Citrus Sinensis ID: 019595

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSHVFY
cEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccHHHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccEEEEEEEEccEEEEEEcccEEEEEEcccccccHHHHHHHHccccEEEEEEEEcc
cEEEEEEEcccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccEccccccccccccccccccccccccccccccccccccHcccccccEcccccccHHccccccccHHHcccccccccccEEEccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccEEEHHccccHHHHHHccccccccccccccHcccccccEEEEEEEccEEEEEEcccHHHHEcccccccccccHHHEEccccccEEccEEEc
MMIIVILFGgcqkakkpyptvsnstkedymypfplesddvidggydssddqctdilrnnmppevnlKNVLSGIFAIItgqnktpsdcmnqqesssnvsffgsgkngdtylhssvyipsappllepdgvryIAYKEVleaeppewlpdssttvcmqctapftaltrgrhhcrfcggvfcrictkgrcllpvrfrernpqrvcdacydrldplQGVLINTISNAVQVAKHDvvdwtctrgwlnlpvglSMEYEIYKASNTLRSYCQvaesnpersiplAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVArrsdgswsapsaILSVglgwgaqvnshvfy
MMIIVIlfggcqkakkpyptvsnstkedymYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLlpvrfrernpqRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAIlsvglgwgaQVNSHVFY
MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSHVFY
**IIVILFGGCQKAKKPY*********DYMYPFPLESDDVIDGGY*****QCTDILRNNMPPEVNLKNVLSGIFAIITG**************************GDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSH***
*MII**************************************************************************************************************************************AEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP***********************TCTRGWLNLPVGLSMEYEIY************************VLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSHVF*
MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNK*************NVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSHVFY
MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESD*VIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNK***********************GDTYL*S***IPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAV*VAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSHVFY
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SSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMIIVILFGGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSHVFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query338 2.2.26 [Sep-21-2011]
Q9URW6 430 SH3 domain-containing pro yes no 0.286 0.225 0.448 6e-15
Q7Z6J4655 FYVE, RhoGEF and PH domai yes no 0.505 0.261 0.290 7e-13
Q96HL8 342 SH3 domain-containing YSC no no 0.236 0.233 0.469 1e-12
Q5RAQ2 342 SH3 domain-containing YSC no no 0.236 0.233 0.469 1e-12
B4K9821051 Lateral signaling target N/A no 0.192 0.061 0.492 2e-12
B4NFJ7993 Lateral signaling target N/A no 0.192 0.065 0.492 2e-12
B4M1401052 Lateral signaling target N/A no 0.192 0.061 0.492 2e-12
B4IC49975 Lateral signaling target N/A no 0.192 0.066 0.492 3e-12
Q9VB70989 Lateral signaling target yes no 0.192 0.065 0.492 3e-12
B3P851981 Lateral signaling target N/A no 0.192 0.066 0.492 3e-12
>sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1 Back     alignment and function desciption
 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 240 LNLPVGLSMEYEIYKASNTLRSYCQVAES-NPERSIPLAVLNGAKGLAILTVAKAGVLVS 298
           L+ P+  S++ E  KA   L S+    ++   +  IP +VL  AKGL I+TV KAG L S
Sbjct: 3   LHNPLPSSLKSECKKAGKILTSFVDPRQTLGAQEVIPPSVLTNAKGLVIMTVLKAGFLFS 62

Query: 299 YKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSHV 336
            ++G+GL+VAR  DG+WSAPSA+++ G+G GAQ+ S +
Sbjct: 63  GRIGSGLIVARLDDGTWSAPSAVMTGGMGVGAQIGSEL 100

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q7Z6J4|FGD2_HUMAN FYVE, RhoGEF and PH domain-containing protein 2 OS=Homo sapiens GN=FGD2 PE=2 SV=1 Back     alignment and function description
>sp|Q96HL8|SH3Y1_HUMAN SH3 domain-containing YSC84-like protein 1 OS=Homo sapiens GN=SH3YL1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAQ2|SH3Y1_PONAB SH3 domain-containing YSC84-like protein 1 OS=Pongo abelii GN=SH3YL1 PE=2 SV=1 Back     alignment and function description
>sp|B4K982|LST2_DROMO Lateral signaling target protein 2 homolog OS=Drosophila mojavensis GN=GI24295 PE=3 SV=1 Back     alignment and function description
>sp|B4NFJ7|LST2_DROWI Lateral signaling target protein 2 homolog OS=Drosophila willistoni GN=GK22512 PE=3 SV=1 Back     alignment and function description
>sp|B4M140|LST2_DROVI Lateral signaling target protein 2 homolog OS=Drosophila virilis GN=GJ23073 PE=3 SV=1 Back     alignment and function description
>sp|B4IC49|LST2_DROSE Lateral signaling target protein 2 homolog OS=Drosophila sechellia GN=GM10129 PE=3 SV=1 Back     alignment and function description
>sp|Q9VB70|LST2_DROME Lateral signaling target protein 2 homolog OS=Drosophila melanogaster GN=CG6051 PE=1 SV=3 Back     alignment and function description
>sp|B3P851|LST2_DROER Lateral signaling target protein 2 homolog OS=Drosophila erecta GN=GG12136 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
255550307 493 zinc ion binding protein, putative [Rici 0.934 0.640 0.813 1e-150
225444597 475 PREDICTED: uncharacterized protein LOC10 0.943 0.671 0.768 1e-146
356547982 484 PREDICTED: uncharacterized protein LOC10 0.931 0.650 0.774 1e-144
388520069 481 unknown [Medicago truncatula] 0.908 0.638 0.778 1e-144
357479313424 Lateral signaling target protein-like pr 0.908 0.724 0.778 1e-144
356565629 484 PREDICTED: uncharacterized protein LOC10 0.931 0.650 0.771 1e-143
312281885 479 unnamed protein product [Thellungiella h 0.920 0.649 0.747 1e-136
449518137 469 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.896 0.646 0.758 1e-136
449452618 469 PREDICTED: uncharacterized protein LOC10 0.896 0.646 0.758 1e-136
297815442 476 zinc finger family protein [Arabidopsis 0.931 0.661 0.724 1e-135
>gi|255550307|ref|XP_002516204.1| zinc ion binding protein, putative [Ricinus communis] gi|223544690|gb|EEF46206.1| zinc ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/317 (81%), Positives = 278/317 (87%), Gaps = 1/317 (0%)

Query: 22  SNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDILRNN-MPPEVNLKNVLSGIFAIITGQ 80
           + + KEDY + +P ES+D +D GYDSS+D CT I  +N   PEVNLKNVLSGI AI+TG+
Sbjct: 57  TKAVKEDYSFQYPFESEDYLDDGYDSSEDTCTAIQSSNSRHPEVNLKNVLSGIVAILTGK 116

Query: 81  NKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAE 140
           NK PS  MNQQ   SNVSF GS KNGDTYLHSSVYIPSAPPLL+  G+ Y AYKEVLEAE
Sbjct: 117 NKVPSVSMNQQLPISNVSFLGSEKNGDTYLHSSVYIPSAPPLLDTVGINYNAYKEVLEAE 176

Query: 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRV 200
           PPEWLPDSSTTVCMQCT+PFTALTRGRHHCRFCGGVFCR CTKGRCLLPV+FRERNPQRV
Sbjct: 177 PPEWLPDSSTTVCMQCTSPFTALTRGRHHCRFCGGVFCRGCTKGRCLLPVKFRERNPQRV 236

Query: 201 CDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLR 260
           CD CYDRLDPLQ VLINTISNAVQVAKHDV+DWTCTRGWLNLPVGLSME+EIYKASNTLR
Sbjct: 237 CDTCYDRLDPLQAVLINTISNAVQVAKHDVMDWTCTRGWLNLPVGLSMEHEIYKASNTLR 296

Query: 261 SYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSA 320
           SYCQVA  NPE+SIPLAVL GAKGLAILTVAKAG LVSYK+GTGLVVARRSDGSWSAPSA
Sbjct: 297 SYCQVARLNPEKSIPLAVLKGAKGLAILTVAKAGALVSYKVGTGLVVARRSDGSWSAPSA 356

Query: 321 ILSVGLGWGAQVNSHVF 337
           I SVGLGWGAQ+   + 
Sbjct: 357 IWSVGLGWGAQIGGELM 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444597|ref|XP_002274191.1| PREDICTED: uncharacterized protein LOC100242383 [Vitis vinifera] gi|297738504|emb|CBI27749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356547982|ref|XP_003542383.1| PREDICTED: uncharacterized protein LOC100810604 [Glycine max] Back     alignment and taxonomy information
>gi|388520069|gb|AFK48096.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357479313|ref|XP_003609942.1| Lateral signaling target protein-like protein [Medicago truncatula] gi|355510997|gb|AES92139.1| Lateral signaling target protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356565629|ref|XP_003551041.1| PREDICTED: uncharacterized protein LOC100780209 [Glycine max] Back     alignment and taxonomy information
>gi|312281885|dbj|BAJ33808.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|449518137|ref|XP_004166100.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101214492 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452618|ref|XP_004144056.1| PREDICTED: uncharacterized protein LOC101214492 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297815442|ref|XP_002875604.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297321442|gb|EFH51863.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
TAIR|locus:2084716 485 AT3G43230 [Arabidopsis thalian 0.955 0.665 0.697 3.4e-125
TAIR|locus:2019362 510 AT1G29800 [Arabidopsis thalian 0.585 0.388 0.592 3.7e-68
ASPGD|ASPL0000012058 410 AN4168 [Emericella nidulans (t 0.266 0.219 0.516 2.6e-15
UNIPROTKB|Q96HL8 342 SH3YL1 "SH3 domain-containing 0.286 0.283 0.459 8.9e-15
POMBASE|SPAPJ696.02 430 SPAPJ696.02 "actin cortical pa 0.286 0.225 0.448 2.2e-14
MGI|MGI:1346118 340 Sh3yl1 "Sh3 domain YSC-like 1" 0.286 0.285 0.438 2.7e-14
RGD|1306440 340 Sh3yl1 "SH3 domain containing, 0.286 0.285 0.438 2.7e-14
UNIPROTKB|F1NNR2 294 SH3YL1 "Uncharacterized protei 0.284 0.326 0.432 1e-13
UNIPROTKB|Q49AA1192 ZFYVE28 "ZFYVE28 protein" [Hom 0.189 0.333 0.469 1.3e-13
UNIPROTKB|F1Q0G4 343 SH3YL1 "Uncharacterized protei 0.286 0.282 0.418 3.7e-13
TAIR|locus:2084716 AT3G43230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
 Identities = 231/331 (69%), Positives = 270/331 (81%)

Query:     9 GGCQKAKKPYPTVSNSTKEDYMYPFPLESDDVIDGGYDSSDDQCTDI---LRNNMPPEVN 65
             GG +   K +   S  TK++  YP  ++S D +D GYDSS +  T     ++ N  PEVN
Sbjct:    39 GGYEDGPK-WSVQSIPTKKEVEYPI-IDSGDYVDDGYDSSGELSTTTTPPIQGNEKPEVN 96

Query:    66 LKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDTYLHSSVYIPSAPPLLEP 125
             LKNVL+G+ AI+TG+NK P D   Q+  SSNVSF GSG NGDT++HSSVYIPSAPPLLEP
Sbjct:    97 LKNVLTGLIAIVTGRNKNPLD---QKNPSSNVSFLGSGTNGDTFVHSSVYIPSAPPLLEP 153

Query:   126 DGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185
              G+ Y  YKE+LEAEPPEWLPDS  + CMQC+ PFTA+T GRHHCRFCGG+FCR C+KGR
Sbjct:   154 SGINYSVYKELLEAEPPEWLPDSLASTCMQCSTPFTAITCGRHHCRFCGGIFCRNCSKGR 213

Query:   186 CLLPVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVG 245
             CL+P RFRERNPQRVCD+CY+RLDPLQ VLIN+ISNAVQVAKHDVVDWTC+RGWLNLPVG
Sbjct:   214 CLMPSRFRERNPQRVCDSCYERLDPLQCVLINSISNAVQVAKHDVVDWTCSRGWLNLPVG 273

Query:   246 LSMEYEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGL 305
             LSME EIYKA+NTLR YCQVA  +PE+SIP AVL+ AKGLAI+TVAKAG L+SYKLGTGL
Sbjct:   274 LSMEDEIYKAANTLRGYCQVARLDPEKSIPHAVLSRAKGLAIITVAKAGALLSYKLGTGL 333

Query:   306 VVARRSDGSWSAPSAILSVGLGWGAQVNSHV 336
             V++RR DGSWSAPSAILSVGLGWGAQ+   +
Sbjct:   334 VISRRPDGSWSAPSAILSVGLGWGAQIGGEL 364
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
GO:0006914 "autophagy" evidence=RCA
TAIR|locus:2019362 AT1G29800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000012058 AN4168 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HL8 SH3YL1 "SH3 domain-containing YSC84-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPAPJ696.02 SPAPJ696.02 "actin cortical patch component Lsb4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
MGI|MGI:1346118 Sh3yl1 "Sh3 domain YSC-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306440 Sh3yl1 "SH3 domain containing, Ysc84-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNR2 SH3YL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q49AA1 ZFYVE28 "ZFYVE28 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0G4 SH3YL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016369001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (398 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
cd11526 201 cd11526, SYLF_FYVE, The SYLF domain (also called D 9e-43
pfam0136368 pfam01363, FYVE, FYVE zinc finger 6e-26
cd11525 199 cd11525, SYLF_SH3YL1_like, The SYLF domain (also c 3e-25
smart0006468 smart00064, FYVE, Protein present in Fab1, YOTB, V 3e-21
cd11524 194 cd11524, SYLF, The SYLF domain (also called DUF500 7e-19
cd0006557 cd00065, FYVE, FYVE domain; Zinc-binding domain; t 2e-17
COG2930 227 COG2930, COG2930, Uncharacterized conserved protei 2e-12
PTZ00303 1374 PTZ00303, PTZ00303, phosphatidylinositol kinase; P 0.003
>gnl|CDD|211402 cd11526, SYLF_FYVE, The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins Back     alignment and domain information 
 Score =  146 bits (371), Expect = 9e-43
 Identities = 55/83 (66%), Positives = 66/83 (79%)

Query: 250 YEIYKASNTLRSYCQVAESNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVAR 309
            EI KA+NTL+++ +     P++SIP A+L GAKGLA LTVAKAG +VS K+GTGLVVAR
Sbjct: 1   GEIRKAANTLQNFFKGGNLEPDQSIPHALLRGAKGLAFLTVAKAGFIVSGKVGTGLVVAR 60

Query: 310 RSDGSWSAPSAILSVGLGWGAQV 332
             DGSWSAPSAI + GLGWGAQV
Sbjct: 61  LPDGSWSAPSAIGTAGLGWGAQV 83

This subfamily is composed of uncharacterized proteins from plants and stramenopiles containing a FYVE zinc finger domain followed by a SYLF domain (also called DUF500). The SYLF domain of the related protein, SH3YL1, binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity. Length = 201
>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger Back     alignment and domain information
>gnl|CDD|211401 cd11525, SYLF_SH3YL1_like, The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins Back     alignment and domain information
>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>gnl|CDD|211400 cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module Back     alignment and domain information
>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>gnl|CDD|225482 COG2930, COG2930, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 338
KOG1843 473 consensus Uncharacterized conserved protein [Funct 100.0
COG2930 227 Uncharacterized conserved protein [Function unknow 99.85
PF0136369 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f 99.77
smart0006468 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 99.67
KOG1729288 consensus FYVE finger containing protein [General 99.58
PTZ00303 1374 phosphatidylinositol kinase; Provisional 99.57
KOG1818 634 consensus Membrane trafficking and cell signaling 99.53
KOG1819990 consensus FYVE finger-containing proteins [General 99.5
cd0006557 FYVE FYVE domain; Zinc-binding domain; targets pro 99.39
KOG1843 473 consensus Uncharacterized conserved protein [Funct 99.21
KOG1842 505 consensus FYVE finger-containing protein [General 99.16
KOG1841 1287 consensus Smad anchor for receptor activation [Def 99.08
KOG1409404 consensus Uncharacterized conserved protein, conta 98.81
KOG4424623 consensus Predicted Rho/Rac guanine nucleotide exc 98.58
KOG1811 1141 consensus Predicted Zn2+-binding protein, contains 97.9
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 97.15
PF02318118 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 96.96
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 96.23
KOG1729288 consensus FYVE finger containing protein [General 93.14
KOG1841 1287 consensus Smad anchor for receptor activation [Def 91.8
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 87.57
TIGR00622112 ssl1 transcription factor ssl1. This family is bas 85.54
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 84.51
PRK00464154 nrdR transcriptional regulator NrdR; Validated 83.69
TIGR02300129 FYDLN_acid conserved hypothetical protein TIGR0230 81.48
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-40  Score=323.30  Aligned_cols=289  Identities=34%  Similarity=0.416  Sum_probs=260.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCccchhhhhhcceeeecCCCCCCCCccccccCCCceeecccCCCCCc
Q 019595           29 YMYPFPLESDDVIDGGYDSSDDQCTDILRNNMPPEVNLKNVLSGIFAIITGQNKTPSDCMNQQESSSNVSFFGSGKNGDT  108 (338)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~v~~~g~~~nG~~  108 (338)
                      -.|.|.+.....++.+|+.+.+ |..+..-.+.++.++++|.-+|..++++.|....+   +..++..+.|+|++     
T Consensus        57 egflfsgr~Gsgviv~~l~dGt-wsapsa~~~~g~g~g~~Vgveltd~V~ilNs~~av---~~f~~~G~itLGgn-----  127 (473)
T KOG1843|consen   57 EGFLFSGRAGSGVIVGYLKDGT-WSAPSAIAEAGEGAGGMVGVELTDFVIILNSALAV---QSFARFGTITLGGN-----  127 (473)
T ss_pred             ccccccccccCceeeeecCCCC-cCcchhhhhccccchhhhHHHHHHHHHhhcchHhh---hhhhhcCeeeecCc-----
Confidence            3566779999999999987766 56777888899999999999999988888866544   33446677777744     


Q ss_pred             ccCCCCCCCCCCCcccCCCccchhhhhhcccCCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeec
Q 019595          109 YLHSSVYIPSAPPLLEPDGVRYIAYKEVLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLL  188 (338)
Q Consensus       109 ~~~~s~~~~~~p~l~~~~~~~~~~~~~~~~~~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~l  188 (338)
                            ...+++||.+.   ++...+..++.++|.|.+++....|++|..+|+.+..||||||.|+.+||..|+..+.++
T Consensus       128 ------~svsAgPLgr~---aea~a~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~v  198 (473)
T KOG1843|consen  128 ------LSVSAGPLGRN---AEAAASASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLV  198 (473)
T ss_pred             ------ceeccCccccc---chhhhhhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCC
Confidence                  55677888754   667788889999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCcceeecccccccccccccchhcccchhhhhccccccccccccccccCCcccchhHHHHHHHHHHHHh-hhccc
Q 019595          189 PVRFRERNPQRVCDACYDRLDPLQGVLINTISNAVQVAKHDVVDWTCTRGWLNLPVGLSMEYEIYKASNTLRSY-CQVAE  267 (338)
Q Consensus       189 P~~~~~~~p~RVC~~C~~~l~~~~~~l~~~~s~a~q~~~~d~~d~~~~r~wlnlPvglsmeeeI~kAa~iL~~~-~~~~~  267 (338)
                      |.++....++|||+.|+..|...|..+.+.++++.|.++||..||+..|.|.|.|.+.+|+.++++++++|+.+ ++...
T Consensus       199 p~p~a~d~l~RVldS~~~nl~~~q~~~~d~~~da~qy~d~d~~Di~~s~sstn~~~~~~~e~s~~rra~slrg~r~~~~d  278 (473)
T KOG1843|consen  199 PVPFAADPLQRVLDSCAFNLESVQGSLDDQYSDAAQYADHDYTDIPTSRSSTNFPSGRSMERSIYRRANSLRGYRSRVDD  278 (473)
T ss_pred             CCCcccCCHHHHHhhHhhccCCCccccccccCcccccCcccccccccccccccCcccCcchHHHHHhhhhcccceeeccc
Confidence            98899999999999999999989999999999999999999999999999999999999999999999999888 55566


Q ss_pred             CCCCcCcchhhhcCCcceEEEEEEeeeEEEEEecCceEEEEEcCCCccccceeEEEecceEEEEeeEEe
Q 019595          268 SNPERSIPLAVLNGAKGLAILTVAKAGVLVSYKLGTGLVVARRSDGSWSAPSAILSVGLGWGAQVNSHV  336 (338)
Q Consensus       268 ~~p~~~ip~~~l~~a~Gi~i~~v~k~g~~~g~~~G~G~vvaR~~~g~WS~P~~i~~~g~s~G~q~G~e~  336 (338)
                      .++|..| ...+.+|||++++|+.++|.+.+.+.|+|++++|+++|+||+|++|+..|++||.|+|.|.
T Consensus       279 ddded~~-~a~~srakgLa~~t~~~~g~l~~yk~~s~~~~srR~~Gs~s~~s~~s~~glgWgaq~ggey  346 (473)
T KOG1843|consen  279 DDDEDSI-DAGLSRAKGLAPITVARSGVLDTYKLGSSLVVSRRNDGSWSPRSAISRFGLGWGAQAGGEY  346 (473)
T ss_pred             Cchhhhh-hhhhhhcccCCcccccccccccccccccccceecccCCCCCCcchhcccccccchhccccc
Confidence            7788889 8899999999999999999999999999999999999999999999999999999999985

>COG2930 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>PTZ00303 phosphatidylinositol kinase; Provisional Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only] Back     alignment and domain information
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1842 consensus FYVE finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00622 ssl1 transcription factor ssl1 Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information
>PRK00464 nrdR transcriptional regulator NrdR; Validated Back     alignment and domain information
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
3t7l_A90 Crystal Structure Of The Fyve Domain Of Endofin (Zf 8e-12
1hyi_A65 Solution Structure Of The Eea1 Fyve Domain Complexe 3e-09
2yw8_A82 Crystal Structure Of Human Run And Fyve Domain-Cont 3e-09
1joc_A125 Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I 1e-08
2yqm_A89 Solution Structure Of The Fyve Domain In Zinc Finge 2e-08
1z2q_A84 High-Resolution Solution Structure Of The Lm5-1 Fyv 2e-07
3mpx_A434 Crystal Structure Of The Dh And Ph-1 Domains Of Hum 4e-07
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 5e-07
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 7e-07
1vfy_A73 Phosphatidylinositol-3-Phosphate Binding Fyve Domai 4e-06
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16) At 1.1a Resolution Length = 90 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 136 VLEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRER 195
           VL  + P W+PDS    CM C   FT  T+ RHHCR CG VFC +C   +C L    +E 
Sbjct: 6   VLGQKQPTWVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQYLEKE- 63
Query: 196 NPQRVCDACYDRLDPLQG 213
              RVC  CY+ +   Q 
Sbjct: 64  --ARVCVVCYETISKAQA 79
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 Back     alignment and structure
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 Back     alignment and structure
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 Back     alignment and structure
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 Back     alignment and structure
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84 Back     alignment and structure
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5 Length = 434 Back     alignment and structure
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of Vps27p Protein From Saccharomyces Cerevisiae Length = 73 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 2e-30
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 8e-30
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 9e-29
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 1e-28
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 9e-28
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 1e-25
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 4e-20
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 1e-18
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 6e-18
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 9e-18
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 7e-12
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 1e-11
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 7e-08
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 1e-06
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 Back     alignment and structure
 Score =  109 bits (275), Expect = 2e-30
 Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 139 AEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQ 198
                W  D     C  C   FT   R RHHCR CG V C  C++ R  +P       P+
Sbjct: 10  QSKGYWQEDEDAPACNGCGCVFTTTVR-RHHCRNCGYVLCGDCSRHRAAIP-MRGITEPE 67

Query: 199 RVCDACYDRL 208
           RVCDACY  L
Sbjct: 68  RVCDACYLAL 77
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 Back     alignment and structure
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 Back     alignment and structure
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 99.83
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 99.82
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 99.8
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 99.8
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 99.79
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 99.77
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 99.71
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 99.7
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 99.7
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 99.61
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 99.61
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 97.9
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 96.51
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 96.09
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 95.34
2csz_A76 Synaptotagmin-like protein 4; exophilin 2, granuph 94.07
1wff_A85 Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc 91.94
1wfh_A64 Zinc finger (AN1-like) family protein; ZF-AN1 doma 91.32
1wfp_A74 Zinc finger (AN1-like) family protein; ZF-AN1 doma 90.49
1wfl_A74 Zinc finger protein 216; ZF-AN1 domain, zinc bindi 89.96
1wg2_A64 Zinc finger (AN1-like) family protein; riken struc 87.44
1z60_A59 TFIIH basal transcription factor complex P44 subun 83.97
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 83.09
2ect_A78 Ring finger protein 126; metal binding protein, st 82.06
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 81.23
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 80.59
1x4w_A67 Hypothetical protein FLJ13222; ZF-AN1 domain, zinc 80.27
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Back     alignment and structure
Probab=99.83  E-value=1.6e-21  Score=153.97  Aligned_cols=70  Identities=40%  Similarity=0.816  Sum_probs=62.2

Q ss_pred             CCCCccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccccc
Q 019595          140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL  211 (338)
Q Consensus       140 ~~p~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~  211 (338)
                      ..+.|+||+++..|+.|+++|+ +++||||||+||+|||++||+++..+|. ....+++|||+.||..|...
T Consensus        11 ~~~~W~pd~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~~   80 (84)
T 1z2q_A           11 SKGYWQEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRSS   80 (84)
T ss_dssp             CCSCCCCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHTS
T ss_pred             CCCccccCCCCCCCcCcCCccc-cchhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhhc
Confidence            3679999999999999999999 6689999999999999999999998883 33368999999999988643
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Back     alignment and structure
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Back     alignment and structure
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Back     alignment and structure
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Back     alignment and structure
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2 Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 338
d1joca164 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) 2e-19
d1dvpa272 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me 9e-19
d1vfya_67 g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch 3e-17
d1wfka_88 g.50.1.1 (A:) Zinc finger FYVE domain containing p 1e-15
d1zbdb_124 g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat 8e-15
d1y02a251 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro 2e-12
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 2e-19
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 144 WLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA 203
           W  D+    CM C   F+ +T  RHHCR CG +FC  C+    L P     + P RVCDA
Sbjct: 2   WAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTP---SSKKPVRVCDA 57

Query: 204 CYDRL 208
           C++ L
Sbjct: 58  CFNDL 62
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
d1joca164 Eea1 {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1dvpa272 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 99.75
d1vfya_67 vps27p protein {Baker's yeast (Saccharomyces cerev 99.72
d1wfka_88 Zinc finger FYVE domain containing protein 19 {Mou 99.67
d1y02a251 Rififylin (FYVE-RING finger protein Sakura) {Human 99.4
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 98.98
d1wfla_74 Zinc finger A20 domain containing protein 2 {Mouse 91.35
d1wffa_85 ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus 89.97
d1wfha_64 Zinc finger A20 and AN1 domains containing protein 89.93
d1wfpa_74 Zinc finger A20 and AN1 domains containing protein 88.9
d1z60a159 TFIIH p44 subunit cysteine-rich domain {Human (Hom 86.08
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 84.65
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 81.82
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 80.27
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-21  Score=144.66  Aligned_cols=63  Identities=43%  Similarity=1.056  Sum_probs=57.4

Q ss_pred             CccCCCCCCccCCCCcCCccccccccccccCCceEeCCCCCceeecCccCCCCcceeeccccccccc
Q 019595          143 EWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD  209 (338)
Q Consensus       143 ~W~pd~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~  209 (338)
                      .|+||++++.|+.|+++|+ +++||||||+||++||+.|++++.++|.   ..+|+|||+.||+.|+
T Consensus         1 rW~~d~~~~~C~~C~~~F~-~~~rrHHCR~CG~v~C~~Cs~~~~~~~~---~~~~~RVC~~C~~~l~   63 (64)
T d1joca1           1 KWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ   63 (64)
T ss_dssp             CCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred             CCCCcccCCcCcCcCCccc-CCccccchhhhCCeecccccCCceecCC---CCCccEehHHHHHHhc
Confidence            5999999999999999999 5678999999999999999999988873   3579999999999885
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure