Citrus Sinensis ID: 019596

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MALIQFQAHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM
ccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcHHHHccccccHHHHHHcccc
ccEEEEccccccccHHcccccccccccccccHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccHHHcccccccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHccc
MALIQFQAHatedwlswsccssssggcslrKILAlkpsrknlllkpksslvCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESlwygeerprwlgpipydypsyltgelpgdygfdvaglskdpmafQKYFNFEILHARWAMLGALGALVPEVLDMVGAFhlvepvwwrvgysklqgetldylgipglhlagsQGVIVIAICQALLMVgpecarycgiealeplgiflpgdinypggalfdplnlskdpvaFEELKVKEIKNGRLAMVAWLGFYIQAAftgkgpvqnlldhisdplhNNLLSMVKSM
MALIQFQahatedwlswSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNeslwygeerprwlGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM
MALIQFQAHATEDwlswsccssssggcslRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM
***IQFQAHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQN************************NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPL***********
*AL****AHATE*WLSWSCCSSSSGG************************************LVFSAI******************************************************RWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM
MALIQFQAHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM
*ALIQFQAHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANS***********************************LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALIQFQAHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query338 2.2.26 [Sep-21-2011]
P22686256 Chlorophyll a-b binding p N/A no 0.713 0.941 0.468 1e-55
P14278265 Chlorophyll a-b binding p N/A no 0.615 0.784 0.532 4e-55
P07370265 Chlorophyll a-b binding p N/A no 0.642 0.818 0.515 1e-54
P12328264 Chlorophyll a-b binding p N/A no 0.689 0.882 0.477 2e-54
P12469267 Chlorophyll a-b binding p N/A no 0.745 0.943 0.466 3e-54
P12470266 Chlorophyll a-b binding p N/A no 0.742 0.943 0.468 4e-54
P12062265 Chlorophyll a-b binding p N/A no 0.615 0.784 0.522 4e-54
P07369267 Chlorophyll a-b binding p N/A no 0.713 0.902 0.476 5e-54
P27494265 Chlorophyll a-b binding p N/A no 0.615 0.784 0.518 5e-54
P27518265 Chlorophyll a-b binding p N/A no 0.739 0.943 0.469 5e-54
>sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1 Back     alignment and function desciption
 Score =  217 bits (552), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 118/252 (46%), Positives = 150/252 (59%), Gaps = 11/252 (4%)

Query: 84  LLQNRMLETK-KAALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYDYPSYLTGELP 141
           L+ NR L  K +AA + +   +  A  A++  + WYG +R +WLGP   + P+YLTGE P
Sbjct: 5   LISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFP 64

Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
           GDYG+D AGLS DP  F+KY   E++HARWA+LGALG L PE+L         EPVW++ 
Sbjct: 65  GDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKA 124

Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPG 261
           G        LDYLG P L  A  Q ++     Q +LM   E  R  G  A E L    PG
Sbjct: 125 GAQIFSEGGLDYLGSPALIHA--QNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPG 182

Query: 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 321
           +        FDPL L+ DP  F ELKVKEIKNGRLAM +  GF++QA  TGKGP+QNL D
Sbjct: 183 ES-------FDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLAD 235

Query: 322 HISDPLHNNLLS 333
           H++DP  NN  +
Sbjct: 236 HLADPGTNNAFA 247
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Chlamydomonas moewusii (taxid: 3054)
>sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1 Back     alignment and function description
>sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1 Back     alignment and function description
>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1 Back     alignment and function description
>sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1 Back     alignment and function description
>sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1 Back     alignment and function description
>sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1 Back     alignment and function description
>sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1 Back     alignment and function description
>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1 Back     alignment and function description
>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
297839529330 chlorophyll A-B binding family protein [ 0.908 0.930 0.788 1e-144
224083380338 light-harvesting complex II protein Lhcb 0.846 0.846 0.835 1e-142
15223108327 putative chlorophyll a/b-binding protein 0.902 0.932 0.778 1e-142
449455655338 PREDICTED: chlorophyll a-b binding prote 0.896 0.896 0.781 1e-141
255539358329 chlorophyll A/B binding protein, putativ 0.967 0.993 0.770 1e-141
449525738338 PREDICTED: chlorophyll a-b binding prote 0.896 0.896 0.778 1e-140
225457685331 PREDICTED: chlorophyll a-b binding prote 0.849 0.867 0.878 1e-139
358248178331 uncharacterized protein LOC100786260 [Gl 0.852 0.870 0.819 1e-138
414884910315 TPA: hypothetical protein ZEAMMB73_23528 0.887 0.952 0.733 1e-125
115478412321 Os09g0296800 [Oryza sativa Japonica Grou 0.834 0.878 0.765 1e-125
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/308 (78%), Positives = 275/308 (89%), Gaps = 1/308 (0%)

