Citrus Sinensis ID: 019615

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34

MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIMNMF

cccccEEEEEEEccccEEEEEccccccccEEEEEEcccEEEEEEcHHHHHHcccccEEEccccEEEEEcccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcHHHHHccccccEEEEccccccccHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEcccHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccc

ccccEEEEEEEcccccEEEEEEccccEEEEEEcccccccEEEHHHHHHHcccccHEEEcccccEEEcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHccccHHHcccccccEEEEcccccHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHcccEEEEcccccHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccHHHHHHHHcccHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHEccc

MLDGMFSFVLLDTRDKSFIAARDaigvtplymgwgldgsIWFASEMKALSDdcerfisfppghiysskqgglrrwynppcyseqipsnpydplVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFciglegspdlKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYdvttirastpmfLMSRKIKSLGVKMVIsgegsdeifggylyfhkapnkeefHQETCRKIKALHLYDCLRANkstsawgvearvpfldkefintamsidpewkmvrpdlgRIEKWILRnafdddkqpylpkvSHFLIMNMF

MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKstsawgvearvPFLDKEFINTamsidpewkmvrPDLGRIEKWILRnafdddkqpylPKVSHFLIMNMF

MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFgvllsggldsslvAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIMNMF

****MFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIM***

*LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFLIMNMF

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		338	2.2.26 [Sep-21-2011]
Q9LFU1		578	Asparagine synthetase [gl	yes	no	0.970	0.567	0.884	1e-179
Q9LV77		578	Asparagine synthetase [gl	no	no	0.970	0.567	0.884	1e-178
Q43011		591	Asparagine synthetase [gl	yes	no	0.970	0.554	0.856	1e-175
P49094		586	Asparagine synthetase [gl	N/A	no	0.970	0.559	0.847	1e-169
P31752		590	Asparagine synthetase [gl	N/A	no	0.970	0.555	0.820	1e-165
O24661		586	Asparagine synthetase [gl	N/A	no	0.970	0.559	0.823	1e-164
O24338		525	Asparagine synthetase [gl	N/A	no	0.970	0.624	0.814	1e-164
P49078		584	Asparagine synthetase [gl	no	no	0.970	0.561	0.789	1e-162
P49092		586	Asparagine synthetase [gl	N/A	no	0.970	0.559	0.814	1e-162
P19252		583	Asparagine synthetase, ro	N/A	no	0.970	0.562	0.810	1e-160

>sp\|Q9LFU1\|ASNS3_ARATH Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis thaliana GN=ASN3 PE=2 SV=1	Back alignment and function desciption

 Score =  627 bits (1616), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 290/328 (88%), Positives = 314/328 (95%)

Query: 1   MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFP 60
           MLDGMF+FVLLDTRDKSFIAARDAIG+TPLY+GWGLDGS+WFASEMKALSDDCE+F+ FP
Sbjct: 116 MLDGMFAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDCEQFMCFP 175

Query: 61  PGHIYSSKQGGLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGG 120
           PGHIYSSKQGGLRRWYNPP +SE +PS PYDPLV+R  FEKAV+KRLMTDVPFGVLLSGG
Sbjct: 176 PGHIYSSKQGGLRRWYNPPWFSEVVPSTPYDPLVVRNTFEKAVIKRLMTDVPFGVLLSGG 235

Query: 121 LDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT 180
           LDSSLVA+VA R+L  SEAACQWGS+LH+FCIGL+GSPDLKA REVADYLGTRHHE HFT
Sbjct: 236 LDSSLVASVALRHLEKSEAACQWGSKLHTFCIGLKGSPDLKAGREVADYLGTRHHELHFT 295

Query: 181 VQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240
           VQ+GIDA+EEVIYH+ETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEGSDEIFGGYLYF
Sbjct: 296 VQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYF 355

Query: 241 HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWK 300
           HKAPNK+EFH+ETCRKIKALH YDCLRANKSTSAWGVEARVPFLDKEFIN AMSIDPEWK
Sbjct: 356 HKAPNKKEFHEETCRKIKALHQYDCLRANKSTSAWGVEARVPFLDKEFINVAMSIDPEWK 415

Query: 301 MVRPDLGRIEKWILRNAFDDDKQPYLPK 328
           M+RPDLGRIEKW+LRNAFDD+K PYLPK
Sbjct: 416 MIRPDLGRIEKWVLRNAFDDEKNPYLPK 443

Essential for nitrogen assimilation, distribution and remobilization within the plant via the phloem.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 4

>sp\|Q9LV77\|ASNS2_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis thaliana GN=ASN2 PE=2 SV=1	Back alignment and function description

>sp\|Q43011\|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3	Back alignment and function description

>sp\|P49094\|ASNS_MAIZE Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1 PE=2 SV=2	Back alignment and function description

>sp\|P31752\|ASNS_ASPOF Asparagine synthetase [glutamine-hydrolyzing] OS=Asparagus officinalis PE=2 SV=2	Back alignment and function description

>sp\|O24661\|ASNS_TRIVS Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3	Back alignment and function description

>sp\|O24338\|ASNS_SANAU Asparagine synthetase [glutamine-hydrolyzing] OS=Sandersonia aurantiaca GN=AND1 PE=2 SV=3	Back alignment and function description

>sp\|P49078\|ASNS1_ARATH Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Arabidopsis thaliana GN=ASN1 PE=2 SV=2	Back alignment and function description

>sp\|P49092\|ASNS1_LOTJA Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Lotus japonicus GN=AS1 PE=2 SV=2	Back alignment and function description

>sp\|P19252\|ASNS2_PEA Asparagine synthetase, root [glutamine-hydrolyzing] OS=Pisum sativum GN=AS2 PE=2 SV=3	Back alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		338
TAIR\|locus:2145377		578	ASN3 "asparagine synthetase 3"	0.979	0.572	0.837	7e-157
TAIR\|locus:2177694		578	ASN2 "asparagine synthetase 2"	0.979	0.572	0.837	3e-156
TAIR\|locus:2099580		584	ASN1 "glutamine-dependent aspa	0.979	0.566	0.744	1.6e-141
DICTYBASE\|DDB_G0286059		557	asns "asparagine synthetase" [	0.967	0.587	0.585	9.8e-103
ASPGD\|ASPL0000073587		571	AN4401 [Emericella nidulans (t	0.532	0.315	0.715	6.9e-96
SGD\|S000006349		572	ASN1 "Asparagine synthetase" [	0.547	0.323	0.678	8.8e-96
SGD\|S000003356		572	ASN2 "Asparagine synthetase" [	0.547	0.323	0.678	2.3e-95
UNIPROTKB\|G4ND55		583	MGG_00969 "Asparagine syntheta	0.532	0.308	0.682	6.9e-94
POMBASE\|SPBC119.10		557	asn1 "asparagine synthetase" [	0.961	0.583	0.559	5e-92
UNIPROTKB\|P22106		554	asnB [Escherichia coli K-12 (t	0.946	0.577	0.537	1.9e-90

TAIR\|locus:2145377 ASN3 "asparagine synthetase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
 Identities = 279/333 (83%), Positives = 303/333 (90%)

Query:     1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFP 60
             MLDGMF+FVLLDTRDKSFIAARDAIG+TPLY+GWGLDGS+WFASEMKALSDDCE+F+ FP
Sbjct:   116 MLDGMFAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDCEQFMCFP 175

Query:    61 PGHIYSSKQGGLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFXXXXXXX 120
             PGHIYSSKQGGLRRWYNPP +SE +PS PYDPLV+R  FEKAV+KRLMTDVPF       
Sbjct:   176 PGHIYSSKQGGLRRWYNPPWFSEVVPSTPYDPLVVRNTFEKAVIKRLMTDVPFGVLLSGG 235

Query:   121 XXXXXXAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT 180
                   A+VA R+L  SEAACQWGS+LH+FCIGL+GSPDLKA REVADYLGTRHHE HFT
Sbjct:   236 LDSSLVASVALRHLEKSEAACQWGSKLHTFCIGLKGSPDLKAGREVADYLGTRHHELHFT 295

Query:   181 VQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240
             VQ+GIDA+EEVIYH+ETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEGSDEIFGGYLYF
Sbjct:   296 VQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYF 355

Query:   241 HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWK 300
             HKAPNK+EFH+ETCRKIKALH YDCLRANKSTSAWGVEARVPFLDKEFIN AMSIDPEWK
Sbjct:   356 HKAPNKKEFHEETCRKIKALHQYDCLRANKSTSAWGVEARVPFLDKEFINVAMSIDPEWK 415

Query:   301 MVRPDLGRIEKWILRNAFDDDKQPYLPKVSHFL 333
             M+RPDLGRIEKW+LRNAFDD+K PYLPK  H L
Sbjct:   416 MIRPDLGRIEKWVLRNAFDDEKNPYLPK--HIL 446

GO:0004066 "asparagine synthase (glutamine-hydrolyzing) activity" evidence=IEA;ISS

GO:0006529 "asparagine biosynthetic process" evidence=IEA;IGI;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0004071 "aspartate-ammonia ligase activity" evidence=IGI

TAIR\|locus:2177694 ASN2 "asparagine synthetase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2099580 ASN1 "glutamine-dependent asparagine synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000073587 AN4401 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

SGD\|S000006349 ASN1 "Asparagine synthetase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

SGD\|S000003356 ASN2 "Asparagine synthetase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|G4ND55 MGG_00969 "Asparagine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

POMBASE\|SPBC119.10 asn1 "asparagine synthetase" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

UNIPROTKB\|P22106 asnB [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFU1	ASNS3_ARATH	6, ., 3, ., 5, ., 4	0.8841	0.9704	0.5674	yes	no
Q43011	ASNS2_ORYSJ	6, ., 3, ., 5, ., 4	0.8567	0.9704	0.5549	yes	no
O24338	ASNS_SANAU	6, ., 3, ., 5, ., 4	0.8140	0.9704	0.6247	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5	0.963
3rd Layer	6.3.5.4	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.2829.1	SubName- Full=Putative uncharacterized protein; (566 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_XVIII0241	SubName- Full=Putative uncharacterized protein; (407 aa)		•	•	0.967
	gw1.XIV.3012.1	aspartate transaminase (EC-2.6.1.1) (403 aa)		•	•	0.967
	estExt_fgenesh4_pg.C_LG_VI1672	aspartate transaminase (EC-2.6.1.1) (449 aa)		•	•	0.967
	grail3.0013044701	aspartate transaminase (EC-2.6.1.1) (466 aa)		•	•	0.967
	estExt_fgenesh4_pm.C_LG_XVIII0158	aspartate transaminase (EC-2.6.1.1) (466 aa)		•	•	0.967
	gw1.VI.2755.1	aspartate transaminase (EC-2.6.1.1) (397 aa)		•	•	0.967
	estExt_fgenesh4_pg.C_LG_VI1671	aspartate transaminase (EC-2.6.1.1) (442 aa)		•	•	0.966
	eugene3.00012554	aspartate carbamoyltransferase (EC-2.1.3.2) (332 aa)		•	•	0.921
	estExt_fgenesh4_pg.C_LG_XVI0748	adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)	•	•	•	0.918
	gw1.X.3427.1	hypothetical protein (424 aa)	•	•	•	0.915

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		338
PLN02549		578	PLN02549, PLN02549, asparagine synthase (glutamine	0.0
PRK09431		554	PRK09431, asnB, asparagine synthetase B; Provision	0.0
PTZ00077		586	PTZ00077, PTZ00077, asparagine synthetase-like pro	0.0
TIGR01536		466	TIGR01536, asn_synth_AEB, asparagine synthase (glu	1e-108
COG0367		542	COG0367, AsnB, Asparagine synthase (glutamine-hydr	3e-95
cd01991		269	cd01991, Asn_Synthase_B_C, The C-terminal domain o	2e-74
pfam00733		195	pfam00733, Asn_synthase, Asparagine synthase	3e-69
TIGR03104		589	TIGR03104, trio_amidotrans, asparagine synthase fa	7e-30
TIGR03108		628	TIGR03108, eps_aminotran_1, exosortase A system-as	7e-22
cd00712		220	cd00712, AsnB, Glutamine amidotransferases class-I	9e-21
pfam13537		120	pfam13537, GATase_7, Glutamine amidotransferase do	1e-18
cd00352		220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	1e-18
cd01910		224	cd01910, Wali7, This domain is present in Wali7, a	4e-10
pfam12481		228	pfam12481, DUF3700, Aluminium induced protein	6e-10
pfam13522		130	pfam13522, GATase_6, Glutamine amidotransferase do	2e-06
PRK09123		479	PRK09123, PRK09123, amidophosphoribosyltransferase	9e-05
pfam06508		137	pfam06508, ExsB, ExsB	4e-04
pfam00310		223	pfam00310, GATase_2, Glutamine amidotransferases c	8e-04
PRK13981		540	PRK13981, PRK13981, NAD synthetase; Provisional	0.002

>gnl\|CDD\|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

 Score =  705 bits (1822), Expect = 0.0
 Identities = 283/328 (86%), Positives = 308/328 (93%)

Query: 1   MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFP 60
           MLDGMFSFVLLDTRD SFIAARD IG+TPLY+GWGLDGS+WFASEMKAL DDCERF  FP
Sbjct: 116 MLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDCERFEEFP 175

Query: 61  PGHIYSSKQGGLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGG 120
           PGH YSSK GG RRWYNPP +SE IPS PYDPLVLR+AFEKAV+KRLMTDVPFGVLLSGG
Sbjct: 176 PGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGG 235

Query: 121 LDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT 180
           LDSSLVA++A+R+LA+++AA QWG QLHSFC+GLEGSPDLKAAREVADYLGT HHEFHFT
Sbjct: 236 LDSSLVASIAARHLAETKAARQWGQQLHSFCVGLEGSPDLKAAREVADYLGTVHHEFHFT 295

Query: 181 VQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240
           VQEGIDA+E+VIYH+ETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEGSDEIFGGYLYF
Sbjct: 296 VQEGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYF 355

Query: 241 HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWK 300
           HKAPNKEEFH+ETCRKIKALH YDCLRANKSTSAWG+EARVPFLDKEFI+ AMSIDPEWK
Sbjct: 356 HKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLDKEFIDVAMSIDPEWK 415

Query: 301 MVRPDLGRIEKWILRNAFDDDKQPYLPK 328
           M+RP  GRIEKW+LR AFDD++ PYLPK
Sbjct: 416 MIRPGEGRIEKWVLRKAFDDEEDPYLPK 443

Length = 578

>gnl\|CDD\|236513 PRK09431, asnB, asparagine synthetase B; Provisional	Back alignment and domain information

>gnl\|CDD\|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233454 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>gnl\|CDD\|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|238949 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B	Back alignment and domain information

>gnl\|CDD\|216090 pfam00733, Asn_synthase, Asparagine synthase	Back alignment and domain information

>gnl\|CDD\|234108 TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase	Back alignment and domain information

>gnl\|CDD\|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1	Back alignment and domain information

>gnl\|CDD\|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type	Back alignment and domain information

>gnl\|CDD\|222208 pfam13537, GATase_7, Glutamine amidotransferase domain	Back alignment and domain information

>gnl\|CDD\|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)	Back alignment and domain information

>gnl\|CDD\|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum	Back alignment and domain information

>gnl\|CDD\|221596 pfam12481, DUF3700, Aluminium induced protein	Back alignment and domain information

>gnl\|CDD\|222195 pfam13522, GATase_6, Glutamine amidotransferase domain	Back alignment and domain information

>gnl\|CDD\|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|219066 pfam06508, ExsB, ExsB	Back alignment and domain information

>gnl\|CDD\|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II	Back alignment and domain information

>gnl\|CDD\|237577 PRK13981, PRK13981, NAD synthetase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		338
KOG0571		543	consensus Asparagine synthase (glutamine-hydrolyzi	100.0
PLN02549		578	asparagine synthase (glutamine-hydrolyzing)	100.0
PRK09431		554	asnB asparagine synthetase B; Provisional	100.0
PTZ00077		586	asparagine synthetase-like protein; Provisional	100.0
TIGR03104		589	trio_amidotrans asparagine synthase family amidotr	100.0
TIGR01536		467	asn_synth_AEB asparagine synthase (glutamine-hydro	100.0
TIGR03108		628	eps_aminotran_1 exosortase 1 system-associated ami	100.0
COG0367		542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	100.0
cd01991		269	Asn_Synthase_B_C The C-terminal domain of Asparagi	100.0
PF00733		255	Asn_synthase: Asparagine synthase; InterPro: IPR00	100.0
KOG0573		520	consensus Asparagine synthase [Amino acid transpor	100.0
cd01910		224	Wali7 This domain is present in Wali7, a protein o	99.83
cd01909		199	betaLS_CarA_N Glutamine amidotransferases class-II	99.83
cd00712		220	AsnB Glutamine amidotransferases class-II (GATase)	99.7
cd01996		154	Alpha_ANH_like_III This is a subfamily of Adenine	99.58
TIGR03573		343	WbuX N-acetyl sugar amidotransferase. This enzyme	99.56
PF13537		125	GATase_7: Glutamine amidotransferase domain; PDB:	99.52
TIGR00268		252	conserved hypothetical protein TIGR00268. The N-te	99.31
COG1606		269	ATP-utilizing enzymes of the PP-loop superfamily [	99.31
cd03766		181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	99.28
cd00715		252	GPATase_N Glutamine amidotransferases class-II (GN	99.25
PRK14561		194	hypothetical protein; Provisional	99.22
cd00553		248	NAD_synthase NAD+ synthase is a homodimer, which c	99.21
PRK06388		474	amidophosphoribosyltransferase; Provisional	99.2
PRK07847		510	amidophosphoribosyltransferase; Provisional	99.2
PRK09123		479	amidophosphoribosyltransferase; Provisional	99.2
PRK08341		442	amidophosphoribosyltransferase; Provisional	99.19
PRK08525		445	amidophosphoribosyltransferase; Provisional	99.17
PRK07631		475	amidophosphoribosyltransferase; Provisional	99.15
PRK13980		265	NAD synthetase; Provisional	99.15
PRK00876		326	nadE NAD synthetase; Reviewed	99.15
PRK07272		484	amidophosphoribosyltransferase; Provisional	99.14
COG0603		222	Predicted PP-loop superfamily ATPase [General func	99.14
TIGR00552		250	nadE NAD+ synthetase. NAD+ synthetase is a nearly	99.14
cd01990		202	Alpha_ANH_like_I This is a subfamily of Adenine nu	99.1
cd00714		215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	99.1
PRK07349		500	amidophosphoribosyltransferase; Provisional	99.09
cd00352		220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.08
PRK06781		471	amidophosphoribosyltransferase; Provisional	99.08
PF06508		209	QueC: Queuosine biosynthesis protein QueC; InterPr	99.07
cd01907		249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	99.07
PLN02440		479	amidophosphoribosyltransferase	99.06
PRK11106		231	queuosine biosynthesis protein QueC; Provisional	99.06
PF12481		228	DUF3700: Aluminium induced protein ; InterPro: IPR	99.05
TIGR01134		442	purF amidophosphoribosyltransferase. Alternate nam	99.03
PRK00143		346	mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	99.01
cd01998		349	tRNA_Me_trans tRNA methyl transferase. This family	98.99
cd01993		185	Alpha_ANH_like_II This is a subfamily of Adenine n	98.99
PRK05793		469	amidophosphoribosyltransferase; Provisional	98.98
PRK00331		604	glucosamine--fructose-6-phosphate aminotransferase	98.97
PF03054		356	tRNA_Me_trans: tRNA methyl transferase; InterPro:	98.97
PRK09246		501	amidophosphoribosyltransferase; Provisional	98.95
COG0482		356	TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid	98.95
PTZ00323		294	NAD+ synthase; Provisional	98.94
PRK14665		360	mnmA tRNA-specific 2-thiouridylase MnmA; Provision	98.94
PF02540		242	NAD_synthase: NAD synthase; InterPro: IPR022310 NA	98.93
PRK04527		400	argininosuccinate synthase; Provisional	98.92
TIGR01135		607	glmS glucosamine--fructose-6-phosphate aminotransf	98.89
TIGR00884		311	guaA_Cterm GMP synthase (glutamine-hydrolyzing), C	98.88
PRK00509		399	argininosuccinate synthase; Provisional	98.86
PRK00919		307	GMP synthase subunit B; Validated	98.85
PRK00768		268	nadE NAD synthetase; Reviewed	98.84
PRK14664		362	tRNA-specific 2-thiouridylase MnmA; Provisional	98.83
PRK13981		540	NAD synthetase; Provisional	98.82
TIGR00420		352	trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me	98.82
cd01712		177	ThiI ThiI is required for thiazole synthesis in th	98.77
TIGR00364		201	exsB protein. This protein family is represented b	98.76
PTZ00295		640	glucosamine-fructose-6-phosphate aminotransferase;	98.76
PRK08349		198	hypothetical protein; Validated	98.75
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	98.75
PRK10696		258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	98.74
PRK13820		394	argininosuccinate synthase; Provisional	98.71
cd01999		385	Argininosuccinate_Synthase Argininosuccinate synth	98.68
cd01997		295	GMP_synthase_C The C-terminal domain of GMP synthe	98.67
PRK00074		511	guaA GMP synthase; Reviewed	98.64
PLN00200		404	argininosuccinate synthase; Provisional	98.64
COG0037		298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	98.61
cd01986		103	Alpha_ANH_like Adenine nucleotide alpha hydrolases	98.61
PRK01565		394	thiamine biosynthesis protein ThiI; Provisional	98.6
PLN02347		536	GMP synthetase	98.59
TIGR00032		394	argG argininosuccinate synthase. argG in bacteria,	98.59
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	98.58
cd01992		185	PP-ATPase N-terminal domain of predicted ATPase of	98.57
PRK02628		679	nadE NAD synthetase; Reviewed	98.54
COG0171		268	NadE NAD synthase [Coenzyme metabolism]	98.53
KOG2805		377	consensus tRNA (5-methylaminomethyl-2-thiouridylat	98.52
TIGR00342		371	thiazole biosynthesis/tRNA modification protein Th	98.46
cd01995		169	ExsB ExsB is a transcription regulator related pro	98.45
PRK08384		381	thiamine biosynthesis protein ThiI; Provisional	98.41
cd01994		194	Alpha_ANH_like_IV This is a subfamily of Adenine n	98.39
cd01713		173	PAPS_reductase This domain is found in phosphoaden	98.38
cd00713		413	GltS Glutamine amidotransferases class-II (Gn-AT),	98.37
PRK05253		301	sulfate adenylyltransferase subunit 2; Provisional	98.36
TIGR03679		218	arCOG00187 arCOG00187 universal archaeal metal-bin	98.34
COG2117		198	Predicted subunit of tRNA(5-methylaminomethyl-2-th	98.32
PRK01269		482	tRNA s(4)U8 sulfurtransferase; Provisional	98.31
PRK05370		447	argininosuccinate synthase; Validated	98.24
PF02568		197	ThiI: Thiamine biosynthesis protein (ThiI); InterP	98.21
PF00764		388	Arginosuc_synth: Arginosuccinate synthase; InterPr	98.2
COG1365		255	Predicted ATPase (PP-loop superfamily) [General fu	98.17
PRK10660		436	tilS tRNA(Ile)-lysidine synthetase; Provisional	98.17
PRK08576		438	hypothetical protein; Provisional	98.15
PLN02339		700	NAD+ synthase (glutamine-hydrolysing)	98.13
PTZ00394		670	glucosamine-fructose-6-phosphate aminotransferase;	98.03
COG0137		403	ArgG Argininosuccinate synthase [Amino acid transp	98.03
PLN02981		680	glucosamine:fructose-6-phosphate aminotransferase	97.99
TIGR02039		294	CysD sulfate adenylyltransferase, small subunit. I	97.88
COG0034		470	PurF Glutamine phosphoribosylpyrophosphate amidotr	97.87
KOG0572		474	consensus Glutamine phosphoribosylpyrophosphate am	97.68
PRK02090		241	phosphoadenosine phosphosulfate reductase; Provisi	97.66
COG0519		315	GuaA GMP synthase, PP-ATPase domain/subunit [Nucle	97.6
PRK12563		312	sulfate adenylyltransferase subunit 2; Provisional	97.46
PF01507		174	PAPS_reduct: Phosphoadenosine phosphosulfate reduc	97.41
COG0301		383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	97.41
PRK08557		417	hypothetical protein; Provisional	97.37
PRK11750		1485	gltB glutamate synthase subunit alpha; Provisional	97.36
KOG1706		412	consensus Argininosuccinate synthase [Amino acid t	97.3
PRK13795		636	hypothetical protein; Provisional	97.2
TIGR00289		222	conserved hypothetical protein TIGR00289. Homologo	97.04
TIGR03442		251	conserved hypothetical protein TIGR03442. Members	97.02
cd01908		257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	97.01
PRK13794		479	hypothetical protein; Provisional	96.96
TIGR00434		212	cysH phosophoadenylyl-sulfate reductase (thioredox	96.92
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	96.86
COG0175		261	CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr	96.44
TIGR02057		226	PAPS_reductase phosphoadenosine phosphosulfate red	96.41
TIGR03183		447	DNA_S_dndC putative sulfurtransferase DndC. Member	96.38
PRK06850		507	hypothetical protein; Provisional	96.38
KOG1622		552	consensus GMP synthase [Nucleotide transport and m	96.37
COG3969		407	Predicted phosphoadenosine phosphosulfate sulfotra	95.96
PF09147		201	DUF1933: Domain of unknown function (DUF1933); Int	95.9
COG2102		223	Predicted ATPases of PP-loop superfamily [General	95.29
PF01902		218	ATP_bind_4: ATP-binding region; InterPro: IPR00276	95.04
TIGR00290		223	MJ0570_dom MJ0570-related uncharacterized domain.	94.94
COG0449		597	GlmS Glucosamine 6-phosphate synthetase, contains	94.92
COG0367		542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	94.32
KOG2303		706	consensus Predicted NAD synthase, contains CN hydr	92.25
KOG2840		347	consensus Uncharacterized conserved protein with s	84.86

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=7.8e-79  Score=547.80  Aligned_cols=333  Identities=69%  Similarity=1.140  Sum_probs=313.8

Q ss_pred             ceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEeeCCCCC
Q 019615            2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCY   81 (338)
Q Consensus         2 l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~   81 (338)
                      |+|||||+++|...++++++||++|++||||.++.++.++||||+|+|-..|+.|...||||++..+.+.+.||++|+|.
T Consensus       117 LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~  196 (543)
T KOG0571|consen  117 LDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWF  196 (543)
T ss_pred             hhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhhhceeecCCcceeecccccccCCCCchhh
Confidence            89999999999999999999999999999999988899999999999999999999999999999988889999999988


Q ss_pred             CCCCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhhhhcCCCcceeeccCCCCchHH
Q 019615           82 SEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLK  161 (338)
Q Consensus        82 ~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~  161 (338)
                      ....++.......+|+.|.+||++||.+++|+|++||||||||+||+++++.+.+.+.  +.|.++++|++|+++++|..
T Consensus       197 ~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL~  274 (543)
T KOG0571|consen  197 DENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDLL  274 (543)
T ss_pred             hccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHHHHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhHH
Confidence            7666766666677999999999999999999999999999999999999998765321  22468999999999999999


Q ss_pred             HHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCcccc
Q 019615          162 AAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH  241 (338)
Q Consensus       162 ~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~  241 (338)
                      .|++||+++|+.||++.++.++-+++++++++++|+++.+++++++++|+++++++++|+++||||+|+||+||||-+|+
T Consensus       275 aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIRastpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYfh  354 (543)
T KOG0571|consen  275 AARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIRASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYFH  354 (543)
T ss_pred             HHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEecCCchHHHHHHHHhcceEEEEecCCchhhhcceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHhhcccC
Q 019615          242 KAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDD  321 (338)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~~  321 (338)
                      ++|+...|.+|..++++.||.+|++|+|+.+|+||+|+|+||||++++++|++||+++|+.....+..+||+||+||..+
T Consensus       355 ~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFLDk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd~~  434 (543)
T KOG0571|consen  355 KAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFLDKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFDTT  434 (543)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccccHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999987544678999999999999


Q ss_pred             CCCCCCCcccceecc
Q 019615          322 KQPYLPKVSHFLIMN  336 (338)
Q Consensus       322 ~~~~lP~~i~~~~~~  336 (338)
                      .+|+||+.|-||.-.
T Consensus       435 ~~pyLP~eilwrqke  449 (543)
T KOG0571|consen  435 EKPYLPDEILWRQKE  449 (543)
T ss_pred             CCCcChHHHHHHHHh
Confidence            999999999998654

>PLN02549 asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>PRK09431 asnB asparagine synthetase B; Provisional	Back alignment and domain information

>PTZ00077 asparagine synthetase-like protein; Provisional	Back alignment and domain information

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase	Back alignment and domain information

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1	Back alignment and domain information

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B	Back alignment and domain information

>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO)	Back alignment and domain information

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]	Back alignment and domain information

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum	Back alignment and domain information

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type	Back alignment and domain information

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type	Back alignment and domain information

>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>TIGR03573 WbuX N-acetyl sugar amidotransferase	Back alignment and domain information

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A	Back alignment and domain information

>TIGR00268 conserved hypothetical protein TIGR00268	Back alignment and domain information

>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

>cd03766 Gn_AT_II_novel Gn_AT_II_novel	Back alignment and domain information

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type	Back alignment and domain information

>PRK14561 hypothetical protein; Provisional	Back alignment and domain information

>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	Back alignment and domain information

>PRK06388 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK07847 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK09123 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK08341 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK08525 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK07631 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK13980 NAD synthetase; Provisional	Back alignment and domain information

>PRK00876 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PRK07272 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]	Back alignment and domain information

>TIGR00552 nadE NAD+ synthetase	Back alignment and domain information

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type	Back alignment and domain information

>PRK07349 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)	Back alignment and domain information

>PRK06781 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome	Back alignment and domain information

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	Back alignment and domain information

>PLN02440 amidophosphoribosyltransferase	Back alignment and domain information

>PRK11106 queuosine biosynthesis protein QueC; Provisional	Back alignment and domain information

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length	Back alignment and domain information

>TIGR01134 purF amidophosphoribosyltransferase	Back alignment and domain information

>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	Back alignment and domain information

>cd01998 tRNA_Me_trans tRNA methyl transferase	Back alignment and domain information

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PRK05793 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed	Back alignment and domain information

>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	Back alignment and domain information

>PRK09246 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00323 NAD+ synthase; Provisional	Back alignment and domain information

>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6	Back alignment and domain information

>PRK04527 argininosuccinate synthase; Provisional	Back alignment and domain information

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	Back alignment and domain information

>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit	Back alignment and domain information

>PRK00509 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK00919 GMP synthase subunit B; Validated	Back alignment and domain information

>PRK00768 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>PRK13981 NAD synthetase; Provisional	Back alignment and domain information

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	Back alignment and domain information

>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway	Back alignment and domain information

>TIGR00364 exsB protein	Back alignment and domain information

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional	Back alignment and domain information

>PRK08349 hypothetical protein; Validated	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	Back alignment and domain information

>PRK13820 argininosuccinate synthase; Provisional	Back alignment and domain information

>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase	Back alignment and domain information

>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase	Back alignment and domain information

>PRK00074 guaA GMP synthase; Reviewed	Back alignment and domain information

>PLN00200 argininosuccinate synthase; Provisional	Back alignment and domain information

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases	Back alignment and domain information

>PRK01565 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>PLN02347 GMP synthetase	Back alignment and domain information

>TIGR00032 argG argininosuccinate synthase	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK02628 nadE NAD synthetase; Reviewed	Back alignment and domain information

>COG0171 NadE NAD synthase [Coenzyme metabolism]	Back alignment and domain information

>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI	Back alignment and domain information

>cd01995 ExsB ExsB is a transcription regulator related protein	Back alignment and domain information

>PRK08384 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type	Back alignment and domain information

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein	Back alignment and domain information

>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional	Back alignment and domain information

>PRK05370 argininosuccinate synthase; Validated	Back alignment and domain information

>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell	Back alignment and domain information

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6	Back alignment and domain information

>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]	Back alignment and domain information

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional	Back alignment and domain information

>PRK08576 hypothetical protein; Provisional	Back alignment and domain information

>PLN02339 NAD+ synthase (glutamine-hydrolysing)	Back alignment and domain information

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional	Back alignment and domain information

>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase	Back alignment and domain information

>TIGR02039 CysD sulfate adenylyltransferase, small subunit	Back alignment and domain information

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	Back alignment and domain information

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional	Back alignment and domain information

>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK12563 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]	Back alignment and domain information

>PRK08557 hypothetical protein; Provisional	Back alignment and domain information

>PRK11750 gltB glutamate synthase subunit alpha; Provisional	Back alignment and domain information

>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK13795 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00289 conserved hypothetical protein TIGR00289	Back alignment and domain information

>TIGR03442 conserved hypothetical protein TIGR03442	Back alignment and domain information

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	Back alignment and domain information

>PRK13794 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin)	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent	Back alignment and domain information

>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC	Back alignment and domain information

>PRK06850 hypothetical protein; Provisional	Back alignment and domain information

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]	Back alignment and domain information

>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]	Back alignment and domain information

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices	Back alignment and domain information

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]	Back alignment and domain information

>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal	Back alignment and domain information

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain	Back alignment and domain information

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]	Back alignment and domain information

>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		338
1ct9_A		553	Crystal Structure Of Asparagine Synthetase B From E		2e-98
1q15_A		503	Carbapenam Synthetase Length = 503		8e-10
1jgt_A		513	Crystal Structure Of Beta-Lactam Synthetase Length		4e-07

>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From Escherichia Coli Length = 553

Back alignment and structure

Iteration: 1

Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 178/331 (53%), Positives = 229/331 (69%), Gaps = 11/331 (3%) Query: 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPP 61 L GMF+F L D+ +++ RD +G+ PLYMG+ G ++ ASEMKAL C FP Sbjct: 117 LQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPA 176 Query: 62 GHIYSSKQGGLRRWYNPPCYS-EQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFXXXXXXX 120 G S+ G +R +Y+ + + + N D LR+A E +V LM+DVP+ Sbjct: 177 GSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGG 236 Query: 121 XXXXXXAAVASRYLA----DSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176 +A+ +Y A D E + W QLHSF +GL GSPDLKAA+EVA++LGT HHE Sbjct: 237 LDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHE 296 Query: 177 FHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGG 236 HFTVQEG+DA+ +VIYHIETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FGG Sbjct: 297 IHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGG 356 Query: 237 YLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSID 296 YLYFHKAPN +E H+ET RK+ ALH+YDC RANK+ SAWGVEARVPFLDK+F++ AM I+ Sbjct: 357 YLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRIN 416 Query: 297 PEWKMVRPDLGRIEKWILRNAFDDDKQPYLP 327 P+ KM G++EK ILR F + YLP Sbjct: 417 PQDKMCGN--GKMEKHILRECF----EAYLP 441

PyMOL of 1ct9

>pdb|1Q15|A Chain A, Carbapenam Synthetase Length = 503

Back alignment and structure

>pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase Length = 513

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		338
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	1e-139
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	1e-135
1q15_A		503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	1e-132
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3k32_A		203	Uncharacterized protein MJ0690; predicted subunit	4e-10
3bl5_A		219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	4e-04
1ao0_A		459	Glutamine phosphoribosylpyrophosphate amidotransfe	6e-04
3sdb_A		680	Glutamine-dependent NAD(+) synthetase; glutamine-a	6e-04

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553	Back alignment and structure

 Score =  406 bits (1044), Expect = e-139
 Identities = 189/333 (56%), Positives = 242/333 (72%), Gaps = 11/333 (3%)

Query: 1   MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFP 60
            L GMF+F L D+   +++  RD +G+ PLYMG+   G ++ ASEMKAL   C     FP
Sbjct: 116 DLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFP 175

Query: 61  PGHIYSSKQGGLRRWYNPPCYS-EQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSG 119
            G    S+ G +R +Y+   +  + +  N  D   LR+A E +V   LM+DVP+GVLLSG
Sbjct: 176 AGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSG 235

Query: 120 GLDSSLVAAVASRYLA----DSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHH 175
           GLDSS+++A+  +Y A    D E +  W  QLHSF +GL GSPDLKAA+EVA++LGT HH
Sbjct: 236 GLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHH 295

Query: 176 EFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235
           E HFTVQEG+DA+ +VIYHIETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FG
Sbjct: 296 EIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFG 355

Query: 236 GYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSI 295
           GYLYFHKAPN +E H+ET RK+ ALH+YDC RANK+ SAWGVEARVPFLDK+F++ AM I
Sbjct: 356 GYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRI 415

Query: 296 DPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPK 328
           +P+ KM     G++EK ILR  F+     YLP 
Sbjct: 416 NPQDKM--CGNGKMEKHILRECFEA----YLPA 442

PyMOL of 1ct9

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Length = 513	Back alignment and structure

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Length = 503	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Length = 203	Back alignment and structure

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Length = 219	Back alignment and structure

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Length = 459	Back alignment and structure

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		338
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	100.0
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	100.0
1q15_A		503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	100.0
1ao0_A		459	Glutamine phosphoribosylpyrophosphate amidotransfe	99.54
1xff_A		240	D-fructose-6-, glucosamine--fructose-6-phosphate a	99.29
2e18_A		257	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.28
1xng_A		268	NH(3)-dependent NAD(+) synthetase; amidotransferas	99.25
1kqp_A		271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	99.24
3bl5_A		219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	99.24
3n05_A		590	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.17
3k32_A		203	Uncharacterized protein MJ0690; predicted subunit	99.14
1wxi_A		275	NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l	99.09
3p52_A		249	NH(3)-dependent NAD(+) synthetase; structural geno	99.08
1ecf_A		504	Glutamine phosphoribosylpyrophosphate amidotransf;	99.07
3fiu_A		249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	99.07
2pg3_A		232	Queuosine biosynthesis protein QUEC; YP_049261.1,	99.01
2bpl_A		608	Glucosamine--fructose-6-phosphate aminotransferase	98.96
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	98.92
2dpl_A		308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	98.86
2nz2_A		413	Argininosuccinate synthase; amino-acid biosynthesi	98.85
1vl2_A		421	Argininosuccinate synthase; TM1780, structural gen	98.82
2hma_A		376	Probable tRNA (5-methylaminomethyl-2-thiouridylat	98.82
1kor_A		400	Argininosuccinate synthetase; ligase, riken struct	98.8
3q4g_A		279	NH(3)-dependent NAD(+) synthetase; structural geno	98.8
2der_A		380	TRNA-specific 2-thiouridylase MNMA; protein-RNA co	98.71
3mdn_A		274	Glutamine aminotransferase class-II domain protei;	98.7
1k92_A		455	Argininosuccinate synthase, argininosuccinate SY;	98.63
3dpi_A		285	NAD+ synthetase; ssgcid, decode, structural genomi	98.63
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	98.59
3tqi_A		527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	98.58
1gpm_A		525	GMP synthetase, XMP aminase; class I glutamine ami	98.53
4f4h_A		565	Glutamine dependent NAD+ synthetase; structural ge	98.49
1sur_A		215	PAPS reductase; assimilatory sulfate reduction, 3-	98.48
3sdb_A		680	Glutamine-dependent NAD(+) synthetase; glutamine-a	98.48
2ywb_A		503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	98.47
3ilv_A		634	Glutamine-dependent NAD(+) synthetase; protein str	98.4
2c5s_A		413	THII, probable thiamine biosynthesis protein THII;	98.39
2vxo_A		697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	98.37
1ni5_A		433	Putative cell cycle protein MESJ; structural genom	98.34
3uow_A		556	GMP synthetase; structural genomics consortium, SG	98.26
2o8v_A		252	Phosphoadenosine phosphosulfate reductase; disulfi	98.13
1zun_A		325	Sulfate adenylyltransferase subunit 2; beta barrel	98.13
2oq2_A		261	Phosphoadenosine phosphosulfate reductase; sulfate	97.97
1vbk_A		307	Hypothetical protein PH1313; structural genomics,	97.81
3rjz_A		237	N-type ATP pyrophosphatase superfamily; structural	97.77
1ea0_A		1479	Glutamate synthase [NADPH] large chain; oxidoreduc	97.56
1ofd_A		1520	Ferredoxin-dependent glutamate synthase 2; oxidore	97.51
1te5_A		257	Conserved hypothetical protein; glutamine amidotra	97.12
2goy_A		275	Adenosine phosphosulfate reductase; iron sulfur cl	97.04
2wsi_A		306	FAD synthetase; transferase, nucleotidyltransferas	96.97
3fwk_A		308	FMN adenylyltransferase; FAD biosynthesis, alpha/b	96.0

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1	Back alignment and structure

Probab=100.00  E-value=2.3e-69  Score=531.53  Aligned_cols=332  Identities=57%  Similarity=0.970  Sum_probs=287.7

Q ss_pred             CceeeEEEEEEECCCCEEEEEEccCCCcceEEEEecCCeEEEecccchhhhccCCcEEeCCCcEEEecCCeEEEeeCCCC
Q 019615            1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC   80 (338)
Q Consensus         1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~   80 (338)
                      +|+|||||++||.++++++++||++|+|||||.+..++.++||||+++|...+++|++|||||++.+++++.++||++.+
T Consensus       116 ~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~  195 (553)
T 1ct9_A          116 DLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDW  195 (553)
T ss_dssp             GCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGG
T ss_pred             hCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCc
Confidence            58999999999998899999999999999999984357899999999999999999999999999887777899999875


Q ss_pred             CCC-CCCCCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhhhh----hhcCCCcceeeccCC
Q 019615           81 YSE-QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAA----CQWGSQLHSFCIGLE  155 (338)
Q Consensus        81 ~~~-~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~----~~~~~~~~~~t~~~~  155 (338)
                      ... ..++.++.+++++++|.+||++|+.+|+|+|++||||+|||+|++++++...+....    ..+..++++||++++
T Consensus       196 ~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~  275 (553)
T 1ct9_A          196 FDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP  275 (553)
T ss_dssp             GSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC
Confidence            431 223557789999999999999999999999999999999999999999876421000    000013899999998


Q ss_pred             CCchHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhccc
Q 019615          156 GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG  235 (338)
Q Consensus       156 ~~~e~~~A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~  235 (338)
                      +++|..+|+++|+++|++|+++.++.+++.+.+++++++.++|+.+++++.+++|++++.+++.|++|++||+||||+|+
T Consensus       276 ~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfg  355 (553)
T 1ct9_A          276 GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFG  355 (553)
T ss_dssp             TCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHT
T ss_pred             CCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHcCCeEEEECCCchhccc
Confidence            88899999999999999999999999999899999999888876544545678899999999999999999999999999


Q ss_pred             CCcccccCCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHH
Q 019615          236 GYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILR  315 (338)
Q Consensus       236 Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR  315 (338)
                      ||.+|+..|....|.+++.+++.+++.++++|.||++|++|+|+|+||||++|||||++||+++|+.++  +..+|+|||
T Consensus       356 GY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R~PfLD~~lve~a~~lP~~~k~~~~--g~~~K~iLR  433 (553)
T 1ct9_A          356 GYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGN--GKMEKHILR  433 (553)
T ss_dssp             CSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEECGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHH
T ss_pred             CcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeECCcCCHHHHHHHhcCCHHHhccCC--CCcchHHHH
Confidence            999998888877788888888888998999999999999999999999999999999999999999862  136899999


Q ss_pred             hhcccCCCCCCCCcccceeccCC
Q 019615          316 NAFDDDKQPYLPKVSHFLIMNMF  338 (338)
Q Consensus       316 ~a~~~~~~~~lP~~i~~~~~~~~  338 (338)
                      +||++    +||++|.||....|
T Consensus       434 ~a~~~----~LP~~i~~R~K~~f  452 (553)
T 1ct9_A          434 ECFEA----YLPASVAWRQKEQF  452 (553)
T ss_dssp             HHHGG----GSCHHHHTCCCCTT
T ss_pred             HHHHh----hCCHHHHcCCCcCC
Confidence            99999    99999999975443

PyMOL of 1ct9

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*	Back alignment and structure

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*	Back alignment and structure

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*	Back alignment and structure

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*	Back alignment and structure

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}	Back alignment and structure

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A	Back alignment and structure

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A	Back alignment and structure

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}	Back alignment and structure

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}	Back alignment and structure

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*	Back alignment and structure

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0	Back alignment and structure

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*	Back alignment and structure

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}	Back alignment and structure

>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1	Back alignment and structure

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*	Back alignment and structure

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*	Back alignment and structure

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A	Back alignment and structure

>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}	Back alignment and structure

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1	Back alignment and structure

>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}	Back alignment and structure

>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*	Back alignment and structure

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0	Back alignment and structure

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*	Back alignment and structure

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}	Back alignment and structure

>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*	Back alignment and structure

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0	Back alignment and structure

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}	Back alignment and structure

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}	Back alignment and structure

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1	Back alignment and structure

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}	Back alignment and structure

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2	Back alignment and structure

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*	Back alignment and structure

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*	Back alignment and structure

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}	Back alignment and structure

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1	Back alignment and structure

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}	Back alignment and structure

>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}	Back alignment and structure

>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2	Back alignment and structure

>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}	Back alignment and structure

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A	Back alignment and structure

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*	Back alignment and structure

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*	Back alignment and structure

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1	Back alignment and structure

>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}	Back alignment and structure

>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		338
d1ct9a1		324	c.26.2.1 (A:193-516) Asparagine synthetase B, C-te	7e-53
d1q15a1		296	c.26.2.1 (A:206-501) beta-Lactam synthetase {Pecto	8e-35
d1jgta1		299	c.26.2.1 (A:210-508) beta-Lactam synthetase {Strep	1e-30
d1ct9a2		192	d.153.1.1 (A:1-192) Asparagine synthetase B, N-ter	8e-16
d1xffa_		238	d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N	2e-05
d1q15a2		204	d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectob	6e-05
d1gph12		234	d.153.1.1 (1:1-234) Glutamine PRPP amidotransferas	0.001

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 324	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Asparagine synthetase B, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  175 bits (443), Expect = 7e-53
 Identities = 156/259 (60%), Positives = 197/259 (76%), Gaps = 10/259 (3%)

Query: 73  RRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASR 132
           R W++     + +  N  D   LR+A E +V   LM+DVP+GVLLSGGLDSS+++A+  +
Sbjct: 1   RDWFDY----DAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKK 56

Query: 133 YLA----DSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188
           Y A    D E +  W  QLHSF +GL GSPDLKAA+EVA++LGT HHE HFTVQEG+DA+
Sbjct: 57  YAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAI 116

Query: 189 EEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEE 248
            +VIYHIETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FGGYLYFHKAPN +E
Sbjct: 117 RDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKE 176

Query: 249 FHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGR 308
            H+ET RK+ ALH+YDC RANK+ SAWGVEARVPFLDK+F++ AM I+P+ KM      +
Sbjct: 177 LHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNG--K 234

Query: 309 IEKWILRNAFDDDKQPYLP 327
           +EK ILR  F+      + 
Sbjct: 235 MEKHILRECFEAYLPASVA 253

PyMOL of d1ct9a1

>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Length = 296	Back information, alignment and structure

>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Length = 299	Back information, alignment and structure

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 192	Back information, alignment and structure

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238	Back information, alignment and structure

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Length = 204	Back information, alignment and structure

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 234	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		338
d1ct9a1		324	Asparagine synthetase B, C-terminal domain {Escher	100.0
d1jgta1		299	beta-Lactam synthetase {Streptomyces clavuligerus	100.0
d1q15a1		296	beta-Lactam synthetase {Pectobacterium carotovorum	100.0
d1ct9a2		192	Asparagine synthetase B, N-terminal domain {Escher	99.84
d1jgta2		206	beta-Lactam synthetase {Streptomyces clavuligerus	99.75
d1q15a2		204	beta-Lactam synthetase {Pectobacterium carotovorum	99.54
d1gph12		234	Glutamine PRPP amidotransferase, N-terminal domain	99.25
d1xnga1		255	NH3-dependent NAD+-synthetase {Helicobacter pylori	98.88
d2c5sa1		218	Thiamine biosynthesis protein ThiI, C-terminal dom	98.67
d1wy5a1		216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	98.63
d1kqpa_		271	NH3-dependent NAD+-synthetase {Bacillus subtilis [	98.57
d1ecfa2		249	Glutamine PRPP amidotransferase, N-terminal domain	98.57
d1xffa_		238	Glucosamine 6-phosphate synthase, N-terminal domai	98.53
d1ni5a1		227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	98.44
d1wxia1		274	NH3-dependent NAD+-synthetase {Escherichia coli [T	98.36
d1gpma1		197	GMP synthetase, central domain {Escherichia coli [	98.35
d1j20a1		165	Argininosuccinate synthetase, N-terminal domain {T	98.13
d2pg3a1		230	Queuosine biosynthesis protein QueC {Erwinia carot	98.02
d1vl2a1		168	Argininosuccinate synthetase, N-terminal domain {T	97.97
d1k92a1		188	Argininosuccinate synthetase, N-terminal domain {E	97.87
d1zuna1		211	Sulfate adenylyltransferase subunit 2, CysD {Pseud	97.76
d1sura_		215	Phosphoadenylyl sulphate (PAPS) reductase {Escheri	97.36
d1ofda3		430	Alpha subunit of glutamate synthase, N-terminal do	97.12
d1ea0a3		422	Alpha subunit of glutamate synthase, N-terminal do	96.51
d2d13a1		226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	96.5
d1vbka1		132	Hypothetical protein PH1313, C-terminal domain {Ar	96.34
d1te5a_		253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	82.35

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Asparagine synthetase B, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-48  Score=359.14  Aligned_cols=246  Identities=64%  Similarity=1.047  Sum_probs=205.9

Q ss_pred             CCCccHHHHHHHHHHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhchhh----hhhhcCCCcceeeccCCCCchHHH
Q 019615           87 SNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSE----AACQWGSQLHSFCIGLEGSPDLKA  162 (338)
Q Consensus        87 ~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~----~~~~~~~~~~~~t~~~~~~~e~~~  162 (338)
                      +.....++++++|.+||+.|+++|+|||++||||+|||+|++++++......    ........+.++++++++.+|..+
T Consensus        11 ~~~~~~eel~~~l~~sV~~rl~sDvpig~~LSGGlDSs~Iaal~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~~   90 (324)
T d1ct9a1          11 DNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKA   90 (324)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEESTTCHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHhccCCcEEEEecchHHHHHHHHHHHHHHhhcccccccccccCCCcccceeccCCCchHHH
Confidence            4455689999999999999999999999999999999999999988753210    000112356789999999999999


Q ss_pred             HHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCccccCchHHHHHHHHHhhhCCCeEEEecCchhhcccCCccccc
Q 019615          163 AREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHK  242 (338)
Q Consensus       163 A~~~a~~lg~~~~~v~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vvltG~GgDelf~Gy~~~~~  242 (338)
                      |+++|+++|.+|+++.++.+++.+.+++++++.+.++.+......+.+.+++.+++.|++|+|||+||||+||||.+|+.
T Consensus        91 a~~~a~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~~~kV~LsG~GaDElfgGY~~~~~  170 (324)
T d1ct9a1          91 AQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHK  170 (324)
T ss_dssp             HHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHTCSGGGGG
T ss_pred             HHHHHhhccccceEEEEecchHHHHHHHHHHHHhhcCCcccccccHHHHHHHHHhcCCCeEeeccccchhhhhcchhhhc
Confidence            99999999999999999999988999999998876554433345677889999989999999999999999999999887


Q ss_pred             CCChhHHHHHHHHHHHhcccccccchhhhhhhcCccccCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHhhcccCC
Q 019615          243 APNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDK  322 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~gve~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~ilR~a~~~~~  322 (338)
                      ......+.+........++.+.+.|.|+++|++|+|+|+||||++||+|+++||+++|+..+  +..+|+|||++|++  
T Consensus       171 ~~~~~~~~~~~~~~~~~l~~~~l~~~dr~~m~~g~E~R~PfLD~~lve~~~~lp~~~k~~~~--~~~~K~iLR~a~~~--  246 (324)
T d1ct9a1         171 APNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGN--GKMEKHILRECFEA--  246 (324)
T ss_dssp             CCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEECGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHHHHHGG--
T ss_pred             ccchHHHhhhhhhHHHHhhhhhhHHHHHHHHhcCccccHHHhhHHHHHHHHhCCHHHhcchh--hhhhHHHHHHHHHh--
Confidence            76666666666666777888888999999999999999999999999999999999998653  24579999999999  


Q ss_pred             CCCCCCcccceeccCC
Q 019615          323 QPYLPKVSHFLIMNMF  338 (338)
Q Consensus       323 ~~~lP~~i~~~~~~~~  338 (338)
                        +||++|.||...+|
T Consensus       247 --~lP~~i~~r~K~~f  260 (324)
T d1ct9a1         247 --YLPASVAWRQKEQF  260 (324)
T ss_dssp             --GSCHHHHTCCCCTT
T ss_pred             --cchhhhhcccccCC
Confidence              99999999987665

PyMOL of d1ct9a1

>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}	Back information, alignment and structure

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}	Back information, alignment and structure

>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}	Back information, alignment and structure

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}	Back information, alignment and structure

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure