+.+.+| ..+..+++|+
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  151 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-------LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN  151 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS-------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccc-------cchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence            9999999997777779999999999999999753       1345677888888888888888544454 5788888888


Q ss_pred             eeecccccCcccCchhccC------------------------CCCCCeeeccCCCCCCc
Q 019584          227 FSSLSGCRLQGEFPQEIFQ------------------------LPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       227 ~L~Ls~N~l~~~~p~~l~~------------------------l~~L~~L~l~~N~l~~~  262 (338)
                      +|++++|.+++.+|..+..                        +++|++|++++|.+++.
T Consensus       152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             eeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            8888888888777766544                        56677777777777763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=6.4e-20  Score=181.59  Aligned_cols=165  Identities=19%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCc-hhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIP-SAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ++++.|++++|.+.+ ++.  .+..+++|+.|++++|.+.+. .| ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus       376 ~~L~~L~L~~n~l~~-~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  451 (606)
T 3vq2_A          376 NSLRHLDLSFNGAII-MSA--NFMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN  451 (606)
T ss_dssp             SCCCEEECCSCSEEE-ECC--CCTTCTTCCEEECTTSEEEST-TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             CcccEeECCCCcccc-chh--hccCCCCCCeeECCCCccCCc-cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence            456667777766654 223  455555566666665555443 23 3455555555555555555544455555555555


Q ss_pred             EEEccCCCCCccc--------------------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeec
Q 019584          171 VLDLSYSNFDTFY--------------------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL  230 (338)
Q Consensus       171 ~L~Ls~N~l~~~~--------------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  230 (338)
                      +|++++|.+++..                    ++   +..|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus       452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE---QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC---ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            5555555432100                    11   223344555555555555555555555555555555555555


Q ss_pred             ccccCcccCchhccCCC-CCCeeeccCCCCCCcCC
Q 019584          231 SGCRLQGEFPQEIFQLP-NLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       231 s~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p  264 (338)
                      ++|+++ .+|..+..++ +|++|++++|++.|.|+
T Consensus       529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            555555 4444455554 35555666666555555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=1.7e-19  Score=178.76  Aligned_cols=164  Identities=23%  Similarity=0.192  Sum_probs=137.7

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      +.++++|||++|.|++..+.  .|.++++|++|+|++|.++.. .+..|.++++|++|+|++|++++..+..|.++++|+
T Consensus        51 p~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred             CcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence            35789999999999987777  899999999999999999864 566799999999999999999965556789999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL  249 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  249 (338)
                      +|++++|+++        ...+..+.++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..+.++
T Consensus       128 ~L~Ls~N~l~--------~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          128 KLVAVETNLA--------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             EEECTTSCCC--------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             EEECCCCcCC--------CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence            9999999975        3334568899999999999999976 467888999999999999999998777777654443


Q ss_pred             ----CeeeccCCCCCCcCCC
Q 019584          250 ----QFLGLCGGPLSKKCNN  265 (338)
Q Consensus       250 ----~~L~l~~N~l~~~~p~  265 (338)
                          ..++++.|.+....|.
T Consensus       200 ~~~~~~~~ls~n~l~~i~~~  219 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMNFIQPG  219 (635)
T ss_dssp             TTCCCEEECTTCCCCEECTT
T ss_pred             hhhhhhhhcccCcccccCcc
Confidence                4678888888765443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=176.87  Aligned_cols=159  Identities=21%  Similarity=0.255  Sum_probs=94.7

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCC-CCchhhhcCCCCcEEEcccccCccccchh-hcCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFS-EIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELSNL  169 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L  169 (338)
                      +++++|++++|.+++..+.  .+..+++|++|++++|.+++. .+|..+..+++|++|++++|.+++.+|.. +..+++|
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CcccEEEeECCccChhhhh--hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            4566666666666655555  566666666666666666531 13445666666666666666666545543 5556666


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh-ccCCCC
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE-IFQLPN  248 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~  248 (338)
                      ++|++++|+++        +..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++
T Consensus       402 ~~L~Ls~N~l~--------~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  469 (520)
T 2z7x_B          402 LSLNMSSNILT--------DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS  469 (520)
T ss_dssp             CEEECCSSCCC--------GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             CEEECcCCCCC--------cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence            66666666643        22232222  56666666666666 45665566666666666666666 44443 556666


Q ss_pred             CCeeeccCCCCCCcCC
Q 019584          249 LQFLGLCGGPLSKKCN  264 (338)
Q Consensus       249 L~~L~l~~N~l~~~~p  264 (338)
                      |++|++++|+++|.|+
T Consensus       470 L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          470 LQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             ccEEECcCCCCcccCC
Confidence            6666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=2e-19  Score=172.26  Aligned_cols=171  Identities=23%  Similarity=0.210  Sum_probs=103.0

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh--------
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE--------  162 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--------  162 (338)
                      ..+++.|+|++|.+.+..+.  .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.++...+..        
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  174 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVG--AFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM  174 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCccCCcChh--hccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence            45778888888888776666  777778888888888877643 4445677777777777777776333323        


Q ss_pred             -----------------hcCCCCCCEEEccCCCCCccc----------ccccC----CCcchhhcCCCCCCEEEccCCCC
Q 019584          163 -----------------LLELSNLEVLDLSYSNFDTFY----------LKLQK----PGLANLAENLTNLKALDLINVHI  211 (338)
Q Consensus       163 -----------------l~~l~~L~~L~Ls~N~l~~~~----------l~~~~----~~~~~~~~~l~~L~~L~Ls~N~l  211 (338)
                                       +..+++|++|++++|++++..          +.+..    +..|..+.++++|++|++++|.+
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence                             334455555555555543210          00000    11244455566666666666666


Q ss_pred             CCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          212 SSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       212 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      ++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.|+|.
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            65555556666666666666666664444455566666666666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=4.7e-19  Score=162.48  Aligned_cols=192  Identities=21%  Similarity=0.257  Sum_probs=134.6

Q ss_pred             CCCCCCCCCCCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchh
Q 019584           68 ATWKPDEKNKDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSA  138 (338)
Q Consensus        68 ~~w~~~~~~~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~  138 (338)
                      ..|....+....|.|+.+.|...         .++++.|++++|.+++..+.  .+.++++|++|++++|.++.. .|..
T Consensus        19 ~~~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~   95 (330)
T 1xku_A           19 EPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGA   95 (330)
T ss_dssp             ---CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTT
T ss_pred             ccccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHH
Confidence            34443323344578999999631         35789999999999987766  789999999999999999864 6888


Q ss_pred             hhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCccccc------------cc------CCCcchhhcCCCC
Q 019584          139 ILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLK------------LQ------KPGLANLAENLTN  200 (338)
Q Consensus       139 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~------------~~------~~~~~~~~~~l~~  200 (338)
                      +.++++|++|++++|.++ .+|..+.  ++|++|++++|.+++....            +.      .+..+..+..+++
T Consensus        96 ~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  172 (330)
T 1xku_A           96 FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  172 (330)
T ss_dssp             TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence            999999999999999887 5555443  4566666666654421000            00      0123445666677


Q ss_pred             CCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCC
Q 019584          201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEA  268 (338)
Q Consensus       201 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~  268 (338)
                      |++|++++|.++. +|..+.  ++|++|++++|++++..|..+..+++|++|++++|.+++..|..+.
T Consensus       173 L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          173 LSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             CCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            7777777777664 444433  6788888888888877778888889999999999998886664443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=3.3e-19  Score=176.45  Aligned_cols=167  Identities=16%  Similarity=0.067  Sum_probs=148.2

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      +.+++.|++++|.+++..+.  .+.++++|++|++++|.++.. .|..+.++++|++|++++|.+++..|..+..+++|+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK  108 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred             CCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence            45799999999999988777  899999999999999999865 788899999999999999999988899999999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|++++        ..+..+.++++|++|++++|.+++..++.+..+++|++|++++|.+++..|..+..+++|+
T Consensus       109 ~L~L~~n~i~~--------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          109 HLFFIQTGISS--------IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             EEECTTSCCSC--------GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             EeeccccCccc--------CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            99999999753        3356688999999999999999985444455599999999999999988888999999999


Q ss_pred             --eeeccCCCCCCcCCCCCC
Q 019584          251 --FLGLCGGPLSKKCNNSEA  268 (338)
Q Consensus       251 --~L~l~~N~l~~~~p~~~~  268 (338)
                        .|++++|.+++..|..+.
T Consensus       181 ~l~L~l~~n~l~~~~~~~~~  200 (606)
T 3t6q_A          181 NLSLNLNGNDIAGIEPGAFD  200 (606)
T ss_dssp             SEEEECTTCCCCEECTTTTT
T ss_pred             eeEEecCCCccCccChhHhh
Confidence              899999999998776544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=3.9e-19  Score=153.99  Aligned_cols=150  Identities=18%  Similarity=0.208  Sum_probs=131.0

Q ss_pred             CCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584           77 KDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH  147 (338)
Q Consensus        77 ~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~  147 (338)
                      ...|.|..+.|...         ..+++.|++++|.+++..+.  .+..+++|++|+|++|.++.. .|..+.++++|++
T Consensus         8 ~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~--~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~   84 (220)
T 2v9t_B            8 ACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG--AFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNS   84 (220)
T ss_dssp             TSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT--SSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCE
T ss_pred             CCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh--HhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCE
Confidence            34588999999642         34789999999999987776  889999999999999999865 6889999999999


Q ss_pred             EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584          148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF  227 (338)
Q Consensus       148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  227 (338)
                      |+|++|.++...+..+..+++|++|+|++|+++        ...+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKIN--------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             EECCCCcCCccCHhHccCCCCCCEEECCCCCCC--------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence            999999999544445789999999999999975        455778899999999999999999887888999999999


Q ss_pred             eecccccCcc
Q 019584          228 SSLSGCRLQG  237 (338)
Q Consensus       228 L~Ls~N~l~~  237 (338)
                      |+|++|.+..
T Consensus       157 L~L~~N~~~c  166 (220)
T 2v9t_B          157 MHLAQNPFIC  166 (220)
T ss_dssp             EECCSSCEEC
T ss_pred             EEeCCCCcCC
Confidence            9999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=3.6e-19  Score=151.41  Aligned_cols=151  Identities=17%  Similarity=0.215  Sum_probs=129.2

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+.. ++   .+..+++|++|++++|.++   .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        44 ~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           44 NSLTYITLANINVTD-LT---GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HTCCEEEEESSCCSC-CT---TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             CCccEEeccCCCccC-hH---HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            479999999999883 32   5888999999999999775   3457899999999999999999878889999999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCC-CCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH-ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      |++++|+++        ...+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|+
T Consensus       117 L~Ls~n~i~--------~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~  184 (197)
T 4ezg_A          117 LDISHSAHD--------DSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLN  184 (197)
T ss_dssp             EECCSSBCB--------GGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCC
T ss_pred             EEecCCccC--------cHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCC
Confidence            999999965        3567888999999999999998 65 455 68999999999999999995 55 788999999


Q ss_pred             eeeccCCCCCC
Q 019584          251 FLGLCGGPLSK  261 (338)
Q Consensus       251 ~L~l~~N~l~~  261 (338)
                      +|++++|++.+
T Consensus       185 ~L~l~~N~i~~  195 (197)
T 4ezg_A          185 QLYAFSQTIGG  195 (197)
T ss_dssp             EEEECBC----
T ss_pred             EEEeeCcccCC
Confidence            99999999865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=5e-19  Score=162.51  Aligned_cols=180  Identities=20%  Similarity=0.213  Sum_probs=123.8

Q ss_pred             CCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEE
Q 019584           78 DCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHL  148 (338)
Q Consensus        78 ~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  148 (338)
                      ..|.|+.+.|...         .++++.|++++|.+.+..+.  .+.++++|++|++++|.++.. .|..+.++++|++|
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKL  107 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEE
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEE
Confidence            3478999998632         34789999999999887766  788999999999999998764 67888888888888


Q ss_pred             EcccccCccccchh----------------------hcCCCCCCEEEccCCCCCcccccccCCCcchhhcCC--------
Q 019584          149 NLSQSYFSGQIPAE----------------------LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL--------  198 (338)
Q Consensus       149 ~Ls~n~l~~~~p~~----------------------l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l--------  198 (338)
                      ++++|.++ .+|..                      +..+++|++|++++|.++..      +..+..+..+        
T Consensus       108 ~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l~L~~L~l~  180 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS------GFEPGAFDGLKLNYLRIS  180 (332)
T ss_dssp             ECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG------GSCTTSSCSCCCSCCBCC
T ss_pred             ECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC------CCCcccccCCccCEEECc
Confidence            88888877 45543                      33444444444444443210      0111111111        


Q ss_pred             ------------CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          199 ------------TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       199 ------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                                  ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..
T Consensus       181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~  259 (332)
T 2ft3_A          181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG  259 (332)
T ss_dssp             SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred             CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence                        35666666666666655666777777888888888877666667777778888888888777 56654


Q ss_pred             CC
Q 019584          267 EA  268 (338)
Q Consensus       267 ~~  268 (338)
                      ..
T Consensus       260 l~  261 (332)
T 2ft3_A          260 LP  261 (332)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=2.3e-19  Score=171.20  Aligned_cols=168  Identities=23%  Similarity=0.201  Sum_probs=118.2

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccch-hhcCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPA-ELLELSNL  169 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L  169 (338)
                      ..+++.|+|++|.+++..+.  .+..+++|++|++++|.++.. .+..+.++++|++|++++|...+.++. .+..+++|
T Consensus       111 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  187 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNG--AFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL  187 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTT--TSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred             CccCCEEECCCCcCCeeCHh--HhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence            46788888988888866555  677888888888888887643 334555556666666655332223332 34455555


Q ss_pred             CEEEccCCCCCccc-----------------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccc
Q 019584          170 EVLDLSYSNFDTFY-----------------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG  232 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~-----------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  232 (338)
                      ++|++++|+++.++                 ++   ...|..+..+++|++|++++|.+++..+..+..+++|++|+|++
T Consensus       188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS---AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CeecCCCCcCccccccCCCcccCEEECCCCccC---ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            55555555443211                 11   23356778888888888888888887788888889999999999


Q ss_pred             ccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          233 CRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       233 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      |++++..+..+..+++|+.|++++|++.|+|.
T Consensus       265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             SCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             CCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            99996666677888999999999999999885

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=1.4e-19  Score=165.06  Aligned_cols=166  Identities=19%  Similarity=0.088  Sum_probs=121.7

Q ss_pred             CCcEEEEEeCCCCceeecCCCCcc--ccCcCccEEEccCCCCCCCCCchhhhcC-----CCCcEEEcccccCccccchhh
Q 019584           91 TGHVVELDLASSCLYGSINSTSSL--FQLVHLQRLSLFDNNFNFSEIPSAILNF-----SRLTHLNLSQSYFSGQIPAEL  163 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l  163 (338)
                      ..++++|++++|.+++.+|.  .+  ..+++|++|++++|.+++  .|..+..+     ++|++|++++|++++..|..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPP--PLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             cCCccEEEccCCcccchhHH--HHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            45788899999988887777  54  788899999999998875  46677766     889999999999887666888


Q ss_pred             cCCCCCCEEEccCCCCCcccccccCCCcchhh--cCCCCCCEEEccCCCCCC--CCc-hhcccCCCCCeeecccccCccc
Q 019584          164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLA--ENLTNLKALDLINVHISS--TVP-HTLANLSSLRFSSLSGCRLQGE  238 (338)
Q Consensus       164 ~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~  238 (338)
                      ..+++|++|++++|++.+.      ...+..+  ..+++|++|++++|.+++  .++ ..+..+++|++|++++|++++.
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGE------RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHH------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             ccCCCCCEEECCCCCcCcc------hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence            8888999999998885420      0123333  677888888888888873  122 2334667888888888888866


Q ss_pred             Cc-hhccCCCCCCeeeccCCCCCCcCCCCC
Q 019584          239 FP-QEIFQLPNLQFLGLCGGPLSKKCNNSE  267 (338)
Q Consensus       239 ~p-~~l~~l~~L~~L~l~~N~l~~~~p~~~  267 (338)
                      +| ..+..+++|++|++++|.++ .+|...
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             cchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            54 34555678888888888887 566544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=5.1e-19  Score=153.23  Aligned_cols=154  Identities=17%  Similarity=0.165  Sum_probs=132.5

Q ss_pred             CCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584           77 KDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH  147 (338)
Q Consensus        77 ~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~  147 (338)
                      ...|.|..+.|...         ...++.|+|++|.+++..+. ..+..+++|++|++++|.++.. .+..+.++++|++
T Consensus         8 ~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~   85 (220)
T 2v70_A            8 KCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEAT-GIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNE   85 (220)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCC-CCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred             CCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCch-hhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCE
Confidence            34488999998642         24678999999999977543 1578999999999999999864 5668999999999


Q ss_pred             EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584          148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF  227 (338)
Q Consensus       148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  227 (338)
                      |+|++|.+++..+..+..+++|++|+|++|+++        +..|..+..+++|++|++++|++++..|..+..+++|++
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT--------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC--------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCC--------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            999999999777778999999999999999975        455778899999999999999999988999999999999


Q ss_pred             eecccccCcccCc
Q 019584          228 SSLSGCRLQGEFP  240 (338)
Q Consensus       228 L~Ls~N~l~~~~p  240 (338)
                      |++++|.+.+..+
T Consensus       158 L~L~~N~l~c~c~  170 (220)
T 2v70_A          158 LNLLANPFNCNCY  170 (220)
T ss_dssp             EECCSCCEECSGG
T ss_pred             EEecCcCCcCCCc
Confidence            9999999986543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.80  E-value=4.3e-20  Score=184.30  Aligned_cols=164  Identities=13%  Similarity=0.248  Sum_probs=143.1

Q ss_pred             CCcEEEEEeCCCCceee-----------------cCCCCccc--cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcc
Q 019584           91 TGHVVELDLASSCLYGS-----------------INSTSSLF--QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLS  151 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~-----------------~~~~~~l~--~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls  151 (338)
                      ..++++|+|++|.+++.                 +|.  .+.  ++++|++|++++|.+.+. +|..+.++++|++|+++
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVA  281 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECc
Confidence            46899999999999985                 777  788  999999999999999876 99999999999999999


Q ss_pred             ccc-Ccc-ccchhhcCC------CCCCEEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCCCCCCCchhccc
Q 019584          152 QSY-FSG-QIPAELLEL------SNLEVLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVHISSTVPHTLAN  221 (338)
Q Consensus       152 ~n~-l~~-~~p~~l~~l------~~L~~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  221 (338)
                      +|+ ++| .+|..++.+      ++|++|++++|+++         .+|.  .+.++++|++|++++|.++|.+| .++.
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~  351 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS  351 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence            998 998 899988876      99999999999964         5677  88899999999999999998888 8888


Q ss_pred             CCCCCeeecccccCcccCchhccCCCC-CCeeeccCCCCCCcCCCCCCC
Q 019584          222 LSSLRFSSLSGCRLQGEFPQEIFQLPN-LQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       222 l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      +++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..
T Consensus       352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~  398 (636)
T 4eco_A          352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA  398 (636)
T ss_dssp             EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred             CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence            888888888888888 78888888888 888888888888 67765443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.7e-19  Score=177.03  Aligned_cols=145  Identities=24%  Similarity=0.301  Sum_probs=87.6

Q ss_pred             cccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcch
Q 019584          114 LFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLAN  193 (338)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~  193 (338)
                      +..+++|+.|++++|.+.....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++       +.+|.
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~p~  464 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------NFLPD  464 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-------GEECS
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc-------ccchh
Confidence            44455555555555555432111345556666666666666665555555666666666666665421       23555


Q ss_pred             hhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584          194 LAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       194 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      .+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+++|.||.
T Consensus       465 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            666666777777777766665566666666777777777776655555566666777777777777766663

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=2.6e-19  Score=176.03  Aligned_cols=161  Identities=21%  Similarity=0.276  Sum_probs=126.7

Q ss_pred             CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCC-CCchhhhcCCCCcEEEcccccCccccchh-hcCCC
Q 019584           90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFS-EIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELS  167 (338)
Q Consensus        90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~  167 (338)
                      ..+++++|++++|.+++..+.  .+.++++|++|++++|.+++. .+|..+.++++|++|++++|.+++.+|.. +..++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQ--GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTT--TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             CCCCceEEECCCCccccchhh--hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            346788888888888877776  788888899999998888752 13456788888999999998888756654 67788


Q ss_pred             CCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh-ccCC
Q 019584          168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE-IFQL  246 (338)
Q Consensus       168 ~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l  246 (338)
                      +|++|++++|+++        +..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+
T Consensus       429 ~L~~L~l~~n~l~--------~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  496 (562)
T 3a79_B          429 SILVLNLSSNMLT--------GSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL  496 (562)
T ss_dssp             TCCEEECCSSCCC--------GGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred             cCCEEECCCCCCC--------cchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence            8999999988864        23333322  68899999999888 57777778889999999999998 56665 7888


Q ss_pred             CCCCeeeccCCCCCCcCC
Q 019584          247 PNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       247 ~~L~~L~l~~N~l~~~~p  264 (338)
                      ++|+.|++++|++.|.||
T Consensus       497 ~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTCCCEECCSCCBCCCHH
T ss_pred             CCCCEEEecCCCcCCCcc
Confidence            889999999999998876

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=3.8e-19  Score=182.91  Aligned_cols=178  Identities=22%  Similarity=0.193  Sum_probs=150.0

Q ss_pred             cccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcccc
Q 019584           80 CSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQI  159 (338)
Q Consensus        80 c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  159 (338)
                      |.|..|.+  .++++++|||++|.+++..+.  .+.++++|++|+|++|.......|..+.++++|++|+|++|.+++..
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            45555555  457899999999999988877  89999999999999997654423788999999999999999999888


Q ss_pred             chhhcCCCCCCEEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCc
Q 019584          160 PAELLELSNLEVLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       160 p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      |..|..+++|++|+|++|.++        +.++.  .+.++++|++|++++|.+++..+ ..++++++|++|+|++|.++
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLS--------DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCS--------SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             HhHccCCcccCEeeCcCCCCC--------cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            999999999999999999965        33444  38899999999999999987654 57899999999999999999


Q ss_pred             ccCchhccCC--CCCCeeeccCCCCCCcCCCCCCC
Q 019584          237 GEFPQEIFQL--PNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       237 ~~~p~~l~~l--~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      +..+..+..+  ++|+.|++++|.+.+..|.....
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~  196 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK  196 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhh
Confidence            8888888766  78889999999888877765443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.79  E-value=2.2e-19  Score=177.75  Aligned_cols=169  Identities=21%  Similarity=0.204  Sum_probs=145.0

Q ss_pred             CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      ..++++.|++++|.+.+..+.  .+..+++|+.|++++|.+++...+..+..+++|++|++++|.+++..|..+..+++|
T Consensus       374 ~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          374 NLSHLQSLNLSYNEPLSLKTE--AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TCTTCCEEECCSCSCEEECTT--TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred             cCCCCCEEECCCCcCCcCCHH--HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence            356899999999999988877  899999999999999999765334558899999999999999998888889999999


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL  249 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  249 (338)
                      ++|++++|++++..     ...+..+..+++|++|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|
T Consensus       452 ~~L~L~~n~l~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          452 QHLNLQGNHFPKGN-----IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             CEEECTTCBCGGGE-----ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CEEECCCCCCCccc-----cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence            99999999975311     1223568889999999999999998888889999999999999999998888999999999


Q ss_pred             CeeeccCCCCCCcCCCC
Q 019584          250 QFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       250 ~~L~l~~N~l~~~~p~~  266 (338)
                       .|++++|.+++..|..
T Consensus       527 -~L~L~~N~l~~~~~~~  542 (606)
T 3t6q_A          527 -YLNLASNHISIILPSL  542 (606)
T ss_dssp             -EEECCSSCCCCCCGGG
T ss_pred             -EEECcCCcccccCHhh
Confidence             9999999999766653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=7e-19  Score=176.51  Aligned_cols=166  Identities=21%  Similarity=0.135  Sum_probs=145.8

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      +.++++|++++|.+++..+.  .+.++++|++|++++|.++.. .|..+.++++|++|++++|.+++..+..|..+++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence            35899999999999987666  799999999999999999875 788999999999999999999954444799999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhcc--CCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF--QLPN  248 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~  248 (338)
                      +|++++|+++        ...+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.  .+++
T Consensus       101 ~L~L~~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A          101 ELHLMSNSIQ--------KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             EEECCSSCCC--------CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             EEECCCCccC--------ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            9999999965        34456789999999999999999998888899999999999999999977776654  5689


Q ss_pred             CCeeeccCCCCCCcCCCCC
Q 019584          249 LQFLGLCGGPLSKKCNNSE  267 (338)
Q Consensus       249 L~~L~l~~N~l~~~~p~~~  267 (338)
                      |++|++++|.+++..|..+
T Consensus       173 L~~L~L~~n~l~~~~~~~~  191 (680)
T 1ziw_A          173 LKKLELSSNQIKEFSPGCF  191 (680)
T ss_dssp             ESEEECTTCCCCCBCTTGG
T ss_pred             ccEEECCCCcccccChhhh
Confidence            9999999999998777543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=4e-19  Score=155.55  Aligned_cols=158  Identities=15%  Similarity=0.155  Sum_probs=115.9

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC-CCCCCCchhhhcCCCCcEEEccc-ccCccccchhhcCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN-FNFSEIPSAILNFSRLTHLNLSQ-SYFSGQIPAELLELSN  168 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~  168 (338)
                      ..+++.|++++|++++..+.  .+..+++|++|++++|. ++.. .+..+.++++|++|++++ |.+++..+..+..+++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             CCcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            35799999999999987766  78899999999999997 7643 445788999999999998 9999655567889999


Q ss_pred             CCEEEccCCCCCcccccccCCCcchhhcCCCCCC---EEEccCC-CCCCCCchhcccCCCCC-eeecccccCcccCchhc
Q 019584          169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLK---ALDLINV-HISSTVPHTLANLSSLR-FSSLSGCRLQGEFPQEI  243 (338)
Q Consensus       169 L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l  243 (338)
                      |++|++++|++++         +|. +..+++|+   +|++++| .+++..+..+..+++|+ +|++++|+++ .+|...
T Consensus       107 L~~L~l~~n~l~~---------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~  175 (239)
T 2xwt_C          107 LKFLGIFNTGLKM---------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA  175 (239)
T ss_dssp             CCEEEEEEECCCS---------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred             CCEEeCCCCCCcc---------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence            9999999998653         343 55566665   7777777 66654445566666676 7777776666 444433


Q ss_pred             cCCCCCCeeeccCCC-CCCc
Q 019584          244 FQLPNLQFLGLCGGP-LSKK  262 (338)
Q Consensus       244 ~~l~~L~~L~l~~N~-l~~~  262 (338)
                      ...++|++|++++|+ ++..
T Consensus       176 ~~~~~L~~L~L~~n~~l~~i  195 (239)
T 2xwt_C          176 FNGTKLDAVYLNKNKYLTVI  195 (239)
T ss_dssp             TTTCEEEEEECTTCTTCCEE
T ss_pred             cCCCCCCEEEcCCCCCcccC
Confidence            333566666666664 5543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=167.97  Aligned_cols=164  Identities=19%  Similarity=0.199  Sum_probs=135.8

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .+++++|+|++|.+++..+.  .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.+++..|..+..+++|+
T Consensus        55 l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPG--AFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCccCEeChh--hhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence            46899999999999988777  899999999999999999753 445678999999999999999988888899999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|.++        ...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus       132 ~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  203 (477)
T 2id5_A          132 SLEVGDNDLV--------YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK  203 (477)
T ss_dssp             EEEECCTTCC--------EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred             EEECCCCccc--------eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence            9999999865        23456677888899999998888876667788888888888888888876666777777777


Q ss_pred             eeeccCCCCCCcCCC
Q 019584          251 FLGLCGGPLSKKCNN  265 (338)
Q Consensus       251 ~L~l~~N~l~~~~p~  265 (338)
                      .|++++|.+.+.+|.
T Consensus       204 ~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          204 VLEISHWPYLDTMTP  218 (477)
T ss_dssp             EEEEECCTTCCEECT
T ss_pred             eeeCCCCccccccCc
Confidence            777777766655553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=2.6e-19  Score=163.23  Aligned_cols=161  Identities=23%  Similarity=0.240  Sum_probs=132.8

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccC-----cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc--cchhh
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQL-----VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ--IPAEL  163 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l  163 (338)
                      .+++++|++++|.+++. +.  .+..+     ++|++|++++|.++.. .|..+.++++|++|++++|++.+.  +|..+
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~--~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DA--WLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SS--HHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             CCCccEEEccCCCCcch-hH--HHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            46899999999999877 65  67776     8999999999999865 668899999999999999998765  34455


Q ss_pred             --cCCCCCCEEEccCCCCCcccccccCCCcc-hhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCcccC
Q 019584          164 --LELSNLEVLDLSYSNFDTFYLKLQKPGLA-NLAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQGEF  239 (338)
Q Consensus       164 --~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~  239 (338)
                        ..+++|++|++++|++++.      ..++ ..+..+++|++|++++|.+++.+| ..+..+++|++|+|++|+++ .+
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i  268 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETP------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV  268 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCH------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred             HhccCCCCCEEECCCCcCcch------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence              7899999999999997531      1222 445688999999999999998764 45667899999999999999 78


Q ss_pred             chhccCCCCCCeeeccCCCCCCcCCC
Q 019584          240 PQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       240 p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      |..+.  ++|++|++++|.+++. |.
T Consensus       269 p~~~~--~~L~~L~Ls~N~l~~~-p~  291 (312)
T 1wwl_A          269 PKGLP--AKLSVLDLSYNRLDRN-PS  291 (312)
T ss_dssp             CSSCC--SEEEEEECCSSCCCSC-CC
T ss_pred             hhhcc--CCceEEECCCCCCCCC-hh
Confidence            87776  7899999999999886 44

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=6.8e-19  Score=174.33  Aligned_cols=158  Identities=19%  Similarity=0.131  Sum_probs=105.8

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      +++.|+|++|.+++..+.  .+..+++|++|+|++|.+++. .|..+.++++|++|+|++|.+++..+..+..+++|++|
T Consensus        76 ~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            456666666666666555  667777777777777777654 55566777777777777777773333335677777777


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc------------------------------------
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP------------------------------------  216 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p------------------------------------  216 (338)
                      ++++|.++        +..|..+..+++|++|++++|.+++..+                                    
T Consensus       153 ~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          153 SMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             ECCSSCCC--------BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred             EeeCCcCC--------CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence            77777754        3445567778888888888887764211                                    


Q ss_pred             -----------------------hhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCC
Q 019584          217 -----------------------HTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       217 -----------------------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                                             ..+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|.+++
T Consensus       225 ~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  292 (597)
T 3oja_B          225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  292 (597)
T ss_dssp             EEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred             ccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence                                   224455666677777777776666677777777777777777766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.78  E-value=7.1e-19  Score=165.03  Aligned_cols=109  Identities=20%  Similarity=0.205  Sum_probs=61.6

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh-hcCCCCCCE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELSNLEV  171 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~  171 (338)
                      ++++|++++|.+++..+.  .+..+++|++|++++|.++.. .|..+.++++|++|++++|.++ .+|.. +..+++|++
T Consensus        70 ~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT  145 (390)
T ss_dssp             CCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence            444555555555544443  455556666666666665543 4445556666666666666665 33333 355666666


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS  213 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  213 (338)
                      |++++|.++        ...+..+..+++|++|++++|.+++
T Consensus       146 L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          146 LSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             EECCSSCCC--------BCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             EECCCCccC--------ccChhhccCCCCCCEEECCCCcCCc
Confidence            666666543        2334456667777777777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=3.9e-19  Score=182.08  Aligned_cols=164  Identities=17%  Similarity=0.269  Sum_probs=143.1

Q ss_pred             CCCcEEEEEeCCCCcee-----------------ecCCCCccc--cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEc
Q 019584           90 DTGHVVELDLASSCLYG-----------------SINSTSSLF--QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNL  150 (338)
Q Consensus        90 ~~~~l~~L~Ls~n~l~~-----------------~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L  150 (338)
                      ..++++.|+|++|.+++                 .+|.  .++  ++++|++|+|++|.+.+. +|..+.++++|++|+|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEEC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEEC
Confidence            34689999999999998                 3777  766  999999999999999876 9999999999999999


Q ss_pred             cccc-Ccc-ccchhhcCCC-------CCCEEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCCCCCCCchhc
Q 019584          151 SQSY-FSG-QIPAELLELS-------NLEVLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVHISSTVPHTL  219 (338)
Q Consensus       151 s~n~-l~~-~~p~~l~~l~-------~L~~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l  219 (338)
                      ++|+ +++ .+|..++.++       +|++|++++|+++         .+|.  .+.++++|++|++++|.++ .+| .+
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~  591 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF  591 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---------ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence            9998 998 8888776655       9999999999964         5677  8899999999999999998 677 88


Q ss_pred             ccCCCCCeeecccccCcccCchhccCCCC-CCeeeccCCCCCCcCCCCCCC
Q 019584          220 ANLSSLRFSSLSGCRLQGEFPQEIFQLPN-LQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       220 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      +.+++|+.|+|++|+++ .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus       592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~  640 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA  640 (876)
T ss_dssp             CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred             cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence            89999999999999999 88888888888 999999999988 67765543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=1.5e-18  Score=170.28  Aligned_cols=167  Identities=22%  Similarity=0.184  Sum_probs=146.1

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      +.+++.|++++|.+++..+.  .+.++++|++|++++|.++.. .+..+.++++|++|++++|.+++..|..|..+++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             cccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence            35799999999999988777  899999999999999999864 567899999999999999999977778899999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL  249 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  249 (338)
                      +|++++|+++.        ..+..+.++++|++|++++|.+++ .+|..++++++|++|++++|++++..|..+..+++|
T Consensus       104 ~L~L~~n~l~~--------l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          104 KLVAVETNLAS--------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             EEECTTSCCCC--------STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             ccccccccccc--------CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            99999999753        222358899999999999999987 479999999999999999999998778888887777


Q ss_pred             ----CeeeccCCCCCCcCCCCCC
Q 019584          250 ----QFLGLCGGPLSKKCNNSEA  268 (338)
Q Consensus       250 ----~~L~l~~N~l~~~~p~~~~  268 (338)
                          +.+++++|.+++..|..+.
T Consensus       176 ~~~~~~L~l~~n~l~~~~~~~~~  198 (570)
T 2z63_A          176 PLLNLSLDLSLNPMNFIQPGAFK  198 (570)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTT
T ss_pred             chhhhhcccCCCCceecCHHHhc
Confidence                8999999999987765443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=1.3e-18  Score=147.49  Aligned_cols=159  Identities=21%  Similarity=0.238  Sum_probs=111.8

Q ss_pred             EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCch-hhhcCCCCcEEEcccccCccccchhhcCCCCCCEEE
Q 019584           95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLD  173 (338)
Q Consensus        95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  173 (338)
                      +.+++++++++ .+|.  .+.  .+|+.|++++|.++.. .+. .+..+++|++|+|++|.+++..|..+..+++|++|+
T Consensus        11 ~~l~~s~~~l~-~ip~--~~~--~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPR--DIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCS-SCCS--CCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCcC-cCcc--CCC--CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            35677777775 4444  333  3888999999988753 332 478889999999999999877788888889999999


Q ss_pred             ccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeee
Q 019584          174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLG  253 (338)
Q Consensus       174 Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  253 (338)
                      |++|+++        +..+..+..+++|++|++++|++++..|..+..+++|++|+|++|.+++..+-... ...++...
T Consensus        85 Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~  155 (192)
T 1w8a_A           85 LGENKIK--------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKS  155 (192)
T ss_dssp             CCSCCCC--------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHC
T ss_pred             CCCCcCC--------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcC
Confidence            9999865        33445577888888888888888887788888888888888888888865442110 01122223


Q ss_pred             ccCCCCCCcCCCCCC
Q 019584          254 LCGGPLSKKCNNSEA  268 (338)
Q Consensus       254 l~~N~l~~~~p~~~~  268 (338)
                      +.++...|.-|....
T Consensus       156 ~~~~~~~C~~P~~l~  170 (192)
T 1w8a_A          156 LNGGAARCGAPSKVR  170 (192)
T ss_dssp             CSGGGCBBCSSTTTT
T ss_pred             CCCCCCCCCCChHHc
Confidence            445555665565443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=2.3e-18  Score=157.94  Aligned_cols=171  Identities=19%  Similarity=0.163  Sum_probs=119.5

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcc--ccchhhcCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSG--QIPAELLELSN  168 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~  168 (338)
                      ..++++|++++|.++. ++.  .+.  ++|++|++++|.++.. .+..+.++++|++|++++|.++.  ..+..+..+++
T Consensus        99 l~~L~~L~Ls~n~l~~-l~~--~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  172 (330)
T 1xku_A           99 LVKLERLYLSKNQLKE-LPE--KMP--KTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  172 (330)
T ss_dssp             CTTCCEEECCSSCCSB-CCS--SCC--TTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             CCCCCEEECCCCcCCc-cCh--hhc--ccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence            3578888888888873 333  222  6777777777777653 45567777777777777777752  45556667777


Q ss_pred             CCEEEccCCCCCccccc---------ccC----CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccC
Q 019584          169 LEVLDLSYSNFDTFYLK---------LQK----PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRL  235 (338)
Q Consensus       169 L~~L~Ls~N~l~~~~l~---------~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  235 (338)
                      |++|++++|.++.++..         +..    ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       173 L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             CCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             cCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            77777777665432100         000    12355677888888888888888876666788888888888888888


Q ss_pred             cccCchhccCCCCCCeeeccCCCCCCcCCCCCC
Q 019584          236 QGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEA  268 (338)
Q Consensus       236 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~  268 (338)
                      + .+|..+..+++|++|++++|++++..+..++
T Consensus       253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             c-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            8 7787888888888888888888876555444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=3.9e-18  Score=168.86  Aligned_cols=169  Identities=18%  Similarity=0.144  Sum_probs=114.6

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..+++.|+|++|.+++..+.  .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.+++..|..+..+++|+
T Consensus        98 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B           98 AHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCCCCCHH--HHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence            34677777777777766655  667777777777777777642 333457777777777777777766666777777777


Q ss_pred             EEEccCCCCCccccccc---------------------------------------------------CCCcchhhcCCC
Q 019584          171 VLDLSYSNFDTFYLKLQ---------------------------------------------------KPGLANLAENLT  199 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~---------------------------------------------------~~~~~~~~~~l~  199 (338)
                      +|++++|.+++..+...                                                   ...-+..+..++
T Consensus       175 ~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~  254 (597)
T 3oja_B          175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP  254 (597)
T ss_dssp             EEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCT
T ss_pred             EEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCC
Confidence            77777777664311100                                                   000123356677


Q ss_pred             CCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          200 NLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       200 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      +|++|++++|.+++.+|..++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++. +|
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~  317 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VE  317 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CG
T ss_pred             CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cC
Confidence            77777777777777777777777777777777777774 56666667777777777777773 44

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=7.7e-19  Score=159.85  Aligned_cols=163  Identities=17%  Similarity=0.075  Sum_probs=111.5

Q ss_pred             CcEEEEEeCCCCceeecCCCCcc--ccCcCccEEEccCCCCCCCCCc----hhhhcCCCCcEEEcccccCccccchhhcC
Q 019584           92 GHVVELDLASSCLYGSINSTSSL--FQLVHLQRLSLFDNNFNFSEIP----SAILNFSRLTHLNLSQSYFSGQIPAELLE  165 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  165 (338)
                      .++++|++++|.+.+..+.  .+  ..+++|++|++++|.+++. .+    ..+..+++|++|+|++|.+++..+..+..
T Consensus        91 ~~L~~L~l~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPP--LPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCC--CSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             CceeEEEeeCCEeccchhh--hhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            3599999999999988877  66  8899999999999998764 33    34457899999999999998777788899


Q ss_pred             CCCCCEEEccCCCCCcccccccCCCcc--hhhcCCCCCCEEEccCCCCCCCCch----hcccCCCCCeeecccccCcccC
Q 019584          166 LSNLEVLDLSYSNFDTFYLKLQKPGLA--NLAENLTNLKALDLINVHISSTVPH----TLANLSSLRFSSLSGCRLQGEF  239 (338)
Q Consensus       166 l~~L~~L~Ls~N~l~~~~l~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~  239 (338)
                      +++|++|++++|++.+.      ..++  ..+..+++|++|++++|+++. ++.    .++.+++|++|+|++|++++..
T Consensus       168 l~~L~~L~Ls~N~l~~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  240 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGE------RGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATV  240 (310)
T ss_dssp             CTTCCEEECCSCTTCHH------HHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred             CCCCCEEECCCCCCccc------hhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence            99999999999986421      0011  122455666666666666642 222    1345566666666666666554


Q ss_pred             chhccCC---CCCCeeeccCCCCCCcCCC
Q 019584          240 PQEIFQL---PNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       240 p~~l~~l---~~L~~L~l~~N~l~~~~p~  265 (338)
                      |..+..+   ++|++|++++|.++ .+|.
T Consensus       241 p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~  268 (310)
T 4glp_A          241 NPSAPRCMWSSALNSLNLSFAGLE-QVPK  268 (310)
T ss_dssp             CSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred             hhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence            5555444   46666666666665 3444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=1.4e-18  Score=169.82  Aligned_cols=169  Identities=20%  Similarity=0.222  Sum_probs=104.8

Q ss_pred             CCcEEEEEeCCCCceeecCC-CCccccCcCccEEEccCCCCCCCCCc---hhhhcCCCCcEEEcccccCccccchhhcCC
Q 019584           91 TGHVVELDLASSCLYGSINS-TSSLFQLVHLQRLSLFDNNFNFSEIP---SAILNFSRLTHLNLSQSYFSGQIPAELLEL  166 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  166 (338)
                      .++++.|++++|.+.+..+. ...+..+++|++|++++|.++.  ++   ..+..+++|++|++++|+++ .+|..+..+
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence            35788888888888775532 0146778888889999888864  33   45788889999999999888 788888888


Q ss_pred             CCCCEEEccCCCCCccccc---------ccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc
Q 019584          167 SNLEVLDLSYSNFDTFYLK---------LQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       167 ~~L~~L~Ls~N~l~~~~l~---------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  237 (338)
                      ++|++|++++|+++.+.-.         +....+......+++|++|++++|+++ .+|. ...+++|++|+|++|++++
T Consensus       410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred             ccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence            8889999988887532100         000011111224455555555555555 3443 3445555555555555555


Q ss_pred             cCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          238 EFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       238 ~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      .+|..+..+++|+.|++++|++.|.||
T Consensus       488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          488 VPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCHHHHhcCcccCEEEecCCCccCCCc
Confidence            444445555555555555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=7.8e-18  Score=157.89  Aligned_cols=88  Identities=17%  Similarity=0.177  Sum_probs=69.8

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCch-hhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      ..++++|++++|.+.+..+.  .+.++++|++|++++|.++.  +|. .+.++++|++|++++|.+++..|..+..+++|
T Consensus        92 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             CCCcCEEECCCCCCCcCCHH--HhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence            45788888888888876666  77888888888888888874  444 35788888888888888886667778888888


Q ss_pred             CEEEccCCCCCcc
Q 019584          170 EVLDLSYSNFDTF  182 (338)
Q Consensus       170 ~~L~Ls~N~l~~~  182 (338)
                      ++|++++|++++.
T Consensus       168 ~~L~l~~n~l~~~  180 (390)
T 3o6n_A          168 QNLQLSSNRLTHV  180 (390)
T ss_dssp             CEEECCSSCCSBC
T ss_pred             CEEECCCCcCCcc
Confidence            8888888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.76  E-value=5.9e-18  Score=155.37  Aligned_cols=174  Identities=18%  Similarity=0.157  Sum_probs=130.0

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCC---------------------CCCCchhhhcCCCCcEEE
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFN---------------------FSEIPSAILNFSRLTHLN  149 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~---------------------~~~~p~~l~~l~~L~~L~  149 (338)
                      ..++++|++++|.+++..+.  .+.++++|++|++++|.++                     .. .+..+.++++|++|+
T Consensus        77 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEK--AFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE  153 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGG--GSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEE
T ss_pred             CCCCcEEECCCCccCccCHh--HhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCcc-CHhHhCCCccCCEEE
Confidence            35677777777777766555  5666666666666666553                     21 234578899999999


Q ss_pred             cccccCc--cccchhhcCCCCCCEEEccCCCCCccccc---------ccC----CCcchhhcCCCCCCEEEccCCCCCCC
Q 019584          150 LSQSYFS--GQIPAELLELSNLEVLDLSYSNFDTFYLK---------LQK----PGLANLAENLTNLKALDLINVHISST  214 (338)
Q Consensus       150 Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~---------~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~  214 (338)
                      +++|.++  +..+..+..+ +|++|++++|++++++..         +..    ...+..+..+++|++|++++|.+++.
T Consensus       154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             CCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence            9999986  3566666666 677777777765542110         000    23346788899999999999999998


Q ss_pred             CchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584          215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       215 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      .+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..
T Consensus       233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            8888999999999999999999 88999999999999999999999866655544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.76  E-value=5.5e-18  Score=170.00  Aligned_cols=173  Identities=21%  Similarity=0.227  Sum_probs=101.1

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCC-CCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNF-SEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      ..++++|++++|.+.+..+.  .+..+++|+.|++++|.++. ..+|..+.++++|++|++++|++++..+..+..+++|
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L  506 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL  506 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTT--TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccccEEecCCCCcceeChh--hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence            35677788888777655444  44455555555555554431 1134444555555555555555553333344444555


Q ss_pred             CEEEccCCCCCcccccc--------------------c---CCCcc-hhhcCCCCCCEEEccCCCCCCCCchhcccCCCC
Q 019584          170 EVLDLSYSNFDTFYLKL--------------------Q---KPGLA-NLAENLTNLKALDLINVHISSTVPHTLANLSSL  225 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~--------------------~---~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  225 (338)
                      ++|++++|+++..+...                    .   -..+| ..+.++++|++|++++|++++..+..+..+++|
T Consensus       507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  586 (680)
T 1ziw_A          507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL  586 (680)
T ss_dssp             CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence            55555555443210000                    0   01233 346777777777777777776555556777788


Q ss_pred             CeeecccccCcccCchhcc-CCCCCCeeeccCCCCCCcCCC
Q 019584          226 RFSSLSGCRLQGEFPQEIF-QLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       226 ~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      +.|++++|++++..+..+. .+++|+.+++++|++.|.|+.
T Consensus       587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            8888888888766665565 577888888888888888873

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=3.7e-18  Score=169.04  Aligned_cols=162  Identities=22%  Similarity=0.274  Sum_probs=126.1

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCc-cccchhhcCCCCCCE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS-GQIPAELLELSNLEV  171 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~  171 (338)
                      +++.+++++++.....+. ..+..+.+++.++++.|.+... .+..+..++.|++|++++|.+. +..|..+..+++|++
T Consensus       421 ~L~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~  498 (635)
T 4g8a_A          421 QLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  498 (635)
T ss_dssp             TCCEEECTTSEEESTTSS-CTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cccchhhhhccccccccc-cccccccccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence            445555555544433221 2456777888888888887754 6777788888999999888754 456777888899999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCC-CCCC
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQL-PNLQ  250 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~  250 (338)
                      |+|++|+++        +..|..+.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|+.+..+ ++|+
T Consensus       499 L~Ls~N~L~--------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~  570 (635)
T 4g8a_A          499 LDLSQCQLE--------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  570 (635)
T ss_dssp             EECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred             EECCCCccC--------CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence            999999865        3456778889999999999999988878888889999999999999998888888877 5799


Q ss_pred             eeeccCCCCCCcCC
Q 019584          251 FLGLCGGPLSKKCN  264 (338)
Q Consensus       251 ~L~l~~N~l~~~~p  264 (338)
                      +|++++|++.|+|.
T Consensus       571 ~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          571 FLNLTQNDFACTCE  584 (635)
T ss_dssp             EEECTTCCBCCSGG
T ss_pred             EEEeeCCCCcccCC
Confidence            99999999999886

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=5.6e-19  Score=178.54  Aligned_cols=207  Identities=20%  Similarity=0.243  Sum_probs=123.3

Q ss_pred             CCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEcCCCCcEEEEEe----------------
Q 019584           36 CHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDL----------------   99 (338)
Q Consensus        36 ~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~l~~L~L----------------   99 (338)
                      ..+.++.+|++++.......+.        ....|..  .....+.|.++.+..  ++++.|+|                
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l  196 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTA--------KKQQPTG--DSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHK  196 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTT--------C-------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCc--------ccCCCcC--CCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcC
Confidence            4567889999999887654442        2334531  223345666655532  23444444                


Q ss_pred             --CCCCceee---------cCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCC
Q 019584          100 --ASSCLYGS---------INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSN  168 (338)
Q Consensus       100 --s~n~l~~~---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  168 (338)
                        +.+.|.+.         .+.  .+..++.|+.|+|++|.+. . +|..+..+++|++|+|++|.++ .+|..+..+++
T Consensus       197 ~Ls~~~i~~~~~~~n~~~~~~~--~~~~l~~L~~L~Ls~n~l~-~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  271 (727)
T 4b8c_D          197 KLSQYSIDEDDDIENRMVMPKD--SKYDDQLWHALDLSNLQIF-N-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN  271 (727)
T ss_dssp             ---------------------------CCCCCCEEECTTSCCS-C-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred             ccCcccccCccccccceecChh--hhccCCCCcEEECCCCCCC-C-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence              44333321         122  5667788888888888886 2 7777778888888888888888 78888888888


Q ss_pred             CCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCC-
Q 019584          169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLP-  247 (338)
Q Consensus       169 L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-  247 (338)
                      |++|+|++|.|+         .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+++.+|..+..+. 
T Consensus       272 L~~L~Ls~N~l~---------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~  341 (727)
T 4b8c_D          272 LRVLDLSHNRLT---------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV  341 (727)
T ss_dssp             CCEEECTTSCCS---------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH
T ss_pred             CCEEeCcCCcCC---------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch
Confidence            888888888863         45777788888888888888886 5777788888888888888888887777665432 


Q ss_pred             CCCeeeccCCCCCCcCCCCCCC
Q 019584          248 NLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       248 ~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      .+..+++++|.+++.+|.....
T Consensus       342 ~~~~l~l~~N~l~~~~p~~l~~  363 (727)
T 4b8c_D          342 TGLIFYLRDNRPEIPLPHERRF  363 (727)
T ss_dssp             HHHHHHHHHCCCCCCCCCC---
T ss_pred             hhhHHhhccCcccCcCccccce
Confidence            2234678888888888875543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.3e-18  Score=161.02  Aligned_cols=164  Identities=19%  Similarity=0.137  Sum_probs=139.9

Q ss_pred             CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccch--hhcCCC
Q 019584           90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPA--ELLELS  167 (338)
Q Consensus        90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~  167 (338)
                      ..++++.|++++|.+++..+.  .+.++++|++|++++|.++.. .+..+.++++|++|++++|.++ .+|.  .+..++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~  149 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEED--SFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT  149 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCT
T ss_pred             cCCCCCEEECCCCccCccCHh--hcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCC
Confidence            346899999999999987777  899999999999999999853 4445899999999999999999 5665  788999


Q ss_pred             CCCEEEccCCC-CCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh-ccC
Q 019584          168 NLEVLDLSYSN-FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE-IFQ  245 (338)
Q Consensus       168 ~L~~L~Ls~N~-l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~  245 (338)
                      +|++|++++|+ ++        ...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|.. +..
T Consensus       150 ~L~~L~l~~n~~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~  220 (353)
T 2z80_A          150 KLQILRVGNMDTFT--------KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDV  220 (353)
T ss_dssp             TCCEEEEEESSSCC--------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHH
T ss_pred             CCcEEECCCCcccc--------ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhh
Confidence            99999999995 43        233567889999999999999999888999999999999999999997 45544 456


Q ss_pred             CCCCCeeeccCCCCCCcCCCC
Q 019584          246 LPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       246 l~~L~~L~l~~N~l~~~~p~~  266 (338)
                      +++|+.|++++|.+++..+..
T Consensus       221 ~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          221 TSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             TTTEEEEEEESCBCTTCCCC-
T ss_pred             cccccEEECCCCccccccccc
Confidence            899999999999999865543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.4e-17  Score=144.97  Aligned_cols=138  Identities=22%  Similarity=0.164  Sum_probs=122.0

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..+++.|+|++|.+++..+.  .+..+++|++|+|++|.++.. .+..+..+++|++|+|++|.+++..+..+..+++|+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  115 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK  115 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCEEEcCCCccCccCHH--HhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence            46899999999999988777  899999999999999999753 456678999999999999999966666688999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCc
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP  240 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  240 (338)
                      +|++++|+++         .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+
T Consensus       116 ~L~Ls~N~l~---------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          116 ELFMCCNKLT---------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             EEECCSSCCC---------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             eEeccCCccc---------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9999999974         567788999999999999999998777789999999999999999986543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=4.7e-18  Score=148.74  Aligned_cols=158  Identities=15%  Similarity=0.175  Sum_probs=133.4

Q ss_pred             CCcEEEEEeCCCC-ceeecCCCCccccCcCccEEEccC-CCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCC
Q 019584           91 TGHVVELDLASSC-LYGSINSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSN  168 (338)
Q Consensus        91 ~~~l~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  168 (338)
                      .++++.|++++|. ++...+.  .+.++++|++|++++ |.++.. .+..+.++++|++|++++|.+++ +|. +..+++
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~  128 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS  128 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred             CCCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc
Confidence            4689999999997 8876666  789999999999998 999753 45678899999999999999995 776 888888


Q ss_pred             CC---EEEccCC-CCCcccccccCCCcchhhcCCCCCC-EEEccCCCCCCCCchhcccCCCCCeeeccccc-CcccCchh
Q 019584          169 LE---VLDLSYS-NFDTFYLKLQKPGLANLAENLTNLK-ALDLINVHISSTVPHTLANLSSLRFSSLSGCR-LQGEFPQE  242 (338)
Q Consensus       169 L~---~L~Ls~N-~l~~~~l~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~  242 (338)
                      |+   +|++++| .++.        ..+..+..+++|+ +|++++|.++ .+|......++|+.|++++|+ +++..+..
T Consensus       129 L~~L~~L~l~~N~~l~~--------i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~  199 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTS--------IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA  199 (239)
T ss_dssp             CCSEEEEEEESCTTCCE--------ECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred             cccccEEECCCCcchhh--------cCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHH
Confidence            88   9999999 8642        2345688999999 9999999998 466554444899999999995 99666677


Q ss_pred             ccCC-CCCCeeeccCCCCCCc
Q 019584          243 IFQL-PNLQFLGLCGGPLSKK  262 (338)
Q Consensus       243 l~~l-~~L~~L~l~~N~l~~~  262 (338)
                      +..+ ++|+.|++++|++++.
T Consensus       200 ~~~l~~~L~~L~l~~N~l~~l  220 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQTSVTAL  220 (239)
T ss_dssp             TTTCSBCCSEEECTTCCCCCC
T ss_pred             hhccccCCcEEECCCCccccC
Confidence            8888 9999999999999853

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=2.4e-18  Score=156.62  Aligned_cols=161  Identities=20%  Similarity=0.181  Sum_probs=127.6

Q ss_pred             CCcEEEEEeCCCCceeecCCC--CccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc--cc--hhhc
Q 019584           91 TGHVVELDLASSCLYGSINST--SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ--IP--AELL  164 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p--~~l~  164 (338)
                      ..++++|++++|.+++..+..  ..+..+++|++|++++|.++.. .+..+..+++|++|+|++|++.+.  ++  ..+.
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            457899999999998754420  1345789999999999999765 677888999999999999998643  22  2236


Q ss_pred             CCCCCCEEEccCCCCCcccccccCCCcch-hhcCCCCCCEEEccCCCCCCCCchhcccC---CCCCeeecccccCcccCc
Q 019584          165 ELSNLEVLDLSYSNFDTFYLKLQKPGLAN-LAENLTNLKALDLINVHISSTVPHTLANL---SSLRFSSLSGCRLQGEFP  240 (338)
Q Consensus       165 ~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p  240 (338)
                      .+++|++|++++|+++..  .    ..+. .+..+++|++|++++|.+++..|+.+..+   ++|++|+|++|+++ .+|
T Consensus       195 ~l~~L~~L~Ls~N~l~~l--~----~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp  267 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETP--T----GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP  267 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCH--H----HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred             cCCCCCEEECCCCCCCch--H----HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence            789999999999997521  1    1111 35788999999999999998878877777   69999999999999 778


Q ss_pred             hhccCCCCCCeeeccCCCCCC
Q 019584          241 QEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       241 ~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      ..+.  ++|++|++++|.+++
T Consensus       268 ~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          268 KGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             SCCC--SCCSCEECCSCCCCS
T ss_pred             hhhc--CCCCEEECCCCcCCC
Confidence            7764  799999999999997

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=1.1e-17  Score=141.95  Aligned_cols=126  Identities=21%  Similarity=0.271  Sum_probs=71.6

Q ss_pred             EEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEcc
Q 019584           96 ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS  175 (338)
Q Consensus        96 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  175 (338)
                      .+++++++++ .+|.  .+  .++|+.|++++|.++.  +|..+.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus        14 ~l~~~~~~l~-~ip~--~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPK--GI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             EEECTTSCCS-SCCS--CC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCCC-cCCC--CC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            4566666665 2333  22  2466677777776652  55666666677777777776665555556666666666666


Q ss_pred             CCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584          176 YSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       176 ~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      +|+++        ...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        87 ~N~l~--------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLR--------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCC--------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccC--------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66643        222334555555555555555555433334455555555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.74  E-value=2e-17  Score=160.76  Aligned_cols=155  Identities=23%  Similarity=0.206  Sum_probs=126.2

Q ss_pred             EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584           95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL  174 (338)
Q Consensus        95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  174 (338)
                      +.||+++|+++ .+|.  .+.  ++|++|++++|.+++. .|..+.++++|++|++++|++++..|..+..+++|++|++
T Consensus         3 ~~l~ls~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence            46899999988 4555  444  8899999999998764 6678899999999999999999777888999999999999


Q ss_pred             cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCC--Ce
Q 019584          175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL--QF  251 (338)
Q Consensus       175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~  251 (338)
                      ++|+++         .+|..  .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++   ..+..+++|  ++
T Consensus        77 s~N~l~---------~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~  142 (520)
T 2z7x_B           77 SHNKLV---------KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISK  142 (520)
T ss_dssp             CSSCCC---------EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred             CCCcee---------ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeE
Confidence            999864         34544  78999999999999987 478889999999999999999885   345666777  99


Q ss_pred             eeccCCCC--CCcCCCCCCC
Q 019584          252 LGLCGGPL--SKKCNNSEAS  269 (338)
Q Consensus       252 L~l~~N~l--~~~~p~~~~~  269 (338)
                      |++++|.+  .+..|..+..
T Consensus       143 L~l~~n~l~~~~~~~~~l~~  162 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEGLQD  162 (520)
T ss_dssp             EEEEECTTTTSSCCTTTTTT
T ss_pred             EEeecccccccccccccccc
Confidence            99999998  7777766554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=1e-17  Score=172.26  Aligned_cols=168  Identities=23%  Similarity=0.227  Sum_probs=146.4

Q ss_pred             CCCcEEEEEeCCCCceeec-CCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh--hcCC
Q 019584           90 DTGHVVELDLASSCLYGSI-NSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE--LLEL  166 (338)
Q Consensus        90 ~~~~l~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l  166 (338)
                      ...++++|+|++|...+.+ +.  .+.++++|++|+|++|.++.. .|..+.++++|++|+|++|.+++.+|..  +..+
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            3468999999999776666 55  799999999999999999865 7889999999999999999999877765  8999


Q ss_pred             CCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccC--CCCCeeecccccCcccCchhcc
Q 019584          167 SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANL--SSLRFSSLSGCRLQGEFPQEIF  244 (338)
Q Consensus       167 ~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~l~  244 (338)
                      ++|++|++++|.+++       ...+..+.++++|++|++++|.+++..+..+..+  ++|+.|++++|.+++..|..+.
T Consensus       123 ~~L~~L~Ls~N~l~~-------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~  195 (844)
T 3j0a_A          123 KALTRLDLSKNQIRS-------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG  195 (844)
T ss_dssp             SSCCEEEEESCCCCC-------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred             CCCCEEECCCCcccc-------cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence            999999999999753       2344678999999999999999999889988887  8999999999999998887776


Q ss_pred             CCCC------CCeeeccCCCCCCcCCCCC
Q 019584          245 QLPN------LQFLGLCGGPLSKKCNNSE  267 (338)
Q Consensus       245 ~l~~------L~~L~l~~N~l~~~~p~~~  267 (338)
                      .+++      |+.|++++|.+++..|...
T Consensus       196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  224 (844)
T 3j0a_A          196 KCMNPFRNMVLEILDVSGNGWTVDITGNF  224 (844)
T ss_dssp             SSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred             hcCCccccCceeEEecCCCcCchhHHHHH
Confidence            6655      9999999999998877543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.73  E-value=2e-17  Score=162.44  Aligned_cols=139  Identities=19%  Similarity=0.252  Sum_probs=109.7

Q ss_pred             ccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcc--ccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          115 FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSG--QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       115 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      ..+++|++|++++|.+++. .|..+.++++|++|++++|++++  .+|..+..+++|++|++++|+++        +.+|
T Consensus       350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~--------~~~~  420 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN--------SHAY  420 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB--------SCCS
T ss_pred             cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC--------CccC
Confidence            5677888888888888765 77778888888888888888885  33456788888888888888864        3234


Q ss_pred             -hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          193 -NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       193 -~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                       ..+..+++|++|++++|.+++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..
T Consensus       421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  491 (562)
T 3a79_B          421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG  491 (562)
T ss_dssp             SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred             hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence             3467788889999999888876666544  68999999999998 78887788999999999999998 46654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=4.9e-17  Score=147.89  Aligned_cols=152  Identities=23%  Similarity=0.331  Sum_probs=72.9

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+.+..    .+..+++|++|++++|.++.  ++ .+..+++|++|++++|.+++ ++. +..+++|++
T Consensus        63 ~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~  133 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLA----PLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQV  133 (308)
T ss_dssp             TTCCEEECCSSCCCCCG----GGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCE
T ss_pred             CCCCEEEccCCcCCCCh----hHccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCE
Confidence            35556666665554322    24455555555555555542  22 35555555555555555552 222 455555555


Q ss_pred             EEccCCCCCccc-----------------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584          172 LDLSYSNFDTFY-----------------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR  234 (338)
Q Consensus       172 L~Ls~N~l~~~~-----------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  234 (338)
                      |++++|.+++..                 +    ..++. +..+++|++|++++|.+++..+  +..+++|++|++++|+
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQV----SDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCC----CCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcC----CCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence            555555543100                 0    01111 4445555555555555543222  4455555555555555


Q ss_pred             CcccCchhccCCCCCCeeeccCCCCCC
Q 019584          235 LQGEFPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       235 l~~~~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      +++..  .+..+++|+.|++++|++++
T Consensus       207 l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          207 ISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cCccc--cccCCCCCCEEEccCCeeec
Confidence            55322  24455555555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2.2e-17  Score=153.48  Aligned_cols=164  Identities=26%  Similarity=0.280  Sum_probs=134.1

Q ss_pred             CCcccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCc
Q 019584           78 DCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFS  156 (338)
Q Consensus        78 ~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~  156 (338)
                      ..|. ..-.|..     +.+++++++++. +|.  .+  ...++.|+|++|.++.. .+..+. ++++|++|+|++|+++
T Consensus        10 ~~Cp-~~C~C~~-----~~l~c~~~~l~~-iP~--~~--~~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~   77 (361)
T 2xot_A           10 VSCP-ANCLCAS-----NILSCSKQQLPN-VPQ--SL--PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLN   77 (361)
T ss_dssp             TTCC-TTCEEET-----TEEECCSSCCSS-CCS--SC--CTTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCC
T ss_pred             CCCC-CCCEECC-----CEEEeCCCCcCc-cCc--cC--CCCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCC
Confidence            3465 4567753     378999999874 444  33  24689999999999864 455566 8999999999999999


Q ss_pred             cccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584          157 GQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       157 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      +..+..|..+++|++|+|++|+++.        ..+..+..+++|++|+|++|.+++..|..+..+++|++|+|++|+++
T Consensus        78 ~i~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           78 FISSEAFVPVPNLRYLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccChhhccCCCCCCEEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            7777789999999999999999752        34456889999999999999999888899999999999999999999


Q ss_pred             ccCchh-c---cCCCCCCeeeccCCCCCCc
Q 019584          237 GEFPQE-I---FQLPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       237 ~~~p~~-l---~~l~~L~~L~l~~N~l~~~  262 (338)
                      + +|.. +   ..+++|+.|++++|.++..
T Consensus       150 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          150 R-FPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             S-CCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             e-eCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            5 5544 4   5689999999999999863

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=1.1e-17  Score=152.69  Aligned_cols=132  Identities=20%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhh-cCCCCCCEEEccCCCCCcccccccCCCcchhh
Q 019584          117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL-LELSNLEVLDLSYSNFDTFYLKLQKPGLANLA  195 (338)
Q Consensus       117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~  195 (338)
                      +++|+.|++++|.++.. .+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++         ++. .
T Consensus       119 ~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~-~  187 (317)
T 3o53_A          119 GQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------VKG-Q  187 (317)
T ss_dssp             CSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------EEC-C
T ss_pred             cCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc---------ccc-c
Confidence            44556666666665542 34455556666666666666664444444 245666666666666432         111 1


Q ss_pred             cCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCC
Q 019584          196 ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       196 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      ..+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++.|
T Consensus       188 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence            235666666666666654 3444566666666666666666 455556666666666666666663

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=3.4e-17  Score=138.69  Aligned_cols=112  Identities=23%  Similarity=0.233  Sum_probs=65.8

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      ++++|++++|.+++..+. ..+..+++|++|+|++|.+++. .|..+.++++|++|+|++|++++..+..+..+++|++|
T Consensus        30 ~l~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCCCCSBCCS-CSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCCcCCccCCc-cccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            556666666666543322 1255666666666666666543 45556666666666666666665555556666666666


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST  214 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  214 (338)
                      ++++|+++        +..|..+..+++|++|++++|.+.+.
T Consensus       108 ~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          108 NLYDNQIS--------CVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECCSSCCC--------EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ECCCCcCC--------eeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            66666643        23345556666666666666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=9.6e-17  Score=144.82  Aligned_cols=148  Identities=28%  Similarity=0.324  Sum_probs=111.4

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .++++.|++++|.+++..    .+..+++|++|++++|.++.  ++ .+..+++|++|++++|.+++ + +.+..+++|+
T Consensus        67 l~~L~~L~L~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~  137 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIK----PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE  137 (291)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred             CCCCCEEEccCCccCCCc----ccccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCC
Confidence            357888888888877543    26778888888888888763  33 47788888888888888874 3 4577788888


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|++++         + ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus       138 ~L~l~~n~l~~---------~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~  203 (291)
T 1h6t_A          138 SLYLGNNKITD---------I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD  203 (291)
T ss_dssp             EEECCSSCCCC---------C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred             EEEccCCcCCc---------c-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            88888887642         2 457778888888888888886544  7788888888888888884 44 377888888


Q ss_pred             eeeccCCCCCC
Q 019584          251 FLGLCGGPLSK  261 (338)
Q Consensus       251 ~L~l~~N~l~~  261 (338)
                      .|++++|+++.
T Consensus       204 ~L~l~~n~i~~  214 (291)
T 1h6t_A          204 VLELFSQECLN  214 (291)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEECcCCcccC
Confidence            88888888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=1.9e-17  Score=136.86  Aligned_cols=134  Identities=25%  Similarity=0.268  Sum_probs=75.0

Q ss_pred             cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584          118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN  197 (338)
Q Consensus       118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~  197 (338)
                      ++|+.|++++|.++...+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|+++        ..+|..+..
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~   93 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF--------GGLDMLAEK   93 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC--------SCCCHHHHH
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc--------hHHHHHHhh
Confidence            44555555555554112454455555566666666655532  44555566666666666543        224555555


Q ss_pred             CCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCcccCc---hhccCCCCCCeeeccCCCCCC
Q 019584          198 LTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGEFP---QEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       198 l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      +++|++|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            666666666666665421 1556666666666666666664333   356666666666666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.6e-17  Score=146.90  Aligned_cols=148  Identities=23%  Similarity=0.262  Sum_probs=129.1

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+...  +  .+..+++|+.|++++|.++.  ++. +.++++|++|++++|.+++ ++ .+..+++|++
T Consensus        46 ~~L~~L~l~~~~i~~~--~--~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--Q--GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             CcccEEEccCCCcccC--h--hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            5799999999998754  2  68889999999999999985  444 9999999999999999984 44 4899999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|++++         + ..+..+++|++|++++|.+++.  +.+..+++|++|++++|++++..+  +..+++|+.
T Consensus       117 L~L~~n~i~~---------~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          117 LSLEHNGISD---------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             EECTTSCCCC---------C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             EECCCCcCCC---------C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence            9999999752         2 4578899999999999999975  678999999999999999996544  889999999


Q ss_pred             eeccCCCCCCc
Q 019584          252 LGLCGGPLSKK  262 (338)
Q Consensus       252 L~l~~N~l~~~  262 (338)
                      |++++|.+++.
T Consensus       183 L~L~~N~i~~l  193 (291)
T 1h6t_A          183 LYLSKNHISDL  193 (291)
T ss_dssp             EECCSSCCCBC
T ss_pred             EECCCCcCCCC
Confidence            99999999873

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=3.4e-17  Score=135.38  Aligned_cols=139  Identities=25%  Similarity=0.286  Sum_probs=120.1

Q ss_pred             CCcEEEEEeCCCCce-eecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           91 TGHVVELDLASSCLY-GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      .++++.|++++|.++ +.++.  .+..+++|++|++++|.++.  + ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             cccCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            468999999999998 67777  78999999999999999975  4 678899999999999999997788888889999


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc---hhcccCCCCCeeecccccCcccCchh
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP---HTLANLSSLRFSSLSGCRLQGEFPQE  242 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~~  242 (338)
                      ++|++++|.++++       ..+..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+. .+|..
T Consensus        98 ~~L~Ls~N~l~~~-------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A           98 THLNLSGNKLKDI-------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             CEEECBSSSCCSS-------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             CEEeccCCccCcc-------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            9999999997531       123678899999999999999997554   47899999999999999988 55543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=1.1e-16  Score=145.48  Aligned_cols=147  Identities=22%  Similarity=0.326  Sum_probs=104.7

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+...  +  .+..+++|++|++++|.++.  ++. +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus        41 ~~L~~L~l~~~~i~~l--~--~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~  111 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI--E--GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT  111 (308)
T ss_dssp             HTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred             CCcCEEEeeCCCccCc--h--hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence            5899999999998752  2  68889999999999999975  555 9999999999999999984 44 6899999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|++++         ++. +..+++|++|++++|.+++..+  +..+++|++|++++|++++ ++. +..+++|+.
T Consensus       112 L~l~~n~l~~---------~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~  177 (308)
T 1h6u_A          112 LDLTSTQITD---------VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT  177 (308)
T ss_dssp             EECTTSCCCC---------CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             EECCCCCCCC---------chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence            9999999764         222 5556666666666666654322  5555555555555555553 222 445555555


Q ss_pred             eeccCCCCCC
Q 019584          252 LGLCGGPLSK  261 (338)
Q Consensus       252 L~l~~N~l~~  261 (338)
                      |++++|.+++
T Consensus       178 L~l~~n~l~~  187 (308)
T 1h6u_A          178 LKADDNKISD  187 (308)
T ss_dssp             EECCSSCCCC
T ss_pred             EECCCCccCc
Confidence            5555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=1.2e-17  Score=161.34  Aligned_cols=135  Identities=19%  Similarity=0.163  Sum_probs=112.3

Q ss_pred             cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhc-CCCCCCEEEccCCCCCcccccccCCCcchh
Q 019584          116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELL-ELSNLEVLDLSYSNFDTFYLKLQKPGLANL  194 (338)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~  194 (338)
                      .+++|+.|++++|.+++. .|..+..+++|++|+|++|.+++..|..+. .+++|++|+|++|.+++         ++. 
T Consensus       118 ~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---------~~~-  186 (487)
T 3oja_A          118 RGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------VKG-  186 (487)
T ss_dssp             CCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------EEC-
T ss_pred             ccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc---------ccc-
Confidence            357888899999988764 677788899999999999999987887775 78999999999998753         222 


Q ss_pred             hcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcC
Q 019584          195 AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKC  263 (338)
Q Consensus       195 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  263 (338)
                      ...+++|++|++++|.+++ +|+.+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++.|.+
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcc
Confidence            3358999999999999987 5556889999999999999999 47888888999999999999998543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=6.1e-17  Score=135.04  Aligned_cols=112  Identities=22%  Similarity=0.193  Sum_probs=63.8

Q ss_pred             cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584          118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN  197 (338)
Q Consensus       118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~  197 (338)
                      ++|+.|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++        +..+..+..
T Consensus        28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~   98 (177)
T 2o6r_A           28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ--------SLPNGVFDK   98 (177)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTT
T ss_pred             CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc--------ccCHHHhhC
Confidence            5667777777776543 3444566666777777766666443444566666666666666643        222334455


Q ss_pred             CCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCccc
Q 019584          198 LTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE  238 (338)
Q Consensus       198 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  238 (338)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            55666666666655543333345555555555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=2.4e-17  Score=133.49  Aligned_cols=130  Identities=25%  Similarity=0.283  Sum_probs=92.4

Q ss_pred             CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhc
Q 019584          117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE  196 (338)
Q Consensus       117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~  196 (338)
                      .++|+.|++++|.++...+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.++        +.+|..+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~   85 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS--------GGLEVLAE   85 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC--------SCTHHHHH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc--------chHHHHhh
Confidence            456777777777776222666667777777777777777744  56777777888888887754        33666666


Q ss_pred             CCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCcccCc---hhccCCCCCCeeeccC
Q 019584          197 NLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQGEFP---QEIFQLPNLQFLGLCG  256 (338)
Q Consensus       197 ~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~l~~  256 (338)
                      .+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            777888888888877762 33677788888888888888875544   4677788888887763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=9.8e-18  Score=153.05  Aligned_cols=161  Identities=18%  Similarity=0.128  Sum_probs=104.9

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCch-----------------hhhcCCCCcEEEcccc
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS-----------------AILNFSRLTHLNLSQS  153 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~-----------------~l~~l~~L~~L~Ls~n  153 (338)
                      ..+++.|++++|.+++..    .+..+++|++|++++|.+++  ++.                 ....+++|++|++++|
T Consensus        57 l~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~--l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N  130 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQE--LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN  130 (317)
T ss_dssp             CTTCCEEECTTSCCEEEE----EETTCTTCCEEECCSSEEEE--EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS
T ss_pred             CCcCCEEECCCCcCCcch----hhhhcCCCCEEECcCCcccc--ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC
Confidence            356777777777776544    26677777777777776643  110                 0112345555566666


Q ss_pred             cCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhh-cCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccc
Q 019584          154 YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG  232 (338)
Q Consensus       154 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  232 (338)
                      .+++..+..+..+++|++|++++|.+++        ..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSS  200 (317)
T ss_dssp             CCCSGGGBCTGGGSSEEEEECTTSCCCE--------EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCS
T ss_pred             CCCCccchhhhccCCCCEEECCCCCCCc--------ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCC
Confidence            6654444456666677777777776542        223333 4678888888888888753 32 33578888888888


Q ss_pred             ccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584          233 CRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       233 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      |++++ +|..+..+++|+.|++++|.++. +|..+..
T Consensus       201 N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~  235 (317)
T 3o53_A          201 NKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF  235 (317)
T ss_dssp             SCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             CcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhc
Confidence            88884 55568888889999999998884 5654433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=8.8e-17  Score=142.96  Aligned_cols=147  Identities=18%  Similarity=0.253  Sum_probs=126.8

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|+++.. +   .+..+++|+.|++++|.++.  ++. +.++++|++|++++|++++ +|.. .. ++|++
T Consensus        41 ~~L~~L~l~~n~i~~l-~---~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~  110 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSL-A---GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSR  110 (263)
T ss_dssp             TTCSEEECTTSCCCCC-T---TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCE
T ss_pred             CcCcEEECcCCCcccc-h---HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccE
Confidence            5899999999998743 2   68889999999999999985  555 9999999999999999994 5543 33 99999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|++++         + ..+..+++|++|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.
T Consensus       111 L~L~~N~l~~---------~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~  176 (263)
T 1xeu_A          111 LFLDNNELRD---------T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW  176 (263)
T ss_dssp             EECCSSCCSB---------S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred             EEccCCccCC---------C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence            9999999752         3 3588999999999999999874 4 689999999999999999965  67889999999


Q ss_pred             eeccCCCCCCc
Q 019584          252 LGLCGGPLSKK  262 (338)
Q Consensus       252 L~l~~N~l~~~  262 (338)
                      |++++|++++.
T Consensus       177 L~l~~N~~~~~  187 (263)
T 1xeu_A          177 IDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEECC
T ss_pred             EeCCCCcccCC
Confidence            99999999876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=1.8e-17  Score=160.14  Aligned_cols=170  Identities=15%  Similarity=0.108  Sum_probs=144.0

Q ss_pred             cccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCccc
Q 019584           80 CSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQ  158 (338)
Q Consensus        80 c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~  158 (338)
                      |.+.++.|.. .++++.|++++|.+++..+.  .+..+++|+.|++++|.+++. .|..+. .+++|++|+|++|.+++.
T Consensus       109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          109 NNISRVSCSR-GQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SCCCCEEECC-CSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CcCCCCCccc-cCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccc
Confidence            4455566643 46899999999999988777  889999999999999999875 677775 799999999999999955


Q ss_pred             cchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc-c
Q 019584          159 IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ-G  237 (338)
Q Consensus       159 ~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~  237 (338)
                       |. ...+++|++|+|++|.++         .+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~l~---------~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          185 -KG-QVVFAKLKTLDLSSNKLA---------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             -EC-CCCCTTCCEEECCSSCCC---------EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             -cc-cccCCCCCEEECCCCCCC---------CCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence             33 446899999999999975         355568899999999999999996 7888999999999999999998 6


Q ss_pred             cCchhccCCCCCCeeecc-------CCCCCCcCCC
Q 019584          238 EFPQEIFQLPNLQFLGLC-------GGPLSKKCNN  265 (338)
Q Consensus       238 ~~p~~l~~l~~L~~L~l~-------~N~l~~~~p~  265 (338)
                      .+|..+..++.|+.+++.       .|+..|.+|.
T Consensus       253 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             chHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            788888899999999987       7777777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=5.4e-17  Score=159.16  Aligned_cols=144  Identities=20%  Similarity=0.249  Sum_probs=97.4

Q ss_pred             cccee-EEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcccc
Q 019584           81 SWDGV-KCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQI  159 (338)
Q Consensus        81 ~w~gv-~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  159 (338)
                      .|.++ .|..  .+++.|++++|++++ +|.  .+  +++|++|+|++|.++.  +|   ..+++|++|++++|.+++ +
T Consensus        49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-i  115 (571)
T 3cvr_A           49 AVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-L  115 (571)
T ss_dssp             HHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-C
T ss_pred             hhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-c
Confidence            68888 6754  378999999999986 554  44  3788889999888873  66   457888888888888885 7


Q ss_pred             chhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccC
Q 019584          160 PAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEF  239 (338)
Q Consensus       160 p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  239 (338)
                      |. +..  +|++|++++|++++         +|.   .+++|++|++++|.+++ +|.   .+++|++|+|++|++++ +
T Consensus       116 p~-l~~--~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          116 PE-LPA--SLKHLDVDNNQLTM---------LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             CC-CCT--TCCEEECCSSCCSC---------CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             ch-hhc--CCCEEECCCCcCCC---------CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence            76 544  78888888887642         333   45666666666666664 443   34556666666666653 4


Q ss_pred             chhccCCCCCCeeeccCCCCC
Q 019584          240 PQEIFQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       240 p~~l~~l~~L~~L~l~~N~l~  260 (338)
                      |. +.  ++|+.|++++|.++
T Consensus       176 p~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          176 PE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CC-CC--TTCCEEECCSSCCS
T ss_pred             ch-hh--CCCCEEECcCCCCC
Confidence            44 33  55556666665555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=7.2e-18  Score=154.64  Aligned_cols=163  Identities=25%  Similarity=0.323  Sum_probs=90.2

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+.+..+.   +..+++|++|++++|.++...++..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            3556666666666554333   3456666666666666543224555666666666666666666556666666666666


Q ss_pred             EEccCC-CCCcccccccCCCcchhhcCCCCCCEEEccCC-CCCCC-CchhcccCC-CCCeeecccc--cCc-ccCchhcc
Q 019584          172 LDLSYS-NFDTFYLKLQKPGLANLAENLTNLKALDLINV-HISST-VPHTLANLS-SLRFSSLSGC--RLQ-GEFPQEIF  244 (338)
Q Consensus       172 L~Ls~N-~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~l~  244 (338)
                      |++++| .+++       ..++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+.
T Consensus       147 L~L~~~~~l~~-------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~  219 (336)
T 2ast_B          147 LNLSGCSGFSE-------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  219 (336)
T ss_dssp             EECTTCBSCCH-------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             EECCCCCCCCH-------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence            666666 4331       123444555555666666655 55432 344455555 5555555555  333 23444444


Q ss_pred             CCCCCCeeeccCCC-CCCcCC
Q 019584          245 QLPNLQFLGLCGGP-LSKKCN  264 (338)
Q Consensus       245 ~l~~L~~L~l~~N~-l~~~~p  264 (338)
                      .+++|++|++++|. +++..+
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~  240 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCF  240 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGG
T ss_pred             hCCCCCEEeCCCCCcCCHHHH
Confidence            55555555555555 444333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.69  E-value=2.5e-16  Score=145.11  Aligned_cols=153  Identities=25%  Similarity=0.286  Sum_probs=128.9

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .++++.|++++|.+.+..    .+..+++|+.|++++|.++.  .+. +..+++|++|++++|.+++ ++. +..+++|+
T Consensus       176 l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~  246 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDIS----PLASLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLT  246 (347)
T ss_dssp             CTTCSEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred             CCCCCEEEccCCcccccc----cccCCCccceeecccCCCCC--Cch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCC
Confidence            468999999999987543    47789999999999999875  333 8889999999999999984 444 88899999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|.+++         + +.+..+++|++|++++|.+++.  +.+..+++|++|++++|.+++..|..+..+++|+
T Consensus       247 ~L~l~~n~l~~---------~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          247 WLEIGTNQISD---------I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             EEECCSSCCCC---------C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             EEECCCCccCC---------C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            99999998642         2 3577889999999999999864  4578899999999999999988888899999999


Q ss_pred             eeeccCCCCCCcCC
Q 019584          251 FLGLCGGPLSKKCN  264 (338)
Q Consensus       251 ~L~l~~N~l~~~~p  264 (338)
                      +|++++|++++..|
T Consensus       315 ~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          315 TLFLSQNHITDIRP  328 (347)
T ss_dssp             EEECCSSSCCCCGG
T ss_pred             EEEccCCccccccC
Confidence            99999999988766

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=9.5e-18  Score=169.55  Aligned_cols=147  Identities=25%  Similarity=0.294  Sum_probs=119.1

Q ss_pred             CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584           90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL  169 (338)
Q Consensus        90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (338)
                      ...+++.|+|++|.+. .++.  .+..+++|++|+|++|.++ . +|..+.++++|++|+|++|.|+ .+|..++.+++|
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l~~--~~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NISA--NIFKYDFLTRLYLNGNSLT-E-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CCCG--GGGGCCSCSCCBCTTSCCS-C-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             cCCCCcEEECCCCCCC-CCCh--hhcCCCCCCEEEeeCCcCc-c-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            3467899999999998 5665  6779999999999999998 3 8999999999999999999999 889999999999


Q ss_pred             CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCC-CCeeecccccCcccCchhccCCCC
Q 019584          170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSS-LRFSSLSGCRLQGEFPQEIFQLPN  248 (338)
Q Consensus       170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~  248 (338)
                      ++|+|++|.++         .+|..+..+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..+     
T Consensus       296 ~~L~L~~N~l~---------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l-----  361 (727)
T 4b8c_D          296 KYFYFFDNMVT---------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER-----  361 (727)
T ss_dssp             SEEECCSSCCC---------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------
T ss_pred             CEEECCCCCCC---------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc-----
Confidence            99999999863         57777999999999999999999988888765432 2357899999998888644     


Q ss_pred             CCeeeccCC
Q 019584          249 LQFLGLCGG  257 (338)
Q Consensus       249 L~~L~l~~N  257 (338)
                       +.|+++.|
T Consensus       362 -~~l~l~~n  369 (727)
T 4b8c_D          362 -RFIEINTD  369 (727)
T ss_dssp             ---------
T ss_pred             -ceeEeecc
Confidence             45566665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.68  E-value=4.3e-16  Score=143.44  Aligned_cols=153  Identities=18%  Similarity=0.230  Sum_probs=116.6

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..+++.|++++|.+.+..    .+..+++|+.|++++|.+..  ++. +..+++|++|++++|.+++..+  +..+++|+
T Consensus       154 l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~  224 (347)
T 4fmz_A          154 MTGLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLN  224 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGGGCTTCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred             CCCCcEEEecCCCcCCch----hhccCCCCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence            457888888888876543    36778888888888888864  443 7788888888888888884433  77888888


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|.+++         ++. +..+++|++|++++|.+++.  +.+..+++|++|++++|.+++ + ..+..+++|+
T Consensus       225 ~L~l~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~  290 (347)
T 4fmz_A          225 SLKIGNNKITD---------LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLN  290 (347)
T ss_dssp             EEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred             EEEccCCccCC---------Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCC
Confidence            88888888642         233 77888888888888888763  457788888888888888884 3 3577788888


Q ss_pred             eeeccCCCCCCcCCCC
Q 019584          251 FLGLCGGPLSKKCNNS  266 (338)
Q Consensus       251 ~L~l~~N~l~~~~p~~  266 (338)
                      .|++++|.+++..|..
T Consensus       291 ~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             EEECCSSCCCGGGHHH
T ss_pred             EEECcCCcCCCcChhH
Confidence            8888888888766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=4.4e-17  Score=131.95  Aligned_cols=129  Identities=24%  Similarity=0.288  Sum_probs=112.9

Q ss_pred             CcEEEEEeCCCCce-eecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           92 GHVVELDLASSCLY-GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ++++.|++++|.++ +.++.  .+..+++|++|++++|.++.  + ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             ccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            57999999999998 67777  78999999999999999975  3 6788999999999999999977888888899999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc---hhcccCCCCCeeeccc
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP---HTLANLSSLRFSSLSG  232 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~  232 (338)
                      +|++++|.+++.       ..+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        92 ~L~ls~N~i~~~-------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           92 HLNLSGNKIKDL-------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTSCCCSH-------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEECCCCcCCCh-------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999997531       234778999999999999999997655   5789999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=3.6e-16  Score=154.60  Aligned_cols=149  Identities=28%  Similarity=0.331  Sum_probs=130.0

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .++++.|+|++|.+.+..    .+..+++|+.|+|++|.++.  +| .+..+++|++|+|++|.+++ + +.+..+++|+
T Consensus        64 l~~L~~L~Ls~N~l~~~~----~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~  134 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIK----PLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE  134 (605)
T ss_dssp             CTTCCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCS
T ss_pred             CCCCCEEEeeCCCCCCCh----hhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccC
Confidence            468999999999998654    37899999999999999974  44 68999999999999999995 4 4688999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      .|+|++|.+++         + ..+..+++|++|+|++|.+.+..|  +..+++|+.|+|++|.+++ +| .+..+++|+
T Consensus       135 ~L~Ls~N~l~~---------l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~  200 (605)
T 1m9s_A          135 SLYLGNNKITD---------I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD  200 (605)
T ss_dssp             EEECCSSCCCC---------C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred             EEECCCCccCC---------c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence            99999999652         2 568899999999999999998666  8999999999999999995 44 688999999


Q ss_pred             eeeccCCCCCCc
Q 019584          251 FLGLCGGPLSKK  262 (338)
Q Consensus       251 ~L~l~~N~l~~~  262 (338)
                      .|+|++|++++.
T Consensus       201 ~L~L~~N~l~~~  212 (605)
T 1m9s_A          201 VLELFSQECLNK  212 (605)
T ss_dssp             EEECCSEEEECC
T ss_pred             EEEccCCcCcCC
Confidence            999999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=7.9e-18  Score=154.37  Aligned_cols=157  Identities=28%  Similarity=0.303  Sum_probs=118.2

Q ss_pred             CcEEEEEeCCCCceee-cCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccc-cCccc-cchhhcCCCC
Q 019584           92 GHVVELDLASSCLYGS-INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS-YFSGQ-IPAELLELSN  168 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~  168 (338)
                      .++++|++++|.+.+. ++.  .+..+++|++|++++|.+++. .+..+..+++|++|++++| .+++. ++..+..+++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCEEEccCCCcCHHHHHH--HHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            5788899988887755 555  677788888888888887654 6777888888888888888 67653 6666778888


Q ss_pred             CCEEEccCC-CCCcccccccCCCcchhhcCCC-CCCEEEccCC--CCC-CCCchhcccCCCCCeeeccccc-CcccCchh
Q 019584          169 LEVLDLSYS-NFDTFYLKLQKPGLANLAENLT-NLKALDLINV--HIS-STVPHTLANLSSLRFSSLSGCR-LQGEFPQE  242 (338)
Q Consensus       169 L~~L~Ls~N-~l~~~~l~~~~~~~~~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~  242 (338)
                      |++|++++| .+++       ..++..+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..
T Consensus       170 L~~L~l~~~~~l~~-------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          170 LDELNLSWCFDFTE-------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             CCEEECCCCTTCCH-------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             CCEEcCCCCCCcCh-------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            888888888 7542       12556677777 8888888887  454 3456666777888888888887 66666777


Q ss_pred             ccCCCCCCeeeccCCC
Q 019584          243 IFQLPNLQFLGLCGGP  258 (338)
Q Consensus       243 l~~l~~L~~L~l~~N~  258 (338)
                      +..+++|++|++++|.
T Consensus       243 l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             GGGCTTCCEEECTTCT
T ss_pred             HhCCCCCCEeeCCCCC
Confidence            7777888888888775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.5e-16  Score=135.14  Aligned_cols=134  Identities=18%  Similarity=0.177  Sum_probs=117.9

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      ....+++|+.|++++|.++.  +| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|+++        ...+
T Consensus        39 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~--------~~~~  105 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVT--------SDKI  105 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCB--------GGGS
T ss_pred             ChhhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccC--------cccC
Confidence            34678899999999999973  66 6899999999999999776 33 47889999999999999965        3456


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc-CcccCchhccCCCCCCeeeccCCCCCC
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR-LQGEFPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      ..+..+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++
T Consensus       106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence            778899999999999999998889999999999999999998 65 666 68899999999999999986

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=4.5e-16  Score=153.97  Aligned_cols=149  Identities=23%  Similarity=0.259  Sum_probs=130.1

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..+++.|++++|.+...  +  .+..+++|+.|+|++|.++.  ++. +..+++|++|+|++|.+++ +| .+..+++|+
T Consensus        42 L~~L~~L~l~~n~i~~l--~--~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSV--Q--GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             HTTCCCCBCTTCCCCCC--T--TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             CCCCCEEECcCCCCCCC--h--HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            35789999999998753  2  68899999999999999985  444 8999999999999999984 44 789999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|+|++|.+++         + ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+
T Consensus       113 ~L~Ls~N~l~~---------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~  178 (605)
T 1m9s_A          113 SLSLEHNGISD---------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  178 (605)
T ss_dssp             EEECTTSCCCC---------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             EEEecCCCCCC---------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence            99999999652         2 3578899999999999999975  678999999999999999997655  88999999


Q ss_pred             eeeccCCCCCCc
Q 019584          251 FLGLCGGPLSKK  262 (338)
Q Consensus       251 ~L~l~~N~l~~~  262 (338)
                      .|+|++|.+++.
T Consensus       179 ~L~Ls~N~i~~l  190 (605)
T 1m9s_A          179 NLYLSKNHISDL  190 (605)
T ss_dssp             EEECCSSCCCBC
T ss_pred             EEECcCCCCCCC
Confidence            999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.66  E-value=1.1e-15  Score=146.64  Aligned_cols=150  Identities=24%  Similarity=0.327  Sum_probs=76.0

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      ++++.|++++|.+.+.  +  .+..+++|+.|++++|.+++.  +. +..+++|++|++++|.+++ ++. +..+++|++
T Consensus       221 ~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~  291 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDI--G--TLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTN  291 (466)
T ss_dssp             TTCCEEECCSSCCCCC--G--GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSE
T ss_pred             CCCCEEECCCCCcccc--h--hhhcCCCCCEEECCCCccccc--hh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCe
Confidence            3455555555554432  1  345555666666666655432  22 5555666666666666553 222 555566666


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|++++         ++. +..+++|++|++++|.+++..|  +..+++|+.|++++|.+++.  ..+..+++|+.
T Consensus       292 L~L~~n~l~~---------~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  357 (466)
T 1o6v_A          292 LELNENQLED---------ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW  357 (466)
T ss_dssp             EECCSSCCSC---------CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             EEcCCCcccC---------chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCE
Confidence            6666665432         111 4455555555555555554333  44555555555555555532  23445555555


Q ss_pred             eeccCCCCCCcCC
Q 019584          252 LGLCGGPLSKKCN  264 (338)
Q Consensus       252 L~l~~N~l~~~~p  264 (338)
                      |++++|++++..|
T Consensus       358 L~l~~n~l~~~~~  370 (466)
T 1o6v_A          358 LSAGHNQISDLTP  370 (466)
T ss_dssp             EECCSSCCCBCGG
T ss_pred             EeCCCCccCccch
Confidence            5555555554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.66  E-value=1.4e-17  Score=156.07  Aligned_cols=169  Identities=20%  Similarity=0.211  Sum_probs=107.0

Q ss_pred             CcEEEEEeCCCCceeecCC--CCccccC---------cCccEEEccCCCCCCCCCc---hhhhcCCCCcEEEcccccCcc
Q 019584           92 GHVVELDLASSCLYGSINS--TSSLFQL---------VHLQRLSLFDNNFNFSEIP---SAILNFSRLTHLNLSQSYFSG  157 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~--~~~l~~l---------~~L~~L~L~~n~l~~~~~p---~~l~~l~~L~~L~Ls~n~l~~  157 (338)
                      ++++.|+|++|.+++..+.  ...+..+         ++|++|++++|.++...++   ..+..+++|++|++++|.++.
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  201 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  201 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence            4566666666666432221  0012222         6677777777766532244   355566777777777777662


Q ss_pred             -----ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----Cchhccc--CCCCC
Q 019584          158 -----QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLAN--LSSLR  226 (338)
Q Consensus       158 -----~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~  226 (338)
                           ..|..+..+++|++|+|++|.++....    ..+|..+..+++|++|++++|.+++.    ++..+..  +++|+
T Consensus       202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~  277 (386)
T 2ca6_A          202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  277 (386)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             hHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence                 233356667777777777777532100    13566677788888888888888764    4555533  78888


Q ss_pred             eeecccccCcc----cCchhc-cCCCCCCeeeccCCCCCCcCC
Q 019584          227 FSSLSGCRLQG----EFPQEI-FQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       227 ~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      +|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            88888888886    377766 557888888888888887664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=9.2e-16  Score=147.27  Aligned_cols=148  Identities=26%  Similarity=0.360  Sum_probs=129.4

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .++++.|++++|.+.+..    .+..+++|+.|++++|.+++  ++. +..+++|++|++++|.+++..+  +..+++|+
T Consensus       242 l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISN--ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             CTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             CCCCCEEECCCCccccch----hhhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence            468999999999998654    47889999999999999985  444 8899999999999999996433  88999999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      +|++++|++++        ..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+
T Consensus       313 ~L~L~~n~l~~--------~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          313 YLTLYFNNISD--------ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             EEECCSSCCSC--------CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred             EEECcCCcCCC--------chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence            99999999752        333  67899999999999999975  578999999999999999998776  88999999


Q ss_pred             eeeccCCCCCC
Q 019584          251 FLGLCGGPLSK  261 (338)
Q Consensus       251 ~L~l~~N~l~~  261 (338)
                      .|++++|++++
T Consensus       379 ~L~l~~n~~~~  389 (466)
T 1o6v_A          379 QLGLNDQAWTN  389 (466)
T ss_dssp             EEECCCEEEEC
T ss_pred             EEeccCCcccC
Confidence            99999999988

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=7.7e-16  Score=136.83  Aligned_cols=146  Identities=22%  Similarity=0.322  Sum_probs=123.4

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      +++.++++++.+++..    .+..+++|+.|++++|.++.  ++ .+..+++|++|++++|.+++ ++. +..+++|++|
T Consensus        20 ~l~~l~l~~~~i~~~~----~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L   90 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV----SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHTCSCTTSEE----CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEE
T ss_pred             HHHHHHhcCCCccccc----chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEE
Confidence            4566778888887543    47789999999999999974  55 68999999999999999995 554 9999999999


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL  252 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  252 (338)
                      ++++|++++         ++... . ++|++|++++|.+++ + +.+..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        91 ~L~~N~l~~---------l~~~~-~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L  155 (263)
T 1xeu_A           91 SVNRNRLKN---------LNGIP-S-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVL  155 (263)
T ss_dssp             ECCSSCCSC---------CTTCC-C-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEE
T ss_pred             ECCCCccCC---------cCccc-c-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEE
Confidence            999999753         33322 2 899999999999987 3 458999999999999999995 44 68899999999


Q ss_pred             eccCCCCCCc
Q 019584          253 GLCGGPLSKK  262 (338)
Q Consensus       253 ~l~~N~l~~~  262 (338)
                      ++++|.+++.
T Consensus       156 ~L~~N~i~~~  165 (263)
T 1xeu_A          156 DLHGNEITNT  165 (263)
T ss_dssp             ECTTSCCCBC
T ss_pred             ECCCCcCcch
Confidence            9999999986

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.9e-15  Score=128.06  Aligned_cols=131  Identities=26%  Similarity=0.348  Sum_probs=115.6

Q ss_pred             cEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCC
Q 019584          121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTN  200 (338)
Q Consensus       121 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~  200 (338)
                      +.+++++|.++.  +|..+  .++|++|++++|.++ .+|..+..+++|++|++++|.++        ...+..+.++++
T Consensus        13 ~~l~~~~~~l~~--ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~--------~i~~~~f~~l~~   79 (193)
T 2wfh_A           13 TVVRCSNKGLKV--LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS--------TLSNQSFSNMTQ   79 (193)
T ss_dssp             TEEECTTSCCSS--CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC--------CCCTTTTTTCTT
T ss_pred             CEEEcCCCCCCc--CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC--------EeCHhHccCCCC
Confidence            578999999873  67654  368999999999999 88899999999999999999975        345567899999


Q ss_pred             CCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       201 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      |++|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+++|+.|++++|++.|.|+
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            9999999999998888889999999999999999996555578899999999999999999886

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.64  E-value=5.3e-16  Score=152.10  Aligned_cols=143  Identities=22%  Similarity=0.288  Sum_probs=103.3

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+++ +|.   +.+  +|++|++++|.+++  +|.   .+++|++|+|++|.+++ +|.   .+++|++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~---l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~  164 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE---LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV  164 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             CCCCEEEccCCCCCC-cch---hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence            466667777776665 332   222  67777777777764  454   56777777777777774 555   4677788


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCC-------CeeecccccCcccCchhcc
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL-------RFSSLSGCRLQGEFPQEIF  244 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~  244 (338)
                      |++++|+++         .+|. +.  ++|++|++++|.++ .+|. +..  +|       +.|+|++|+|+ .+|..+.
T Consensus       165 L~Ls~N~L~---------~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~  227 (571)
T 3cvr_A          165 LSVRNNQLT---------FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL  227 (571)
T ss_dssp             EECCSSCCS---------CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG
T ss_pred             EECCCCCCC---------Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh
Confidence            888887754         2454 44  88999999999988 4666 554  67       99999999999 6888888


Q ss_pred             CCCCCCeeeccCCCCCCcCCCC
Q 019584          245 QLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       245 ~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                      .+++|+.|++++|++++.+|..
T Consensus       228 ~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          228 SLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             GSCTTEEEECCSSSCCHHHHHH
T ss_pred             cCCCCCEEEeeCCcCCCcCHHH
Confidence            8999999999999999987754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.64  E-value=2.6e-17  Score=154.14  Aligned_cols=68  Identities=24%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             hhcCCCCCCEEEccCCCCC----CCCchhcccCCCCCeeecccccCccc----CchhccC--CCCCCeeeccCCCCCC
Q 019584          194 LAENLTNLKALDLINVHIS----STVPHTLANLSSLRFSSLSGCRLQGE----FPQEIFQ--LPNLQFLGLCGGPLSK  261 (338)
Q Consensus       194 ~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~l~~N~l~~  261 (338)
                      .+..+++|++|++++|.++    ..+|..+..+++|++|+|++|.+++.    ++..+..  +++|+.|++++|.+++
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            3444455555555555543    23444444455555555555554433    2333322  4455555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=2.7e-15  Score=124.98  Aligned_cols=114  Identities=22%  Similarity=0.203  Sum_probs=96.9

Q ss_pred             CCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccC
Q 019584          143 SRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANL  222 (338)
Q Consensus       143 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  222 (338)
                      ++|++|++++|.+++..+..+..+++|++|++++|+++        ...+..+..+++|++|++++|.+++..+..+..+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l   99 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--------SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL   99 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce--------EeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence            68999999999999655566788999999999999965        3344567889999999999999998777778889


Q ss_pred             CCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          223 SSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       223 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      ++|++|++++|++++..+..+..+++|++|++++|++.|.||
T Consensus       100 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          100 TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999999999999996555556789999999999999999887

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=7.1e-16  Score=142.66  Aligned_cols=181  Identities=18%  Similarity=0.156  Sum_probs=135.7

Q ss_pred             CcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCc-hhhhcCCCCcE-
Q 019584           79 CCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIP-SAILNFSRLTH-  147 (338)
Q Consensus        79 ~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~-  147 (338)
                      .|.+..|.|.+.         ..++++|+|++|+|+...+.  .|.++++|++|+|++|.+... +| ..|.+++++++ 
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEI   84 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEE
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhh
Confidence            378999999632         35789999999999966555  789999999999999998654 44 46788888775 


Q ss_pred             EEcccccCccccchhhcCCCCCCEEEccCCCCCcccc------------cccC----CCcc-hhhcCC-CCCCEEEccCC
Q 019584          148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYL------------KLQK----PGLA-NLAENL-TNLKALDLINV  209 (338)
Q Consensus       148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l------------~~~~----~~~~-~~~~~l-~~L~~L~Ls~N  209 (338)
                      +.+++|+++...|..|..+++|++|++++|+++...-            ....    ..++ ..+..+ ..+++|++++|
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            5667799996667788999999999999999865310            0000    1111 223333 46888999999


Q ss_pred             CCCCCCchhcccCCCCCeeeccc-ccCcccCch-hccCCCCCCeeeccCCCCCCcCC
Q 019584          210 HISSTVPHTLANLSSLRFSSLSG-CRLQGEFPQ-EIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       210 ~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~-~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      +++. +|.......+|+.|++++ |.++ .+|. .+..+++|++|++++|.++.-.+
T Consensus       165 ~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          165 GIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             CCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             cccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccCh
Confidence            9985 566555667899999985 5666 6664 67889999999999999986433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=1e-15  Score=127.57  Aligned_cols=132  Identities=17%  Similarity=0.222  Sum_probs=92.1

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcC-CCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNF-SRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGL  191 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~  191 (338)
                      .+.++.+|+.|++++|.++.  +|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.++         .+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~---------~~   79 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC---------RI   79 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC---------EE
T ss_pred             hcCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc---------cc
Confidence            45566777777777777763  444 3333 3788888888877743  56777778888888888754         23


Q ss_pred             c-hhhcCCCCCCEEEccCCCCCCCCch--hcccCCCCCeeecccccCcccCchh----ccCCCCCCeeeccCCCCC
Q 019584          192 A-NLAENLTNLKALDLINVHISSTVPH--TLANLSSLRFSSLSGCRLQGEFPQE----IFQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       192 ~-~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~l~~N~l~  260 (338)
                      | ..+..+++|++|++++|.++. +|.  .+..+++|++|++++|.++ .+|..    +..+++|+.||+++|...
T Consensus        80 ~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           80 GEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            3 344677888888888888753 554  6777788888888888887 45553    677788888888777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.63  E-value=7.4e-17  Score=149.94  Aligned_cols=165  Identities=19%  Similarity=0.212  Sum_probs=113.6

Q ss_pred             cEEEEEeCCCCceeecCCCCccccC-----cCccEEEccCCCCCCCCCchh----hhcC-CCCcEEEcccccCccccchh
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQL-----VHLQRLSLFDNNFNFSEIPSA----ILNF-SRLTHLNLSQSYFSGQIPAE  162 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~p~~----l~~l-~~L~~L~Ls~n~l~~~~p~~  162 (338)
                      ++++|+|++|.+++..+.  .+..+     ++|++|++++|.++.. .+..    +..+ ++|++|++++|.+++..+..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSD--ELVQILAAIPANVTSLNLSGNFLSYK-SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             TCCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             ceeEEECcCCCCCHHHHH--HHHHHHhccCCCccEEECcCCcCChH-HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            688888888887765444  45443     7788888888887654 4443    3344 78888888888887555444


Q ss_pred             h----cC-CCCCCEEEccCCCCCcccccccCCCcchhhcCCC-CCCEEEccCCCCCCCCchhcc----cC-CCCCeeecc
Q 019584          163 L----LE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLT-NLKALDLINVHISSTVPHTLA----NL-SSLRFSSLS  231 (338)
Q Consensus       163 l----~~-l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~----~l-~~L~~L~Ls  231 (338)
                      +    .. .++|++|++++|.+++....    .++..+..++ +|++|++++|.+++..+..+.    .+ ++|++|+|+
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLGIKSSD----ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGGGSCHH----HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHhCCCceeEEEccCCcCCHHHHH----HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            3    23 25888888888886532111    3445556665 899999999998876665444    44 589999999


Q ss_pred             cccCccc----CchhccC-CCCCCeeeccCCCCCCcCC
Q 019584          232 GCRLQGE----FPQEIFQ-LPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       232 ~N~l~~~----~p~~l~~-l~~L~~L~l~~N~l~~~~p  264 (338)
                      +|.+++.    ++..+.. .++|++|++++|.+++..+
T Consensus       205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            9998863    4555555 3589999999999887543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=1.6e-17  Score=163.23  Aligned_cols=156  Identities=22%  Similarity=0.208  Sum_probs=127.1

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC-------------CCCCCCchhhhc-----------------
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN-------------FNFSEIPSAILN-----------------  141 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~p~~l~~-----------------  141 (338)
                      .+++.|+|++|.++ .+|.  .++++++|+.|++++|.             +.+. .|..+..                 
T Consensus       349 ~~L~~L~Ls~n~L~-~Lp~--~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          349 EQLFRCELSVEKST-VLQS--ELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             TTSSSCCCCHHHHH-HHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccceeccCChhhHH-hhHH--HHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccch
Confidence            45667888888886 5666  78888888888887664             2221 2322111                 


Q ss_pred             ---------------CCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEc
Q 019584          142 ---------------FSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL  206 (338)
Q Consensus       142 ---------------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~L  206 (338)
                                     ...|++|+|++|.+++ +|. ++.+++|++|+|++|.++         .+|..+..+++|++|++
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~---------~lp~~~~~l~~L~~L~L  493 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR---------ALPPALAALRCLEVLQA  493 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC---------CCCGGGGGCTTCCEEEC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc---------ccchhhhcCCCCCEEEC
Confidence                           1258899999999994 776 999999999999999964         57888999999999999


Q ss_pred             cCCCCCCCCchhcccCCCCCeeecccccCcccC-chhccCCCCCCeeeccCCCCCCcCC
Q 019584          207 INVHISSTVPHTLANLSSLRFSSLSGCRLQGEF-PQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       207 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      ++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|
T Consensus       494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            9999997 67 8999999999999999999776 9999999999999999999998765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.63  E-value=1.1e-16  Score=148.89  Aligned_cols=163  Identities=20%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             CcEEEEEeCCCCceeecCCCCccc----cC-cCccEEEccCCCCCCCCCchhhh----c-CCCCcEEEcccccCccc---
Q 019584           92 GHVVELDLASSCLYGSINSTSSLF----QL-VHLQRLSLFDNNFNFSEIPSAIL----N-FSRLTHLNLSQSYFSGQ---  158 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~p~~l~----~-l~~L~~L~Ls~n~l~~~---  158 (338)
                      .++++|+|++|.+++..+.  .+.    .+ ++|++|++++|.++.. .+..+.    . .++|++|+|++|.+++.   
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSD--ELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             CCccEEECcCCcCChHHHH--HHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence            4677777777776644332  222    23 6677777777776543 333332    2 24677777777776643   


Q ss_pred             -cchhhcCCC-CCCEEEccCCCCCcccccccCCCcchhhcCC-CCCCEEEccCCCCCCC----CchhcccC-CCCCeeec
Q 019584          159 -IPAELLELS-NLEVLDLSYSNFDTFYLKLQKPGLANLAENL-TNLKALDLINVHISST----VPHTLANL-SSLRFSSL  230 (338)
Q Consensus       159 -~p~~l~~l~-~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~L  230 (338)
                       ++..+..++ +|++|++++|++++...    ..+...+... ++|++|++++|.+++.    ++..+... ++|++|+|
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence             233334444 67777777776542110    0122334444 3777777777776653    33444442 46777777


Q ss_pred             ccccCcccCch----hccCCCCCCeeeccCCCCCC
Q 019584          231 SGCRLQGEFPQ----EIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       231 s~N~l~~~~p~----~l~~l~~L~~L~l~~N~l~~  261 (338)
                      ++|.+++..+.    .+..+++|+.|++++|.+..
T Consensus       233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~  267 (362)
T 3goz_A          233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN  267 (362)
T ss_dssp             CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence            77777654332    23455667777777776443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.62  E-value=3.8e-15  Score=142.75  Aligned_cols=143  Identities=16%  Similarity=0.113  Sum_probs=83.4

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      +++++|++++|.+++.     .+..+++|++|++++|.+++  ++  +.++++|++|++++|.+++ +|  +..+++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~  131 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY  131 (457)
T ss_dssp             TTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred             CCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence            3455555555555442     14455555555555555543  22  4555555555555555553 33  455555555


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|++++         ++  +..+++|++|++++|...+.+  .++.+++|++|++++|++++ +|  +..+++|+.
T Consensus       132 L~l~~N~l~~---------l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~  195 (457)
T 3bz5_A          132 LNCARNTLTE---------ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNR  195 (457)
T ss_dssp             EECTTSCCSC---------CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCE
T ss_pred             EECCCCccce---------ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCE
Confidence            5555555431         11  455666666666666544444  35667777777777777774 44  667778888


Q ss_pred             eeccCCCCCCc
Q 019584          252 LGLCGGPLSKK  262 (338)
Q Consensus       252 L~l~~N~l~~~  262 (338)
                      |++++|.+++.
T Consensus       196 L~l~~N~l~~~  206 (457)
T 3bz5_A          196 LNCDTNNITKL  206 (457)
T ss_dssp             EECCSSCCSCC
T ss_pred             EECcCCcCCee
Confidence            88888877764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.61  E-value=9.5e-15  Score=139.99  Aligned_cols=144  Identities=19%  Similarity=0.193  Sum_probs=93.3

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..++++|++++|.+++.     .+.++++|++|++++|.+++  +|  +..+++|++|++++|.+++ ++  ++.+++|+
T Consensus        84 l~~L~~L~Ls~N~l~~~-----~~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~  151 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTNL-----DVTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLT  151 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-----CCTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCC
T ss_pred             CCCCCEEECcCCCCcee-----ecCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccce-ec--cccCCcCC
Confidence            45788888888887753     26677778888888887764  33  6677777777777777764 32  44455555


Q ss_pred             EEEccCC----------------------CCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCee
Q 019584          171 VLDLSYS----------------------NFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS  228 (338)
Q Consensus       171 ~L~Ls~N----------------------~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  228 (338)
                      +|++++|                      +++         .+|  +..+++|++|++++|.+++.   .++.+++|++|
T Consensus       152 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~---------~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L  217 (457)
T 3bz5_A          152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT---------ELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFL  217 (457)
T ss_dssp             EEECTTCSCCCCCCCTTCTTCCEEECCSSCCC---------CCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEE
T ss_pred             EEECCCCCcccccccccCCcCCEEECCCCccc---------eec--cccCCCCCEEECcCCcCCee---ccccCCCCCEE
Confidence            5555555                      432         122  45566666666666666653   25666777777


Q ss_pred             ecccccCcccCchhccCCCCCCeeeccCCCCCCcC
Q 019584          229 SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKC  263 (338)
Q Consensus       229 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  263 (338)
                      ++++|++++ +|  +..+++|+.|++++|.+++..
T Consensus       218 ~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          218 DCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence            777777775 45  666777777777777777643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=3e-15  Score=124.18  Aligned_cols=106  Identities=21%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             ccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCC
Q 019584          120 LQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLT  199 (338)
Q Consensus       120 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~  199 (338)
                      .+.+++++|.++.  +|..+  .++|++|+|++|.+++..|..|..+++|++|+|++|+++        ...+..+..++
T Consensus        11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--------~l~~~~f~~l~   78 (170)
T 3g39_A           11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--------VLPAGVFDKLT   78 (170)
T ss_dssp             TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------CCCTTTTTTCT
T ss_pred             CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC--------ccChhhccCCC
Confidence            4567777777753  55444  366777777777777555666677777777777777654        22334456666


Q ss_pred             CCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc
Q 019584          200 NLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       200 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  237 (338)
                      +|++|++++|++++..+..+..+++|++|+|++|.++.
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            66666666666665544556666666666666666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=1e-17  Score=142.42  Aligned_cols=152  Identities=28%  Similarity=0.341  Sum_probs=117.5

Q ss_pred             cEEEEEeCCCCceeecCCCC----ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCC
Q 019584           93 HVVELDLASSCLYGSINSTS----SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSN  168 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  168 (338)
                      .++.++++++.+.+..+...    .+..+++|++|++++|.++.  +| .+.++++|++|++++|.++ .+|..+..+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            45556666666665544211    56778899999999999875  66 7888999999999999998 78887777889


Q ss_pred             CCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCcccCchh-----
Q 019584          169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQGEFPQE-----  242 (338)
Q Consensus       169 L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~-----  242 (338)
                      |++|++++|+++         .+| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|..     
T Consensus        95 L~~L~L~~N~l~---------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  164 (198)
T 1ds9_A           95 LEELWISYNQIA---------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             CSEEEEEEEECC---------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred             CCEEECcCCcCC---------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence            999999999864         344 57788899999999999986322 47888999999999999998765542     


Q ss_pred             -----ccCCCCCCeeeccCCCCC
Q 019584          243 -----IFQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       243 -----l~~l~~L~~L~l~~N~l~  260 (338)
                           +..+++|+.||  +|+++
T Consensus       165 ~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHHhCCCcEEEC--CcccC
Confidence                 67788999886  56554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=9.8e-15  Score=121.55  Aligned_cols=104  Identities=21%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             cEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCC
Q 019584          121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTN  200 (338)
Q Consensus       121 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~  200 (338)
                      +.+++++|.++.  +|..+.  ++|++|+|++|++++..|..+..+++|++|+|++|+++        ...+..+..+++
T Consensus        15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--------AIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTT
T ss_pred             cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC--------ccChhHhCCcch
Confidence            456777777642  555442  66777777777776555666666667777777776653        222233455666


Q ss_pred             CCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584          201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       201 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      |++|++++|++++..+..+..+++|++|+|++|.+.
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            666666666666544444555666666666666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=6e-15  Score=122.87  Aligned_cols=129  Identities=17%  Similarity=0.180  Sum_probs=108.2

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCc-CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLV-HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .+++.|++++|.++. ++   .+..+. +|++|++++|.++.  + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        19 ~~L~~L~l~~n~l~~-i~---~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IE---NLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TSCEEEECTTSCCCS-CC---CGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCceEEEeeCCCCch-hH---HhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            589999999999984 33   455555 99999999999974  4 5688999999999999999954334458999999


Q ss_pred             EEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCCCCCCCchh----cccCCCCCeeecccccCcc
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVHISSTVPHT----LANLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~  237 (338)
                      +|++++|+++         .+|.  .+..+++|++|++++|.++. +|..    +..+++|++||+++|....
T Consensus        92 ~L~L~~N~i~---------~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLV---------ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCC---------CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCC---------cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999974         4454  78899999999999999985 5664    8899999999999998763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1.7e-14  Score=141.63  Aligned_cols=122  Identities=24%  Similarity=0.283  Sum_probs=108.0

Q ss_pred             CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCC
Q 019584          119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL  198 (338)
Q Consensus       119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l  198 (338)
                      .|+.|++++|.+++  +|. +..+++|++|+|++|.++ .+|..++.+++|++|+|++|+++         .+| .+..+
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---------~lp-~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---------NVD-GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC---------CCG-GGTTC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC---------CCc-ccCCC
Confidence            57899999999985  676 999999999999999999 89999999999999999999965         356 78999


Q ss_pred             CCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCcccCch---hccCCCCCCeeec
Q 019584          199 TNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGEFPQ---EIFQLPNLQFLGL  254 (338)
Q Consensus       199 ~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~l  254 (338)
                      ++|++|++++|.+++.. |..++.+++|+.|+|++|.+++..|.   .+..+++|+.|++
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999999999876 99999999999999999999976543   2334889999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=3.2e-16  Score=149.75  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=42.4

Q ss_pred             cchhhcCCCCCCEEEccCCCCCCCCchhccc-----CCCCCeeecccccCcc----cCchhccCCCCCCeeeccCCCCCC
Q 019584          191 LANLAENLTNLKALDLINVHISSTVPHTLAN-----LSSLRFSSLSGCRLQG----EFPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       191 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++|++++
T Consensus       333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            3444555666666666666665443333332     4566666666666664    455566666666666666666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=7.4e-15  Score=145.56  Aligned_cols=97  Identities=19%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             CCCCCCCCCCCCCcccceeEE------cCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh
Q 019584           67 VATWKPDEKNKDCCSWDGVKC------NEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL  140 (338)
Q Consensus        67 ~~~w~~~~~~~~~c~w~gv~c------~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~  140 (338)
                      ...|.   ...++|.|++..|      .....+++.|++++|+++ .+|.  .+.  ++|+.|++++|.++.  +|.   
T Consensus        12 w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~---   78 (622)
T 3g06_A           12 WSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---   78 (622)
T ss_dssp             HHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---
T ss_pred             HHHHH---hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---
Confidence            34575   4566788865321      111124677777777776 4444  333  567777777776652  444   


Q ss_pred             cCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCC
Q 019584          141 NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFD  180 (338)
Q Consensus       141 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  180 (338)
                      .+++|++|+|++|.++ .+|.   .+++|++|++++|+++
T Consensus        79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            4566777777777666 4554   4566666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=2.6e-14  Score=141.65  Aligned_cols=105  Identities=25%  Similarity=0.284  Sum_probs=77.9

Q ss_pred             CCCcEEEcccccCccccchhhc-----------------CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEE
Q 019584          143 SRLTHLNLSQSYFSGQIPAELL-----------------ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALD  205 (338)
Q Consensus       143 ~~L~~L~Ls~n~l~~~~p~~l~-----------------~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~  205 (338)
                      ++|++|++++|.+++ +|..+.                 .+++|++|++++|+++         .+|   ..+++|++|+
T Consensus       181 ~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~---------~lp---~~l~~L~~L~  247 (622)
T 3g06_A          181 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT---------SLP---VLPSELKELM  247 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS---------CCC---CCCTTCCEEE
T ss_pred             CCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC---------cCC---CCCCcCcEEE
Confidence            667777777777763 443221                 1245666666666543         233   4568899999


Q ss_pred             ccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584          206 LINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       206 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      +++|.++. +|.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|.
T Consensus       248 Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          248 VSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            99999884 565   5688999999999999 8899999999999999999999987664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=5.2e-17  Score=138.09  Aligned_cols=139  Identities=19%  Similarity=0.225  Sum_probs=114.9

Q ss_pred             cccCcCccEEEccCCCCCCC-----CCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccC
Q 019584          114 LFQLVHLQRLSLFDNNFNFS-----EIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQK  188 (338)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~-----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~  188 (338)
                      +.....++.++++.+.+++.     .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++        
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--------   83 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--------   83 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--------
Confidence            33455666666666666554     133489999999999999999995 77 8899999999999999964        


Q ss_pred             CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCc-hhccCCCCCCeeeccCCCCCCcCCC
Q 019584          189 PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP-QEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       189 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                       .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus        84 -~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           84 -KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             -SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             -cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence             467777788999999999999987 55 68889999999999999995322 4788999999999999999988775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.53  E-value=7.8e-14  Score=133.51  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=44.1

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      ++++|++++|.+++ +|   .+.++++|++|++++|.+++  +|..   ..+|++|++++|.+++ +| .+..+++|++|
T Consensus       132 ~L~~L~L~~n~l~~-lp---~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L  200 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP---ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAI  200 (454)
T ss_dssp             TCCEEECCSSCCSS-CC---CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred             CCCEEECcCCCCCC-Cc---ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence            55555555555553 22   35566666666666666653  3332   2356666666666663 44 46666666666


Q ss_pred             EccCCCCC
Q 019584          173 DLSYSNFD  180 (338)
Q Consensus       173 ~Ls~N~l~  180 (338)
                      ++++|+++
T Consensus       201 ~l~~N~l~  208 (454)
T 1jl5_A          201 YADNNSLK  208 (454)
T ss_dssp             ECCSSCCS
T ss_pred             ECCCCcCC
Confidence            66666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=1.1e-13  Score=132.50  Aligned_cols=141  Identities=21%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++++|.+++. +.   +  .++|++|++++|.+++  +| .+.++++|++|++++|++++ +|..+   .+|++
T Consensus       111 ~~L~~L~l~~n~l~~l-~~---~--~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~  177 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKAL-SD---L--PPLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEF  177 (454)
T ss_dssp             TTCCEEECCSSCCSCC-CS---C--CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCE
T ss_pred             CCCcEEECCCCccCcc-cC---C--CCCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccE
Confidence            3455555555555431 11   0  1567777777777763  55 47777777777777777773 55432   47777


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|++++         +| .+..+++|++|++++|.+++ +|..   .++|++|++++|.++ .+|. +..+++|++
T Consensus       178 L~L~~n~l~~---------l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~  241 (454)
T 1jl5_A          178 IAAGNNQLEE---------LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTT  241 (454)
T ss_dssp             EECCSSCCSS---------CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCE
T ss_pred             EECcCCcCCc---------Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCE
Confidence            7777777542         34 36677777777777777765 3322   135666666666665 4553 556666666


Q ss_pred             eeccCCCCCC
Q 019584          252 LGLCGGPLSK  261 (338)
Q Consensus       252 L~l~~N~l~~  261 (338)
                      |++++|.+++
T Consensus       242 L~l~~N~l~~  251 (454)
T 1jl5_A          242 IYADNNLLKT  251 (454)
T ss_dssp             EECCSSCCSS
T ss_pred             EECCCCcCCc
Confidence            6666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.50  E-value=2.2e-15  Score=143.95  Aligned_cols=164  Identities=18%  Similarity=0.176  Sum_probs=95.7

Q ss_pred             CcEEEEEeCCCCceee----cCCCCccccCcCccEEEccCCCCCCCCCchhhhcCC----CCcEEEcccccCcc----cc
Q 019584           92 GHVVELDLASSCLYGS----INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFS----RLTHLNLSQSYFSG----QI  159 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~----~L~~L~Ls~n~l~~----~~  159 (338)
                      ++++.|++++|.+++.    ++.  .+..+++|++|++++|.++..........++    +|++|++++|.++.    .+
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISS--ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHH--HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHH--HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            3566666666666532    223  4455667777777777664321112223344    57777777777663    34


Q ss_pred             chhhcCCCCCCEEEccCCCCCcccccccCCCcchh-hcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeeccccc
Q 019584          160 PAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL-AENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCR  234 (338)
Q Consensus       160 p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~  234 (338)
                      +..+..+++|++|++++|.+++....    .+... ....++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQ----LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHH----HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHccCCceeEEECCCCcCchHHHH----HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            66666677777777777765321100    11111 22345677777777777653    24555666778888888887


Q ss_pred             CcccCchhcc-----CCCCCCeeeccCCCCCC
Q 019584          235 LQGEFPQEIF-----QLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       235 l~~~~p~~l~-----~l~~L~~L~l~~N~l~~  261 (338)
                      +++..+..+.     ..++|++|++++|.++.
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            7754444333     25578888888887776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.50  E-value=8.9e-16  Score=143.21  Aligned_cols=166  Identities=15%  Similarity=0.144  Sum_probs=124.4

Q ss_pred             CcEEEEEeCCCCceeecCCCCcccc-----CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhh---
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQ-----LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL---  163 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---  163 (338)
                      .+++.|+|++|.++.....  .+..     .++|+.|+|++|.++..........+++|++|+|++|.++......+   
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCT--VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHH--HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHH--HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            5789999999998754322  2322     37999999999998643222233456789999999999985544443   


Q ss_pred             --cCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccCcc
Q 019584          164 --LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       164 --~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  237 (338)
                        ...++|++|+|++|.+++...    ..++..+...++|++|+|++|.+++.    ++..+...++|++|+|++|.+++
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGV----AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHH----HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHhcCCccceeeCCCCCCChHHH----HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence              356899999999999754211    13556678899999999999999753    35667788899999999999986


Q ss_pred             c----CchhccCCCCCCeeeccCCCCCCcC
Q 019584          238 E----FPQEIFQLPNLQFLGLCGGPLSKKC  263 (338)
Q Consensus       238 ~----~p~~l~~l~~L~~L~l~~N~l~~~~  263 (338)
                      .    ++..+...++|++|++++|.++...
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            3    4445566789999999999988643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.2e-13  Score=114.42  Aligned_cols=105  Identities=20%  Similarity=0.245  Sum_probs=77.6

Q ss_pred             EEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEcc
Q 019584           96 ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS  175 (338)
Q Consensus        96 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  175 (338)
                      .+++++|.++. +|.  .+  .++|++|+|++|.++.. .|..+.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        13 ~l~~s~n~l~~-ip~--~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           13 TVDCSGKSLAS-VPT--GI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             EEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEeCCCCcCc-cCc--cC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            56777777764 443  33  37788888888888764 57778888888888888888885555556788888888888


Q ss_pred             CCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584          176 YSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST  214 (338)
Q Consensus       176 ~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  214 (338)
                      +|+++        ...+..+..+++|++|++++|.+...
T Consensus        87 ~N~l~--------~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLK--------SIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCC--------CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccC--------EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            88864        23344577888888888888888754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=2.7e-13  Score=112.80  Aligned_cols=106  Identities=19%  Similarity=0.179  Sum_probs=82.2

Q ss_pred             EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584           95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL  174 (338)
Q Consensus        95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  174 (338)
                      +.+++++|+++ .+|.  .+.  ++|++|+|++|.+++. .|..+.++++|++|+|++|++++..+..+..+++|++|+|
T Consensus        15 ~~l~~~~n~l~-~iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SEEECCSSCCS-SCCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEeCCCCCC-ccCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            46888888885 4444  443  7889999999998864 6778888999999999999998544445688899999999


Q ss_pred             cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584          175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST  214 (338)
Q Consensus       175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  214 (338)
                      ++|+++        ...+..+..+++|++|++++|.+...
T Consensus        89 ~~N~l~--------~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           89 NDNHLK--------SIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CSSCCC--------CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCCccc--------eeCHHHhccccCCCEEEeCCCCcccc
Confidence            999865        23334578889999999999988753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.43  E-value=3.4e-13  Score=124.22  Aligned_cols=134  Identities=17%  Similarity=0.095  Sum_probs=101.9

Q ss_pred             cEEEccCC-CCCCCCCchhhhcCCCCcEEEccc-ccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCC
Q 019584          121 QRLSLFDN-NFNFSEIPSAILNFSRLTHLNLSQ-SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL  198 (338)
Q Consensus       121 ~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l  198 (338)
                      ..++.+++ .++.  +|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|+|+        +..|..|.++
T Consensus        11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l   79 (347)
T 2ifg_A           11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--------FVAPDAFHFT   79 (347)
T ss_dssp             SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--------EECTTGGGSC
T ss_pred             CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--------eeCHHHhcCC
Confidence            35688888 8873  888 99999999999996 9999766678999999999999999965        4556788999


Q ss_pred             CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCc-hhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP-QEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                      ++|++|+|++|+|++..+..+..++ |+.|+|.+|.+...-. ..+..+.......+..+.++|..|..
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~  147 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGP  147 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSC
T ss_pred             cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChH
Confidence            9999999999999976555565555 9999999999884321 12222222233445667788877763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=1.1e-12  Score=120.66  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=87.2

Q ss_pred             cccceeEEcCCCCcEEEEEeCCC-CceeecCCCCccccCcCccEEEccC-CCCCCCCCchhhhcCCCCcEEEcccccCcc
Q 019584           80 CSWDGVKCNEDTGHVVELDLASS-CLYGSINSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFSG  157 (338)
Q Consensus        80 c~w~gv~c~~~~~~l~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~  157 (338)
                      |.|..+.|.            ++ +++. +|.   +..+++|+.|+|++ |.++.. .+..|.++++|++|+|++|+|++
T Consensus         8 C~~~~v~~~------------~~n~l~~-ip~---l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~   70 (347)
T 2ifg_A            8 HGSSGLRCT------------RDGALDS-LHH---LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRF   70 (347)
T ss_dssp             SSSSCEECC------------SSCCCTT-TTT---SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCE
T ss_pred             ccCCEEEcC------------CCCCCCc-cCC---CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccce
Confidence            777666663            34 5553 333   77889999999996 999864 56789999999999999999998


Q ss_pred             ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584          158 QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST  214 (338)
Q Consensus       158 ~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  214 (338)
                      ..|..|..+++|++|+|++|+|+.        ..+..+..++ |++|++.+|.+...
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFNALES--------LSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCSC--------CCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             eCHHHhcCCcCCCEEeCCCCccce--------eCHHHcccCC-ceEEEeeCCCccCC
Confidence            888899999999999999999752        3334455555 99999999999853

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.34  E-value=3.3e-12  Score=117.94  Aligned_cols=160  Identities=21%  Similarity=0.129  Sum_probs=114.0

Q ss_pred             eEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCc-hhhhcCCCCcEEEcccccCccccch-h
Q 019584           85 VKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIP-SAILNFSRLTHLNLSQSYFSGQIPA-E  162 (338)
Q Consensus        85 v~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~-~  162 (338)
                      -.|..     +.++-++++++ .+|.  .+  .+++++|+|++|+++.  +| ..|.++++|++|+|++|++.+.+|. .
T Consensus         7 C~C~~-----~~v~C~~~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~   74 (350)
T 4ay9_X            7 CHCSN-----RVFLCQESKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADV   74 (350)
T ss_dssp             SEEET-----TEEEEESTTCC-SCCT--TC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred             cEeeC-----CEEEecCCCCC-ccCc--Cc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence            46753     25788899888 4555  44  3689999999999974  55 5689999999999999999767765 5


Q ss_pred             hcCCCCCCE-EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhccc--------------------
Q 019584          163 LLELSNLEV-LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLAN--------------------  221 (338)
Q Consensus       163 l~~l~~L~~-L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--------------------  221 (338)
                      |.++++|++ +.+..|+++        ...|..+..+++|++|++++|.+....+..+..                    
T Consensus        75 f~~L~~l~~~l~~~~N~l~--------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~  146 (350)
T 4ay9_X           75 FSNLPKLHEIRIEKANNLL--------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER  146 (350)
T ss_dssp             BCSCTTCCEEEEEEETTCC--------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred             hhcchhhhhhhcccCCccc--------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence            788888775 666778865        234667889999999999999987543322211                    


Q ss_pred             -----C-CCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584          222 -----L-SSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       222 -----l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                           + ..++.|++++|+++ .+|.......+|+++++.+|...+.+|+
T Consensus       147 ~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~  195 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPN  195 (350)
T ss_dssp             TSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred             cchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCH
Confidence                 2 24666777777777 4555555556777777766544445554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=3.2e-13  Score=125.92  Aligned_cols=148  Identities=20%  Similarity=0.133  Sum_probs=111.7

Q ss_pred             CcEEEEEeCCCCceeecCCCCcc-ccCcCccEEEccCCCCCCCCCchhh-----hcCCCCcEEEcccccCccc----cch
Q 019584           92 GHVVELDLASSCLYGSINSTSSL-FQLVHLQRLSLFDNNFNFSEIPSAI-----LNFSRLTHLNLSQSYFSGQ----IPA  161 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~  161 (338)
                      .++++|+|++|.+++....  .+ ..+++|+.|+|++|.++.. ....+     ...++|++|+|++|.++..    ++.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~  177 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLR--TLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME  177 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHH--HTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHH--HHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence            5899999999999754322  23 3467899999999998643 22333     2468999999999999742    455


Q ss_pred             hhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccCcc
Q 019584          162 ELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       162 ~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  237 (338)
                      .+..+++|++|+|++|.+++....    .+...+...++|++|++++|.+++.    ++..+...++|++|+|++|.+++
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g~~----~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEGLE----LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHHHH----HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHhcCCCcCEEeCCCCCCCcHHHH----HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            567889999999999997642111    3456677889999999999999863    34555677999999999999997


Q ss_pred             cCchhccCC
Q 019584          238 EFPQEIFQL  246 (338)
Q Consensus       238 ~~p~~l~~l  246 (338)
                      .....+..+
T Consensus       254 ~g~~~L~~~  262 (372)
T 3un9_A          254 EGRQVLRDL  262 (372)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            655555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.21  E-value=4.6e-11  Score=109.23  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=41.9

Q ss_pred             CCcEEEEEeCCCCce--e-----------------ecCCCCcccc--------CcCccEEEccCCCCCCCCCchhhhcCC
Q 019584           91 TGHVVELDLASSCLY--G-----------------SINSTSSLFQ--------LVHLQRLSLFDNNFNFSEIPSAILNFS  143 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~--~-----------------~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~p~~l~~l~  143 (338)
                      .++++.|||++|.+.  .                 .++ ...|.+        +++|+.|+|.+ .++.. -+..|.+++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~-~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP-AYAFSNVVNGVTKGKQTLEKVILSE-KIKNI-EDAAFKGCD  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC-TTTTEEEETTEEEECTTCCC-CBCT-TCCEE-CTTTTTTCT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccC-HHHhcccccccccccCCCcEEECCc-cccch-hHHHhhcCc
Confidence            357888888888876  1                 111 124556        78888888877 66532 345677888


Q ss_pred             CCcEEEcccccCc
Q 019584          144 RLTHLNLSQSYFS  156 (338)
Q Consensus       144 ~L~~L~Ls~n~l~  156 (338)
                      +|+.|++++|.+.
T Consensus       125 ~L~~l~l~~n~i~  137 (329)
T 3sb4_A          125 NLKICQIRKKTAP  137 (329)
T ss_dssp             TCCEEEBCCSSCC
T ss_pred             ccceEEcCCCCcc
Confidence            8888888887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.20  E-value=1.7e-12  Score=127.81  Aligned_cols=132  Identities=16%  Similarity=0.165  Sum_probs=64.6

Q ss_pred             CcEEEEEeCCCCceeecCCCCcccc-Cc-CccEEEccCCC-CCCCCCchhhhcCCCCcEEEcccccCccc----cchhhc
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQ-LV-HLQRLSLFDNN-FNFSEIPSAILNFSRLTHLNLSQSYFSGQ----IPAELL  164 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~-l~-~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~  164 (338)
                      +++++|+|++|.+++....  .+.. ++ +|++|++++|. ++...++.....+++|++|+|++|.+++.    ++....
T Consensus       112 ~~L~~L~L~~~~i~~~~~~--~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLD--RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHH--HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCCeEEeeccEecHHHHH--HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4677777777776654333  3333 22 36666666654 21111222334566666666666665543    223334


Q ss_pred             CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeec
Q 019584          165 ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL  230 (338)
Q Consensus       165 ~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  230 (338)
                      .+++|++|++++|.+++...    ..++..+.++++|++|++++|.+.+ +|..+..+++|++|++
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~----~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l  250 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISP----KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCG  250 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCH----HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred             cCCCccEEEeeccCCCccCH----HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcc
Confidence            55666666666666432100    1233444455555555555555443 3333333333333333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.18  E-value=1.9e-12  Score=127.42  Aligned_cols=170  Identities=17%  Similarity=0.168  Sum_probs=93.7

Q ss_pred             CcEEEEEeCCCCceeecCCCCccc------------------------cCcCccEEEccC-----------CCCCCCCCc
Q 019584           92 GHVVELDLASSCLYGSINSTSSLF------------------------QLVHLQRLSLFD-----------NNFNFSEIP  136 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~------------------------~l~~L~~L~L~~-----------n~l~~~~~p  136 (338)
                      +++++|++++|.+++.... ..+.                        .+++|++|++++           |.++...++
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHC-TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHH-HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHH-HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            4788888888876533211 0122                        245566666662           333322122


Q ss_pred             hhhhcCCCCcEEEcccccCccccchhhcC-CCCCCEEEcc----CCCCCccccc-----------------cc--CC---
Q 019584          137 SAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLS----YSNFDTFYLK-----------------LQ--KP---  189 (338)
Q Consensus       137 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~~l~-----------------~~--~~---  189 (338)
                      .....+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++.+..                 +.  .+   
T Consensus       372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~  451 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT  451 (592)
T ss_dssp             HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred             HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence            23345667777777666666555555544 6677777775    4454431000                 00  00   


Q ss_pred             --CcchhhcCCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCccc-CchhccCCCCCCeeeccCCCCCCc
Q 019584          190 --GLANLAENLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQGE-FPQEIFQLPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       190 --~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~  262 (338)
                        .+......+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++.....+++|++|++++|+++..
T Consensus       452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence              0111122366677777777776642 344456677777788877777654 333345677788888888777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.06  E-value=2.5e-11  Score=119.35  Aligned_cols=109  Identities=18%  Similarity=0.176  Sum_probs=71.6

Q ss_pred             CcEEEEEeCCCCceeecCCCCccc-cCcCccEEEccCC-CCCCCCCchhhhcCCCCcEEEcccccCccccchhh----cC
Q 019584           92 GHVVELDLASSCLYGSINSTSSLF-QLVHLQRLSLFDN-NFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL----LE  165 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~  165 (338)
                      +++++|+|++|.+++....  .+. .+++|+.|++++| .++...++....++++|++|++++|.+++..+..+    ..
T Consensus       105 ~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCCeEEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            5788899998888765544  454 5788888998888 44432244455578888899988888775444433    35


Q ss_pred             CCCCCEEEccCCC--CCcccccccCCCcchhhcCCCCCCEEEccCC
Q 019584          166 LSNLEVLDLSYSN--FDTFYLKLQKPGLANLAENLTNLKALDLINV  209 (338)
Q Consensus       166 l~~L~~L~Ls~N~--l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N  209 (338)
                      +++|++|++++|.  ++.       ..++.....+++|++|++++|
T Consensus       183 ~~~L~~L~l~~~~~~~~~-------~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSF-------SALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCCEEECTTCCSCCCH-------HHHHHHHHHCTTCCEEECCTT
T ss_pred             CCcCcEEEecccCCcCCH-------HHHHHHHHhCCCCcEEecCCC
Confidence            6688888888875  211       122233344566666666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=6.7e-10  Score=101.42  Aligned_cols=164  Identities=14%  Similarity=0.093  Sum_probs=105.0

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccC-------c--------
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF-------S--------  156 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l-------~--------  156 (338)
                      .+++.|+|.+ .++.....  .|.++++|+.+++++|.+... .+..|.++.++.++.+..+..       .        
T Consensus       101 ~~L~~l~L~~-~i~~I~~~--aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDA--AFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTT--TTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             CCCcEEECCc-cccchhHH--HhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence            5788999988 77765555  788999999999999987532 344555555555555443111       0        


Q ss_pred             -----------cccchh---------------------------h-cCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584          157 -----------GQIPAE---------------------------L-LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN  197 (338)
Q Consensus       157 -----------~~~p~~---------------------------l-~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~  197 (338)
                                 +.++..                           + ..+++|+.+++++|+++.        .....|.+
T Consensus       177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~--------I~~~aF~~  248 (329)
T 3sb4_A          177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT--------IPDFTFAQ  248 (329)
T ss_dssp             CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE--------ECTTTTTT
T ss_pred             ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce--------ecHhhhhC
Confidence                       000000                           0 025778888888777542        22345777


Q ss_pred             CCCCCEEEccCCCCCCCCchhcccCCCCC-eeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584          198 LTNLKALDLINVHISSTVPHTLANLSSLR-FSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       198 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      +++|+++++.+| +....+..|.++.+|+ .+++.+ .++...+.+|..+++|+.+++++|.++.--+..+..
T Consensus       249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~  319 (329)
T 3sb4_A          249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN  319 (329)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred             CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence            788888888777 6655566677778887 888877 666444567777788888888777776654444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.02  E-value=2e-11  Score=120.02  Aligned_cols=115  Identities=12%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             CCCCcEEEcccccCccccchhhc-CCCCCCEEEcc--C----CCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584          142 FSRLTHLNLSQSYFSGQIPAELL-ELSNLEVLDLS--Y----SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST  214 (338)
Q Consensus       142 l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  214 (338)
                      +++|++|+++.|.+++..+..+. .+++|+.|+++  +    |.+++....   ..++..+..+++|++|++++ .+++.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~---~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD---IGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH---HHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh---hHHHHHHhhCCCccEEeecC-cccHH
Confidence            55555555555555544333443 36677777776  3    333311111   12223344556666666654 44443


Q ss_pred             Cchhccc-CCCCCeeecccccCcccCchhc-cCCCCCCeeeccCCCCC
Q 019584          215 VPHTLAN-LSSLRFSSLSGCRLQGEFPQEI-FQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       215 ~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~  260 (338)
                      .+..++. +++|++|+|++|.+++..+..+ ..+++|++|++++|+++
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            3344443 5666666666666654444333 44566666666666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.92  E-value=1.3e-11  Score=109.28  Aligned_cols=97  Identities=22%  Similarity=0.252  Sum_probs=65.9

Q ss_pred             EEcccccCccccch----hhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCC
Q 019584          148 LNLSQSYFSGQIPA----ELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLS  223 (338)
Q Consensus       148 L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  223 (338)
                      ++++.|... .++.    ...++++|++|+|++|+++++      ..++..+..+++|+.|+|++|++++.  ..+..+.
T Consensus       148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~  218 (267)
T 3rw6_A          148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK  218 (267)
T ss_dssp             CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCC------GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred             ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCC------ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence            456666433 2222    224578888888888887631      14556677888888888888888864  3344444


Q ss_pred             --CCCeeecccccCcccCch-------hccCCCCCCeee
Q 019584          224 --SLRFSSLSGCRLQGEFPQ-------EIFQLPNLQFLG  253 (338)
Q Consensus       224 --~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~  253 (338)
                        +|++|+|++|.+++.+|.       .+..+++|+.||
T Consensus       219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence              888889999888876652       356788888876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.90  E-value=5.1e-10  Score=103.64  Aligned_cols=160  Identities=19%  Similarity=0.194  Sum_probs=101.7

Q ss_pred             CcEEEEEeCCCCce---------eecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh
Q 019584           92 GHVVELDLASSCLY---------GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE  162 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~---------~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  162 (338)
                      ++++.|.+.+....         +.+..  .+..+++|+.|++++|.-  ..++. + .+++|++|+|..|.+.......
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~--ll~~~P~L~~L~L~g~~~--l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLNNLKIKGTNN--LSIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHH--HHHTCTTCCEEEEECCBT--CBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHH--HHhcCCCCcEEEEeCCCC--ceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            47888888654321         11112  345678899999988731  11333 3 3788999999888876544444


Q ss_pred             hc--CCCCCCEEEccCC--CCC-cccccccCCCcchhh--cCCCCCCEEEccCCCCCCCCchhcc---cCCCCCeeeccc
Q 019584          163 LL--ELSNLEVLDLSYS--NFD-TFYLKLQKPGLANLA--ENLTNLKALDLINVHISSTVPHTLA---NLSSLRFSSLSG  232 (338)
Q Consensus       163 l~--~l~~L~~L~Ls~N--~l~-~~~l~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~  232 (338)
                      +.  .+++|++|+|+.+  ... ...+    ..+...+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+|+.
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~----~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDM----NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCG----GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             HHHccCCCCcEEEEeccccccccchhH----HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            43  6889999988632  111 0000    0111222  2478999999999888754444443   467899999999


Q ss_pred             ccCcccC----chhccCCCCCCeeeccCCCCCC
Q 019584          233 CRLQGEF----PQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       233 N~l~~~~----p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      |.+++..    +..+..+++|+.|++++|.++.
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            9988643    3344456889999999888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.90  E-value=6.2e-10  Score=93.22  Aligned_cols=66  Identities=11%  Similarity=0.096  Sum_probs=29.3

Q ss_pred             ccCcCccEEEccCC-CCCCC---CCchhhhcCCCCcEEEcccccCccc----cchhhcCCCCCCEEEccCCCCC
Q 019584          115 FQLVHLQRLSLFDN-NFNFS---EIPSAILNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNFD  180 (338)
Q Consensus       115 ~~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  180 (338)
                      ...+.|+.|+|++| .+...   .+...+...++|++|+|++|.+...    +...+...++|++|+|++|.++
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34455555555555 44321   0122333444555555555555422    2222333344555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.84  E-value=4e-10  Score=94.39  Aligned_cols=120  Identities=15%  Similarity=0.071  Sum_probs=79.4

Q ss_pred             hhhhcCCCCcEEEcccc-cCccc----cchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCC
Q 019584          137 SAILNFSRLTHLNLSQS-YFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI  211 (338)
Q Consensus       137 ~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  211 (338)
                      ..+...++|++|+|++| .+...    +...+...++|++|+|++|.+.+....    .+...+...++|++|+|++|.+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~----~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF----ALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH----HHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH----HHHHHHHhCCCcCEEECcCCcC
Confidence            44556778888888887 77632    344455667888888888876532111    2345556667788888888887


Q ss_pred             CCC----CchhcccCCCCCeeec--ccccCccc----CchhccCCCCCCeeeccCCCCC
Q 019584          212 SST----VPHTLANLSSLRFSSL--SGCRLQGE----FPQEIFQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       212 ~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~  260 (338)
                      ++.    +...+...++|++|+|  ++|.++..    +.+.+...++|++|++++|.+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            653    3455666677888888  77887754    3344555677888888887764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=1.5e-08  Score=93.79  Aligned_cols=152  Identities=15%  Similarity=0.202  Sum_probs=103.6

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh--cCCCCcEEEccc--ccCccc-----cch
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL--NFSRLTHLNLSQ--SYFSGQ-----IPA  161 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~--~l~~L~~L~Ls~--n~l~~~-----~p~  161 (338)
                      .++++.|+|+++.-. .++   .+ .+++|+.|+|..+.++.. ....+.  .+++|++|+|+.  |...+.     +..
T Consensus       171 ~P~L~~L~L~g~~~l-~l~---~~-~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIG---KK-PRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCC---SC-BCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             CCCCcEEEEeCCCCc-eec---cc-cCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            468999999987311 122   23 388999999999887543 233444  789999999863  222111     112


Q ss_pred             hh--cCCCCCCEEEccCCCCCcccccccCCCcchhh---cCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeeccc
Q 019584          162 EL--LELSNLEVLDLSYSNFDTFYLKLQKPGLANLA---ENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSG  232 (338)
Q Consensus       162 ~l--~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~  232 (338)
                      .+  ..+++|++|+|.+|.+.+        ..+..+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|+|++
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~--------~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQN--------VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHH--------HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             HHhcCCCCCcCEEeCCCCCCch--------HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            22  247899999999998642        112222   3578999999999999864    344456679999999999


Q ss_pred             ccCcccCchhccC-CCCCCeeeccCCC
Q 019584          233 CRLQGEFPQEIFQ-LPNLQFLGLCGGP  258 (338)
Q Consensus       233 N~l~~~~p~~l~~-l~~L~~L~l~~N~  258 (338)
                      |.++...-..+.. +  ...+++++|+
T Consensus       317 n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          317 NYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             BBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            9998655554543 3  3567888876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.53  E-value=2.1e-08  Score=88.54  Aligned_cols=82  Identities=21%  Similarity=0.218  Sum_probs=65.0

Q ss_pred             hcCCCCcEEEcccccCcc--ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-
Q 019584          140 LNFSRLTHLNLSQSYFSG--QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-  216 (338)
Q Consensus       140 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-  216 (338)
                      .++++|++|+|++|.+++  .+|..+..+++|+.|+|++|++++.  .    . ...+..+ +|++|++++|.+.+.+| 
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~----~-l~~l~~l-~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R----E-LDKIKGL-KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G----G-GGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h----h-hhhcccC-CcceEEccCCcCccccCc
Confidence            568999999999999997  5567778999999999999998642  0    1 1223344 99999999999987665 


Q ss_pred             ------hhcccCCCCCeee
Q 019584          217 ------HTLANLSSLRFSS  229 (338)
Q Consensus       217 ------~~l~~l~~L~~L~  229 (338)
                            ..+..+++|+.||
T Consensus       239 ~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEES
T ss_pred             chhHHHHHHHHCcccCeEC
Confidence                  2467889999887

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.52  E-value=8.3e-07  Score=83.22  Aligned_cols=159  Identities=10%  Similarity=0.015  Sum_probs=83.2

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccc------------------
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS------------------  153 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n------------------  153 (338)
                      .+++.+++++|.++.....  .|. ..+|+.+.+.++ ++.. -...|.++++|+.+++.++                  
T Consensus       180 ~~L~~l~l~~n~l~~I~~~--aF~-~~~L~~l~lp~~-l~~I-~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~  254 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPAS--TFV-YAGIEEVLLPVT-LKEI-GSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVK  254 (401)
T ss_dssp             TTCCEEECTTSCCSEECTT--TTT-TCCCSEEECCTT-CCEE-CTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             ccCCeeecCCCcceEechh--hEe-ecccCEEEeCCc-hhee-hhhHhhCCCCCCEEecCCCccCccccccccCCccEEE
Confidence            4688888888777644333  333 456666666543 3221 2344555556666665543                  


Q ss_pred             ---cCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeec
Q 019584          154 ---YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL  230 (338)
Q Consensus       154 ---~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  230 (338)
                         .++..-...|.++++|+.+++.+|.+......   ..-+..|.++++|+.+++.+ .++......|.++.+|+.++|
T Consensus       255 lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~---~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          255 LPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA---MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC---EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred             eCCCccEEChhHhhCCCCCCEEEeCCccccCCccc---EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence               22212233455556666666655543200000   01123455666666666663 354444455666666666666


Q ss_pred             ccccCcccCchhccCCCCCCeeeccCCCCCC
Q 019584          231 SGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       231 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      ..| ++..-..+|..+ +|+.+++.+|.+..
T Consensus       331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            444 443334455566 67777777665443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.41  E-value=1.6e-06  Score=81.20  Aligned_cols=157  Identities=11%  Similarity=0.099  Sum_probs=100.8

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      +++.+++.+ .+......  .|.++.+|+.+++.+|.++.  ++...-...+|+.+.+.++ ++..-...|.++++|+.+
T Consensus       158 ~L~~i~lp~-~l~~I~~~--aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l  231 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKED--IFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI  231 (401)
T ss_dssp             CCCEEECCT-TCCEECSS--TTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred             CceEEEeCC-CccEehHH--HhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence            466677765 45444444  77888888888888888764  3333333678888888754 653445577888888888


Q ss_pred             EccCCCCCcc-------------cccccCCCc-chhhcCCCCCCEEEccCCCCC-----CCCchhcccCCCCCeeecccc
Q 019584          173 DLSYSNFDTF-------------YLKLQKPGL-ANLAENLTNLKALDLINVHIS-----STVPHTLANLSSLRFSSLSGC  233 (338)
Q Consensus       173 ~Ls~N~l~~~-------------~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N  233 (338)
                      ++..| ++..             .+.-.-..+ ...|.++++|+.+++.+|.+.     ...+..|..+++|+.++|.+ 
T Consensus       232 ~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          232 EIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             ECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred             ecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence            88764 2211             000000011 345677788888888877664     23456677788888888874 


Q ss_pred             cCcccCchhccCCCCCCeeeccCC
Q 019584          234 RLQGEFPQEIFQLPNLQFLGLCGG  257 (338)
Q Consensus       234 ~l~~~~p~~l~~l~~L~~L~l~~N  257 (338)
                      .++......|..+++|+.+++..|
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc
Confidence            466444556777888888888654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.05  E-value=2e-06  Score=70.78  Aligned_cols=87  Identities=11%  Similarity=0.157  Sum_probs=64.2

Q ss_pred             CCCCcEEEcccccCccccchhhcCCCCCCEEEccCCC-CCcccccccCCCcchhhcCC----CCCCEEEccCCC-CCCCC
Q 019584          142 FSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN-FDTFYLKLQKPGLANLAENL----TNLKALDLINVH-ISSTV  215 (338)
Q Consensus       142 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~l~~~~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~  215 (338)
                      -.+|++||++++.++..--..+..+++|++|+|+++. +++..        -..+..+    ++|++|++++|. +++.-
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--------L~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--------LERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH--------HHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH--------HHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            3479999999999886655667889999999999985 44311        1233443    478999999875 77655


Q ss_pred             chhcccCCCCCeeeccccc-Cc
Q 019584          216 PHTLANLSSLRFSSLSGCR-LQ  236 (338)
Q Consensus       216 p~~l~~l~~L~~L~Ls~N~-l~  236 (338)
                      -..+..+++|++|+++++. ++
T Consensus       132 l~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCC
Confidence            5667788899999998875 54

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.05  E-value=2.6e-06  Score=70.08  Aligned_cols=88  Identities=13%  Similarity=0.121  Sum_probs=65.6

Q ss_pred             CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccccc-CccccchhhcCC----CCCCEEEccCCC-CCcccccccCCC
Q 019584          117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY-FSGQIPAELLEL----SNLEVLDLSYSN-FDTFYLKLQKPG  190 (338)
Q Consensus       117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~l~~~~~~  190 (338)
                      -..|+.||++++.++.. --..+.++++|++|+|++|. +++.--..+..+    ++|++|++++|. +++.       .
T Consensus        60 ~~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-------G  131 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-------G  131 (176)
T ss_dssp             CCCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-------H
T ss_pred             CceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-------H
Confidence            35799999999998765 33457889999999999995 775544556664    479999999985 5542       1


Q ss_pred             cchhhcCCCCCCEEEccCCC-CCC
Q 019584          191 LANLAENLTNLKALDLINVH-ISS  213 (338)
Q Consensus       191 ~~~~~~~l~~L~~L~Ls~N~-l~~  213 (338)
                      + ..+..+++|++|+++++. +++
T Consensus       132 l-~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 I-IALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             H-HHGGGCTTCCEEEEESCTTCCC
T ss_pred             H-HHHhcCCCCCEEECCCCCCCCc
Confidence            2 245678999999999985 443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.93  E-value=8.1e-06  Score=68.41  Aligned_cols=90  Identities=14%  Similarity=0.120  Sum_probs=42.2

Q ss_pred             hcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccc---cC
Q 019584          163 LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGC---RL  235 (338)
Q Consensus       163 l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N---~l  235 (338)
                      +..-+.|+.|+|++|.+.+...    ..+.+.+..-+.|++|+|++|.|++.    +.+.+..-+.|++|+|++|   .+
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga----~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i  141 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEA----RGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  141 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHH----TTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HhhCCCcCEEEccCCCCChHHH----HHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence            3444455555555555432111    12333444445555555555555432    2223333455666666543   22


Q ss_pred             cc----cCchhccCCCCCCeeeccC
Q 019584          236 QG----EFPQEIFQLPNLQFLGLCG  256 (338)
Q Consensus       236 ~~----~~p~~l~~l~~L~~L~l~~  256 (338)
                      ..    .+.+.+...+.|+.|+++.
T Consensus       142 g~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          142 GNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             CHHHHHHHHHHHHhCCCcCeEeccC
Confidence            32    1334445556666666643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.76  E-value=1.2e-05  Score=67.34  Aligned_cols=117  Identities=12%  Similarity=0.098  Sum_probs=67.2

Q ss_pred             cCcCccEEEccCC-CCCCC---CCchhhhcCCCCcEEEcccccCccc----cchhhcCCCCCCEEEccCCCCCccccccc
Q 019584          116 QLVHLQRLSLFDN-NFNFS---EIPSAILNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQ  187 (338)
Q Consensus       116 ~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~  187 (338)
                      +-+.|+.|+|++| .+...   .+.+.+..-+.|+.|+|++|.+...    +.+.+..-+.|++|+|++|.|++....  
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~--  116 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA--  116 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH--
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH--
Confidence            3456666666664 54321   1234455566777777777777633    233344456777777777776532111  


Q ss_pred             CCCcchhhcCCCCCCEEEccCC---CCCC----CCchhcccCCCCCeeecccccCc
Q 019584          188 KPGLANLAENLTNLKALDLINV---HISS----TVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       188 ~~~~~~~~~~l~~L~~L~Ls~N---~l~~----~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                        .+.+.+..-+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+.
T Consensus       117 --ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 --RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             --HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             --HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              23344555566888888754   2332    13344555677888888777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.74  E-value=4.7e-05  Score=59.45  Aligned_cols=60  Identities=20%  Similarity=0.266  Sum_probs=34.5

Q ss_pred             EEEccCCCCC-CCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          203 ALDLINVHIS-STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       203 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..+..+++|+.|+|++|++.|+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            4555555554 23443322  356667777777664333445566667777777777776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.46  E-value=0.00062  Score=63.18  Aligned_cols=129  Identities=16%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .|.++..|+.+.+.++....  -...+.++..|+.+.+.. .++..-...|.++.+|+.+++..+ ++        ..-.
T Consensus       260 aF~~c~~L~~i~lp~~~~~I--~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~--------~I~~  327 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSI--GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT--------QILD  327 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEE--CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC--------EECT
T ss_pred             eeeecccccEEeccccccee--cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc--------EehH
Confidence            34455555555554433211  223455555666666542 233222234555566666666543 11        0112


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCC
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGG  257 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  257 (338)
                      ..|.++.+|+.+.+..+ ++......|.++.+|+.+++.++...   ...+....+|+.+.+..|
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred             hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence            34555666666666433 44333455556666666666555432   123444455555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.26  E-value=0.0012  Score=61.33  Aligned_cols=146  Identities=17%  Similarity=0.090  Sum_probs=96.3

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      .++.+.+.... ......  .+..+..|+.+.+..+....  ....+..+..++.+....+.+.   ...+..+.+|+.+
T Consensus       231 ~l~~i~ip~~~-~~i~~~--~f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i  302 (394)
T 4fs7_A          231 GVKNIIIPDSF-TELGKS--VFYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEV  302 (394)
T ss_dssp             CCCEEEECTTC-CEECSS--TTTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEE
T ss_pred             CCceEEECCCc-eecccc--cccccccceeEEcCCCccee--eccccccccccceeccCceeec---ccccccccccccc
Confidence            56666665432 222223  67778888888888765431  3445777888888877665432   2356777888888


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL  252 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  252 (338)
                      .+..+ ++        ..-...|.++.+|+.+++..+ ++......|.++.+|+.+++..| ++..-..+|..+++|+.+
T Consensus       303 ~l~~~-i~--------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          303 KLLDS-VK--------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             EECTT-CC--------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred             ccccc-cc--------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence            88765 22        112345777888888888654 55444567778888888888776 653445577788888888


Q ss_pred             eccCC
Q 019584          253 GLCGG  257 (338)
Q Consensus       253 ~l~~N  257 (338)
                      ++..+
T Consensus       372 ~lp~~  376 (394)
T 4fs7_A          372 ELPKR  376 (394)
T ss_dssp             EEEGG
T ss_pred             EECCC
Confidence            87654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.23  E-value=0.0022  Score=58.91  Aligned_cols=132  Identities=12%  Similarity=0.071  Sum_probs=91.1

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+.....|+.+.+..+- ... ....+.++..|+.+.+..+ ++..-...+.++.+|+.+++..+- +        ..-.
T Consensus       212 ~f~~~~~l~~i~~~~~~-~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i-~--------~i~~  279 (379)
T 4h09_A          212 GFSYGKNLKKITITSGV-TTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV-K--------TVPY  279 (379)
T ss_dssp             TTTTCSSCSEEECCTTC-CEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC-S--------EECT
T ss_pred             ccccccccceeeeccce-eEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc-e--------eccc
Confidence            34455667777765542 211 2345677888888888765 443344567778888888886552 2        1123


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCC
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGG  257 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  257 (338)
                      ..+.++.+|+.+.+.++.++......|.++.+|+.+.|..+ ++..-..+|..+++|+.+.+..+
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            46788899999999988887656678889999999999765 55334457888889998887554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.20  E-value=0.002  Score=59.77  Aligned_cols=127  Identities=9%  Similarity=0.009  Sum_probs=82.0

Q ss_pred             ccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchh
Q 019584          115 FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL  194 (338)
Q Consensus       115 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~  194 (338)
                      .....|+.+.+..+.-. . -...+.++..|+.+.+..+... .....+..+..++.+....+.+.           ...
T Consensus       227 ~~~~~l~~i~ip~~~~~-i-~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-----------~~~  292 (394)
T 4fs7_A          227 LSKTGVKNIIIPDSFTE-L-GKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-----------EKT  292 (394)
T ss_dssp             TTTCCCCEEEECTTCCE-E-CSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-----------TTT
T ss_pred             cccCCCceEEECCCcee-c-ccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-----------ccc
Confidence            34466777777654321 1 2345667788888888776544 44456777788887777655321           234


Q ss_pred             hcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCC
Q 019584          195 AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGG  257 (338)
Q Consensus       195 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  257 (338)
                      +..+.+|+.+.+..+ +.......|.++.+|+.+++.++ ++..-..+|..+.+|+.+++..|
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            667788888888654 54444566777888888888654 55333456777888888887655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.97  E-value=0.0031  Score=58.42  Aligned_cols=109  Identities=13%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             hhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCch
Q 019584          138 AILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPH  217 (338)
Q Consensus       138 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  217 (338)
                      .|.++.+|+.+.+.++... .-...|.++++|+.+.+..+ ++        ..-...|.++.+|+.+++..+ ++.....
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~--------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT--------ELPESVFAGCISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCCc-cc--------ccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence            5667788888888766543 44456788889999988643 22        112356788999999999765 5544457


Q ss_pred             hcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCC
Q 019584          218 TLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGP  258 (338)
Q Consensus       218 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  258 (338)
                      .|.++.+|+.+.+..+ ++..-..+|..+++|+.+++.+|.
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            7889999999999765 663445678899999999998874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.88  E-value=0.0059  Score=56.02  Aligned_cols=121  Identities=13%  Similarity=0.046  Sum_probs=86.2

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+.++..|+.+.+..+ ++.. -...+.++.+|+.+.+..+ ++..-...|..+.+|+.+++.++.++.        .-.
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~--------I~~  303 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET--------LEP  303 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE--------ECT
T ss_pred             cccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceeccccccccccccccccccccccce--------ehh
Confidence            6678889999999776 3322 3456788999999999765 552334568889999999999887542        224


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCC
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQL  246 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  246 (338)
                      ..|.++.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++..-..+|...
T Consensus       304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            57889999999999765 65444567889999999988654 442223344443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.40  E-value=0.0053  Score=47.57  Aligned_cols=36  Identities=22%  Similarity=0.240  Sum_probs=20.3

Q ss_pred             CCcEEEcccccCccccchhhcCCCCCCEEEccCCCC
Q 019584          144 RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNF  179 (338)
Q Consensus       144 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  179 (338)
                      +|++|+|++|+|+..-+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            456666666666633233445566666666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 3e-13
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 19/126 (15%)

Query: 35  LCHDRERSALLNFKESLVINQTASSYSSTYPKV-ATWKPDEKNKDCC--SWDGVKCNEDT 91
           LC+ +++ ALL  K+ L             P   ++W P     DCC  +W GV C+ DT
Sbjct: 2   LCNPQDKQALLQIKKDL-----------GNPTTLSSWLPTT---DCCNRTWLGVLCDTDT 47

Query: 92  G--HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLN 149
               V  LDL+   L       SSL  L +L  L +   N     IP AI   ++L +L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 150 LSQSYF 155
           ++ +  
Sbjct: 108 ITHTNV 113

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 205 DLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL------GLCGGP 258
           DL N  I  T+P  L  L  L   ++S   L GE P +   L             LCG P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

Query: 259 LSK 261
           L  
Sbjct: 309 LPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
                    NN  +  +P  +     L  LN+S +   G+IP +   L   +V   + + 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 179 F 179
            
Sbjct: 303 C 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 21/195 (10%)

Query: 70  WKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN 129
              +           +       ++ EL L  +     +    +L  L +L  L L +N 
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLANNQ 252

Query: 130 FNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKP 189
            +     + +   ++LT L L  +  S   P   L       L+ +     +    L+  
Sbjct: 253 ISN---LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 190 GLANLAEN----------LTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEF 239
               L  N          LT L+ L   N  +S     +LANL+++ + S    ++    
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 240 PQEIFQLPNLQFLGL 254
           P  +  L  +  LGL
Sbjct: 368 P--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 6e-07
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 65  PKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLS 124
           P            +    + +    +  ++  L L     + +I+  S +  L  LQRL 
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY----FNNISDISPVSSLTKLQRLF 335

Query: 125 LFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176
             +N        S++ N + +  L+   +  S   P  L  L+ +  L L+ 
Sbjct: 336 FANNKV---SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 19/163 (11%)

Query: 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178
               L L +N            N   L  L L  +  S   P     L  LE L LS + 
Sbjct: 32  DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 179 FDTFYLKLQKPG-------------LANLAENLTNLKALDLINVHISST--VPHTLANLS 223
                 K+ K                 ++   L  +  ++L    + S+         + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 224 SLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266
            L +  ++   +    PQ +   P+L  L L G  ++K    S
Sbjct: 151 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAAS 190

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            ++ ++L ++ L  S     +   +  L  + + D N   + IP  +     LT L+L  
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--TTIPQGL--PPSLTELHLDG 180

Query: 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212
           +  +    A L  L+NL  L LS+++                  N  +L+ L L N  + 
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVD--------NGSLANTPHLRELHLNNNKL- 231

Query: 213 STVPHTLANLSSLRFSSLSGCRLQG------EFPQEIFQLPNLQFLGLCGGPLS 260
             VP  LA+   ++   L    +          P    +  +   + L   P+ 
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 190 GLANLAENL-TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPN 248
           GL  + ++L  +   LDL N  I+        NL +L    L   ++    P     L  
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 249 LQFLGLCGGPLSK 261
           L+ L L    L +
Sbjct: 81  LERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 14/165 (8%)

Query: 104 LYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAI---LNFSRLTHLNLSQSYFSGQIP 160
           LY S N    L + +      L  +    +++  ++   LN   +  L  +    SG   
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 161 AELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLA 220
                +  L  + ++ +N  T    L             +L  L L    I+     +L 
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGL-----------PPSLTELHLDGNKITKVDAASLK 192

Query: 221 NLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265
            L++L    LS   +       +   P+L+ L L    L K    
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 237

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 16/98 (16%)

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS----STVPHTLANLS 223
           +++ LD+           L     A L   L   + + L +  ++      +   L    
Sbjct: 3   DIQSLDIQCEE-------LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP 55

Query: 224 SLRFSSLSGCRLQGEFPQEIFQL-----PNLQFLGLCG 256
           +L   +L    L       + Q        +Q L L  
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 119 HLQRLSLFDNNFN---FSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE-----LSNLE 170
            L+ L L D + +    S + + +L    L  L+LS +        +L+E        LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKAL 204
            L L    +           L  L ++  +L+ +
Sbjct: 430 QLVLYDIYWSEEMEDR----LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLD 173
           + +Q L +     + +     +    +   + L     +      I + L     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDL 206
           L  +      +     GL         ++ L L
Sbjct: 62  LRSNELGDVGVHCVLQGLQT---PSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 4e-05
 Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 9/96 (9%)

Query: 96  ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFN---FSEIPSAILNFSRLTHLNLSQ 152
            LD+    L         L  L   Q + L D         +I SA+     L  LNL  
Sbjct: 6   SLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 153 SYFSGQIPAELLEL-----SNLEVLDLSYSNFDTFY 183
           +         +L+        ++ L L         
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 141 NFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLAN-LA 195
             S L  L L+    S      + A LL   +L  LDLS +      +      L   + 
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL----QLVESVR 422

Query: 196 ENLTNLKALDLINVHISSTVPHTLANL 222
           +    L+ L L +++ S  +   L  L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 8e-04
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 13/95 (13%)

Query: 167 SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLA-----N 221
           S L VL L+  +            LA       +L+ LDL N  +       L       
Sbjct: 369 SVLRVLWLADCDVSDSSCS----SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 222 LSSLRFSSLSGCRLQGEFPQEIFQL----PNLQFL 252
              L    L       E    +  L    P+L+ +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 17/105 (16%)

Query: 147 HLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL 206
                 +  S +I +      +LE L++S +             L  L      L+ L  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNK------------LIELPALPPRLERLIA 311

Query: 207 INVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251
              H++  VP    NL  L    +    L+ EFP     + +L+ 
Sbjct: 312 SFNHLAE-VPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRM 351

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 21/149 (14%), Positives = 40/149 (26%), Gaps = 17/149 (11%)

Query: 111 TSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170
              + +     + +L            A      L   +      +  +      +  L 
Sbjct: 13  KLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSS----MAATLRIIEENIPELL 68

Query: 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL 230
            L+LS +             ++++ +   NLK L+L    + S           L    L
Sbjct: 69  SLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 231 SGCRLQGEFPQE-------IFQLPNLQFL 252
            G  L   F  +         + P L  L
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 13/139 (9%)

Query: 131 NFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPG 190
              ++   +      +   L       +   +L+  +   VL+   S   T         
Sbjct: 8   QVEQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAAT--------- 56

Query: 191 LANLAENLTNLKALDLINVHISST--VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPN 248
           L  + EN+  L +L+L N  +     +   +    +L+  +LSG  L+ E   +  +   
Sbjct: 57  LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 249 LQFLGLCGGPLSKKCNNSE 267
           L+ L L G  LS    +  
Sbjct: 117 LEELWLDGNSLSDTFRDQS 135

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 146 THLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALD 205
             L+L+       +   LL    +       S  D    +   P           ++ +D
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSP---------FRVQHMD 52

Query: 206 LINVHIS-STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252
           L N  I  ST+   L+  S L+  SL G RL       + +  NL  L
Sbjct: 53  LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 93  HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152
            V+      S +   +   +  F    +Q + L ++    S +   +   S+L +L+L  
Sbjct: 24  GVIAFRCPRSFMDQPL---AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 153 SYFSGQIPAELLELSNLEVLD 173
              S  I   L + SNL  L+
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLN 101

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 128 NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187
           +  N + +P  +      T L+LS++       A L+  + L  L+L  +      +   
Sbjct: 18  DKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT 75

Query: 188 KPGL 191
            P L
Sbjct: 76  LPVL 79

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 8/145 (5%)

Query: 108 INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS 167
           I   +     V  + L L         I +      +   ++ S +            L 
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLR 63

Query: 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227
            L+ L ++ +        L +         LTN   ++L ++   +++            
Sbjct: 64  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL----CI 119

Query: 228 SSLSGCRLQGEFPQEIFQLPNLQFL 252
                   +      I+++P ++ L
Sbjct: 120 LRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS 175
            L +L +L+    + N     S + +   L  ++L  +  S   P  L   SNL ++ L+
Sbjct: 168 PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.24
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.19
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.07
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.79

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=9e-33  Score=250.31  Aligned_cols=215  Identities=27%  Similarity=0.374  Sum_probs=166.6

Q ss_pred             CCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCc--ccceeEEcCCC--CcEEEEEeCCCCceee--c
Q 019584           35 LCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCC--SWDGVKCNEDT--GHVVELDLASSCLYGS--I  108 (338)
Q Consensus        35 ~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c--~w~gv~c~~~~--~~l~~L~Ls~n~l~~~--~  108 (338)
                      -|.++|++||++||+.+.++.          .+.+|.   .++|||  .|+||+|+...  .+|++|||+++++.|.  +
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~----------~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~l   68 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT----------TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG----------GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC----------cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCC
Confidence            599999999999999997643          678998   667899  59999998643  4899999999999874  5


Q ss_pred             CCCCccccCcCccEEEccC-CCCCCCCCchhhhcCCCCcEEEcccccCccccchh------------------------h
Q 019584          109 NSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE------------------------L  163 (338)
Q Consensus       109 ~~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------------------------l  163 (338)
                      |.  .++++++|++|+|++ |.+++. +|..+.++++|++|+|++|++.+..+..                        +
T Consensus        69 p~--~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          69 PS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             CG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             Ch--HHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence            56  999999999999997 888876 9999999999999999999887654444                        4


Q ss_pred             cCCCCCCEEEccCCCCCcc-c------------ccc---------------------------cCCCcchhhcCCCCCCE
Q 019584          164 LELSNLEVLDLSYSNFDTF-Y------------LKL---------------------------QKPGLANLAENLTNLKA  203 (338)
Q Consensus       164 ~~l~~L~~L~Ls~N~l~~~-~------------l~~---------------------------~~~~~~~~~~~l~~L~~  203 (338)
                      ..++.|+++++++|.+++. +            +..                           ..+.+|..+..+++|+.
T Consensus       146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~  225 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             ccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555555554311 0            000                           00123444556667777


Q ss_pred             EEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          204 LDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       204 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                      +++++|.+.+.+ +.++.+++|++|+|++|+++|.+|+.+.++++|++|+|++|.++|.+|+.
T Consensus       226 l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         226 IHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            777777777644 35677889999999999999999999999999999999999999998853

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.2e-21  Score=166.86  Aligned_cols=166  Identities=24%  Similarity=0.291  Sum_probs=122.3

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|+|++|.|++..+.  .|.++++|++|+|++|.++.  ++ .+..+++|++|+|++|+++ ..+..+..+++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~--~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLA--TLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGG--GGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE
T ss_pred             cCCCEEECcCCcCCCcCHH--Hhhccccccccccccccccc--cc-ccccccccccccccccccc-cccccccccccccc
Confidence            5789999999999876656  78889999999999998863  44 3577889999999999988 55677888888999


Q ss_pred             EEccCCCCCccccc------------cc----CCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccC
Q 019584          172 LDLSYSNFDTFYLK------------LQ----KPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRL  235 (338)
Q Consensus       172 L~Ls~N~l~~~~l~------------~~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  235 (338)
                      |++++|.+......            +.    ....+..+..+++|+++++++|++++..+..+..+++|++|+|++|+|
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence            99988876542100            00    011233455667777777777777766666677777777777777777


Q ss_pred             cccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          236 QGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       236 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      + .+|+.+..+++|+.|+|++|++.|+|.
T Consensus       185 ~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         185 Y-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             c-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            7 677777777777777777777777663

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=7.9e-21  Score=170.99  Aligned_cols=169  Identities=23%  Similarity=0.241  Sum_probs=134.9

Q ss_pred             CCcEEEEEeCC-CCceeecCCCCccccCcCccEEEccCCCCCCC-----------------------CCchhhhcCCCCc
Q 019584           91 TGHVVELDLAS-SCLYGSINSTSSLFQLVHLQRLSLFDNNFNFS-----------------------EIPSAILNFSRLT  146 (338)
Q Consensus        91 ~~~l~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------------~~p~~l~~l~~L~  146 (338)
                      .+++++|+|++ |++.|.+|.  .+.++++|++|+|++|++.+.                       .+|..+.++++|+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~--~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             Ccccccccccccccccccccc--ccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            45788899986 788888887  888888888888888776421                       2567788899999


Q ss_pred             EEEcccccCccccchhhcCCCCC-CEEEccCCCCCcc-----------------------------------cccccC--
Q 019584          147 HLNLSQSYFSGQIPAELLELSNL-EVLDLSYSNFDTF-----------------------------------YLKLQK--  188 (338)
Q Consensus       147 ~L~Ls~n~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~-----------------------------------~l~~~~--  188 (338)
                      ++++++|.+.+.+|..+..+..+ +.+++++|++++.                                   .+....  
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999888887765 7788877765421                                   000000  


Q ss_pred             -CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCc
Q 019584          189 -PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       189 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  262 (338)
                       ...+..+..+++|++|++++|+++|.+|+.++++++|++|+|++|+++|.+|+ ++++++|+.+++++|+.-|.
T Consensus       233 l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             ccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence             12234577889999999999999999999999999999999999999999985 67889999999999985443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9e-19  Score=155.26  Aligned_cols=143  Identities=21%  Similarity=0.210  Sum_probs=95.7

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+.++++|+.|++++|.+... .+..+....+|+.+++++|.+++..+..+..+++|+.|++++|+++        ...+
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~--------~l~~  170 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--------SVPE  170 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------EECT
T ss_pred             hhcccccCCEEecCCcccccc-cccccchhcccchhhhccccccccChhHhccccchhhcccccCccc--------ccch
Confidence            455566677777777766543 4445556666777777777776444455666677777777777654        2234


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      ..+.++++|+++++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.|+|+
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            556677777777777777776667777777777777777777776666667777777777777777777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=4.8e-19  Score=148.13  Aligned_cols=175  Identities=22%  Similarity=0.222  Sum_probs=93.8

Q ss_pred             CCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEE
Q 019584           78 DCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHL  148 (338)
Q Consensus        78 ~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  148 (338)
                      ..|.|..|.|.+.         +.++++|+|++|.|+..++. ..|.++++|+.|++++|.+... .+..+..+++|++|
T Consensus         6 C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~-~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L   83 (192)
T d1w8aa_           6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQEL   83 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS-CSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEE
T ss_pred             CEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccc-cccCCCceEeeeeccccccccc-ccccccccccccee
Confidence            3467777777532         23556666666666543322 1455566666666666666543 45555566666666


Q ss_pred             EcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCee
Q 019584          149 NLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS  228 (338)
Q Consensus       149 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  228 (338)
                      +|++|+++...|..|.++++|++|+|++|+|+.        ..+..+..+++|++|++++|.+.......+ -...++.+
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~--------i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~  154 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISC--------VMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKK  154 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE--------ECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHH
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccc--------cCHHHhcCCcccccccccccccccccchHH-Hhhhhhhh
Confidence            666666664444455666666666666666431        223445556666666666666553221111 01223444


Q ss_pred             ecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584          229 SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS  266 (338)
Q Consensus       229 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  266 (338)
                      .+..|.++...|.   .+..++.++++.|.+.|..+..
T Consensus       155 ~l~~~~~~c~~p~---~l~~~~l~~L~~n~l~C~~~~~  189 (192)
T d1w8aa_         155 SLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             CCSGGGCBBCSST---TTTTSBGGGSCTTTCCCCCC--
T ss_pred             cccCCCeEeCCCh---hhcCCEeeecCHhhCcCCCCCC
Confidence            4555555544443   3345566777777777765543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=8.9e-18  Score=150.10  Aligned_cols=181  Identities=23%  Similarity=0.271  Sum_probs=136.1

Q ss_pred             CCCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCc
Q 019584           76 NKDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLT  146 (338)
Q Consensus        76 ~~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~  146 (338)
                      ....|.|..+.|.+.         +.++++|+|++|+|+...+.  .|.++++|++|++++|.+... .|..+.++++|+
T Consensus         6 ~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~--~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~   82 (305)
T d1xkua_           6 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLE   82 (305)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCC
T ss_pred             CCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChh--Hhhcccccccccccccccccc-chhhhhCCCccC
Confidence            344588999999642         36789999999999866555  788999999999999999854 577899999999


Q ss_pred             EEEcccccCccccchh------------------------------------------------hcCCCCCCEEEccCCC
Q 019584          147 HLNLSQSYFSGQIPAE------------------------------------------------LLELSNLEVLDLSYSN  178 (338)
Q Consensus       147 ~L~Ls~n~l~~~~p~~------------------------------------------------l~~l~~L~~L~Ls~N~  178 (338)
                      +|++++|+++ .+|..                                                +..+++|+++++++|.
T Consensus        83 ~L~l~~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          83 RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             EEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             EecccCCccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            9999999876 33321                                                2234556666666665


Q ss_pred             CCccccc---------cc----CCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccC
Q 019584          179 FDTFYLK---------LQ----KPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQ  245 (338)
Q Consensus       179 l~~~~l~---------~~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  245 (338)
                      ++.....         +.    ....+..+..++.+++|++++|.+.+..+..+.++++|++|+|++|+++ .+|..+..
T Consensus       162 l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         162 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             ccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            5432100         00    0123455677788888888888888777788888889999999999988 67888888


Q ss_pred             CCCCCeeeccCCCCCC
Q 019584          246 LPNLQFLGLCGGPLSK  261 (338)
Q Consensus       246 l~~L~~L~l~~N~l~~  261 (338)
                      +++|++|++++|+++.
T Consensus       241 l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         241 HKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CSSCCEEECCSSCCCC
T ss_pred             ccCCCEEECCCCccCc
Confidence            8999999999998885

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.8e-18  Score=151.16  Aligned_cols=169  Identities=22%  Similarity=0.143  Sum_probs=125.5

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCC------------------------CCchhhhcCCCCc
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFS------------------------EIPSAILNFSRLT  146 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~------------------------~~p~~l~~l~~L~  146 (338)
                      +..+++|+|++|.|+...+.  .+.++++|++|++++|.+...                        ..+..+.++++|+
T Consensus        31 p~~~~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             CTTCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCCEEECcCCcCCCCCHH--HhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCC
Confidence            34678999999999866655  788999999999999887422                        0134556667777


Q ss_pred             EEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCC
Q 019584          147 HLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR  226 (338)
Q Consensus       147 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  226 (338)
                      +|++++|.+....+..+....+|+.+++++|+++        ...+..+..+++|++|++++|++++..+..+..+++|+
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~--------~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             EEecCCcccccccccccchhcccchhhhcccccc--------ccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            7777777776545555666777777777777754        23345677778888888888888876677778888888


Q ss_pred             eeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584          227 FSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       227 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      .+++++|++++..|..+..+++|++|++++|.+.+..|..+..
T Consensus       181 ~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             hhhhhhccccccChhHhhhhhhccccccccccccccccccccc
Confidence            8888888888777888888888888888888888766554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.7e-17  Score=143.40  Aligned_cols=169  Identities=21%  Similarity=0.151  Sum_probs=123.9

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      ....++|.++++++. +|.  .+.  +++++|+|++|.++.. .+..|.++++|++|+|++|+++ .+| .++.+++|++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~--~lp--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~   81 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPP--DLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGT   81 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCS--CCC--TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCE
T ss_pred             CCCeEEEccCCCCCe-eCc--CcC--cCCCEEECcCCcCCCc-CHHHhhcccccccccccccccc-ccc-cccccccccc
Confidence            345567888998884 555  443  5799999999999853 4567999999999999999998 565 3578999999


Q ss_pred             EEccCCCCCcccccc-----------c----CCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584          172 LDLSYSNFDTFYLKL-----------Q----KPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~-----------~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      |++++|+++......           .    ....+..+..+.++++|++++|.++...+..+..+++|+.+++++|+++
T Consensus        82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            999999986421100           0    0112233445566666666667666655566677788888888888888


Q ss_pred             ccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584          237 GEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       237 ~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      +..+..+..+++|++|+|++|.++ .+|+....
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCC
Confidence            766677888888999999999888 67765443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=6.3e-18  Score=141.18  Aligned_cols=168  Identities=20%  Similarity=0.222  Sum_probs=130.8

Q ss_pred             ceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh
Q 019584           83 DGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE  162 (338)
Q Consensus        83 ~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  162 (338)
                      .+-.|..     +.++.++++++ .+|.  .+.  +++++|+|++|.|+....+..|.++++|++|+|++|.+....+..
T Consensus         4 ~~C~C~~-----~~v~Cs~~~L~-~iP~--~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~   73 (192)
T d1w8aa_           4 AMCHCEG-----TTVDCTGRGLK-EIPR--DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             TTSEEET-----TEEECTTSCCS-SCCS--CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred             CCCEEcC-----CEEEEeCCCcC-ccCC--CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc
Confidence            4556643     36899999988 4555  442  689999999999975434667889999999999999999888888


Q ss_pred             hcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh
Q 019584          163 LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE  242 (338)
Q Consensus       163 l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  242 (338)
                      +..+++|++|+|++|+++.        ..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.......
T Consensus        74 ~~~~~~L~~L~Ls~N~l~~--------l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~  145 (192)
T d1w8aa_          74 FEGASHIQELQLGENKIKE--------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCE--------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             cccccccceeeeccccccc--------cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH
Confidence            9999999999999999752        34567889999999999999999877888899999999999999987433211


Q ss_pred             ccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584          243 IFQLPNLQFLGLCGGPLSKKCNNSEAS  269 (338)
Q Consensus       243 l~~l~~L~~L~l~~N~l~~~~p~~~~~  269 (338)
                      . -...++.+.+..|.+.|..|.....
T Consensus       146 ~-~~~~l~~~~l~~~~~~c~~p~~l~~  171 (192)
T d1w8aa_         146 W-FAEWLRKKSLNGGAARCGAPSKVRD  171 (192)
T ss_dssp             H-HHHHHHHHCCSGGGCBBCSSTTTTT
T ss_pred             H-HhhhhhhhcccCCCeEeCCChhhcC
Confidence            1 1123566677888888887765443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6e-16  Score=129.67  Aligned_cols=147  Identities=22%  Similarity=0.316  Sum_probs=124.6

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|+++++++...  .  .+..+++|++|++++|.++.  ++. +.++++|++|++++|.+. .++ .+..++.|+.
T Consensus        40 ~~l~~L~l~~~~i~~l--~--~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~  110 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--D--GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTG  110 (199)
T ss_dssp             TTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSE
T ss_pred             cCCCEEECCCCCCCCc--c--ccccCCCcCcCccccccccC--ccc-ccCCcccccccccccccc-ccc-cccccccccc
Confidence            4789999999998742  2  57889999999999999975  443 899999999999999988 455 4889999999


Q ss_pred             EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584          172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF  251 (338)
Q Consensus       172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  251 (338)
                      |++++|.+.          ....+..+++|+.|++++|++.. + +.+..+++|+.|++.+|++++ ++ .+.++++|++
T Consensus       111 L~l~~~~~~----------~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~  176 (199)
T d2omxa2         111 LTLFNNQIT----------DIDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLER  176 (199)
T ss_dssp             EECCSSCCC----------CCGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCE
T ss_pred             ccccccccc----------cccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCE
Confidence            999999853          22347789999999999999975 3 458889999999999999994 43 4889999999


Q ss_pred             eeccCCCCCC
Q 019584          252 LGLCGGPLSK  261 (338)
Q Consensus       252 L~l~~N~l~~  261 (338)
                      |++++|+++.
T Consensus       177 L~ls~N~i~~  186 (199)
T d2omxa2         177 LDISSNKVSD  186 (199)
T ss_dssp             EECCSSCCCC
T ss_pred             EECCCCCCCC
Confidence            9999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.9e-15  Score=127.70  Aligned_cols=146  Identities=23%  Similarity=0.244  Sum_probs=110.2

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      .++.|++++|.+...  .  .+..+++|++|++++|.+++  ++ .+..+++|++|++++|+++ .+| .+..+++|+.|
T Consensus        47 ~L~~L~l~~~~i~~l--~--~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV--Q--GIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSL  117 (210)
T ss_dssp             TCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEE
T ss_pred             CccEEECcCCCCCCc--h--hHhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccc-ccc-ccccccccccc
Confidence            678888888888643  2  56778888889998888874  44 3678888889999888888 455 57788888888


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL  252 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  252 (338)
                      ++++|.+..          ...+..++.++.+++++|.+++  +..+..+++|+++++++|++++ ++ .+..+++|++|
T Consensus       118 ~l~~~~~~~----------~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L  183 (210)
T d1h6ta2         118 SLEHNGISD----------INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNL  183 (210)
T ss_dssp             ECTTSCCCC----------CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             ccccccccc----------cccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEE
Confidence            888887431          2346677888888888888875  2346677888888888888874 33 37778888888


Q ss_pred             eccCCCCCC
Q 019584          253 GLCGGPLSK  261 (338)
Q Consensus       253 ~l~~N~l~~  261 (338)
                      ++++|.++.
T Consensus       184 ~Ls~N~i~~  192 (210)
T d1h6ta2         184 YLSKNHISD  192 (210)
T ss_dssp             ECCSSCCCB
T ss_pred             ECCCCCCCC
Confidence            888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.7e-15  Score=127.95  Aligned_cols=143  Identities=27%  Similarity=0.324  Sum_probs=121.6

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .+++++|++++|.+++..    .+..+++|++|++++|+++.  ++ .+.++++|+.|++++|.+. .+ ..+..++.|+
T Consensus        67 l~~L~~L~L~~n~i~~l~----~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~  137 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIK----PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLE  137 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCC
T ss_pred             CCCCCEEeCCCccccCcc----ccccCccccccccccccccc--cc-ccccccccccccccccccc-cc-cccccccccc
Confidence            468999999999998632    46789999999999999974  55 5889999999999999987 44 3688899999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      .+++++|.+++          +..+..+++|+++++++|++++ ++ .++++++|+.|++++|+++ .+| .+..+++|+
T Consensus       138 ~l~~~~n~l~~----------~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~  203 (210)
T d1h6ta2         138 SLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLD  203 (210)
T ss_dssp             EEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCS
T ss_pred             ccccccccccc----------cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCC
Confidence            99999999642          2346788999999999999986 43 3889999999999999998 565 589999999


Q ss_pred             eeeccC
Q 019584          251 FLGLCG  256 (338)
Q Consensus       251 ~L~l~~  256 (338)
                      +|++++
T Consensus       204 ~L~Ls~  209 (210)
T d1h6ta2         204 VLELFS  209 (210)
T ss_dssp             EEEEEE
T ss_pred             EEEccC
Confidence            999975

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.1e-14  Score=124.11  Aligned_cols=158  Identities=23%  Similarity=0.267  Sum_probs=118.0

Q ss_pred             CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584           92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV  171 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (338)
                      .+++.|++.+|+|+..  .  .+..+++|++|++++|.++.  ++ .+.++++|+++++++|.++ .++ .+..+++|++
T Consensus        41 ~~L~~L~l~~~~i~~l--~--~l~~l~~L~~L~ls~n~i~~--~~-~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--E--GVQYLNNLIGLELKDNQITD--LA-PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKT  111 (227)
T ss_dssp             HTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CG-GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCE
T ss_pred             CCcCEEECCCCCCCcc--h--hHhcCCCCcEeecCCceeec--cc-ccccccccccccccccccc-ccc-cccccccccc
Confidence            4688888888888742  2  57788888888888888864  33 3788888888888888877 444 5778888888


Q ss_pred             EEccCCCCCcccc----------cccC--CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccC
Q 019584          172 LDLSYSNFDTFYL----------KLQK--PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEF  239 (338)
Q Consensus       172 L~Ls~N~l~~~~l----------~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  239 (338)
                      ++++++.......          ....  ......+..+++|++|++++|.+.+..  .++++++|++|++++|++++ +
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l  188 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-I  188 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-C
T ss_pred             cccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCC-C
Confidence            8888887553210          0000  111234677889999999999987543  38899999999999999984 4


Q ss_pred             chhccCCCCCCeeeccCCCCCCc
Q 019584          240 PQEIFQLPNLQFLGLCGGPLSKK  262 (338)
Q Consensus       240 p~~l~~l~~L~~L~l~~N~l~~~  262 (338)
                      + .+..+++|++|++++|+++..
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             h-hhcCCCCCCEEECcCCcCCCC
Confidence            4 378899999999999998863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=123.08  Aligned_cols=128  Identities=17%  Similarity=0.195  Sum_probs=97.4

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+.+...++.|+|++|+++.  ++..+..+++|++|+|++|.++ .++ .+..+++|++|++++|+++.        ..+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~--------l~~   80 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICR--------IGE   80 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCE--------ECS
T ss_pred             hccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccC--------CCc
Confidence            45677788889999998874  5666677888999999999888 554 57888899999999998652        123


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCcccCc----hhccCCCCCCeee
Q 019584          193 NLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGEFP----QEIFQLPNLQFLG  253 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~  253 (338)
                      ..+..+++|++|++++|+++... ...+..+++|++|++++|.++ ..|    ..+..+++|+.||
T Consensus        81 ~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          81 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            34567889999999999887531 146778899999999999887 344    2467788888887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.5e-15  Score=114.64  Aligned_cols=118  Identities=25%  Similarity=0.328  Sum_probs=76.2

Q ss_pred             cEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCC
Q 019584          121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTN  200 (338)
Q Consensus       121 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~  200 (338)
                      |+|++++|+++.  ++ .+.++++|++|++++|.++ .+|+.+..+++|++|++++|.++         .+| .+..+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~---------~l~-~~~~l~~   66 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---------NVD-GVANLPR   66 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC---------CCG-GGTTCSS
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc---------ccC-ccccccc
Confidence            457777777752  43 3667777777777777777 56666777777777777777754         233 3567777


Q ss_pred             CCEEEccCCCCCCCC-chhcccCCCCCeeecccccCccc--Cch-hccCCCCCCee
Q 019584          201 LKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGE--FPQ-EIFQLPNLQFL  252 (338)
Q Consensus       201 L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~--~p~-~l~~l~~L~~L  252 (338)
                      |++|++++|+++... ...++.+++|++|++++|.+++.  .++ ....+|+|+.+
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            777777777776432 24567777788888888877632  122 22345666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=2.4e-14  Score=119.75  Aligned_cols=139  Identities=24%  Similarity=0.362  Sum_probs=116.8

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      .+++++|++++|.+++..    .+.++++|++|++++|.+..  ++ .+.++++|++|++++|.+.. + ..+..+++|+
T Consensus        61 l~nL~~L~Ls~N~l~~~~----~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~  131 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIAD--IT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLN  131 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             CCCcCcCccccccccCcc----cccCCccccccccccccccc--cc-cccccccccccccccccccc-c-cccchhhhhH
Confidence            468999999999998643    47899999999999999864  44 48899999999999998874 3 3578899999


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      .|++++|++.         .+ +.+..+++|++|++.+|++++. + .++++++|++|++++|+++ .++ .+.++++|+
T Consensus       132 ~L~l~~n~l~---------~~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~  197 (199)
T d2omxa2         132 RLELSSNTIS---------DI-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVS-DIS-VLAKLTNLE  197 (199)
T ss_dssp             EEECCSSCCC---------CC-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCS
T ss_pred             Hhhhhhhhhc---------cc-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCC-CCc-cccCCCCCC
Confidence            9999999864         23 3578899999999999999864 3 4889999999999999998 454 578889888


Q ss_pred             ee
Q 019584          251 FL  252 (338)
Q Consensus       251 ~L  252 (338)
                      .|
T Consensus       198 ~L  199 (199)
T d2omxa2         198 SL  199 (199)
T ss_dssp             EE
T ss_pred             cC
Confidence            75

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.9e-14  Score=111.02  Aligned_cols=119  Identities=20%  Similarity=0.172  Sum_probs=96.4

Q ss_pred             EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584           95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL  174 (338)
Q Consensus        95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  174 (338)
                      +.|||++|+++..  +  .+..+++|++|++++|.++.  +|+.+..+++|++|++++|.++ .+| .+..+++|++|++
T Consensus         1 R~L~Ls~n~l~~l--~--~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTVL--C--HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSSC--C--CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCCC--c--ccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccc-ccC-ccccccccCeEEC
Confidence            3699999999732  2  58899999999999999973  7888999999999999999999 565 5899999999999


Q ss_pred             cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC---CchhcccCCCCCee
Q 019584          175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST---VPHTLANLSSLRFS  228 (338)
Q Consensus       175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L  228 (338)
                      ++|+++++       .....+..+++|++|++++|.++..   .......+++|+.|
T Consensus        73 ~~N~i~~~-------~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          73 CNNRLQQS-------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCCSS-------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCccCCC-------CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99997641       1224578899999999999998742   22334456777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.6e-14  Score=121.87  Aligned_cols=181  Identities=14%  Similarity=0.096  Sum_probs=129.9

Q ss_pred             cccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEc
Q 019584           80 CSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNL  150 (338)
Q Consensus        80 c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L  150 (338)
                      |....+.|...         ..++++|++++|.|+...+.  .|.++++|++|++++|.+.....+..+.++++++++++
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~--~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTT--TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChh--Hhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            67778888532         24799999999999865555  78999999999999999865323456788999999998


Q ss_pred             cc-ccCccccchhhcCCCCCCEEEccCCCCCcccccc-------------cC---CCc-chhhcCC-CCCCEEEccCCCC
Q 019584          151 SQ-SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKL-------------QK---PGL-ANLAENL-TNLKALDLINVHI  211 (338)
Q Consensus       151 s~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~-------------~~---~~~-~~~~~~l-~~L~~L~Ls~N~l  211 (338)
                      .. |.+....+..+..+++|+++++++|+++......             ..   ..+ +..+..+ ..++.|++++|++
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            65 6777667777899999999999999876431100             00   011 1222333 3678889999988


Q ss_pred             CCCCchhcccCCCCCee-ecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          212 SSTVPHTLANLSSLRFS-SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       212 ~~~~p~~l~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      +. ++.......++..+ ++++|+++...+..+..+++|++|++++|+++. +|
T Consensus       166 ~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~  217 (242)
T d1xwdc1         166 QE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LP  217 (242)
T ss_dssp             CE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC-CC
T ss_pred             cc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc-cC
Confidence            85 44444455665554 567888884334457889999999999999984 44

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=8.9e-14  Score=126.92  Aligned_cols=151  Identities=23%  Similarity=0.320  Sum_probs=118.9

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE  170 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (338)
                      ..+++.|++++|.+++.  +  .+..+++|+.|++++|.+++  ++ .+..+++|++|++++|.+++ ++ .+..++.++
T Consensus       218 ~~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~l~~n~l~~--~~-~~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~l~  288 (384)
T d2omza2         218 LTNLDELSLNGNQLKDI--G--TLASLTNLTDLDLANNQISN--LA-PLSGLTKLTELKLGANQISN-IS-PLAGLTALT  288 (384)
T ss_dssp             CTTCCEEECCSSCCCCC--G--GGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             cCCCCEEECCCCCCCCc--c--hhhcccccchhccccCccCC--CC-cccccccCCEeeccCcccCC-CC-ccccccccc
Confidence            46789999999998752  2  67889999999999999875  33 38889999999999999984 33 367788889


Q ss_pred             EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584          171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ  250 (338)
Q Consensus       171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  250 (338)
                      .++++.|.+++          ...+..++++++|++++|++++..  .+..+++|++|++++|+++ .++ .+..+++|+
T Consensus       289 ~l~~~~n~l~~----------~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~  354 (384)
T d2omza2         289 NLELNENQLED----------ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNIN  354 (384)
T ss_dssp             EEECCSSCCSC----------CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCC
T ss_pred             ccccccccccc----------ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCC
Confidence            99998888542          234677888888888888888643  3778888888888888887 344 578888888


Q ss_pred             eeeccCCCCCCcCC
Q 019584          251 FLGLCGGPLSKKCN  264 (338)
Q Consensus       251 ~L~l~~N~l~~~~p  264 (338)
                      +|++++|++++..|
T Consensus       355 ~L~l~~N~l~~l~~  368 (384)
T d2omza2         355 WLSAGHNQISDLTP  368 (384)
T ss_dssp             EEECCSSCCCBCGG
T ss_pred             EEECCCCcCCCChh
Confidence            88888888887543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=8.5e-14  Score=127.07  Aligned_cols=146  Identities=23%  Similarity=0.277  Sum_probs=71.8

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      ++..+++++|.+++..    .....++|+.|++++|.++.  + +.+..+++|+.|++++|.+++. + .+..+++|++|
T Consensus       198 ~~~~l~l~~n~i~~~~----~~~~~~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L  268 (384)
T d2omza2         198 NLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISNL-A-PLSGLTKLTEL  268 (384)
T ss_dssp             TCSEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             ccceeeccCCccCCCC----cccccCCCCEEECCCCCCCC--c-chhhcccccchhccccCccCCC-C-cccccccCCEe
Confidence            4455555555554332    23344555555555555542  2 2345555555555555555532 2 24455555555


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL  252 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  252 (338)
                      ++++|++++         ++ .+..++.++.+++..|.+.+.  ..+..+++++.|++++|++++. + .+..+++|++|
T Consensus       269 ~l~~~~l~~---------~~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L  334 (384)
T d2omza2         269 KLGANQISN---------IS-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRL  334 (384)
T ss_dssp             ECCSSCCCC---------CG-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEE
T ss_pred             eccCcccCC---------CC-ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEE
Confidence            555555321         11 234455555555555555431  2344555555555555555532 2 24455555555


Q ss_pred             eccCCCCCC
Q 019584          253 GLCGGPLSK  261 (338)
Q Consensus       253 ~l~~N~l~~  261 (338)
                      ++++|.+++
T Consensus       335 ~L~~n~l~~  343 (384)
T d2omza2         335 FFANNKVSD  343 (384)
T ss_dssp             ECCSSCCCC
T ss_pred             ECCCCCCCC
Confidence            555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.3e-13  Score=117.32  Aligned_cols=145  Identities=21%  Similarity=0.316  Sum_probs=112.6

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccc----------
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIP----------  160 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------  160 (338)
                      .++++.|++++|.+.+..    .+..+++++++++++|.++.  ++ .+.++++|++++++++...+..+          
T Consensus        62 l~~L~~L~ls~n~i~~~~----~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLA----PLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             CCCCcEeecCCceeeccc----cccccccccccccccccccc--cc-cccccccccccccccccccccchhccccchhhh
Confidence            468999999999987543    47788999999999998863  43 57788888888888887653211          


Q ss_pred             ----------hhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeec
Q 019584          161 ----------AELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL  230 (338)
Q Consensus       161 ----------~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  230 (338)
                                ..+..+++|++|++++|.+++          ...+.++++|++|++++|++++ ++ .++++++|++|+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----------~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~L  202 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSD----------LTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHL  202 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----------CGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEEC
T ss_pred             hchhhhhchhhhhcccccccccccccccccc----------chhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEEC
Confidence                      224456777888887777431          2237889999999999999986 44 3889999999999


Q ss_pred             ccccCcccCchhccCCCCCCeeeccC
Q 019584          231 SGCRLQGEFPQEIFQLPNLQFLGLCG  256 (338)
Q Consensus       231 s~N~l~~~~p~~l~~l~~L~~L~l~~  256 (338)
                      ++|++++ ++ .+..+++|+.|++++
T Consensus       203 s~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         203 KNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             cCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            9999994 55 388999999999974

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=1.3e-13  Score=122.60  Aligned_cols=135  Identities=21%  Similarity=0.254  Sum_probs=113.9

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+..+++|+.+++++|.++.  +|..  .+++|++|++++|..++..+..+..++.+++|++++|.+++        ..+
T Consensus       145 ~~~~l~~L~~l~l~~n~l~~--l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~--------~~~  212 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNITT--IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--------VDN  212 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCCS--CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--------ECT
T ss_pred             ccccccccCccccccCCccc--cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccc--------ccc
Confidence            56678899999999999863  5543  36899999999999998888899999999999999999753        345


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCch-h------ccCCCCCCeeeccCCCCCC
Q 019584          193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQ-E------IFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~------l~~l~~L~~L~l~~N~l~~  261 (338)
                      ..+.++++|++|+|++|+++. +|..+..+++|++|+|++|+|+ .++. .      ...+.+|+.|++++|++..
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccccccccceeeecccccccc-cccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            678899999999999999984 7889999999999999999999 4432 2      3356789999999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.1e-14  Score=115.16  Aligned_cols=111  Identities=21%  Similarity=0.175  Sum_probs=94.4

Q ss_pred             hhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchh
Q 019584          139 ILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHT  218 (338)
Q Consensus       139 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  218 (338)
                      +.+..++++|+|++|+|+ .++..+..+++|++|++++|+++.         + +.+..+++|++|++++|+++...+..
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~---------l-~~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK---------L-DGFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE---------E-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc---------c-CCcccCcchhhhhcccccccCCCccc
Confidence            556778999999999999 677777889999999999999753         3 23678999999999999998755555


Q ss_pred             cccCCCCCeeecccccCcccCc--hhccCCCCCCeeeccCCCCCC
Q 019584          219 LANLSSLRFSSLSGCRLQGEFP--QEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       219 l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      +..+++|+.|++++|+++. ++  ..+..+++|+++++++|+++.
T Consensus        83 ~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             cccccccccceeccccccc-cccccccccccccchhhcCCCcccc
Confidence            6789999999999999984 44  467889999999999999865

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-13  Score=108.79  Aligned_cols=108  Identities=18%  Similarity=0.047  Sum_probs=61.3

Q ss_pred             cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccc-cCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhc
Q 019584          118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS-YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE  196 (338)
Q Consensus       118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~  196 (338)
                      ...+.++.+++.+..  .|..+..+++|++|++++| .++..-+..|.++++|+.|++++|+|+.        ..+..|.
T Consensus         8 ~~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~--------i~~~~f~   77 (156)
T d2ifga3           8 HGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--------VAPDAFH   77 (156)
T ss_dssp             SSSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--------ECTTGGG
T ss_pred             CCCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC--------ccccccc
Confidence            344556666666542  5556666667777777544 3553334456666667777777666542        2244556


Q ss_pred             CCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584          197 NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       197 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      .+++|++|+|++|+++. +|.......+|+.|+|++|.+.
T Consensus        78 ~l~~L~~L~Ls~N~l~~-l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          78 FTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCEEECCSSCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccceeccCCCCcc-cChhhhccccccccccCCCccc
Confidence            66666666666666663 3333223335666666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=1.3e-14  Score=121.26  Aligned_cols=127  Identities=28%  Similarity=0.339  Sum_probs=91.4

Q ss_pred             ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584          113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA  192 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~  192 (338)
                      .+..+++|++|+|++|.++.  ++ .+.++++|++|++++|.++ .+|.....+++|++|++++|+++         .+ 
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~---------~l-  108 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA---------SL-  108 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC---------CH-
T ss_pred             HHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc---------cc-
Confidence            56778888888888888863  44 4778888888888888887 56655555667888888888864         22 


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCcccCchh----------ccCCCCCCeee
Q 019584          193 NLAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQGEFPQE----------IFQLPNLQFLG  253 (338)
Q Consensus       193 ~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  253 (338)
                      +.+..+++|++|++++|+++.... ..+..+++|++|++++|.++...+..          +..+++|+.||
T Consensus       109 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            236677888888888888875321 45778888888888888876443321          45677888776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=8.6e-15  Score=122.45  Aligned_cols=116  Identities=23%  Similarity=0.346  Sum_probs=81.8

Q ss_pred             CchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584          135 IPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST  214 (338)
Q Consensus       135 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  214 (338)
                      ++..+..+++|++|+|++|+++ .++ .+..+++|++|++++|.++         .++.....+++|++|++++|.++. 
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~---------~i~~~~~~~~~L~~L~l~~N~i~~-  107 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK---------KIENLDAVADTLEELWISYNQIAS-  107 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC---------SCSSHHHHHHHCCEEECSEEECCC-
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc---------cccccccccccccccccccccccc-
Confidence            5667778888888888888877 454 4777788888888888753         344444445678888888888774 


Q ss_pred             CchhcccCCCCCeeecccccCcccCc--hhccCCCCCCeeeccCCCCCCcCC
Q 019584          215 VPHTLANLSSLRFSSLSGCRLQGEFP--QEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       215 ~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      + +.+..+++|++|++++|+++. ++  ..+..+++|+.|++++|++....+
T Consensus       108 l-~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         108 L-SGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             H-HHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             c-ccccccccccccccccchhcc-ccccccccCCCccceeecCCCccccCcc
Confidence            3 346677788888888888773 33  356777888888888887765444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.1e-13  Score=119.13  Aligned_cols=162  Identities=31%  Similarity=0.343  Sum_probs=92.7

Q ss_pred             cEEEEEeCCCCceeec-CCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccc-cCccc-cchhhcCCCCC
Q 019584           93 HVVELDLASSCLYGSI-NSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS-YFSGQ-IPAELLELSNL  169 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L  169 (338)
                      ++++||++++.+.+.. ..  .+..+++|++|+++++.++.. .+..+.++++|++|+++++ .++.. +..-...+++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~--l~~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCCEEECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCEEECCCCccCHHHHHH--HHHhCCCcccccccccCCCcH-HHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            5667777776654332 22  345566777777777766543 4555666677777777664 34421 11122445667


Q ss_pred             CEEEccCC-CCCcccc--------------cc-------cCCCcchhhcCCCCCCEEEccCC-CCCCCCchhcccCCCCC
Q 019584          170 EVLDLSYS-NFDTFYL--------------KL-------QKPGLANLAENLTNLKALDLINV-HISSTVPHTLANLSSLR  226 (338)
Q Consensus       170 ~~L~Ls~N-~l~~~~l--------------~~-------~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~  226 (338)
                      ++|+++++ .+++..+              .+       ....+.....++++|++|++++| .+++..+..+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            77777664 2221000              00       00112233455677777777765 35655666677777777


Q ss_pred             eeecccc-cCcccCchhccCCCCCCeeeccCC
Q 019584          227 FSSLSGC-RLQGEFPQEIFQLPNLQFLGLCGG  257 (338)
Q Consensus       227 ~L~Ls~N-~l~~~~p~~l~~l~~L~~L~l~~N  257 (338)
                      +|++++| .+++.....+.++++|+.|+++++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7777774 566555556667777777777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.7e-12  Score=101.35  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             ccccCcCccEEEccCCC-CCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCc
Q 019584          113 SLFQLVHLQRLSLFDNN-FNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGL  191 (338)
Q Consensus       113 ~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~  191 (338)
                      .+..+++|+.|++.+|+ ++.. .+..|.++++|+.|+|++|+++...+..|..+++|++|+|++|+++         .+
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~---------~l   95 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE---------SL   95 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS---------CC
T ss_pred             cccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc---------cc
Confidence            45556666666665443 5432 3445666667777777777666444555666667777777777654         22


Q ss_pred             chhhcCCCCCCEEEccCCCCC
Q 019584          192 ANLAENLTNLKALDLINVHIS  212 (338)
Q Consensus       192 ~~~~~~l~~L~~L~Ls~N~l~  212 (338)
                      |.......+|++|++++|.+.
T Consensus        96 ~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          96 SWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSTTTCSCCCCEEECCSSCCC
T ss_pred             ChhhhccccccccccCCCccc
Confidence            222223335666777666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.24  E-value=6.2e-11  Score=106.05  Aligned_cols=58  Identities=24%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584          199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN  265 (338)
Q Consensus       199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  265 (338)
                      ++|++|++++|+++ .+|.   .+++|+.|+|++|+++ .+|+.   +++|++|++++|+++ .+|+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            45666666666665 3443   2455666666666666 45532   345666777777665 3443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.5e-12  Score=110.97  Aligned_cols=141  Identities=26%  Similarity=0.324  Sum_probs=96.9

Q ss_pred             ccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCC-CCCcccccccCCCcch
Q 019584          115 FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYS-NFDTFYLKLQKPGLAN  193 (338)
Q Consensus       115 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~l~~~~~~~~~  193 (338)
                      .....|++||++++.++...+...+.++++|++|++++|.+++..+..+..+++|++|+++++ .+++.       .+..
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-------~l~~  115 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-------ALQT  115 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-------HHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-------ccch
Confidence            356789999999998865435566788999999999999998888888999999999999995 44421       2223


Q ss_pred             hhcCCCCCCEEEccCCC-CCCC-----------------------------CchhcccCCCCCeeecccc-cCcccCchh
Q 019584          194 LAENLTNLKALDLINVH-ISST-----------------------------VPHTLANLSSLRFSSLSGC-RLQGEFPQE  242 (338)
Q Consensus       194 ~~~~l~~L~~L~Ls~N~-l~~~-----------------------------~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~  242 (338)
                      ....+++|++|+++++. +++.                             +.....++++|++|++++| .+++.....
T Consensus       116 l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~  195 (284)
T d2astb2         116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  195 (284)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh
Confidence            34456677777776642 3210                             1111234567777777765 366666666


Q ss_pred             ccCCCCCCeeeccCC-CCCCc
Q 019584          243 IFQLPNLQFLGLCGG-PLSKK  262 (338)
Q Consensus       243 l~~l~~L~~L~l~~N-~l~~~  262 (338)
                      +.++++|++|+++++ .++..
T Consensus       196 l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         196 FFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             GGGCTTCCEEECTTCTTCCGG
T ss_pred             hcccCcCCEEECCCCCCCChH
Confidence            677777777777763 45443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.2e-10  Score=99.22  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=100.2

Q ss_pred             CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccC-CCCCCCCCchhhhcCCCCcEEEcccccCccccch-hhcCCC-
Q 019584           91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPA-ELLELS-  167 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~-  167 (338)
                      .+++++|++++|.+...++. ..+..++.++.+++.. |.+... .+..+.++++|+++++++|.+....+. .+..+. 
T Consensus        52 l~~L~~L~ls~n~~~~~i~~-~~f~~l~~l~~l~~~~~n~l~~~-~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~  129 (242)
T d1xwdc1          52 FGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK  129 (242)
T ss_dssp             CTTCCEEEEESCTTCCEECS-SSEESCTTCCEEEEECCTTCCEE-CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSC
T ss_pred             cchhhhhhhccccccceeec-ccccccccccccccccccccccc-ccccccccccccccccchhhhcccccccccccccc
Confidence            45788999998887655432 2567778888877654 455433 456677788888888888877632111 112222 


Q ss_pred             ------------------------CCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEE-EccCCCCCCCCchhcccC
Q 019584          168 ------------------------NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKAL-DLINVHISSTVPHTLANL  222 (338)
Q Consensus       168 ------------------------~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~p~~l~~l  222 (338)
                                              .++.|++++|+++         .++......++++++ ++++|+++...+..+.++
T Consensus       130 l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~---------~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l  200 (242)
T d1xwdc1         130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ---------EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA  200 (242)
T ss_dssp             EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC---------EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTS
T ss_pred             cccccccccccccccccccccccccceeeeccccccc---------ccccccccchhhhccccccccccccccHHHhcCC
Confidence                                    3444455544432         233333445665555 567788886545568899


Q ss_pred             CCCCeeecccccCcccCchhccCCCCCCeeeccC
Q 019584          223 SSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG  256 (338)
Q Consensus       223 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  256 (338)
                      ++|++|++++|+++...+..+.++++|+.+++.+
T Consensus       201 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            9999999999999944445677777777777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=1.4e-11  Score=111.01  Aligned_cols=12  Identities=8%  Similarity=0.301  Sum_probs=5.1

Q ss_pred             cEEEEEeCCCCc
Q 019584           93 HVVELDLASSCL  104 (338)
Q Consensus        93 ~l~~L~Ls~n~l  104 (338)
                      +++.|+|++|.+
T Consensus        94 ~L~~L~L~~n~i  105 (344)
T d2ca6a1          94 KLHTVRLSDNAF  105 (344)
T ss_dssp             TCCEEECCSCCC
T ss_pred             Cccccccccccc
Confidence            344444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=1.5e-10  Score=104.15  Aligned_cols=167  Identities=17%  Similarity=0.167  Sum_probs=102.8

Q ss_pred             CCcEEEEEeCCCCceeecCC--------CCccccCcCccEEEccCCCCCCCC---CchhhhcCCCCcEEEcccccCcccc
Q 019584           91 TGHVVELDLASSCLYGSINS--------TSSLFQLVHLQRLSLFDNNFNFSE---IPSAILNFSRLTHLNLSQSYFSGQI  159 (338)
Q Consensus        91 ~~~l~~L~Ls~n~l~~~~~~--------~~~l~~l~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~  159 (338)
                      .++++.|+++++........        ...+...++|+.|+|++|.++...   +...+...++|++|++++|.+....
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence            35677777776543211100        012345677888888888775431   2334456778888888887764211


Q ss_pred             chh-------------hcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC-----Cchhccc
Q 019584          160 PAE-------------LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST-----VPHTLAN  221 (338)
Q Consensus       160 p~~-------------l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~l~~  221 (338)
                      ...             ....+.|+.+++++|.++.....    .+...+...+.|++|++++|.++..     +...+..
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~----~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~  213 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  213 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH----HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             cccccccccccccccccccCcccceeecccccccccccc----cccchhhhhhhhcccccccccccccccccchhhhhcc
Confidence            111             12456777777777775432111    2344556678888888888887642     2334566


Q ss_pred             CCCCCeeecccccCccc----CchhccCCCCCCeeeccCCCCCC
Q 019584          222 LSSLRFSSLSGCRLQGE----FPQEIFQLPNLQFLGLCGGPLSK  261 (338)
Q Consensus       222 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~~  261 (338)
                      +++|+.|+|++|.++..    +...+..+++|++|++++|.+++
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            78888888888887643    34456677888888888888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.91  E-value=8.9e-09  Score=91.58  Aligned_cols=138  Identities=24%  Similarity=0.249  Sum_probs=97.9

Q ss_pred             cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584           93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL  172 (338)
Q Consensus        93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (338)
                      ++++|||++++++ .+|+  .   .++|++|++++|+++.  +|..   +.+|+.|++++|+++ .++..   .+.|++|
T Consensus        39 ~l~~LdLs~~~L~-~lp~--~---~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE--L---PPHLESLVASCNSLTE--LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYL  103 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS--C---CTTCSEEECCSSCCSS--CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEE
T ss_pred             CCCEEEeCCCCCC-CCCC--C---CCCCCEEECCCCCCcc--cccc---hhhhhhhhhhhcccc-hhhhh---ccccccc
Confidence            6789999999987 3554  2   4689999999999973  7754   468999999999988 45431   2469999


Q ss_pred             EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584          173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL  252 (338)
Q Consensus       173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  252 (338)
                      ++++|.++         .+|. +..+++|++|++++|.+... +.   ....+..+.+..+...  .+..+..++.++.+
T Consensus       104 ~L~~n~l~---------~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L  167 (353)
T d1jl5a_         104 GVSNNQLE---------KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAI  167 (353)
T ss_dssp             ECCSSCCS---------SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEE
T ss_pred             cccccccc---------cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceec
Confidence            99999864         3443 46789999999999988753 22   2345666666665554  23345566677777


Q ss_pred             eccCCCCCC
Q 019584          253 GLCGGPLSK  261 (338)
Q Consensus       253 ~l~~N~l~~  261 (338)
                      ++++|.+..
T Consensus       168 ~l~~n~~~~  176 (353)
T d1jl5a_         168 YADNNSLKK  176 (353)
T ss_dssp             ECCSSCCSS
T ss_pred             ccccccccc
Confidence            777766554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5e-10  Score=103.39  Aligned_cols=38  Identities=32%  Similarity=0.283  Sum_probs=17.3

Q ss_pred             CCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccCc
Q 019584          199 TNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRLQ  236 (338)
Q Consensus       199 ~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  236 (338)
                      +.|++|++++|.+++.    +++.+..+++|++|+|++|+++
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            3455555555554421    2223334445555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.7e-10  Score=89.42  Aligned_cols=105  Identities=20%  Similarity=0.147  Sum_probs=63.0

Q ss_pred             CCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhccc
Q 019584          142 FSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLAN  221 (338)
Q Consensus       142 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  221 (338)
                      +..+..++..++... .++.....+++|++|+|++|+++..      ..++..+..+++|+.|++++|.++...+-....
T Consensus        41 ~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l------~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~  113 (162)
T d1koha1          41 QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSERELDKIK  113 (162)
T ss_dssp             TTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCC------SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT
T ss_pred             ccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCC------chhHHHHhhCCcccccccccCccccchhhhhhh
Confidence            334444444444333 3444445677788888888876542      134455667788888888888877533322333


Q ss_pred             CCCCCeeecccccCcccCc-------hhccCCCCCCeee
Q 019584          222 LSSLRFSSLSGCRLQGEFP-------QEIFQLPNLQFLG  253 (338)
Q Consensus       222 l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~  253 (338)
                      ..+|+.|++++|.++....       ..+..+|+|+.||
T Consensus       114 ~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         114 GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            4567888888888775433       2245678888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9e-10  Score=101.59  Aligned_cols=163  Identities=18%  Similarity=0.166  Sum_probs=104.2

Q ss_pred             CcEEEEEeCCCCceeec-CCCCccccCcCccEEEccCCCCCCC---CCchhhhcCCCCcEEEcccccCccc----cchhh
Q 019584           92 GHVVELDLASSCLYGSI-NSTSSLFQLVHLQRLSLFDNNFNFS---EIPSAILNFSRLTHLNLSQSYFSGQ----IPAEL  163 (338)
Q Consensus        92 ~~l~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l  163 (338)
                      .+++.||++++++++.. ..  .+..+++++.|+|++|.++..   .+...+..+++|++|||++|.++..    +...+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~--l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAE--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHH--HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHH--HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            36899999999997632 12  355688999999999988632   1345678899999999999998632    22223


Q ss_pred             c-CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhc----c-cCCCCCeeecccccCcc
Q 019584          164 L-ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL----A-NLSSLRFSSLSGCRLQG  237 (338)
Q Consensus       164 ~-~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~Ls~N~l~~  237 (338)
                      . ...+|++|++++|++++....    .++..+..+++|++|++++|.++......+    . ..............+..
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~----~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  155 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCG----VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  155 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHH----HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             hcCCCCCCEEECCCCCccccccc----cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccch
Confidence            2 235799999999997643221    355677888999999999998864322222    1 11233444444443332


Q ss_pred             c----CchhccCCCCCCeeeccCCCCC
Q 019584          238 E----FPQEIFQLPNLQFLGLCGGPLS  260 (338)
Q Consensus       238 ~----~p~~l~~l~~L~~L~l~~N~l~  260 (338)
                      .    ....+.....++.++++++...
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~ls~~~~~  182 (460)
T d1z7xw1         156 ASCEPLASVLRAKPDFKELTVSNNDIN  182 (460)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             hhhcccccccccccccccccccccccc
Confidence            1    1122344566777777665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.9e-08  Score=80.32  Aligned_cols=108  Identities=23%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             CCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC--Cchhccc
Q 019584          144 RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST--VPHTLAN  221 (338)
Q Consensus       144 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~  221 (338)
                      ..+.|++++....    ..+..+..+..++..++..         ..++.....+++|++|++++|+++..  ++..+..
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~---------~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~   89 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMA---------ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK   89 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHH---------HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHH
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHh---------hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhh
Confidence            3455666654422    1233444444444444421         23444556799999999999999864  3456778


Q ss_pred             CCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584          222 LSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN  264 (338)
Q Consensus       222 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  264 (338)
                      +++|+.|+|++|.++...+-......+|+.+++++|++++...
T Consensus        90 l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          90 APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             CCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            9999999999999994333233455679999999999987654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.26  E-value=3.4e-07  Score=73.07  Aligned_cols=64  Identities=13%  Similarity=0.162  Sum_probs=27.5

Q ss_pred             CcCccEEEccCC-CCCCCC---CchhhhcCCCCcEEEcccccCccc----cchhhcCCCCCCEEEccCCCCC
Q 019584          117 LVHLQRLSLFDN-NFNFSE---IPSAILNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNFD  180 (338)
Q Consensus       117 l~~L~~L~L~~n-~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  180 (338)
                      .++|+.|+|+++ .++...   +...+...++|++|+|++|.+...    +...+...+.|++|++++|.++
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            355566666543 232110   112233444555555555555421    1122233445555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.20  E-value=6e-07  Score=71.63  Aligned_cols=112  Identities=14%  Similarity=0.127  Sum_probs=57.4

Q ss_pred             CCCCcEEEcccc-cCccc----cchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC--
Q 019584          142 FSRLTHLNLSQS-YFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST--  214 (338)
Q Consensus       142 l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--  214 (338)
                      .++|++|+|+++ .++..    +-..+...+.|++|++++|.+++...    ..+...+...+.|++|++++|.+++.  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~----~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA----RGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH----TTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHH----HHHhhhhhhcccccceeeehhhcchHHH
Confidence            456666666653 34321    22234455666666666666542111    12334455556666666666666542  


Q ss_pred             --CchhcccCCCCCeeecccccCcc-------cCchhccCCCCCCeeeccCC
Q 019584          215 --VPHTLANLSSLRFSSLSGCRLQG-------EFPQEIFQLPNLQFLGLCGG  257 (338)
Q Consensus       215 --~p~~l~~l~~L~~L~Ls~N~l~~-------~~p~~l~~l~~L~~L~l~~N  257 (338)
                        +...+...++|++|++++|.+..       .+...+...+.|+.|+++.+
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence              12234445566666666665431       12333444566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.88  E-value=2.9e-06  Score=67.32  Aligned_cols=40  Identities=8%  Similarity=0.066  Sum_probs=17.6

Q ss_pred             hcCCCCcEEEcccccCccc----cchhhcCCCCCCEEEccCCCC
Q 019584          140 LNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNF  179 (338)
Q Consensus       140 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l  179 (338)
                      ...++|++|++++|.++..    +...+...++++.+++++|.+
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3445555555555554422    112223334455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.79  E-value=3.4e-06  Score=66.91  Aligned_cols=115  Identities=16%  Similarity=0.087  Sum_probs=68.5

Q ss_pred             hcCCCCcEEEccc-ccCccc----cchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584          140 LNFSRLTHLNLSQ-SYFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST  214 (338)
Q Consensus       140 ~~l~~L~~L~Ls~-n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  214 (338)
                      .+.+.|++|+|++ +.++..    +-..+...+.|++|++++|.++.....    .+...+...+.++.+++++|.++..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~----~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF----ALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH----HHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHH----HHHHHHhhcccchhhhhccccccch
Confidence            3456777777776 345422    233445677788888888876532111    2334556667788888888777643


Q ss_pred             ----CchhcccCCCCCeeec--ccccCccc----CchhccCCCCCCeeeccCCC
Q 019584          215 ----VPHTLANLSSLRFSSL--SGCRLQGE----FPQEIFQLPNLQFLGLCGGP  258 (338)
Q Consensus       215 ----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~l~~N~  258 (338)
                          +...+...++|+.++|  ++|.+...    +.+.+...++|++|+++.+.
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                2344556677776444  45666542    33445567778888776654