Query: 30  RKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRM 89
           ++I   +P R  + +  +S  +C+ASWQELAGVLVFSAIPFTAVKAIANS LGE L+ R+
Sbjct: 24  QRIYVPEPPRSRIAVT-RSRSICRASWQELAGVLVFSAIPFTAVKAIANSSLGESLRRRL 82

Query: 90  LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
            E KK A+++SS+FKA A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+A
Sbjct: 83  EEKKKEAVENSSRFKAKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIA 142

Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
           GL KD + F KYFNFEILHARWAML ALGAL+PEVLD+ GAFH  EPVWWRVGYSKLQGE
Sbjct: 143 GLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGE 202

Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269
           TLDYLGIPGLH+AGSQGVIVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG 
Sbjct: 203 TLDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGT 262

Query: 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHN 329
           LFDPLNLS+DPVAFE+LKVKEIKNGRLAMVAWLGFY QAAFTGKGPVQNL+DH+SDPLHN
Sbjct: 263 LFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHN 322

Query: 330 NLLSMVKS 337
           NLL+M+++
Sbjct: 323 NLLAMLQT 330

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa] gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana] gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis thaliana] gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic [Vitis vinifera] gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max] gi|255636882|gb|ACU18774.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays] Back     alignment and taxonomy information
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group] gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica Group] gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
TAIR|locus:2011691327 AT1G76570 [Arabidopsis thalian 0.902 0.932 0.778 2.3e-133
TAIR|locus:2089139266 LHCB2.3 "photosystem II light 0.615 0.781 0.532 7e-54
TAIR|locus:2044988265 LHCB2.2 "photosystem II light 0.624 0.796 0.520 1e-52
TAIR|locus:2042148265 LHCB2.1 "photosystem II light 0.624 0.796 0.520 1e-52
TAIR|locus:2162540265 LHCB3 "light-harvesting chloro 0.615 0.784 0.504 1.5e-51
UNIPROTKB|P12331261 CAB2R "Chlorophyll a-b binding 0.647 0.839 0.502 1.3e-50
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.644 0.816 0.486 1.3e-50
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.644 0.816 0.486 1.3e-50
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 0.644 0.816 0.486 1.3e-50
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.624 0.796 0.515 1.7e-50
TAIR|locus:2011691 AT1G76570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
 Identities = 239/307 (77%), Positives = 272/307 (88%)

Query:    31 KILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRML 90
             +IL  KP  +N +   KS  +C+ASWQELAGVLVFSAIPFTAVKAIANS +G  L+ R+ 
Sbjct:    23 RILVSKP--RNRIAVTKSRSICRASWQELAGVLVFSAIPFTAVKAIANSSIGVSLRRRLE 80

Query:    91 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
             E KK A+++SS+FK+ A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+AG
Sbjct:    81 EKKKEAVENSSRFKSKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAG 140

Query:   151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
             L KD + F KYFNFEILHARWAML ALGAL+PEV D+ G FH  EPVWWRVGYSKLQGET
Sbjct:   141 LGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGET 200

Query:   211 LDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGAL 270
             L+YLGIPGLH+AGSQGVIVIAICQ LLMVGPE ARYCGIEALEPLGI+LPGDINYPGG L
Sbjct:   201 LEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTL 260

Query:   271 FDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 330
             FDPLNLS+DPVAFE+LKVKEIKNGRLAMVAWLGFY QAAFTGKGPVQNL+DH+SDPLHNN
Sbjct:   261 FDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNN 320

Query:   331 LLSMVKS 337
             L++M+++
Sbjct:   321 LIAMLQT 327
GO:0009507 "chloroplast" evidence=ISM
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009637 "response to blue light" evidence=IEP
GO:0010218 "response to far red light" evidence=IEP
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
TAIR|locus:2089139 LHCB2.3 "photosystem II light harvesting complex gene 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162540 LHCB3 "light-harvesting chlorophyll B-binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.2__1945__AT1G76570.1
annotation not avaliable (330 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 0.0
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 2e-81
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 2e-48
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 2e-45
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 7e-40
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 6e-38
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 7e-38
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 2e-37
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 9e-36
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 7e-35
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 2e-28
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 8e-18
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 1e-08
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 2e-06
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 4e-04
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 0.001
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information 
 Score =  612 bits (1579), Expect = 0.0
 Identities = 262/322 (81%), Positives = 286/322 (88%), Gaps = 3/322 (0%)

Query: 16  SWSCCSSS-SGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVK 74
           S S  SSS SG  SL +ILA KP R+    +P SS  C+ASWQELAGVLVFSAIPFTAVK
Sbjct: 4   SVSSSSSSFSGQHSLPRILASKPRRRRATRRPASS--CRASWQELAGVLVFSAIPFTAVK 61

Query: 75  AIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPS 134
           AIANS LGE LQ R+ ETKKAA+++SS FKA A++ARNES WYGEERPRWLGPIPYDYP 
Sbjct: 62  AIANSSLGESLQRRLEETKKAAVEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPD 121

Query: 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194
           +LTGELPGDYGFD+AGL KDP+AF KYFNFEILHARWAML ALG ++PEVLD+ GA H  
Sbjct: 122 HLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFA 181

Query: 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEP 254
           EPVWWRVGY+KLQG+TLDYLGIPGLH+AGSQGVIVIAICQALLMVGPE ARYCGIEALEP
Sbjct: 182 EPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEP 241

Query: 255 LGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314
           LGI+LPGDINYPGGALFDPL LSKDPVAFE+LKVKEIKNGRLAMVAWLGFYIQAA TGKG
Sbjct: 242 LGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 301

Query: 315 PVQNLLDHISDPLHNNLLSMVK 336
           PVQNL+DH+SDPLHNNLLS +K
Sbjct: 302 PVQNLVDHLSDPLHNNLLSSLK 323

Length = 324
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 338
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.6
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.57
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 99.51
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.47
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.46
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.45
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.44
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.41
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.41
PLN00187286 photosystem II light-harvesting complex II protein 99.38
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.37
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.36
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.28
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 98.98
PHA0233735 putative high light inducible protein 98.02
PLN00084214 photosystem II subunit S (PsbS); Provisional 97.78
PLN00014250 light-harvesting-like protein 3; Provisional 97.47
PHA0233735 putative high light inducible protein 97.08
PLN00014250 light-harvesting-like protein 3; Provisional 95.36
PLN00084214 photosystem II subunit S (PsbS); Provisional 92.0
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-97  Score=715.92  Aligned_cols=317  Identities=81%  Similarity=1.348  Sum_probs=295.2

Q ss_pred             ccccCC-CCCchhHHHHhcCccccccccCCCCcchhhhhHhhhhhhhhhcccchhHHHHhhcChhhHHHHHHHHHhhHHh
Q 019596           18 SCCSSS-SGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAA   96 (338)
Q Consensus        18 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (338)
                      ||-+|| ++.-++++++++++|++..  +++.+++|||||||+|||+||||+|||++|+||||+||++||+|++++|+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (324)
T PLN00171          6 SSSSSSFSGQHSLPRILASKPRRRRA--TRRPASSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAA   83 (324)
T ss_pred             cccccccccccccchhhccccccccc--cCCCCccchhhHHhhhheeeeecccHHHHHHHhcCcHHHHHHHHHHHhhHHH
Confidence            444444 3445689999999999988  7778999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHh
Q 019596           97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA  176 (338)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~  176 (338)
                      +++++++++.++++|+.+.||+++|++||||+++++|+||||++|||||||||||++||++++||||+|||||||||||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~  163 (324)
T PLN00171         84 VEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAA  163 (324)
T ss_pred             HHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHH
Confidence            99999999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhccCccccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC
Q 019596          177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG  256 (338)
Q Consensus       177 vG~lv~Ell~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g  256 (338)
                      +|+++||++++.|.+++++|+||++|+..+++..++|+++|+..+++.+.+.+++++|+++|+++|++|+.++...++.+
T Consensus       164 ~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g  243 (324)
T PLN00171        164 LGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG  243 (324)
T ss_pred             hhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc
Confidence            99999999998888888889999999888888888898888765666788999999999999999999998876555556


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596          257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK  336 (338)
Q Consensus       257 ~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~  336 (338)
                      .+.|||..||||.+|||||+++|+++++++|++|||||||||+||+||++|+.+||+||++||.+|++||+||||+++++
T Consensus       244 ~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~  323 (324)
T PLN00171        244 IYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK  323 (324)
T ss_pred             ccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence            67899999999988999999999999999999999999999999999999999999999999999999999999999985

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 3e-53
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 3e-53
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 8e-53
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 2e-33
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 2e-30
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 3e-30
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 5e-30
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 6e-29
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 4e-28
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 5e-26
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 1e-22
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 1e-21
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 1e-20
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 3e-20
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 3e-18
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 1e-15
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/231 (48%), Positives = 144/231 (62%), Gaps = 10/231 (4%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
           +  ++ S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++
Sbjct: 8   KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 67
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
           H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P L  A  Q +
Sbjct: 68  HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 124
Query: 228 IVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELK 287
           + I  CQ +LM   E  R  G     PLG  +  D  YPGG+ FDPL L+ DP AF ELK
Sbjct: 125 LAIWACQVILMGAVEGYRIAG----GPLGEVV--DPLYPGGS-FDPLGLADDPEAFAELK 177
Query: 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 338
           VKEIKNGRLAM +  GF++QA  TGKGP++NL DH++DP++NN  +   + 
Sbjct: 178 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNF 228
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 4e-63
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 9e-56
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 3e-55
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 3e-49
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 5e-46
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 6e-46
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
 Score =  199 bits (507), Expect = 4e-63
 Identities = 108/232 (46%), Positives = 139/232 (59%), Gaps = 10/232 (4%)

Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
           K     + A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K 
Sbjct: 2   KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 61

Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
              E++H+RWAMLGALG++ PE+L   G     E VW++ G        LDYLG P   L
Sbjct: 62  RELEVIHSRWAMLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPS--L 118

Query: 222 AGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPV 281
             +Q ++ I   Q +LM   E  R  G    E +    PG         FDPL L+ DP 
Sbjct: 119 VHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-------FDPLGLADDPE 171

Query: 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLS 333
           AF ELKVKE+KNGRLAM +  GF++QA  TGKGP++NL DH++DP++NN  S
Sbjct: 172 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.42
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.41
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.37
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.37
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.31
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.25
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-67  Score=490.10  Aligned_cols=218  Identities=51%  Similarity=0.907  Sum_probs=194.6

Q ss_pred             hhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcc
Q 019596          109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV  188 (338)
Q Consensus       109 ~~~~~~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~  188 (338)
                      .+.+.+.||+++|++||||++.++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++..
T Consensus         9 ~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~   88 (232)
T 2bhw_A            9 VASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRN   88 (232)
T ss_dssp             -CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccC
Confidence            34457889999999999998778999999999999999999999999999999999999999999999999999999887


Q ss_pred             CccccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCC
Q 019596          189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG  268 (338)
Q Consensus       189 G~~~f~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg  268 (338)
                      | ++|+++.||++|...+++..++|+++|.+.  +.|.+.+++++|+++|+.+|.+|+.+    ++.++  ..|..||||
T Consensus        89 G-~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~--~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g~--~~d~~~Pg~  159 (232)
T 2bhw_A           89 G-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLV--HAQSILAIWATQVILMGAVEGYRIAG----GPLGE--VVDPLYPGG  159 (232)
T ss_dssp             T-CCCSCCSGGGSGGGGGSTTCEEGGGCTTSE--EECCHHHHHHHHHHHHHHHHHHHHHE----ETTEE--CSSSSCCCT
T ss_pred             C-cCCcccccccccchhccccchhcccCcchh--hHHHHHHHHHHHHHHHHHHHHHhhcc----Ccccc--cccccCCCc
Confidence            7 578889999999877776678898888643  45677888999999998899998865    12222  246679999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596          269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK  336 (338)
Q Consensus       269 ~gFDPLgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~  336 (338)
                      + |||||+.+|+++++++|++|||||||||+|++|+++|+++||+||++||.+|++||+|||+++++.
T Consensus       160 ~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~  226 (232)
T 2bhw_A          160 S-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT  226 (232)
T ss_dssp             T-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTT
T ss_pred             c-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHH
Confidence            7 999999999999999999999999999999999999999999999999999999999999999874
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 338
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 1e-71
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  219 bits (560), Expect = 1e-71
 Identities = 110/222 (49%), Positives = 138/222 (62%), Gaps = 10/222 (4%)

Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
           S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAM
Sbjct: 1   SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 60

Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
           LGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  C
Sbjct: 61  LGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWAC 117

Query: 234 QALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKN 293
           Q +LM   E  R  G    E +      D  YPGG+ FDPL L+ DP AF ELKVKEIKN
Sbjct: 118 QVILMGAVEGYRIAGGPLGEVV------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 170

Query: 294 GRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335
           GRLAM +  GF++QA  TGKGP++NL DH++DP++NN  +  
Sbjct: 171 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFA 212

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.49
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.6e-67  Score=480.76  Aligned_cols=213  Identities=53%  Similarity=0.937  Sum_probs=180.7

Q ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccCcccc
Q 019596          114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL  193 (338)
Q Consensus       114 ~~wy~~~r~~wl~~~~~~~P~~LdGslpGD~GFDPLGLs~dpe~~~~~ReAELkHGR~AMLA~vG~lv~Ell~~~G~~~f  193 (338)
                      +.|||+||++||||++.++|+||||+||||||||||||++|+++++||||+|||||||||||++|++++|+++..+. .+
T Consensus         1 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~-~~   79 (218)
T d1rwta_           1 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KF   79 (218)
T ss_dssp             CTTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CC
T ss_pred             CCCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCC-CC
Confidence            57999999999999888899999999999999999999999999999999999999999999999999999887653 45


Q ss_pred             CcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCC
Q 019596          194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDP  273 (338)
Q Consensus       194 ~~p~W~~aG~~~~~g~~l~yl~~p~l~~a~~~~i~~i~~~Qill~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDP  273 (338)
                      ..+.|++++........++++..+..  ...+.+..+..+++.++..+|..|..+.    +.+  ...|..|||+ +|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~~~----~~~--~~~~~~~~~g-~fdP  150 (218)
T d1rwta_          80 GEAVWFKAGSQIFSEGGLDYLGNPSL--VHAQSILAIWACQVILMGAVEGYRIAGG----PLG--EVVDPLYPGG-SFDP  150 (218)
T ss_dssp             SCCSHHHHGGGGGSTTCBCGGGCTTS--CCBCCHHHHHHHHHHHHHHHHHHHHHCB----TTB--CCSSSSCCCG-GGCT
T ss_pred             CCcccccccccccCcchhhhhcCchH--HHHHHHHHHHHHHHHHHhhhhhhcccCC----Ccc--cccCCCCCCC-Cccc
Confidence            66788887776666566666666543  2345556666666666777787775432    111  1346678888 7999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCCcchhHHHhhh
Q 019596          274 LNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK  336 (338)
Q Consensus       274 LgL~kdpe~~~~lk~kELKNGRLAMlA~lGf~~Qe~vTGkGPlenL~~hladP~~~N~~~~~~  336 (338)
                      +++.+|+++++++|+|||||||||||||+||++|+++||+||++||.+|++||+||||++++.
T Consensus       151 lg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~  213 (218)
T d1rwta_         151 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFAT  213 (218)
T ss_dssp             TCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTT
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999998763
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure