Citrus Sinensis ID: 019619

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTPSPNNSDSSEPRGVIAGIMPMPNDHDIMTMCMDSSSSSSTSIQTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHccccccccccEEcc
Coil and Loop (DISEMBL)
mrkpdlmgkerlvngsniNAKANKLrkglwspeedDKLIKYMLTngqgcwsdIARNAGLQRCGKSCRLRWINylrpdlkrgafspqEEELIIHLHSILGNRWSQIaarlpgrtdneiKNFWNSTLKKILknnpnaptpspnnsdsseprgviagimpmpndhdimtmcmdsssssstsIQTMVTsnnsqlidpfsmldtrydmtsasclfnnmptctaqvdhtgdglfyedygilepskmglegdlslpplesrsieennsnaaknnhnynvdlkgnnnnhytnnscfnntidqgIKVGDmlglennwqgenlrvgewdlegfmdnissfpfldfqve
Flexible Loop (DISEMBL)
mrkpdlmgkerlvngsninakanklrkglwspeEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNnpnaptpspnnsdssePRGVIAGIMPMPNDHDIMTMCMDSSSSSSTSIQTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE
Low Complexity Region (SEG)
MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKnnpnaptpspnnsdssepRGVIAGIMPMPNDHDImtmcmdsssssstsiqtmvtsNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEGDLSLPPLESRSIEEnnsnaaknnhnynVDLKGNNNNHYTNNSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE
Disordered region (IsUnstruct)
****************************LW****DDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI*************************************************************LIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILE*************************************L*GNNNNHYTNNSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDF***
Disordered Region (DISOPRED)
**********************NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK****************************************************************************************************LFYEDYGILEPSKMGLEGDL**************************************NSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE
Disordered Region (DISEMBL)
MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPN************EPRGVIAGIMPMPNDHDIMTMCM*************VTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE
Disordered Region (DISPRO)
***************SNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNN************************************************************PFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEGDLSL******************NHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTPSPNNSDSSEPRGVIAGIMPMPNDHDIMTMCMDSSSSSSTSIQTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q9LXV2	280	Transcription factor MYB4	no	no	0.363	0.439	0.769	5e-54
Q8LPH6	352	Transcription factor MYB8	no	no	0.337	0.323	0.754	4e-47
P20027	302	Myb-related protein Hv33	N/A	no	0.322	0.360	0.715	7e-43
O49608	274	Transcription factor MYB3	no	no	0.384	0.474	0.582	1e-40
P81393	232	Myb-related protein 308 O	N/A	no	0.381	0.556	0.558	5e-39
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.310	0.357	0.695	5e-39
Q9SZP1	282	Transcription repressor M	no	no	0.328	0.393	0.630	5e-39
Q9S9K9	257	Transcription factor MYB3	no	no	0.304	0.400	0.669	3e-38
P20026	267	Myb-related protein Hv1 O	N/A	no	0.355	0.449	0.611	4e-38
P80073	421	Myb-related protein Pp2 O	N/A	no	0.319	0.256	0.657	4e-38

>sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1

 Score =  211 bits (538), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 112/130 (86%), Gaps = 7/130 (5%)

Query: 1   MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ 60
           MRKP++      +  S    K  K++KGLWSPEED KL++YML+NGQGCWSD+A+NAGLQ
Sbjct: 1   MRKPEVA-----IAASTHQVK--KMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQ 53

Query: 61  RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNF 120
           RCGKSCRLRWINYLRPDLKRGAFSPQEE+LII  HSILGNRWSQIAARLPGRTDNEIKNF
Sbjct: 54  RCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNF 113

Query: 121 WNSTLKKILK 130
           WNST+KK LK
Sbjct: 114 WNSTIKKRLK 123

Transcription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 94/114 (82%)

Query: 24  KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
           KLRKGLWSPEED+KL+ Y+  +G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRGAF
Sbjct: 11  KLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 70

Query: 84  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPT 137
           S  EE LII LH+ LGNRWSQIA RLPGRTDNEIKNFWNS LKK L+     PT
Sbjct: 71  SQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGIDPT 124

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 90/109 (82%)

Query: 24  KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
           K+RKGLWSPEED+KL  +++ +G GCWS + R A L RCGKSCRLRWINYLRPDLKRG F
Sbjct: 13  KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 72

Query: 84  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNN 132
           S QEE+ I+ LH ILGNRWSQIA+ LPGRTDNEIKNFWNS +KK L+  
Sbjct: 73  SQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQ 121

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 9/139 (6%)

Query: 27  KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
           KG W+ EEDDKLI Y+  +G+GCW  + R+AGLQRCGKSCRLRWINYLRPDLKRG F+ +
Sbjct: 14  KGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLE 73

Query: 87  EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK-KILKNNPNAPTPSPNN--- 142
           E++LII LHS+LGN+WS IA RLPGRTDNEIKN+WN+ +K K+L+   +  T  P N   
Sbjct: 74  EDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINETK 133

Query: 143 -----SDSSEPRGVIAGIM 156
                SDSS+    +  I+
Sbjct: 134 TSQDSSDSSKTEDPLVKIL 152

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 72/129 (55%), Positives = 96/129 (74%)

Query: 27  KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
           KG W+ EEDD+L+ Y+  +G+GCW  + + AGL RCGKSCRLRWINYLRPDLKRG F+ +
Sbjct: 14  KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 87  EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTPSPNNSDSS 146
           E+ELII LHS+LGN+WS IA RLPGRTDNEIKN+WN+ +++ L +    PT   + +D +
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSINDGT 133

Query: 147 EPRGVIAGI 155
             +  +  I
Sbjct: 134 ASQDQVTTI 142

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 73/105 (69%), Positives = 86/105 (81%)

Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
           ++KG W+ EED KLI ++LTNGQ CW  + + AGL+RCGKSCRLRW NYLRPDLKRG  S
Sbjct: 12  VKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLS 71

Query: 85  PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129
             EE+L+I LHS LGNRWS+IAARLPGRTDNEIKN WN+ +KK L
Sbjct: 72  DAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  161 bits (408), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 89/111 (80%)

Query: 27  KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
           KG W+ EED++L+ Y+  +G+GCW  + + AGL RCGKSCRLRWINYLRPDLKRG F+ +
Sbjct: 14  KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 87  EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPT 137
           E+ELII LHS+LGN+WS IA RLPGRTDNEIKN+WN+ +++ L N    PT
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPT 124

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 85/103 (82%)

Query: 27  KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
           KG W+ EED  L+ Y+  +G+GCW  + R AGLQRCGKSCRLRW+NYLRPDLKRG F+ +
Sbjct: 14  KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEE 73

Query: 87  EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129
           E+ELII LHS+LGN+WS IA RLPGRTDNEIKN+WN+ +K+ L
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

Arabidopsis thaliana (taxid: 3702)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 92/121 (76%), Gaps = 1/121 (0%)

Query: 27  KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
           KG W+ EEDD+L  Y+  +G+GCW  + + AGL RCGKSCRLRWINYLRPDLKRG FS +
Sbjct: 14  KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHE 73

Query: 87  EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAP-TPSPNNSDS 145
           E+ELII LHS+LGN+WS IA RLPGRTDNEIKN+WN+ +++ L +    P T    NSD 
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVTHRAINSDH 133

Query: 146 S 146
           +
Sbjct: 134 A 134

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 85/108 (78%)

Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
           LR+G W+ EED KL+ ++  NG  CW  I + AGL RCGKSCRLRW NYLRPDLKRG FS
Sbjct: 12  LRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFS 71

Query: 85  PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNN 132
             EE LI+ LH+ LGNRWS+IAA+LPGRTDNEIKN+WN+ LKK L++ 
Sbjct: 72  EAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQ 119

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
224104065	333	predicted protein [Populus trichocarpa]	0.958	0.972	0.688	1e-118
224059634	327	predicted protein [Populus trichocarpa]	0.958	0.990	0.684	1e-115
356573782	331	PREDICTED: uncharacterized protein LOC10	0.928	0.948	0.610	3e-96
356551068	330	PREDICTED: transcription factor MYB86-li	0.902	0.924	0.614	2e-94
225435450	325	PREDICTED: transcription factor MYB46 [V	0.952	0.990	0.545	9e-90
39725413	321	MYB transcription factor [Eucalyptus gun	0.896	0.943	0.574	4e-88
383081897	321	MYB transcription factor 2 [Eucalyptus p	0.896	0.943	0.568	2e-83
383081895	321	MYB transcription factor 2 [Eucalyptus p	0.896	0.943	0.568	3e-83
225450133	326	PREDICTED: transcription factor MYB46-li	0.911	0.944	0.537	4e-82
356541195	327	PREDICTED: transcription factor MYB46-li	0.926	0.957	0.513	4e-78

>gi|224104065|ref|XP_002313303.1| predicted protein [Populus trichocarpa] gi|222849711|gb|EEE87258.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/347 (68%), Positives = 271/347 (78%), Gaps = 23/347 (6%)

Query: 1   MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ 60
           MRKPDL+GK+R+ + S+IN    KLRKGLWSPEED+KLIKYMLTNGQGCWSDIARNAGLQ
Sbjct: 1   MRKPDLVGKDRVPSNSSINKA--KLRKGLWSPEEDEKLIKYMLTNGQGCWSDIARNAGLQ 58

Query: 61  RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNF 120
           RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLH+ILGNRWSQIAARLPGRTDNEIKNF
Sbjct: 59  RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHTILGNRWSQIAARLPGRTDNEIKNF 118

Query: 121 WNSTLKKILKNNPNAPTPSPNNSDSSEPRG-VIAGIMPMPNDHDIMTMCMDSSSSSSTSI 179
           WNSTLKK LK N N  T SPN+SDSSEPR   I  IMP  +D D MT+CMDSSSSSS S+
Sbjct: 119 WNSTLKKRLKIN-NTSTSSPNDSDSSEPRDHAIGNIMPT-HDPDTMTLCMDSSSSSSISM 176

Query: 180 QTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEP-S 238
           Q M+TSN     D FSML+ RYD+T A+ LF +M TC  QV   GDG + + YGILE  +
Sbjct: 177 QGMITSNR---FDSFSMLNNRYDVTGAASLF-DMSTCLTQVG-MGDGFYGDHYGILEANN 231

Query: 239 KMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNN-------NNHYTNNSCFNNT 291
           K GLE DLSLPPLESRS EENN+ +     N  + +K ++       +N   +N+CFNN 
Sbjct: 232 KTGLESDLSLPPLESRSFEENNTVS-----NNRIGMKSSSNNNNNCFDNTCFDNTCFNNN 286

Query: 292 IDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE 338
            DQ  KV DMLGLEN+WQGENLR+GEWD EG M+NI+SFP LDF VE
Sbjct: 287 TDQRFKVEDMLGLENHWQGENLRMGEWDFEGLMENITSFPLLDFHVE 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059634|ref|XP_002299944.1| predicted protein [Populus trichocarpa] gi|222847202|gb|EEE84749.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/339 (68%), Positives = 272/339 (80%), Gaps = 15/339 (4%)

Query: 1   MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ 60
           MRKPDLM ++R+   +N+N    KLRKGLWSPEED+KLI+YMLTNGQGCWS+IARNAGLQ
Sbjct: 1   MRKPDLMARDRVPINNNMNRA--KLRKGLWSPEEDEKLIQYMLTNGQGCWSEIARNAGLQ 58

Query: 61  RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNF 120
           RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNF
Sbjct: 59  RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNF 118

Query: 121 WNSTLKKILKNNPNAPTPSPNNSDSSEPRG-VIAGIMPMPNDHDIMTMCMDSSSSSSTSI 179
           WNSTLKK  K N  + +   ++SDSSEPR  V+  IMPM +DHD+MT+C DSSSS S S+
Sbjct: 119 WNSTLKKRFKINSTSTSSPNDSSDSSEPRDHVVGNIMPM-HDHDVMTLCKDSSSSPSISM 177

Query: 180 QTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEP-S 238
             +VT N     DPF++L  RYD++ A+ LF +M TC  QV   GDG + + YGILE  +
Sbjct: 178 HGVVTGNQ---FDPFTVLSNRYDVSGAASLF-DMSTCLTQVG-MGDGFYGDHYGILEGNN 232

Query: 239 KMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKV 298
           K+GLE DLSLPPLESRSIEENN   A +N+   V    N+N+H+ +++CFNNT DQ  KV
Sbjct: 233 KIGLESDLSLPPLESRSIEENN---AVSNNRIGVKSSSNDNHHF-DSTCFNNT-DQRFKV 287

Query: 299 GDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQV 337
            DMLGLEN+WQGEN+R+GEWDLEG M+NISSFPFLDFQV
Sbjct: 288 EDMLGLENHWQGENVRMGEWDLEGLMENISSFPFLDFQV 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573782|ref|XP_003555035.1| PREDICTED: uncharacterized protein LOC100796379 [Glycine max]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 213/349 (61%), Positives = 251/349 (71%), Gaps = 35/349 (10%)

Query: 6   LMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKS 65
           +MGK+++ N    N K+ KLRKGLWSPEED+KL++YM+T GQGCWSDIARNAGLQRCGKS
Sbjct: 1   MMGKDKINN----NIKS-KLRKGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRCGKS 55

Query: 66  CRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTL 125
           CRLRWINYLRPDLKRGAFSPQEEE+IIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTL
Sbjct: 56  CRLRWINYLRPDLKRGAFSPQEEEVIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTL 115

Query: 126 KKILKNNPNAPTPSPNNSDSSEPR--GVIAGIMPMPNDHDIMTMCMDSSSSSSTSIQTMV 183
           KK LK N N  T SPNNSDSS P+   V+ GIM M N+HD+MTMCMDSSSS+S+S     
Sbjct: 116 KKRLKMNNNNSTLSPNNSDSSGPKDVNVMGGIMSM-NEHDLMTMCMDSSSSTSSSSCMQS 174

Query: 184 T-SNNSQLIDPFSML-DTRYD-MTSASCLFNNM-PTCTAQVDHTGDGLFYEDYGI----L 235
             + N  L +PF +L + RYD MT A+   +NM   C  QV     G+   D+G+    L
Sbjct: 175 MHATNMVLTNPFPLLPNNRYDMMTGATGFLDNMAAACLTQV-----GMVDHDHGVVHGTL 229

Query: 236 EPSKMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNT---- 291
           EP+K  L  D SLPPLESRSIE+N+S    +       +K +NNN++  NSCFNNT    
Sbjct: 230 EPNKTRLGSDFSLPPLESRSIEDNSSTPIDH-------VKSHNNNNHFKNSCFNNTDHYH 282

Query: 292 ---IDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQV 337
                  + V D+ G  N+ QGEN R+GEWDLEG M +IS FP LDFQV
Sbjct: 283 HIQSSNNVVVEDLFGFGNHGQGENFRMGEWDLEGLMQDISYFPSLDFQV 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551068|ref|XP_003543900.1| PREDICTED: transcription factor MYB86-like [Glycine max]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 204/332 (61%), Positives = 240/332 (72%), Gaps = 27/332 (8%)

Query: 24  KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
           KLRKGLWSPEED+KL++YM+T GQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF
Sbjct: 8   KLRKGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 67

Query: 84  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK--NNPNAPTPSPN 141
           SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK LK  NN NA +   N
Sbjct: 68  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMNNNINATSSPNN 127

Query: 142 NSDSSEPR--GVIAGIMPMPNDHDIMTMCMDSSSSSSTSIQTMVTSNNSQL---IDPFSM 196
           +  SSEPR   V+ GIMPM N+HD+MTMCMDSSSS+S+S    + + N  L    DPF +
Sbjct: 128 SYSSSEPRDVNVMGGIMPM-NEHDLMTMCMDSSSSTSSSCMQSMHTTNMVLTDQFDPFPL 186

Query: 197 L-DTRYDMTSASCLFNNMPTCTAQ---VDHTGDGLFYEDYGILEPSKMGLEGDLSLPPLE 252
           L + RYDMT A+   +NM  C  Q   VDH   G+ ++ YG LEP+K GLE D SLPPLE
Sbjct: 187 LSNNRYDMTGATDFLDNMAACLTQVGMVDHD-HGVVHDGYGTLEPNKTGLESDFSLPPLE 245

Query: 253 SRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNT-------IDQGIKVGDMLGLE 305
           SRSI++N+S    +       +K +NNN++  NSCFNNT           + V D+ G  
Sbjct: 246 SRSIDDNSSTPIDH-------VKSHNNNNHFKNSCFNNTDHHHHIQCSNNVVVEDLFGFG 298

Query: 306 NNWQGENLRVGEWDLEGFMDNISSFPFLDFQV 337
           N+  GE+ R+ EWD EG + +I  F  LDFQV
Sbjct: 299 NHGHGESFRMEEWDFEGLIQDIPYFSSLDFQV 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435450|ref|XP_002282821.1| PREDICTED: transcription factor MYB46 [Vitis vinifera] gi|297746322|emb|CBI16378.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 186/341 (54%), Positives = 233/341 (68%), Gaps = 19/341 (5%)

Query: 1   MRKPDLMGKERLVNG--SNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG 58
           MRKP+    +   NG  SN  +  +KLRKGLWSPEEDDKL+ YML NGQGCWSD+ARNAG
Sbjct: 1   MRKPE----KSTANGACSNTTSTGSKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAG 56

Query: 59  LQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIK 118
           LQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHS+LGNRWSQIAARLPGRTDNEIK
Sbjct: 57  LQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIK 116

Query: 119 NFWNSTLKKILKNNPNAPTPSPNNSDSSEPRGVIAGIMPMPNDHDIMTMCMDSSSSSSTS 178
           NFWNST+KK LKN+ + P+P+ ++S S +PR V+ G+M M  +  +M M MD SSSS  S
Sbjct: 117 NFWNSTIKKRLKNSSSVPSPNASDSSSDQPRDVMGGLMSM-REQGLMAMYMD-SSSSPPS 174

Query: 179 IQTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVD-HTGDGLFYEDYGILEP 237
           IQ M   N  Q+I+P  ML+   DMTS +    N P C  QV   + +GL+ +  G+L  
Sbjct: 175 IQAMAALN--QMIEPLPMLEPSVDMTSVNSGCFNAPPCMTQVGILSAEGLYGDHVGLLGG 232

Query: 238 SKMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIK 297
               + G+   PP+ES S+ EN +   +N          + N +    +      +   K
Sbjct: 233 GGGCVVGEQFFPPVESISMGENGNKTLENTF--------DRNPNNNPYNNVIINNNSSNK 284

Query: 298 VGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE 338
           V +M+G+ N W+GE+LR+GEW+LE  M ++SSFPFLDF VE
Sbjct: 285 VENMVGVGNFWEGEDLRIGEWNLEDLMRDVSSFPFLDFHVE 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|39725413|emb|CAE09057.1| MYB transcription factor [Eucalyptus gunnii] gi|383081901|dbj|BAM05603.1| MYB transcription factor 2 [Eucalyptus globulus subsp. globulus]

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 185/322 (57%), Positives = 215/322 (66%), Gaps = 19/322 (5%)

Query: 19  NAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL 78
           N   +KLRKGLWSPEED+KL++YMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL
Sbjct: 14  NPHNHKLRKGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL 73

Query: 79  KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTP 138
           KRGAFSPQEEELI+HLH+ILGNRWSQIAARLPGRTDNEIKNFWNSTLKK LK   N+ T 
Sbjct: 74  KRGAFSPQEEELIVHLHNILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKM--NSATS 131

Query: 139 SPNNSDSSEPRGVIAGIMP-MPNDHDIMTMCMDSSSSSSTSIQTMVTSNNSQLIDPFSML 197
           S N SD S P+ + AGIMP     +D++  CMDSS +    +  +   N     DPF  L
Sbjct: 132 SSNESDLSNPQDIAAGIMPSFHAQYDVLATCMDSSPAPFPPMDNISAPNQ---FDPFPTL 188

Query: 198 DTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEG-DLSLPPLESR-- 254
           + R D       F   P+  A V    D      Y  LE +K+GL G + S+PPL S   
Sbjct: 189 NNRCDTWEGVGFF-TFPSGIAPVSMGDD----SSYLNLEHAKVGLLGSEFSVPPLASSTT 243

Query: 255 SIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKV-GDMLGLENNWQGENL 313
           + EENN  +        +D KG N+    N+SCF+NT     K   DM G  NN Q  NL
Sbjct: 244 TTEENNYRSI----GCGMDGKGENSFSNNNDSCFSNTTTASFKAEDDMSGFGNNLQAANL 299

Query: 314 RVGEWDLEGFMDNISSFPFLDF 335
           R+GEWDLEG MD++ SFPFLDF
Sbjct: 300 RIGEWDLEGLMDDLPSFPFLDF 321

Source: Eucalyptus gunnii

Species: Eucalyptus gunnii

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383081897|dbj|BAM05601.1| MYB transcription factor 2 [Eucalyptus pilularis]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/322 (56%), Positives = 215/322 (66%), Gaps = 19/322 (5%)

Query: 19  NAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL 78
           N    KLRKGLWSPEED+KL++YMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL
Sbjct: 14  NPHNQKLRKGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL 73

Query: 79  KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTP 138
           KRGAFSPQEEELI+HLH+ILGNRWSQIAARLPGRTDNEIKNFWNSTLKK LK   N+ T 
Sbjct: 74  KRGAFSPQEEELIVHLHNILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKM--NSATS 131

Query: 139 SPNNSDSSEPRGVIAGIMP-MPNDHDIMTMCMDSSSSSSTSIQTMVTSNNSQLIDPFSML 197
           S N+SD S P+ + AGIMP     +D++   MDSS +    +  +   N+    DPF  L
Sbjct: 132 SSNDSDLSNPQDITAGIMPSFHAQYDVLATRMDSSPAPFPPMDNISAPNH---FDPFPTL 188

Query: 198 DTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEG-DLSLPPLESR-- 254
           + R D       F + P+    V    D      Y  LE +K+GL G + S+PPL S   
Sbjct: 189 NNRCDTWEGVGFF-SFPSGIGPVGMGDD----SSYLNLEHAKVGLLGSEFSVPPLASSTT 243

Query: 255 SIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKV-GDMLGLENNWQGENL 313
           + EENN  +        +D KG N+    N+SCF+NT     K   DM G  NN Q  NL
Sbjct: 244 TTEENNYRSI----GCGMDGKGENSFSNNNDSCFSNTTTASFKAEDDMSGFGNNLQAANL 299

Query: 314 RVGEWDLEGFMDNISSFPFLDF 335
           R+GEWDLEG MD++ SFPFLDF
Sbjct: 300 RIGEWDLEGLMDDLPSFPFLDF 321

Source: Eucalyptus pilularis

Species: Eucalyptus pilularis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383081895|dbj|BAM05600.1| MYB transcription factor 2 [Eucalyptus pilularis] gi|383081899|dbj|BAM05602.1| MYB transcription factor 2 [Eucalyptus pyrocarpa]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 183/322 (56%), Positives = 215/322 (66%), Gaps = 19/322 (5%)

Query: 19  NAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL 78
           N    KLRKGLWSPEED+KL++YMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL
Sbjct: 14  NPHNQKLRKGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL 73

Query: 79  KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTP 138
           KRGAFSPQEEELI+HLH+ILGNRWSQIAARLPGRTDNEIKNFWNSTLKK LK   N+ T 
Sbjct: 74  KRGAFSPQEEELIVHLHNILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKM--NSATS 131

Query: 139 SPNNSDSSEPRGVIAGIMP-MPNDHDIMTMCMDSSSSSSTSIQTMVTSNNSQLIDPFSML 197
           S N+SD S P+ + AGIMP     +D++   MDSS +    +  +   N+    DPF  L
Sbjct: 132 SSNDSDLSNPQDIAAGIMPSFHAQYDVLATRMDSSPAPFPPMDNISAPNH---FDPFPTL 188

Query: 198 DTRYDMTSASCLFNNMPTCTAQVDHTGDGLFYEDYGILEPSKMGLEG-DLSLPPLESR-- 254
           + R D       F + P+    V    D      Y  LE +K+GL G + S+PPL S   
Sbjct: 189 NNRCDTWEGVGFF-SFPSGIGPVGMGDD----SSYLNLEHAKVGLLGSEFSVPPLASSTT 243

Query: 255 SIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNNTIDQGIKV-GDMLGLENNWQGENL 313
           + EENN  +        +D KG N+    N+SCF+NT     K   DM G  NN Q  NL
Sbjct: 244 TTEENNYRSI----GCGMDGKGENSFSNNNDSCFSNTTTASFKAEDDMSGFGNNLQAANL 299

Query: 314 RVGEWDLEGFMDNISSFPFLDF 335
           R+GEWDLEG MD++ SFPFLDF
Sbjct: 300 RIGEWDLEGLMDDLPSFPFLDF 321

Source: Eucalyptus pilularis

Species: Eucalyptus pilularis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450133|ref|XP_002275467.1| PREDICTED: transcription factor MYB46-like [Vitis vinifera]

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 188/350 (53%), Positives = 238/350 (68%), Gaps = 42/350 (12%)

Query: 7   MGKERLVNGSNINAKANK-----LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQR 61
           MGK+R++  +NI    NK     LRKGLWSPEED+KL+ YML NGQGCWSDIARNAGLQR
Sbjct: 1   MGKDRVLINNNIANNNNKNNNNKLRKGLWSPEEDEKLMSYMLRNGQGCWSDIARNAGLQR 60

Query: 62  CGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFW 121
           CGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFW
Sbjct: 61  CGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFW 120

Query: 122 NSTLKKILKNNPNAPTPSPNNSDSSEPRGVIAGI-------------MPMPNDHDIMTMC 168
           NST+KK LKN+    +P+  +  S EPR V+  I             +   ++H++M M 
Sbjct: 121 NSTIKKRLKNSLQTHSPNDCHDSSLEPRVVVDNINAMGMGVGGSSGMLLSMHEHEMMNMY 180

Query: 169 MDSSSSSSTSIQTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGDGLF 228
           MDSSSSS +S+ TM+TSN   L +PF +LD R+D    S     +P C A+ + T +  F
Sbjct: 181 MDSSSSSFSSMNTMLTSN--HLDNPFPLLDNRHDQMVFS-----LPNCMAKPEMTDE--F 231

Query: 229 YEDYGILEPSKMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCF 288
              YG+     MG+E ++S+P  +S S  E N+ A +N + Y +D+K NN+    +++ F
Sbjct: 232 DGRYGVTGGGNMGVEREISIPGSQSNSTTEENNGATQNEY-YTIDMKNNNSKVEESDNIF 290

Query: 289 NNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDFQVE 338
                         G+ N+WQGEN+ +GEWDLEG ++N SSFPFLDFQ++
Sbjct: 291 --------------GVGNHWQGENMGIGEWDLEGLLENASSFPFLDFQLQ 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541195|ref|XP_003539066.1| PREDICTED: transcription factor MYB46-like [Glycine max]

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 177/345 (51%), Positives = 214/345 (62%), Gaps = 32/345 (9%)

Query: 1   MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ 60
           MRKP++ GK   +N        NKLRKGLWSPEEDDKL+ YML +GQGCWSD+ARNAGLQ
Sbjct: 1   MRKPEVSGKNNNIN--------NKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQ 52

Query: 61  RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNF 120
           RCGKSCRLRWINYLRPDLKRGAFSPQEEE+IIHLHS+LGNRWSQIAARLPGRTDNEIKNF
Sbjct: 53  RCGKSCRLRWINYLRPDLKRGAFSPQEEEIIIHLHSLLGNRWSQIAARLPGRTDNEIKNF 112

Query: 121 WNSTLKKILKN-----NPNAPTPS--PNNSDSSEPRGVIAGIMPMPNDHDIMTMCMDSSS 173
           WNST+KK LKN     +PN    S  PNN D +      +         D M M   SS 
Sbjct: 113 WNSTIKKRLKNLSSNTSPNGSESSYEPNNKDLNMAGFTTSNTQQNQQHADFMPMFNSSSQ 172

Query: 174 SSSTSIQTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTGD---GLFYE 230
           S S    T++ S    +ID   ML+   +MTS+   FN+   C +      D   G + E
Sbjct: 173 SPSMHATTVLNS----IIDRLPMLEHGLNMTSSGGFFNSKGPCFSSSQSGVDNNKGFYLE 228

Query: 231 DYGILEPSKMGLEGDLSLPPLESRSIEENNSNAAKNNHNYNVDLKGNNNNHYTNNSCFNN 290
           + G+     +G EGD+ +PPLES +      N   NN NY  D+     N+   N+  N 
Sbjct: 229 NGGVFGSVNIGAEGDMYVPPLESSTC-----NTDTNNSNYFDDINSIILNNCNINNSNNI 283

Query: 291 TIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNISSFPFLDF 335
              +  + G   G+EN +Q E L +GEWDLE  M ++SSFPFLDF
Sbjct: 284 KRAEN-RAG---GVENLFQ-EELTIGEWDLEELMKDVSSFPFLDF 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2103459	343	MYB83 "myb domain protein 83"	0.378	0.373	0.8	6.8e-71
TAIR|locus:2182275	280	MYB46 "myb domain protein 46"	0.363	0.439	0.769	2.3e-54
TAIR|locus:2012375	366	MYB61 "AT1G09540" [Arabidopsis	0.316	0.292	0.766	4.4e-45
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.316	0.303	0.785	1.9e-44
TAIR|locus:2027508	314	MYB50 "myb domain protein 50"	0.313	0.337	0.754	1e-43
TAIR|locus:2195528	370	AtMYB103 "myb domain protein 1	0.316	0.289	0.691	1.2e-42
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.325	0.339	0.684	3.6e-42
TAIR|locus:2133382	348	MYB55 "myb domain protein 55"	0.316	0.307	0.697	3.6e-41
TAIR|locus:2088187	367	MYB26 "myb domain protein 26"	0.313	0.288	0.695	4.6e-41
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.319	0.308	0.678	8.4e-41

TAIR|locus:2103459 MYB83 "myb domain protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 108/135 (80%), Positives = 114/135 (84%)

Query:     1 MRKPDLM-----GKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIAR 55
             MRKPD+      GK     G N N    KLRKGLWSP+ED+KLI+YMLTNGQGCWSDIAR
Sbjct:     3 MRKPDITTIRDKGKPNHACGGNNNKP--KLRKGLWSPDEDEKLIRYMLTNGQGCWSDIAR 60

Query:    56 NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDN 115
             NAGL RCGKSCRLRWINYLRPDLKRG+FSPQEE+LI HLHSILGNRWSQIA RLPGRTDN
Sbjct:    61 NAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDN 120

Query:   116 EIKNFWNSTLKKILK 130
             EIKNFWNSTLKK LK
Sbjct:   121 EIKNFWNSTLKKRLK 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2182275 MYB46 "myb domain protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
 Identities = 100/130 (76%), Positives = 112/130 (86%)

Query:     1 MRKPDLMGKERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ 60
             MRKP++      +  S    K  K++KGLWSPEED KL++YML+NGQGCWSD+A+NAGLQ
Sbjct:     1 MRKPEVA-----IAASTHQVK--KMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQ 53

Query:    61 RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNF 120
             RCGKSCRLRWINYLRPDLKRGAFSPQEE+LII  HSILGNRWSQIAARLPGRTDNEIKNF
Sbjct:    54 RCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNF 113

Query:   121 WNSTLKKILK 130
             WNST+KK LK
Sbjct:   114 WNSTIKKRLK 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:1901348 "positive regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2012375 MYB61 "AT1G09540" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 82/107 (76%), Positives = 96/107 (89%)

Query:    24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
             KLRKGLWSPEED+KL+ ++  +G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRGAF
Sbjct:    11 KLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 70

Query:    84 SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130
             SP+EE LI+ LH++LGNRWSQIA+RLPGRTDNEIKN WNS++KK LK
Sbjct:    71 SPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLK 117

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010214 "seed coat development" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=IMP;RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0001944 "vasculature development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 84/107 (78%), Positives = 92/107 (85%)

Query:    24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
             KLRKGLWSPEED+KL+ Y+  +G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRGAF
Sbjct:    11 KLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 70

Query:    84 SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130
             S  EE LII LH+ LGNRWSQIA RLPGRTDNEIKNFWNS LKK L+
Sbjct:    71 SQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLR 117

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2027508 MYB50 "myb domain protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 80/106 (75%), Positives = 93/106 (87%)

Query:    24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
             KLRKGLWSPEED+KL+ Y+  +G GCWS + + AGL+RCGKSCRLRWINYLRPDLKRGAF
Sbjct:    11 KLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGAF 70

Query:    84 SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129
             S +E+ LI+ LH++LGNRWSQIAARLPGRTDNEIKN WNS +KK L
Sbjct:    71 SSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKL 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2195528 AtMYB103 "myb domain protein 103" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 74/107 (69%), Positives = 95/107 (88%)

Query:    24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
             K+++GLWSPEED+KLI+Y+ T+G GCWS++   AGLQRCGKSCRLRWINYLRPD++RG F
Sbjct:    11 KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRF 70

Query:    84 SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130
             SP+EE+LII LH ++GNRW+ IA+ LPGRTDNEIKN+WNS +KK ++
Sbjct:    71 SPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIR 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:1901430 "positive regulation of syringal lignin biosynthetic process" evidence=IMP

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 76/111 (68%), Positives = 91/111 (81%)

Query:    21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKR 80
             K N L+KG W+PEED KLI Y+  +G G W  + +NAGLQRCGKSCRLRW NYLRPD+KR
Sbjct:     9 KKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKR 68

Query:    81 GAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK-ILK 130
             G FS +EEE II LHSI+GN+WS IAARLPGRTDNEIKN+WN+ ++K +LK
Sbjct:    69 GRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLK 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2133382 MYB55 "myb domain protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 83/119 (69%), Positives = 93/119 (78%)

Query:    24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG------------LQRCGKSCRLRWI 71
             KLRKGLWSPEED+KL++Y+   G GCWS + + AG            LQRCGKSCRLRWI
Sbjct:    11 KLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTFLFIQIHLLFGLQRCGKSCRLRWI 70

Query:    72 NYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130
             NYLRPDLKRGAFS  EE LII LH++LGNRWSQIAA+LPGRTDNEIKN WNS LKK L+
Sbjct:    71 NYLRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2088187 MYB26 "myb domain protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 80/115 (69%), Positives = 94/115 (81%)

Query:    24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG---------LQRCGKSCRLRWINYL 74
             K+++GLWSPEED+KLI Y+ + G GCWS + ++AG         LQRCGKSCRLRWINYL
Sbjct:    11 KVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGKSCRLRWINYL 70

Query:    75 RPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL 129
             RPDLKRG+FSPQE  LII LHSILGNRW+QIA  LPGRTDNE+KNFWNS++KK L
Sbjct:    71 RPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKL 125

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 74/109 (67%), Positives = 88/109 (80%)

Query:    23 NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGA 82
             N L+KG W+ EED KL+ Y+  +G G W  + +NAGLQRCGKSCRLRW NYLRPD+KRG 
Sbjct:    10 NGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGR 69

Query:    83 FSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTL-KKILK 130
             FS +EEE II LHS LGN+WS IAARLPGRTDNEIKNFWN+ + KK+L+
Sbjct:    70 FSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLR 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024611001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (325 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	3e-60
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	4e-40
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-13
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	5e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	8e-06
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	0.001

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  199 bits (508), Expect = 3e-60
 Identities = 101/216 (46%), Positives = 123/216 (56%), Gaps = 32/216 (14%)

Query: 24  KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
           KLRKGLWSPEED+KL++++   G GCWS + + AGLQRCGKSCRLRWINYLRPDLKRG F
Sbjct: 11  KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTF 70

Query: 84  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKN---NPNAPTP-- 138
           S QEE LII LH++LGNRWSQIAA+LPGRTDNEIKN WNS LKK L+    +PN   P  
Sbjct: 71  SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLS 130

Query: 139 --------SPNNSDSSE-------------------PRGVIAGIMPMPNDHDIMTMCMDS 171
                   +P   D S+                   P   +              + ++S
Sbjct: 131 EVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLAALQEKRSSSISPAGYQLEVES 190

Query: 172 SSSSSTSIQTMVTSNNSQLIDPFSMLDTRYDMTSAS 207
           SSSS  +       +NS L+ P    D   D  + S
Sbjct: 191 SSSSKINNSNNNNHSNSNLMTPTPNKDFFLDRFTTS 226

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  140 bits (355), Expect = 4e-40
 Identities = 72/162 (44%), Positives = 104/162 (64%), Gaps = 7/162 (4%)

Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
           +++G W+ EED+ L+ ++   G+G W  + + AGL RCGKSCRLRW+NYLRP +KRG  +
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 85  PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTL-KKILKNNPNAPTPSPNNS 143
             EE+LI+ LH +LGNRWS IA R+PGRTDNEIKN+WN+ L KK+L+   +  T  P ++
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDA 142

Query: 144 DS-SEPRGVIAG-----IMPMPNDHDIMTMCMDSSSSSSTSI 179
           ++  +P   ++G     I P+ + H   T        S  SI
Sbjct: 143 NNIHKPEEEVSGGQKYPIEPISSSHTDDTTVNGGDGDSKNSI 184

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 80  RGAFSPQEEELIIHLHSILGNR-WSQIAARLPGRTDNEIKNFWNSTL 125
           RG ++P+E+EL+I      GN  WS+IA  LPGRTDN+ KN WN+ L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74
          +G W+PEED+ LI+ +  +G G WS IA++    R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 30 WSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEE 89
          W+ EED+KL+K +   G   W  IA    L R   +CR RW   LRP   RG ++ +E++
Sbjct: 1  WTEEEDEKLLKLVEKYGND-WKQIA--EELGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 24  KLRKGLWSPEED---DKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKR 80
           K + G W   ED     L+K +  N    WS +A        GK    RW N+L P LK+
Sbjct: 17  KRKGGSWKRTEDEDLKALVKKLGPNN---WSKVASLLIS-STGKQSSNRWNNHLNPQLKK 72

Query: 81  GAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAP 136
             +S +E+E +I L   LG +WS IA     RT  +    + +TL+ +   + +  
Sbjct: 73  KNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKL 128

Length = 512

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 80  RGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKK 127
           +G ++ +E+EL+I L    G N W +IA  LPGRT  + +  W + LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 56.8 bits (138), Expect = 5e-11
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 82  AFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTL 125
            ++ +E+EL++      G N W +IA  LPGRT  + +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRP 76
          KG W+ EED+ LI+ +   G+  W  IA+     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 30 WSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74
          W+ EED+ L++ +   G+  W  IA+     R  K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 83  FSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP 133
           ++ +E+E ++ L    GN W QIA  L GRT +  ++ W   L+      P
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGP 50

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 76  PDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDN 115
           P +K+  ++ +E+E ++HL  +L  +W  I A + GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTI-APIVGRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	99.98
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.75
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.72
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.6
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.53
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.51
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.4
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.34
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.29
PLN03212	249	Transcription repressor MYB5; Provisional	99.25
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.18
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.07
PLN03091	459	hypothetical protein; Provisional	99.07
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.06
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.99
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.86
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.84
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.11
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.79
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.77
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.55
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.51
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.46
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.32
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.28
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.18
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.94
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.84
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.71
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.4
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.36
PRK13923	170	putative spore coat protein regulator protein YlbO	96.33
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.23
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.15
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.02
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.75
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.69
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.39
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.24
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.67
PRK13923	170	putative spore coat protein regulator protein YlbO	94.41
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.84
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.56
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.96
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.86
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.93
KOG1194	534	consensus Predicted DNA-binding protein, contains	88.5
KOG4329	445	consensus DNA-binding protein [General function pr	82.74
KOG4167	907	consensus Predicted DNA-binding protein, contains	82.67
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	82.49
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	81.25

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=1.6e-33  Score=263.23  Aligned_cols=113  Identities=58%  Similarity=1.004  Sum_probs=108.2

Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019619           21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN  100 (338)
Q Consensus        21 k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~  100 (338)
                      +++.+.||+||+|||++|+++|++||.++|..||+.+|++|++++||+||.|||+|++++|.||+|||++|+++|.+||+
T Consensus         3 kk~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GN   82 (238)
T KOG0048|consen    3 RNPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGN   82 (238)
T ss_pred             CCccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCc
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhccCCCCCHHHHHHHHHHHhHHHHhcCC
Q 019619          101 RWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus       101 kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      +|+.||++|||||+++|||+|+..+||++....
T Consensus        83 rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   83 RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999988764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.98  E-value=8.4e-33  Score=257.48  Aligned_cols=114  Identities=53%  Similarity=1.080  Sum_probs=108.3

Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019619           21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN  100 (338)
Q Consensus        21 k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~  100 (338)
                      -++.+++++||+|||++|+++|++||..+|..||+.|+++|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            36889999999999999999999999989999999986699999999999999999999999999999999999999999


Q ss_pred             chHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCC
Q 019619          101 RWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPN  134 (338)
Q Consensus       101 kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~  134 (338)
                      +|..||+.|+|||+++|||||+.++++.+.....
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i  132 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGI  132 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCC
Confidence            9999999999999999999999999998776543

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=1.1e-31  Score=266.02  Aligned_cols=113  Identities=73%  Similarity=1.298  Sum_probs=107.8

Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019619           21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN  100 (338)
Q Consensus        21 k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~  100 (338)
                      .+.+++|++||+|||++|+++|.+||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++++++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            35789999999999999999999999999999999987799999999999999999999999999999999999999999


Q ss_pred             chHHHhccCCCCCHHHHHHHHHHHhHHHHhcCC
Q 019619          101 RWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus       101 kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      +|.+||+.|+|||+++|||||+.++||+++...
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~~  120 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG  120 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999877543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.75  E-value=1.3e-18  Score=178.56  Aligned_cols=126  Identities=26%  Similarity=0.414  Sum_probs=115.6

Q ss_pred             cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccc-------------------------
Q 019619           13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCR-------------------------   67 (338)
Q Consensus        13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr-------------------------   67 (338)
                      ....|+|...|+++|--|++|||++|+.+...++..+|..||..+|..|+..||.                         
T Consensus       239 ~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~a  318 (939)
T KOG0049|consen  239 VKSKWYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIA  318 (939)
T ss_pred             HHHHHhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHH
Confidence            4678999999999999999999999999999999999999999998668888886                         


Q ss_pred             -----------------------------eeeeeeccCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHH
Q 019619           68 -----------------------------LRWINYLRPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEI  117 (338)
Q Consensus        68 -----------------------------~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~  117 (338)
                                                   -||.+.|+|.+++|+||++||.+|+.+|.+|| ..|-+|-..+|||++.||
T Consensus       319 lV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQc  398 (939)
T KOG0049|consen  319 LVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQC  398 (939)
T ss_pred             HHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHH
Confidence                                         46778899999999999999999999999999 569999999999999999


Q ss_pred             HHHHHHHhHHHHhcCCCCCCC
Q 019619          118 KNFWNSTLKKILKNNPNAPTP  138 (338)
Q Consensus       118 KnRW~~llrk~~k~~~~s~~~  138 (338)
                      |.||.+.|.+.+|++.|+-..
T Consensus       399 R~RY~nvL~~s~K~~rW~l~e  419 (939)
T KOG0049|consen  399 RERYTNVLNRSAKVERWTLVE  419 (939)
T ss_pred             HHHHHHHHHHhhccCceeecc
Confidence            999999999999998876543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.72  E-value=5.1e-18  Score=174.24  Aligned_cols=107  Identities=21%  Similarity=0.406  Sum_probs=100.7

Q ss_pred             cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHH
Q 019619           13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELII   92 (338)
Q Consensus        13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLl   92 (338)
                      -..+|.....|.+++|+||++||.+|+.+|.+||.++|.+|-+.+| +|+..|||+||.+.|+...|.+.||-.||+.|+
T Consensus       346 LI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~  424 (939)
T KOG0049|consen  346 LITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLL  424 (939)
T ss_pred             hhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHH
Confidence            4678899999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             HHHHHhC-CchHHHhccCCCCCHHHHHHH
Q 019619           93 HLHSILG-NRWSQIAARLPGRTDNEIKNF  120 (338)
Q Consensus        93 elv~~~G-~kWs~IA~~lpgRT~~q~KnR  120 (338)
                      .++++|| ++|.+||..||.||..|...|
T Consensus       425 ~~V~~YG~g~WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  425 YAVKVYGKGNWAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             HHHHHHccchHHHHHHHccccchhHHHHH
Confidence            9999999 889999999999999554333

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.60  E-value=3.1e-16  Score=116.43  Aligned_cols=60  Identities=38%  Similarity=0.834  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHH
Q 019619           30 WSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELI   91 (338)
Q Consensus        30 WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lL   91 (338)
                      ||+|||++|+++|..||. +|..||+.|| .|++.||+.||.++|.+.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999994 6999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.53  E-value=1.1e-14  Score=148.83  Aligned_cols=109  Identities=31%  Similarity=0.498  Sum_probs=104.6

Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019619           21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN  100 (338)
Q Consensus        21 k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~  100 (338)
                      +..+++.|.|+..||+.|..+|..+|+.+|..||..+. .|+++||+.||.++++|.+++..|+.|||+.|+.+..++|.
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            56778889999999999999999999999999999998 79999999999999999999999999999999999999999


Q ss_pred             chHHHhccCCCCCHHHHHHHHHHHhHHHHh
Q 019619          101 RWSQIAARLPGRTDNEIKNFWNSTLKKILK  130 (338)
Q Consensus       101 kWs~IA~~lpgRT~~q~KnRW~~llrk~~k  130 (338)
                      .|..||..+++|+..+|.+||..++....+
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999999888776

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=9.8e-15  Score=147.37  Aligned_cols=108  Identities=27%  Similarity=0.595  Sum_probs=102.2

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHH
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQ  104 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~  104 (338)
                      ++.|.|+--||+.|..+|.+||...|++|++.+. ..+++||+.||..+|+|.+++..|+.|||++|+.++..+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5779999999999999999999989999999997 999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCCHHHHHHHHHHHhHHHHhcCCC
Q 019619          105 IAARLPGRTDNEIKNFWNSTLKKILKNNPN  134 (338)
Q Consensus       105 IA~~lpgRT~~q~KnRW~~llrk~~k~~~~  134 (338)
                      |+..+ ||+.+||-.||..++-........
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence            99999 999999999999999877766543

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.40  E-value=2.3e-13  Score=140.69  Aligned_cols=104  Identities=28%  Similarity=0.576  Sum_probs=93.7

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC--CCCCCCCHHHHHHHHHHHH-------
Q 019619           26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD--LKRGAFSPQEEELIIHLHS-------   96 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~--lkkg~WT~EED~lLlelv~-------   96 (338)
                      .+|+||+||++.|..+|..+| .+|..|+..|+  |.+..|++||.+|..+.  .+++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999 55999999996  99999999999999886  5899999999999999995       


Q ss_pred             Hh-------------------CCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619           97 IL-------------------GNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        97 ~~-------------------G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      ++                   +-.|..|++.+..|+..|||.+|..++.+....+
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~  514 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK  514 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence            33                   1359999999999999999999999988766554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=1.1e-12  Score=93.78  Aligned_cols=46  Identities=30%  Similarity=0.683  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-hHHHhccCC-CCCHHHHHHHHHHHh
Q 019619           80 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNSTL  125 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~k-Ws~IA~~lp-gRT~~q~KnRW~~ll  125 (338)
                      +++||+|||++|++++.+||.+ |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999998 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.34  E-value=1.6e-13  Score=98.07  Aligned_cols=48  Identities=38%  Similarity=0.721  Sum_probs=43.2

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeec
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL   74 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L   74 (338)
                      |++||+|||++|+++|.+||.++|..||..|+.+|+..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998889999999977999999999998865

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.29  E-value=3.3e-12  Score=94.69  Aligned_cols=53  Identities=30%  Similarity=0.631  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCC
Q 019619           83 FSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNA  135 (338)
Q Consensus        83 WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s  135 (338)
                      ||+|||++|++++.+||++|.+||+.|+.||+.+|++||...|++..+..+++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt   53 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWT   53 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcC
Confidence            99999999999999999999999999966999999999999777666655554

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.25  E-value=7.4e-12  Score=117.61  Aligned_cols=76  Identities=18%  Similarity=0.408  Sum_probs=66.4

Q ss_pred             hcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccC-CCCCHHHHHHHHHHHhHHHHhcCC
Q 019619           56 NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARL-PGRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus        56 ~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~l-pgRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      -++ +|++.-|.       ++.+++++||+|||++|+++|++|| .+|..||+.+ ++|++.|||.||.++|++.+++.+
T Consensus         9 ~~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgp   80 (249)
T PLN03212          9 PVS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGG   80 (249)
T ss_pred             CCC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCC
Confidence            455 67666554       3578899999999999999999999 6899999998 699999999999999999999999


Q ss_pred             CCCCCC
Q 019619          134 NAPTPS  139 (338)
Q Consensus       134 ~s~~~s  139 (338)
                      |+.++.
T Consensus        81 WT~EED   86 (249)
T PLN03212         81 ITSDEE   86 (249)
T ss_pred             CChHHH
Confidence            987753

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.18  E-value=3.7e-11  Score=83.20  Aligned_cols=47  Identities=43%  Similarity=0.861  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619           80 RGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llr  126 (338)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.07  E-value=6.6e-11  Score=110.98  Aligned_cols=93  Identities=17%  Similarity=0.239  Sum_probs=72.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC-CCCHHHHHHHHHHHhHHHHhcCCCCCCCCCCCCCCCCC----c
Q 019619           76 PDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLP-GRTDNEIKNFWNSTLKKILKNNPNAPTPSPNNSDSSEP----R  149 (338)
Q Consensus        76 p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp-gRT~~q~KnRW~~llrk~~k~~~~s~~~s~~~s~ss~p----~  149 (338)
                      +.+.+|+||+|||++|+++|++|| ++|..|++.++ +|++.+||-||.++|++.++++.++..+..........    =
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999 56999999998 99999999999999999999998877654322221111    1


Q ss_pred             cccCCCCCCCCCCcccCcc
Q 019619          150 GVIAGIMPMPNDHDIMTMC  168 (338)
Q Consensus       150 ~~~~~~~p~p~d~~~~~~~  168 (338)
                      ..++..+|-..|.+|.+.|
T Consensus        85 s~IA~~LPGRTDNeIKN~W  103 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHW  103 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHH
Confidence            1346677887787776554

>PLN03091 hypothetical protein; Provisional

Probab=99.07  E-value=7.4e-11  Score=118.34  Aligned_cols=65  Identities=22%  Similarity=0.424  Sum_probs=59.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccC-CCCCHHHHHHHHHHHhHHHHhcCCCCCCCC
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARL-PGRTDNEIKNFWNSTLKKILKNNPNAPTPS  139 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~l-pgRT~~q~KnRW~~llrk~~k~~~~s~~~s  139 (338)
                      ++.+++++||+|||++|+++|.+|| .+|..||+.+ ++|++.|||.||..+|++.+++++|++.+.
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED   75 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE   75 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHH
Confidence            3578999999999999999999999 5799999988 599999999999999999999998887654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.06  E-value=3.1e-10  Score=77.47  Aligned_cols=44  Identities=34%  Similarity=0.749  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHh
Q 019619           82 AFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTL  125 (338)
Q Consensus        82 ~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~ll  125 (338)
                      +||+||+.+|++++.+|| .+|..||+.+++||..+|++||..++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.99  E-value=1.4e-10  Score=80.26  Aligned_cols=48  Identities=40%  Similarity=0.805  Sum_probs=44.2

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeecc
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      ++.||++||++|+.++..||..+|..||..|+ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999777999999998 9999999999987664

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.86  E-value=1.7e-09  Score=112.30  Aligned_cols=112  Identities=23%  Similarity=0.313  Sum_probs=91.0

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcC-----------------------CCCchhhhhhcCCcccccccce---eeeeeccC
Q 019619           23 NKLRKGLWSPEEDDKLIKYMLTNG-----------------------QGCWSDIARNAGLQRCGKSCRL---RWINYLRP   76 (338)
Q Consensus        23 ~~lkkg~WT~EEDe~L~~lV~~~G-----------------------~~~W~~IA~~m~~~Rt~~QCr~---Rw~n~L~p   76 (338)
                      .-++-+.|+++||+.|.+.|..|-                       .+.|..|...+| -|+...++.   |-++.|.+
T Consensus       304 ~e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~  382 (607)
T KOG0051|consen  304 DEINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN  382 (607)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc
Confidence            345568999999999999887652                       113778888888 699988877   43344443


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHH--hcCCCCCCC
Q 019619           77 DLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL--KNNPNAPTP  138 (338)
Q Consensus        77 ~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~--k~~~~s~~~  138 (338)
                        ++|.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+++++...  +.+.|+.++
T Consensus       383 --~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eE  443 (607)
T KOG0051|consen  383 --KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEE  443 (607)
T ss_pred             --ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHH
Confidence              8999999999999999999999999999999 9999999999999998774  556665443

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.84  E-value=9.8e-10  Score=74.94  Aligned_cols=44  Identities=36%  Similarity=0.734  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619           29 LWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        29 ~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      +||++||++|+.++..+|..+|..||+.|+ +|+..+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999777999999998 89999999999764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.11  E-value=1.1e-06  Score=90.80  Aligned_cols=113  Identities=20%  Similarity=0.174  Sum_probs=97.9

Q ss_pred             cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHH
Q 019619           13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELII   92 (338)
Q Consensus        13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLl   92 (338)
                      ...+|++...|.++++.|+.|||+.|+.+-..+|.. |..||..++ +|+..+|.+||.+.+.+..+ ..|+..+.....
T Consensus        58 ~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d-~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f  134 (512)
T COG5147          58 SSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKD-RRTAQQCVERYVNTLEDLSS-THDSKLQRRNEF  134 (512)
T ss_pred             ccchhhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccC-ccchHHHHHHHHHHhhhhhc-cccccccchhhc
Confidence            456888999999999999999999999999999987 999999998 99999999999999987665 789999988888


Q ss_pred             HHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619           93 HLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        93 elv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      -.+..|+..|..+....-.+-...|.|++.++..+.
T Consensus       135 ~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~  170 (512)
T COG5147         135 DKIDPFNENSARRPDIYEDELLEREVNREASYRLRV  170 (512)
T ss_pred             cccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHc
Confidence            888889888888887776777777777776555443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.79  E-value=1e-05  Score=60.61  Aligned_cols=49  Identities=12%  Similarity=0.260  Sum_probs=43.0

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCCc---hhhhhhcCCcc-cccccceeeeeec
Q 019619           26 RKGLWSPEEDDKLIKYMLTNGQGCW---SDIARNAGLQR-CGKSCRLRWINYL   74 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G~~~W---~~IA~~m~~~R-t~~QCr~Rw~n~L   74 (338)
                      ++-.||+||.++++++|..+|.++|   ..|++.|+..| +..||+.+++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998899   99999987567 9999998877664

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.77  E-value=5.5e-05  Score=56.64  Aligned_cols=47  Identities=13%  Similarity=0.255  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ch---HHHhccC-CCC-CHHHHHHHHHHHhH
Q 019619           80 RGAFSPQEEELIIHLHSILGN-RW---SQIAARL-PGR-TDNEIKNFWNSTLK  126 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~-kW---s~IA~~l-pgR-T~~q~KnRW~~llr  126 (338)
                      +-.||+||..++++++..||. +|   ..|++.| ..| |..||+.+++.+..
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999996 99   9999988 345 99999999876653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.55  E-value=2.2e-05  Score=79.21  Aligned_cols=50  Identities=24%  Similarity=0.549  Sum_probs=46.4

Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeec
Q 019619           24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL   74 (338)
Q Consensus        24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L   74 (338)
                      .+-..-||.+|+-+|++++..||-|||..||+.|| .|+..+|+++|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            45567899999999999999999999999999999 999999999998854

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.51  E-value=0.00016  Score=73.05  Aligned_cols=49  Identities=20%  Similarity=0.430  Sum_probs=44.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHh
Q 019619           77 DLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTL  125 (338)
Q Consensus        77 ~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~ll  125 (338)
                      .+-...||.+|+.+|++++..|| ++|..||.++..|+..+||.+|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            34456799999999999999999 99999999999999999999997655

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.46  E-value=0.00025  Score=65.52  Aligned_cols=101  Identities=21%  Similarity=0.362  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCchhhhhhcCC--cccccccceeeeeec-cCCCC--------------------CCCCCH
Q 019619           29 LWSPEEDDKLIKYMLTNGQGCWSDIARNAGL--QRCGKSCRLRWINYL-RPDLK--------------------RGAFSP   85 (338)
Q Consensus        29 ~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~--~Rt~~QCr~Rw~n~L-~p~lk--------------------kg~WT~   85 (338)
                      +|++++|-+|+.+|..-.  +-..|+..+..  .-|.+.+.+||+..| +|.+.                    +.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998766  46777765542  234455678998765 44443                    358999


Q ss_pred             HHHHHHHHHHHHhCC---chHHH----hccC-CCCCHHHHHHHHHHHhHHHHhc
Q 019619           86 QEEELIIHLHSILGN---RWSQI----AARL-PGRTDNEIKNFWNSTLKKILKN  131 (338)
Q Consensus        86 EED~lLlelv~~~G~---kWs~I----A~~l-pgRT~~q~KnRW~~llrk~~k~  131 (338)
                      +|+++|.........   .+.+|    ...| ++||+.++..+|+.+.+..+-.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~  132 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP  132 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence            999999998766543   46666    3334 8999999999999666555443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.32  E-value=0.00023  Score=63.51  Aligned_cols=54  Identities=19%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh---C----CchHHHhccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619           78 LKRGAFSPQEEELIIHLHSIL---G----NRWSQIAARLPGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~---G----~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      .+.+.||.|||.+|.+.|..|   |    .-...++..| +||+..|.-||++.+|+.+...
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            356789999999999999887   4    2488899999 9999999999999999887653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.00016  Score=74.44  Aligned_cols=61  Identities=26%  Similarity=0.436  Sum_probs=55.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCCC
Q 019619           78 LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTP  138 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~~  138 (338)
                      ++-+.|+.-||+.|..++.+|| +.|+.|++.++-.|+.||++||...+...+++-.|+...
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~ee   66 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREE   66 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhH
Confidence            5678899999999999999999 679999999999999999999999999999987776654

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.18  E-value=0.00042  Score=54.56  Aligned_cols=54  Identities=30%  Similarity=0.485  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------chHHHhccC----CCCCHHHHHHHHHHHhHHHHhcCC
Q 019619           80 RGAFSPQEEELIIHLHSI------LG--N------RWSQIAARL----PGRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~------~G--~------kWs~IA~~l----pgRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      +..||.+|...||++..+      ++  +      -|..||..|    ..||+.||++||.+|.++..+...
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~   72 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD   72 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            357999999999999877      22  1      399999976    479999999999998877766553

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.94  E-value=0.00081  Score=68.66  Aligned_cols=44  Identities=18%  Similarity=0.313  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHH
Q 019619           81 GAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNST  124 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~l  124 (338)
                      ..||.+|..+|++.+..||-.|.+||+++..||..||.-||-++
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            48999999999999999999999999999999999999999754

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.84  E-value=0.0014  Score=68.14  Aligned_cols=46  Identities=15%  Similarity=0.342  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHH
Q 019619           79 KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNST  124 (338)
Q Consensus        79 kkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~l  124 (338)
                      .+..||++|..+|++++..||-+|.+||.++.+||..||--||..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3568999999999999999999999999999999999999999654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.71  E-value=0.00054  Score=69.93  Aligned_cols=46  Identities=26%  Similarity=0.540  Sum_probs=42.5

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619           26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      +...||.+|..+|++.|+.||. +|.+||+++| +|+.-||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5679999999999999999995 5999999999 99999999999864

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.40  E-value=0.0013  Score=68.48  Aligned_cols=49  Identities=18%  Similarity=0.502  Sum_probs=43.7

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619           23 NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        23 ~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      ...-++.||.+|..+|+++|..||. +|.+||.+++ +|+..||..++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            3445789999999999999999995 5999999999 99999999998764

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.36  E-value=0.0056  Score=47.01  Aligned_cols=50  Identities=14%  Similarity=0.326  Sum_probs=32.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hHHHhccCC-CCCHHHHHHHHHHHhHHHH
Q 019619           80 RGAFSPQEEELIIHLHSILG--------NR-WSQIAARLP-GRTDNEIKNFWNSTLKKIL  129 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G--------~k-Ws~IA~~lp-gRT~~q~KnRW~~llrk~~  129 (338)
                      +.+||.|||..|++.+.++.        ++ |.++++.-+ .+|-.+.|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45899999999999997652        22 999999876 9999999999987776543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.33  E-value=0.0041  Score=56.19  Aligned_cols=52  Identities=17%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc-------hHHHhccCCCCCHHHHHHHHHHHhHHHHh
Q 019619           78 LKRGAFSPQEEELIIHLHSILGNR-------WSQIAARLPGRTDNEIKNFWNSTLKKILK  130 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G~k-------Ws~IA~~lpgRT~~q~KnRW~~llrk~~k  130 (338)
                      .+++.||.|||.+|.+.+..|+..       ...++..| +||..+|..||++.+|+...
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            456799999999999999888632       56667777 99999999999999996654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.23  E-value=0.01  Score=58.39  Aligned_cols=47  Identities=28%  Similarity=0.492  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619           80 RGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llr  126 (338)
                      -..|+.+|+.+|++....+| ++|..||.+++.|+..+||.+|..+..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34699999999999999999 999999999999999999999976554

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.15  E-value=0.0016  Score=58.27  Aligned_cols=50  Identities=28%  Similarity=0.616  Sum_probs=42.4

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCC------CCchhhhhhcCCcccccccceeeeeeccC
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQ------GCWSDIARNAGLQRCGKSCRLRWINYLRP   76 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~------~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p   76 (338)
                      .|...||.|||.+|.+.|.+|-.      ..+..|++.++  ||+.-|.-||.-++..
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            46789999999999999998842      14889999985  9999999999988763

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.02  E-value=0.018  Score=44.51  Aligned_cols=51  Identities=27%  Similarity=0.480  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-----------------CchHHHhccC-----CCCCHHHHHHHHHHHhHHHHh
Q 019619           80 RGAFSPQEEELIIHLHSILG-----------------NRWSQIAARL-----PGRTDNEIKNFWNSTLKKILK  130 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G-----------------~kWs~IA~~l-----pgRT~~q~KnRW~~llrk~~k  130 (338)
                      ...||.+|..+|++++.+|.                 ..|..|+..|     +.||..+||.+|..+.....+
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45799999999999998863                 1299999866     469999999999988766544

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.75  E-value=0.0022  Score=50.38  Aligned_cols=47  Identities=32%  Similarity=0.693  Sum_probs=32.0

Q ss_pred             ccCCCHHHHHHHHHHHHHc------C---C--C--Cchhhhhhc---CCcccccccceeeeee
Q 019619           27 KGLWSPEEDDKLIKYMLTN------G---Q--G--CWSDIARNA---GLQRCGKSCRLRWINY   73 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~------G---~--~--~W~~IA~~m---~~~Rt~~QCr~Rw~n~   73 (338)
                      +..||.+|...|++++...      +   .  .  -|..||..|   |..|++.||+.||.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            3579999999999988771      1   1  1  399999876   5679999999999874

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.69  E-value=0.0028  Score=62.28  Aligned_cols=49  Identities=27%  Similarity=0.492  Sum_probs=45.2

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeecc
Q 019619           26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      ----|+.+|+.+|++.....|-++|..||..+| .|....|+++|..++.
T Consensus        62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            345699999999999999999999999999999 9999999999998765

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.39  E-value=0.0057  Score=47.00  Aligned_cols=52  Identities=23%  Similarity=0.461  Sum_probs=31.9

Q ss_pred             ccCCCHHHHHHHHHHHHHcCC------C--CchhhhhhcCCcccccccceeeeeeccCCC
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQ------G--CWSDIARNAGLQRCGKSCRLRWINYLRPDL   78 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~------~--~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~l   78 (338)
                      +-+||.|||+.|+++|..+..      +  -|..+++.-+..++..+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            468999999999999976531      2  299999887546777778999998887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.24  E-value=0.066  Score=60.32  Aligned_cols=102  Identities=17%  Similarity=0.308  Sum_probs=76.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccce-------eee------------------------------
Q 019619           29 LWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRL-------RWI------------------------------   71 (338)
Q Consensus        29 ~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~-------Rw~------------------------------   71 (338)
                      -|+.-+=..++.++.+||..+-..||..|. +++...++.       ||.                              
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477777778888889999888999999986 777755542       111                              


Q ss_pred             -----------ee-c-cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhc------------cCCCCCHHHHHHHHHHHh
Q 019619           72 -----------NY-L-RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAA------------RLPGRTDNEIKNFWNSTL  125 (338)
Q Consensus        72 -----------n~-L-~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~------------~lpgRT~~q~KnRW~~ll  125 (338)
                                 .. + .+..++..+|+|||+.|+-++.+|| .+|..|-.            +|..||+..|..|...|+
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                       10 0 1233445699999999999999999 77998832            225899999999999998


Q ss_pred             HHHHhc
Q 019619          126 KKILKN  131 (338)
Q Consensus       126 rk~~k~  131 (338)
                      +-..+.
T Consensus       985 ~~~~~e  990 (1033)
T PLN03142        985 RLIEKE  990 (1033)
T ss_pred             HHHHHH
Confidence            876544

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.67  E-value=0.0066  Score=46.99  Aligned_cols=49  Identities=27%  Similarity=0.436  Sum_probs=39.1

Q ss_pred             cccCCCHHHHHHHHHHHHHcC----------------CCCchhhhhhc----CCcccccccceeeeeec
Q 019619           26 RKGLWSPEEDDKLIKYMLTNG----------------QGCWSDIARNA----GLQRCGKSCRLRWINYL   74 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G----------------~~~W~~IA~~m----~~~Rt~~QCr~Rw~n~L   74 (338)
                      |+..||++|.+.|+++|.+|.                ...|..|+..+    +..|+..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            467899999999999998873                12399999866    22689999999988754

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.41  E-value=0.0095  Score=53.90  Aligned_cols=50  Identities=24%  Similarity=0.556  Sum_probs=40.0

Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCC------CchhhhhhcCCcccccccceeeeeecc
Q 019619           24 KLRKGLWSPEEDDKLIKYMLTNGQG------CWSDIARNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        24 ~lkkg~WT~EEDe~L~~lV~~~G~~------~W~~IA~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      +.|...||.|||.+|.+.|..|+..      ....++..+.  |++..|..||.-+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            4578899999999999999988632      2566667774  999999999965554

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.84  E-value=0.12  Score=50.83  Aligned_cols=54  Identities=20%  Similarity=0.328  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCchHHHhccC----CCCCHHHHHHHHHHHhHHHHhcCC
Q 019619           80 RGAFSPQEEELIIHLHSIL----------GNRWSQIAARL----PGRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~----------G~kWs~IA~~l----pgRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      ...|+.+|-..||++..+.          +..|..||+.+    --||+.+||+||.++.++..+.+.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~  121 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKA  121 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            4689999999999998753          24599999954    569999999999999988777653

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.56  E-value=0.11  Score=52.45  Aligned_cols=86  Identities=21%  Similarity=0.330  Sum_probs=65.1

Q ss_pred             CchhhhhhcCCcccccccceeeeeeccCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCchH
Q 019619           49 CWSDIARNAGLQRCGKSCRLRWINYLRPD-------------------------LKRGAFSPQEEELIIHLHSILGNRWS  103 (338)
Q Consensus        49 ~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~-------------------------lkkg~WT~EED~lLlelv~~~G~kWs  103 (338)
                      .|.-+.=..+ -|...-...+|...-++.                         +....||.||-+-|.++++.|.-+|.
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4666653333 566666677777663221                         11246999999999999999999999


Q ss_pred             HHhcc-----CCC-CCHHHHHHHHHHHhHHHHhcCCCC
Q 019619          104 QIAAR-----LPG-RTDNEIKNFWNSTLKKILKNNPNA  135 (338)
Q Consensus       104 ~IA~~-----lpg-RT~~q~KnRW~~llrk~~k~~~~s  135 (338)
                      -|+.+     ++. ||-.++|.||..+.++.++....+
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            99987     655 999999999999999998876433

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.96  E-value=0.38  Score=38.15  Aligned_cols=47  Identities=26%  Similarity=0.541  Sum_probs=35.9

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------chHHHhccC-----CCCCHHHHHHHHHHHhHHH
Q 019619           82 AFSPQEEELIIHLHSIL---GN----------RWSQIAARL-----PGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        82 ~WT~EED~lLlelv~~~---G~----------kWs~IA~~l-----pgRT~~q~KnRW~~llrk~  128 (338)
                      .||+++++.|++++.+.   |+          .|..|+..|     ...+..||++||..+.+..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            49999999999998653   21          299998876     3357789999998766644

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.86  E-value=0.25  Score=49.91  Aligned_cols=46  Identities=28%  Similarity=0.320  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619           81 GAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llr  126 (338)
                      .+|+.+|-+++..+...+|..+..|+..||.|...|||.+|.+--|
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            4799999999999999999999999999999999999999975443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.93  E-value=0.33  Score=41.45  Aligned_cols=54  Identities=24%  Similarity=0.452  Sum_probs=42.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----chHHHhcc------------CCCCCHHHHHHHHHHHhHHHHh
Q 019619           77 DLKRGAFSPQEEELIIHLHSILGN----RWSQIAAR------------LPGRTDNEIKNFWNSTLKKILK  130 (338)
Q Consensus        77 ~lkkg~WT~EED~lLlelv~~~G~----kWs~IA~~------------lpgRT~~q~KnRW~~llrk~~k  130 (338)
                      ..++..||++||..|+-++.+||-    .|..|-..            |..||+..|..|-..|++-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            556778999999999999999995    79888442            2569999999999999876544

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=88.50  E-value=0.87  Score=47.06  Aligned_cols=48  Identities=17%  Similarity=0.322  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           80 RGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      ...||.||--++-+++..||++..+|-+.||.|+-..+...|....+.
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999888655543

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=82.74  E-value=15  Score=37.32  Aligned_cols=44  Identities=16%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhc-cCCCCCHHHHHHHHHHH
Q 019619           81 GAFSPQEEELIIHLHSILGNRWSQIAA-RLPGRTDNEIKNFWNST  124 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G~kWs~IA~-~lpgRT~~q~KnRW~~l  124 (338)
                      ..|+++|-+.+-+.++.||++...|.+ .++.|+--.|-..|...
T Consensus       278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlW  322 (445)
T KOG4329|consen  278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLW  322 (445)
T ss_pred             ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHh
Confidence            379999999999999999999999977 67999999998877543

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=82.67  E-value=2.5  Score=46.09  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=38.5

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeee
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWIN   72 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n   72 (338)
                      .-+||+.|-.++.+++..|. +++-.|++.++ +++.+||-+-|+.
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~-~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVK-SKTVAQCVEYYYT  662 (907)
T ss_pred             cccccHHHHHHHHHHHHHhc-ccHHHHHHHhc-cccHHHHHHHHHH
Confidence            35899999999999999998 56999999998 9999999886653

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=82.49  E-value=3.4  Score=29.32  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           85 PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        85 ~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      +++++.++.++-..|-.|.+||..+ |.|...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4677888899999999999999999 99999999988766554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=81.25  E-value=1.5  Score=37.49  Aligned_cols=34  Identities=29%  Similarity=0.526  Sum_probs=28.9

Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCC---CCchhhhhhc
Q 019619           24 KLRKGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNA   57 (338)
Q Consensus        24 ~lkkg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m   57 (338)
                      ..++..||.+||.-|+-++.+||.   +.|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            777899999999999999999998   8899997755

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		5e-23
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-22
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		4e-22
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		5e-22
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		7e-22
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		4e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-10
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-09
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		7e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-05
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-05
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-04

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
           L KG W+ EED ++I+++   G   WSDIA++    R GK CR RW N+L P++K+ +++
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 85  PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
            +E+ +I   H  LGNRW++IA  LPGRTDN +KN WNST+++
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
           L KG W+ EED K+I+ +   G   W+ IA++    R GK CR RW N+L P++K+ +++
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 85  PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
            +E+ +I   H +LGNRW++IA  LPGRTDN +KN WNST+K+
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKR 106

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 24  KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
           +L KG W+ EED ++IK +   G   WS IA++    R GK CR RW N+L P++K+ ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59
Query: 84  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
           + +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST+++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  101 bits (252), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
           L KG W+ EED ++IK +   G   WS IA++    R GK CR RW N+L P++K+ +++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 85  PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
            +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST+++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
           L KG W+ EED ++IK +   G   WS IA++    R GK CR RW N+L P++K+ +++
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 85  PQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
            +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST+++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 27  KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
           KG ++  EDD + +Y+  NG   W  I  +    R  K CR RW N+L P + + A++P+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 87  EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
           E+E I   +  LG++WS IA  +PGRTDN IKN WNS++ K
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISK 101

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 17  NINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRP 76
            +N KA K +K  ++PEED+ L + +  +G   W  IA      R  + CR RW NYL P
Sbjct: 3   QVNLKAAKKQK--FTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAP 58
Query: 77  DLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128
            +    ++ +E+ L++      G +W+ IA   PGRTD  IKN W +   K+
Sbjct: 59  SISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 78  LKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
           +K+ +++ +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST+++
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 50

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 39/51 (76%)
Query: 77  DLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
           ++K+ +++ +E+ ++   H  LGNRW++IA  LPGRTDN IKN WNST+++
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 52

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 31  SPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEL 90
           + EED KL + ++  G   W  I++   + R  + CR RW NY+ P L+   +SP+E+ L
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 91  IIHLHSILGNRWSQIAARLPGRTDNEIKNFW 121
           +   ++  G +W++I+  L  R+DN I+N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
          L KG W+ EED +LIK +   G   WS IA++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
          L KG W+ EED ++IK +   G   WS IA++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
          L KG W+ EED ++I+ +   G   WS IA++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-66
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	6e-66
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	5e-65
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-57
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-55
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-32
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-06
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-54
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	8e-25
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	7e-05
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-22
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-05
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	5e-20
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	8e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-15
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-05
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	5e-09
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	6e-09
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-07
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	6e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	9e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	4e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	4e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	3e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	4e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	8e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  203 bits (518), Expect = 2e-66
 Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 24  KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
           +L KG W+ EED ++IK +   G   WS IA++    R GK CR RW N+L P++K+ ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 84  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
           + +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST+++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  203 bits (518), Expect = 6e-66
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 27  KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
           KG ++  EDD + +Y+  NG   W  I       R  K CR RW N+L P + + A++P+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 87  EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTPSPNNSDSS 146
           E+E I   +  LG++WS IA  +PGRTDN IKN WNS++ K +  N N       +    
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 147 EPRGVIA 153
                + 
Sbjct: 121 RKAADVP 127

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  200 bits (512), Expect = 5e-65
 Identities = 48/104 (46%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 24  KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
           +L KG W+ EED ++I+++   G   WSDIA++    R GK CR RW N+L P++K+ ++
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 82

Query: 84  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
           + +E+ +I   H  LGNRW++IA  LPGRTDN +KN WNST+++
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  180 bits (460), Expect = 3e-57
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 23  NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGA 82
              +K  ++PEED+ L + +  +G   W  IA      R  + CR RW NYL P +    
Sbjct: 7   KAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTP 64

Query: 83  FSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTPSPNN 142
           ++ +E+ L++      G +W+ IA   PGRTD  IKN W +   K+            ++
Sbjct: 65  WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHHHH 124

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  176 bits (449), Expect = 3e-55
 Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 24  KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAF 83
           +L KG W+ EED ++IK +   G   WS IA++    R GK CR RW N+L P++K+ ++
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 84  SPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK 127
           + +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST+++
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  118 bits (298), Expect = 1e-32
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 84
           L K  W+ EED+KL K +  NG   W  IA      R    C+ RW   L P+L +G ++
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 85  PQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP 133
            +E++ +I L    G  RWS IA  L GR   + +  W++ L   +K   
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 112

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 25  LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ-RCGKSCRLRWINYLRPDL 78
           ++K  W+ EED  + +     G   W++IA+   L  R   + +  W + +R  +
Sbjct: 108 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKL--LPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  173 bits (440), Expect = 1e-54
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 1/108 (0%)

Query: 27  KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 86
           K  ++ EED KL + ++  G   W  I++     R  + CR RW NY+ P L+   +SP+
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 87  EEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPN 134
           E+ L+   ++  G +W++I+  L  R+DN I+N W    +   K+  +
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 94.1 bits (235), Expect = 8e-25
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
          L KG W+ EED +LIK +   G   WS IA++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 78  LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRT 113
           L +G ++ +E++ +I L    G  RWS IA  L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 88.9 bits (221), Expect = 1e-22
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 23 NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGA 82
          +  + G+W   ED+ L   ++  G+  WS IA     ++  K C+ RW  +L P +K+  
Sbjct: 5  SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 83 FSPQEE 88
          +S    
Sbjct: 64 WSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 75  RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTD 114
               K G +   E+E++       G N+WS+IA+ L  ++ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 81.1 bits (201), Expect = 5e-20
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
          L K  W+ EED+KL K +  NG   W  IA      R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 44.5 bits (106), Expect = 8e-07
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 78  LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLK 126
           L +  ++ +E+E +  L    G + W  IA  LP RTD + ++ W   L 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 23 NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLK 79
              K  W+ EED++L   +   GQ  W  +A +    R  + C+ RW+  L     
Sbjct: 4  GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 75  RPDLKRGAFSPQEEELIIHLHSILGNR-WSQIAARLPGRTD 114
                +  ++ +E+E +  L    G + W  +A+  P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 9/64 (14%)

Query: 22 ANKLRKGLWSPEEDDKLI---KYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDL 78
           +  +K  WS EE++KL+   K M T     W  IA   G  R    C   +   L    
Sbjct: 4  GSSGKKTEWSREEEEKLLHLAKLMPTQ----WRTIAPIIG--RTAAQCLEHYEFLLDKAA 57

Query: 79 KRGA 82
          +R +
Sbjct: 58 QRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 48.3 bits (115), Expect = 5e-08
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 78  LKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILK 130
            K+  +S +EEE ++HL  ++  +W  I A + GRT  +    +   L K  +
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQ 58

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ-RCGKSCRLRWINYLR 75
          ++  W  EED  L   +   G+G WS I  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 52.0 bits (124), Expect = 6e-09
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 15  GSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ---RCGKSCRLRWI 71
           GS++     +  +  +S  E + L++ +   G G W D+   A      R     + +W 
Sbjct: 1   GSHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWK 60

Query: 72  NYLR-----PDLKRGAFSPQE-EELIIHLHSILGNRWSQIAAR 108
             +      P  +RG   PQE    +++ H     +  Q   +
Sbjct: 61  TLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 19 NAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ-RCGKSCRLRWINYLRPD 77
          ++  N  +K  W+ EE + +   +   G+G W+ I++N     R     + RW    R  
Sbjct: 3  DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62

Query: 78 L 78
          +
Sbjct: 63 M 63

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 13  VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNA---GLQRCGKSCRLR 69
           ++ S       +  +  ++  E + L++ +   G G W D+   A      R     + +
Sbjct: 17  LSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDK 76

Query: 70  WINYLR-----PDLKRGAFSPQEEEL-IIHLHSILGNRWS 103
           W   +      P  +RGA  PQE    ++   +      S
Sbjct: 77  WKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74
            +       W+ +E+  L++ ++  G G W D+A      +  + C   ++ Y 
Sbjct: 1  GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ-RCGKSCRLRWINYLRPDLK 79
          K    ++  W  EED  L   +   G+G WS I  +     R     + RW       +K
Sbjct: 4  KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT-----MK 58

Query: 80 RGAFSPQEEE 89
          +      + E
Sbjct: 59 KLKLISSDSE 68

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 67  RLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK 126
                +  R +L    ++ +E           G  WS IA  +  +T ++ KNF+ +  K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 127 KI 128
           + 
Sbjct: 63  RQ 64

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 26  RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ---RCGKSCRLRWINYLR-----PD 77
            +  +S  E + L++ +   G G W D+   A      R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 78  LKRGAFSPQE-EELIIHLHSILGNRWS 103
            +RG   PQ+  + ++  H+    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 30  WSPEEDDKLIKYMLTNGQGCWSDIARNA---GLQRCGKSCRLRWINYLR-----PDLKRG 81
           +S  E + L++ +   G G W D+   A      R     + +W   +      P  +RG
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 82  AFSPQEEEL-IIHLHSILGNR 101
              PQ+    ++  H+    +
Sbjct: 63  EPVPQDLLDRVLAAHAYWSQQ 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 54/352 (15%), Positives = 101/352 (28%), Gaps = 115/352 (32%)

Query: 9   KERLVNGSNINAKAN--------KLRKGLWSPEEDDKLIKY-MLTNGQGC---W--SDIA 54
           ++RL N + + AK N        KLR+ L        ++   +L    G    W   D+ 
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL----GSGKTWVALDVC 171

Query: 55  RNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTD 114
            +  +Q C    ++ W+N    +          E ++     +L     QI      R+D
Sbjct: 172 LSYKVQ-CKMDFKIFWLNLKNCN--------SPETVLE----MLQKLLYQIDPNWTSRSD 218

Query: 115 NEIK-----NFWNSTLKKILKNNPNAPTPSPNNS-----DSSEPRGVIAGIMPMPNDHDI 164
           +        +   + L+++LK+ P        N      +    +          N  ++
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPY------ENCLLVLLNVQNAK-AW-------NAFNL 264

Query: 165 MTMCMDSSSSSSTSIQTMVTSNNSQLIDPFSMLDTRYDMTSASCLFNNMPTCTAQVDHTG 224
              C           + ++T+   Q+ D F    T   ++               +DH  
Sbjct: 265 S--C-----------KILLTTRFKQVTD-FLSAATTTHIS---------------LDHHS 295

Query: 225 DGLFYEDY--GILEPSKMGLEGDLSLP-------PLESRSIEENNSNAAKNNHNYNVDLK 275
                 D    +L    +       LP       P     I E+  +      N+     
Sbjct: 296 MT-LTPDEVKSLLL-KYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWK---- 348

Query: 276 GNNNNHYTNNSCFNNTIDQGIKVGDMLGLENNWQGENLRVGEWDLEGFMDNI 327
                 + N       I+  + V     LE        R     L  F  + 
Sbjct: 349 ------HVNCDKLTTIIESSLNV-----LEPA----EYRKMFDRLSVFPPSA 385

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ-RCGKSCRLRWINYLRPDL 78
          +K  W+ EE + +   +   G+G W+ I++N     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 79  KRGAFSPQEEELIIHLHSILGN-RWSQIAARLP--GRTDNEIKNFWNSTLKKI 128
           K+  ++ +E E +       G   W+ I+   P   RT   IK+ W  T+K++
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKRL 52

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 14/69 (20%), Positives = 30/69 (43%)

Query: 75  RPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPN 134
                   ++ +E+EL     +  G RW++I+  +  RT  ++K++     K  +K   +
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 135 APTPSPNNS 143
             TP+    
Sbjct: 64  KETPNQKTG 72

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 30 WSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY 73
          W  +E+  LI    T G G W+DIA   G  R  + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRG 81
           G ++PEE +KL +  + +G   W+ I    G  R   S + R    ++     G
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 79  KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNA 135
             G ++P+E E +  L    GN W+ I A L GR+ + +K+       +++K+  N 
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC-----RLMKDTCNT 72

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 26 RKGLWSPEEDDKLIKY-----MLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKR 80
           K  ++ EED+ ++               + +I+        G S R R+  YL   L+ 
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 81 GAFSPQEEELI 91
               +  +L+
Sbjct: 66 VYEVDKFGKLV 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.83
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.74
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.71
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.69
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.67
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.67
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.66
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.65
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.64
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.64
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.62
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.56
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.55
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.55
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.53
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.5
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.49
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.49
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.47
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.17
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.43
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.41
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.37
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.37
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.37
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.36
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.36
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.31
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.31
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.3
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.29
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.29
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.25
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.87
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.22
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.21
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.2
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.17
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.16
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.13
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.95
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.94
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.91
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.82
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.74
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.66
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.63
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.58
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.57
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.48
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.32
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.31
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.29
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.2
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.18
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.17
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.05
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.01
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.19
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.9
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.85
2crg_A	70	Metastasis associated protein MTA3; transcription	97.72
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.7
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.64
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.3
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.28
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.09
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.01
2crg_A	70	Metastasis associated protein MTA3; transcription	96.96
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.96
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.83
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.8
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.69
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.66
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.08
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.83
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	91.36
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.39
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.22
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	88.3

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=1.4e-33  Score=230.70  Aligned_cols=104  Identities=47%  Similarity=0.885  Sum_probs=99.6

Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchH
Q 019619           24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWS  103 (338)
Q Consensus        24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs  103 (338)
                      .+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999888999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCHHHHHHHHHHHhHHH
Q 019619          104 QIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus       104 ~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      .||+.|||||+++||+||+.+++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=1.6e-33  Score=231.84  Aligned_cols=105  Identities=31%  Similarity=0.571  Sum_probs=101.4

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHh
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIA  106 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA  106 (338)
                      ||+||+|||++|+++|..||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|++++.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999888999999998 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619          107 ARLPGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus       107 ~~lpgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      +.|||||+++||+||+.++++..+..
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~~  105 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKHQ  105 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence            99999999999999999999877654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.98  E-value=2.6e-33  Score=237.05  Aligned_cols=115  Identities=42%  Similarity=0.790  Sum_probs=103.2

Q ss_pred             cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHH
Q 019619           13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELII   92 (338)
Q Consensus        13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLl   92 (338)
                      -..+|.+...|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+
T Consensus        13 C~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~   91 (128)
T 1h8a_C           13 CQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIY   91 (128)
T ss_dssp             ---------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHH
Confidence            4678999999999999999999999999999999888999999998 999999999999999999999999999999999


Q ss_pred             HHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619           93 HLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        93 elv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      +++.+||++|..||+.|||||+++||+||+.+++++
T Consensus        92 ~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           92 QAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999998875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=5.1e-33  Score=236.49  Aligned_cols=110  Identities=41%  Similarity=0.718  Sum_probs=105.0

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHh
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIA  106 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA  106 (338)
                      ||+||+|||++|+++|..||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|..||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhHHHHhcCCCCCC
Q 019619          107 ARLPGRTDNEIKNFWNSTLKKILKNNPNAPT  137 (338)
Q Consensus       107 ~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~  137 (338)
                      +.|+|||+++||+||+.++++.+....+...
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~  111 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKE  111 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence            9999999999999999999998887755443

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=1.3e-32  Score=232.74  Aligned_cols=106  Identities=33%  Similarity=0.642  Sum_probs=101.3

Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019619           21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN  100 (338)
Q Consensus        21 k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~  100 (338)
                      ..+..++|+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            357889999999999999999999997 7999999998 99999999999999999999999999999999999999999


Q ss_pred             chHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619          101 RWSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus       101 kWs~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      +|..||+.|+|||+++||+||..++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999998774

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=4.3e-31  Score=230.82  Aligned_cols=115  Identities=43%  Similarity=0.775  Sum_probs=109.5

Q ss_pred             cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHH
Q 019619           13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELII   92 (338)
Q Consensus        13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLl   92 (338)
                      ...+|.+...|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+
T Consensus        44 cr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~  122 (159)
T 1h89_C           44 CQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIY  122 (159)
T ss_dssp             HHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHH
T ss_pred             HHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHH
Confidence            4457888889999999999999999999999999878999999998 999999999999999999999999999999999


Q ss_pred             HHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619           93 HLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        93 elv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      +++.+||++|..||+.|||||+++||+||+.+++++
T Consensus       123 ~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          123 QAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=4.9e-30  Score=224.14  Aligned_cols=113  Identities=33%  Similarity=0.611  Sum_probs=67.6

Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 019619           24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN-RW  102 (338)
Q Consensus        24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~-kW  102 (338)
                      .+++++||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            46799999999999999999999889999999998 99999999999999999999999999999999999999995 79


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCC
Q 019619          103 SQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPT  137 (338)
Q Consensus       103 s~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~  137 (338)
                      ..||..|+|||+.||++||..++++.++..+|+..
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~e  116 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE  116 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChH
Confidence            99999999999999999999999877766666543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.83  E-value=3.3e-21  Score=162.71  Aligned_cols=84  Identities=26%  Similarity=0.567  Sum_probs=58.1

Q ss_pred             hhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHHHHhc
Q 019619           53 IARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKKILKN  131 (338)
Q Consensus        53 IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~  131 (338)
                      ||+.|+ +|++.||++||.++|+|.+++++||+|||++|++++.+||. +|..||..|+|||+.||++||..+|.+.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788997 99999999999999999999999999999999999999995 7999999999999999999999999887777


Q ss_pred             CCCCCC
Q 019619          132 NPNAPT  137 (338)
Q Consensus       132 ~~~s~~  137 (338)
                      ++|+..
T Consensus        80 ~~WT~e   85 (128)
T 1h8a_C           80 TSWTEE   85 (128)
T ss_dssp             SCCCHH
T ss_pred             ccCCHH
Confidence            766544

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=8.9e-22  Score=150.41  Aligned_cols=66  Identities=27%  Similarity=0.619  Sum_probs=63.8

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHH
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEE   88 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED   88 (338)
                      .+.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            5789999999999999999999999888999999998 99999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.74  E-value=1.2e-18  Score=161.41  Aligned_cols=106  Identities=19%  Similarity=0.270  Sum_probs=92.2

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCCC-----chhhhhhcCCcccccccceeeeeeccCCCC-----------------
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQGC-----WSDIARNAGLQRCGKSCRLRWINYLRPDLK-----------------   79 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~-----W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lk-----------------   79 (338)
                      .+.+++++||+|||++|+++|.++|...     |..||+.|+ |||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3567899999999999999999998643     999999998 99999999999999999986                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 019619           80 ------------RGAFSPQEEELIIHLHSI-L--------------------------------GN--------------  100 (338)
Q Consensus        80 ------------kg~WT~EED~lLlelv~~-~--------------------------------G~--------------  100 (338)
                                  +..||.|||..|+..+++ |                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999999877 2                                11              


Q ss_pred             -----------chHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619          101 -----------RWSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus       101 -----------kWs~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                                 .|.+||+.+|+||.+++|+||+.+++..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       6999999999999999999999988765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.71  E-value=5.6e-18  Score=131.25  Aligned_cols=59  Identities=24%  Similarity=0.375  Sum_probs=47.8

Q ss_pred             ceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619           67 RLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        67 r~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llr  126 (338)
                      --||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 9999999999986543

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.69  E-value=6.2e-18  Score=142.61  Aligned_cols=86  Identities=16%  Similarity=0.318  Sum_probs=79.7

Q ss_pred             ccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhc----CCcccccccceeeeeecc-----CCCCCC-CCCHHH
Q 019619           18 INAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNA----GLQRCGKSCRLRWINYLR-----PDLKRG-AFSPQE   87 (338)
Q Consensus        18 ~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m----~~~Rt~~QCr~Rw~n~L~-----p~lkkg-~WT~EE   87 (338)
                      ....++..++++||+|||+.|+++|.+||.++|+.|++.+    + +||..||++||.++|+     |.++++ +|++||
T Consensus         8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~   86 (121)
T 2juh_A            8 RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDL   86 (121)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHH
T ss_pred             CccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHH
Confidence            3445788999999999999999999999998999999985    5 8999999999999998     999999 999999


Q ss_pred             HHHHHHHHHHhCCchHH
Q 019619           88 EELIIHLHSILGNRWSQ  104 (338)
Q Consensus        88 D~lLlelv~~~G~kWs~  104 (338)
                      +.+|++++..+|++|.+
T Consensus        87 ~~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           87 LDRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHccchhc
Confidence            99999999999999976

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=7.6e-17  Score=121.64  Aligned_cols=60  Identities=25%  Similarity=0.428  Sum_probs=57.6

Q ss_pred             eccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCC
Q 019619           73 YLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus        73 ~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      +|+|.+++++||+|||++|++++.+||.+|..||+ ++|||+.|||+||+.++++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999988764

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.67  E-value=1.2e-16  Score=122.60  Aligned_cols=59  Identities=20%  Similarity=0.278  Sum_probs=56.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619           74 LRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        74 L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      ++|.+++++||+|||++|++++.+||.+|..||++|+|||+.|||+||+.++++..+.+
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g   61 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   61 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999999999987764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=2.5e-17  Score=121.96  Aligned_cols=57  Identities=26%  Similarity=0.479  Sum_probs=54.2

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCC
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLK   79 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lk   79 (338)
                      .|.+++++||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            5789999999999999999999999878999999998 99999999999999999875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.65  E-value=5.2e-17  Score=137.13  Aligned_cols=84  Identities=19%  Similarity=0.303  Sum_probs=76.1

Q ss_pred             cccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhc----CCcccccccceeeeeec-----cCCCCCCCCCHHH
Q 019619           17 NINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNA----GLQRCGKSCRLRWINYL-----RPDLKRGAFSPQE   87 (338)
Q Consensus        17 ~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m----~~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EE   87 (338)
                      .........++++||+|||+.|+++|++||.++|+.|++.+    + +|+..||++||.+++     +|.++++.|+++|
T Consensus        21 ~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e   99 (122)
T 2roh_A           21 KRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQE   99 (122)
T ss_dssp             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHH
T ss_pred             CCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHH
Confidence            34445677889999999999999999999998999999864    5 899999999999999     8999999999999


Q ss_pred             -HHHHHHHHHHhCCc
Q 019619           88 -EELIIHLHSILGNR  101 (338)
Q Consensus        88 -D~lLlelv~~~G~k  101 (338)
                       +.+|++++..||++
T Consensus       100 ~~~~v~~~h~~~g~~  114 (122)
T 2roh_A          100 LLDRVLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhhH
Confidence             89999999999975

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.64  E-value=3e-17  Score=118.26  Aligned_cols=52  Identities=48%  Similarity=0.853  Sum_probs=49.6

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD   77 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~   77 (338)
                      +++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999878999999998 999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.64  E-value=4.7e-17  Score=123.90  Aligned_cols=65  Identities=23%  Similarity=0.330  Sum_probs=59.8

Q ss_pred             ccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCC-cccccccceeeeeeccCCCCCCCCC
Q 019619           20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGL-QRCGKSCRLRWINYLRPDLKRGAFS   84 (338)
Q Consensus        20 ~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~-~Rt~~QCr~Rw~n~L~p~lkkg~WT   84 (338)
                      .+.+..++++||+|||++|+++|.+||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4578889999999999999999999998889999999965 8999999999999999999988764

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=3.2e-16  Score=119.45  Aligned_cols=64  Identities=23%  Similarity=0.364  Sum_probs=60.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCCC
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTP  138 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~~  138 (338)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|++||+.|||+||..+|++.+++.+|+..+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE   68 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS   68 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence            4678999999999999999999999 899999999999999999999999999999999887664

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.62  E-value=5.3e-17  Score=116.84  Aligned_cols=52  Identities=38%  Similarity=0.683  Sum_probs=48.2

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD   77 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~   77 (338)
                      +++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999878999999998 999999999999999984

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=4.9e-16  Score=114.97  Aligned_cols=55  Identities=22%  Similarity=0.395  Sum_probs=51.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKIL  129 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk~~  129 (338)
                      +|.+++++||+|||++|+++|.+|| ++|..||+.|++||+.|||+||+.+|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 699999999999999999999999987654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.58  E-value=1.7e-15  Score=108.87  Aligned_cols=50  Identities=30%  Similarity=0.541  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           78 LKRGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      +++++||+|||++|++++.+||. +|..||+.|+|||+.||++||+.+|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 999999999999999999999999864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.56  E-value=3.6e-15  Score=107.29  Aligned_cols=50  Identities=32%  Similarity=0.661  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           78 LKRGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      +++++||+|||++|++++.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999996 699999999999999999999998854

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.55  E-value=6.5e-15  Score=112.00  Aligned_cols=59  Identities=24%  Similarity=0.286  Sum_probs=54.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC--CCCHHHHHHHHHHHhHHHHhcC
Q 019619           74 LRPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLP--GRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        74 L~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp--gRT~~q~KnRW~~llrk~~k~~  132 (338)
                      .++..++++||+|||++|+++|.+|| ++|..||..|+  |||+.|||+||+.+|++.+.+.
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            45678899999999999999999999 79999999999  9999999999999999876654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.55  E-value=7.2e-16  Score=116.34  Aligned_cols=57  Identities=25%  Similarity=0.448  Sum_probs=49.2

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC-CcccccccceeeeeeccCCCC
Q 019619           23 NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG-LQRCGKSCRLRWINYLRPDLK   79 (338)
Q Consensus        23 ~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~-~~Rt~~QCr~Rw~n~L~p~lk   79 (338)
                      ...+|++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||.++++|.++
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            445789999999999999999999989999999854 289999999999999988763

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=9.9e-16  Score=113.71  Aligned_cols=55  Identities=18%  Similarity=0.508  Sum_probs=51.5

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD   77 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~   77 (338)
                      .+.+++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            4678999999999999999999999888999999998 999999999999999764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.55  E-value=5.9e-15  Score=106.74  Aligned_cols=49  Identities=27%  Similarity=0.366  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC--CCCHHHHHHHHHHHhHH
Q 019619           79 KRGAFSPQEEELIIHLHSILG-NRWSQIAARLP--GRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        79 kkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp--gRT~~q~KnRW~~llrk  127 (338)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6.5e-15  Score=113.54  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC------CchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCC
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILG------NRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G------~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      +|.+.+++||+|||++|++++.+||      ++|..||++|+|||+.|||+||+.+|++..+.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            5788999999999999999999999      7999999999999999999999999988776653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.53  E-value=8.7e-15  Score=108.61  Aligned_cols=53  Identities=15%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      ++.+.+++||+|||++|++++.+|| ++|..||+.|++||+.|||+||..++..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678899999999999999999999 8999999999999999999999988753

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.1e-15  Score=115.18  Aligned_cols=58  Identities=24%  Similarity=0.338  Sum_probs=53.1

Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCC
Q 019619           21 KANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRG   81 (338)
Q Consensus        21 k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg   81 (338)
                      ..|.+++++||+|||++|+++|..+|. +|..||+ ++ +|+++||++||.++|+|.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            468999999999999999999999997 7999999 65 7999999999999999877654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=2.2e-14  Score=108.15  Aligned_cols=52  Identities=23%  Similarity=0.407  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC--CCCHHHHHHHHHHHhHHHH
Q 019619           78 LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLP--GRTDNEIKNFWNSTLKKIL  129 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp--gRT~~q~KnRW~~llrk~~  129 (338)
                      .++++||+|||++|+++|.+|| ++|..||+.++  +||+.|||+||++++|..+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            5788999999999999999999 69999999865  9999999999999988643

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.5e-15  Score=115.83  Aligned_cols=60  Identities=25%  Similarity=0.397  Sum_probs=55.7

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCC-----CCchhhhhhcCCcccccccceeeeeeccCCCCCCC
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQ-----GCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGA   82 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~-----~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~   82 (338)
                      +|.+++++||+|||++|+++|..||.     .+|..||+.|+ +|+.+||+.||.+||.+.++.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            68899999999999999999999996     67999999998 99999999999999998877664

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.49  E-value=4.6e-15  Score=107.33  Aligned_cols=50  Identities=26%  Similarity=0.445  Sum_probs=46.4

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCC-cccccccceeeeeecc
Q 019619           26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGL-QRCGKSCRLRWINYLR   75 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~-~Rt~~QCr~Rw~n~L~   75 (338)
                      ++++||+|||++|+++|.+||.++|..||+.|+. +|++.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998889999999965 6999999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.48  E-value=5.5e-15  Score=109.14  Aligned_cols=51  Identities=29%  Similarity=0.460  Sum_probs=46.8

Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeec
Q 019619           24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL   74 (338)
Q Consensus        24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L   74 (338)
                      .+.+++||+|||++|+++|.+||.++|..||+.|+.+|+++||++||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            356889999999999999999998899999999976899999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.47  E-value=5.9e-14  Score=103.56  Aligned_cols=50  Identities=26%  Similarity=0.413  Sum_probs=46.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCC-CCCHHHHHHHHHHHh
Q 019619           76 PDLKRGAFSPQEEELIIHLHSILG-NRWSQIAARLP-GRTDNEIKNFWNSTL  125 (338)
Q Consensus        76 p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lp-gRT~~q~KnRW~~ll  125 (338)
                      ..+.+++||+|||++|++++.+|| ++|..||++|+ +||+.|||+||..++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346788999999999999999999 89999999999 999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.17  E-value=7e-15  Score=117.53  Aligned_cols=58  Identities=22%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             eeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619           72 NYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKIL  129 (338)
Q Consensus        72 n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~  129 (338)
                      ..++|.+++++||+|||++|++++.+||++|..||..|+|||+.|||+||+.++++..
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            3568899999999999999999999999999999999999999999999999988753

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.43  E-value=1.5e-14  Score=110.94  Aligned_cols=57  Identities=18%  Similarity=0.277  Sum_probs=53.2

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCC
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKR   80 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkk   80 (338)
                      .|.+++++||+|||++|+++|..||. +|..||+.|+ +|+..||+.||.++|.+.++.
T Consensus         4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            58899999999999999999999997 6999999998 999999999999999876665

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.41  E-value=5.5e-14  Score=108.82  Aligned_cols=64  Identities=20%  Similarity=0.363  Sum_probs=48.1

Q ss_pred             cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCC
Q 019619           13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKR   80 (338)
Q Consensus        13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkk   80 (338)
                      ++.++.+...|++++|+||+|||++|+++|.+||.. |+.||+.|  +|++.||+.||.. |......
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            566889999999999999999999999999999976 99999999  6999999999974 5444443

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.37  E-value=4.9e-13  Score=112.58  Aligned_cols=64  Identities=23%  Similarity=0.505  Sum_probs=57.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCCC
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTP  138 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~~  138 (338)
                      .+..++++||+|||++|++++.+||.+|..||+.|+|||+.||+.||..+|.+.+++++|+..+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE   69 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE   69 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHH
Confidence            3568899999999999999999999999999999999999999999999998888887776544

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.37  E-value=4.8e-13  Score=108.71  Aligned_cols=61  Identities=28%  Similarity=0.561  Sum_probs=54.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCC
Q 019619           77 DLKRGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPT  137 (338)
Q Consensus        77 ~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~  137 (338)
                      ++++++||+|||++|+++|.+||. +|..||..|+|||+.||+.||..+|.+.++.++|+..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~e   62 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE   62 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHH
Confidence            368999999999999999999996 7999999999999999999999999877666666543

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.37  E-value=5.8e-13  Score=103.04  Aligned_cols=52  Identities=10%  Similarity=0.238  Sum_probs=47.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           76 PDLKRGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        76 p~lkkg~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      +...+++||.|||++|++++.+||    .+|.+||++|||||+.|||+||+.+++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456788999999999999999999    7899999999999999999999988753

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.36  E-value=1.7e-13  Score=112.92  Aligned_cols=80  Identities=21%  Similarity=0.316  Sum_probs=68.1

Q ss_pred             ccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC---Ccccccccceeeeeec-----cCCCCCCCCCHHHHHH-
Q 019619           20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG---LQRCGKSCRLRWINYL-----RPDLKRGAFSPQEEEL-   90 (338)
Q Consensus        20 ~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~---~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EED~l-   90 (338)
                      ..+...++++||+|||++|+++|.+||.++|+.|++.+.   .+||..+|++||.+++     +|.++++.=+++|-.. 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            446788999999999999999999999989999998652   3899999999999998     6999999888887765 


Q ss_pred             HHHHHHHhC
Q 019619           91 IIHLHSILG   99 (338)
Q Consensus        91 Llelv~~~G   99 (338)
                      +++++..+|
T Consensus        86 v~~~~~~~~   94 (105)
T 2aje_A           86 VLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            778877665

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.36  E-value=7e-14  Score=118.38  Aligned_cols=91  Identities=19%  Similarity=0.298  Sum_probs=68.0

Q ss_pred             cCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHH
Q 019619           13 VNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELII   92 (338)
Q Consensus        13 ~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLl   92 (338)
                      ...+|.+...|.+++|+||+|||++|+++|..||. .|..||+.|+ +|+..||+.||.++|++.+..++|+.+--    
T Consensus        40 cr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----  113 (131)
T 3zqc_A           40 CRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----  113 (131)
T ss_dssp             HHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----
T ss_pred             HHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----
Confidence            45678899999999999999999999999999995 5999999998 99999999999999999999999876531    


Q ss_pred             HHHHHhCCchHHHhccC
Q 019619           93 HLHSILGNRWSQIAARL  109 (338)
Q Consensus        93 elv~~~G~kWs~IA~~l  109 (338)
                      ........+|..|++.+
T Consensus       114 ~p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A          114 LPDRSKKRKAADVPKKL  130 (131)
T ss_dssp             CCCCC------------
T ss_pred             Cchhhhhhhhhhcchhc
Confidence            00122235677777654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.31  E-value=4.9e-13  Score=104.81  Aligned_cols=52  Identities=15%  Similarity=0.375  Sum_probs=48.2

Q ss_pred             ccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619           20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        20 ~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      .+.....+++||+|||++|+++|++|| .+|..||+.|+ +|+..||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            356677789999999999999999999 78999999998 99999999999998

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.31  E-value=7.7e-13  Score=104.72  Aligned_cols=69  Identities=20%  Similarity=0.389  Sum_probs=59.5

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCchhhhhh----cCCcccccccceeeeeec-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 019619           28 GLWSPEEDDKLIKYMLTNGQGCWSDIARN----AGLQRCGKSCRLRWINYL-----RPDLKRG-AFSPQEEELIIHLHSI   97 (338)
Q Consensus        28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~~----m~~~Rt~~QCr~Rw~n~L-----~p~lkkg-~WT~EED~lLlelv~~   97 (338)
                      ++||+|||++|+++|++||.++|+.|++.    ++ +||..||++||.+++     +|.++++ +..++...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            48999999999999999999899999985    76 999999999999988     6766665 5667777888888754

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.30  E-value=1.2e-12  Score=102.57  Aligned_cols=48  Identities=15%  Similarity=0.295  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHH
Q 019619           77 DLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNST  124 (338)
Q Consensus        77 ~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~l  124 (338)
                      ...+++||+|||++|++++.+||++|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999755

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.29  E-value=2.2e-12  Score=105.53  Aligned_cols=58  Identities=21%  Similarity=0.456  Sum_probs=52.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCC
Q 019619           80 RGAFSPQEEELIIHLHSILGN-RWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPT  137 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~-kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~  137 (338)
                      +++||+|||++|+++|.+||. +|..||..|+|||+.||+.||..+|.+.++.++|+..
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~e   59 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPE   59 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHH
Confidence            579999999999999999995 8999999999999999999999999887777776544

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.29  E-value=3.9e-12  Score=95.29  Aligned_cols=50  Identities=20%  Similarity=0.396  Sum_probs=46.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHh---ccCCCCCHHHHHHHHHHHhHH
Q 019619           78 LKRGAFSPQEEELIIHLHSILGNRWSQIA---ARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G~kWs~IA---~~lpgRT~~q~KnRW~~llrk  127 (338)
                      ..+.+||+|||+.|+++|++||.+|.+|+   ..|++||..+||+||+.|.|+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            35789999999999999999999999999   577999999999999999875

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.25  E-value=7.3e-12  Score=99.10  Aligned_cols=49  Identities=27%  Similarity=0.480  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chHHHhcc----CCCCCHHHHHHHHHHHhHHHH
Q 019619           81 GAFSPQEEELIIHLHSILGN-RWSQIAAR----LPGRTDNEIKNFWNSTLKKIL  129 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G~-kWs~IA~~----lpgRT~~q~KnRW~~llrk~~  129 (338)
                      .+||+|||++|+++|.+||. +|+.|++.    |++||+.+||+||++++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999996 99999995    899999999999999998653

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.87  E-value=9.4e-13  Score=105.16  Aligned_cols=55  Identities=29%  Similarity=0.485  Sum_probs=50.6

Q ss_pred             ccCCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccC
Q 019619           20 AKANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRP   76 (338)
Q Consensus        20 ~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p   76 (338)
                      ...+.+++|+||+|||++|+++|..||. +|..||..|+ +||..||+.||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            3468899999999999999999999997 6999999998 99999999999998864

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.22  E-value=1.5e-11  Score=101.24  Aligned_cols=54  Identities=24%  Similarity=0.402  Sum_probs=48.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhccC----CCCCHHHHHHHHHHHhHHH
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILGN-RWSQIAARL----PGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~l----pgRT~~q~KnRW~~llrk~  128 (338)
                      .+..++++||+|||++|+++|.+||. +|..|++.+    ++||+.+||+||+++++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34578899999999999999999996 999999965    8999999999999999763

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.21  E-value=1.2e-11  Score=104.18  Aligned_cols=55  Identities=27%  Similarity=0.463  Sum_probs=50.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhcc----CCCCCHHHHHHHHHHHhHHH
Q 019619           74 LRPDLKRGAFSPQEEELIIHLHSILGN-RWSQIAAR----LPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        74 L~p~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~----lpgRT~~q~KnRW~~llrk~  128 (338)
                      +.+..++++||+|||++|+++|.+||. +|..|++.    |++||+.+||+||+++++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            456788999999999999999999996 99999997    49999999999999999864

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.20  E-value=2.3e-12  Score=99.70  Aligned_cols=54  Identities=17%  Similarity=0.396  Sum_probs=48.7

Q ss_pred             cCCCCcccCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeeeeecc
Q 019619           21 KANKLRKGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        21 k~~~lkkg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      .++...+++||+|||++|+++|+.||.   .+|..||+.|| +|+..||+.||.+++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            457788999999999999999999993   46999999998 9999999999998764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.17  E-value=3.3e-11  Score=97.23  Aligned_cols=51  Identities=22%  Similarity=0.465  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619           79 KRGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKKIL  129 (338)
Q Consensus        79 kkg~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~llrk~~  129 (338)
                      .+++||.|||++|++++.+||    ++|.+||+.|||||+.+||+||+.+++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~   61 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK   61 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            467999999999999999996    789999999999999999999999987753

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.16  E-value=1.6e-11  Score=113.82  Aligned_cols=56  Identities=25%  Similarity=0.466  Sum_probs=49.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------hHHHhccCCCCCHHHHHHHHHHHhHHHHhc
Q 019619           76 PDLKRGAFSPQEEELIIHLHSILGNR------WSQIAARLPGRTDNEIKNFWNSTLKKILKN  131 (338)
Q Consensus        76 p~lkkg~WT~EED~lLlelv~~~G~k------Ws~IA~~lpgRT~~q~KnRW~~llrk~~k~  131 (338)
                      +.+++++||+|||++|+++|.+||++      |..||++|+|||++|||+||+.+|++.+..
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~   65 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY   65 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhccc
Confidence            35778999999999999999999975      999999999999999999999999998763

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.13  E-value=5.2e-11  Score=100.48  Aligned_cols=54  Identities=26%  Similarity=0.476  Sum_probs=48.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhcc----CCCCCHHHHHHHHHHHhHHH
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILGN-RWSQIAAR----LPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G~-kWs~IA~~----lpgRT~~q~KnRW~~llrk~  128 (338)
                      ....++++||+|||+.|+++|.+||. +|..|++.    |++||+.+||+||+++++..
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34567899999999999999999996 99999996    48999999999999999764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=81.27  Aligned_cols=47  Identities=13%  Similarity=0.125  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHh
Q 019619           79 KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTL  125 (338)
Q Consensus        79 kkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~ll  125 (338)
                      ..++||+||++++++++.+||.+|..||..|++||..+|+.+|....
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999997544

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.94  E-value=6e-10  Score=89.86  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=60.3

Q ss_pred             ccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhccC-----CCCCHHHHHHHHHHHhHHHHhcC
Q 019619           63 GKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARL-----PGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        63 ~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~~l-----pgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      +.=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+.++     ++||..+||+||..+.++.++..
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            35578899999976    79999999999999999999999999999     58999999999999999988876

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.91  E-value=1.6e-10  Score=93.16  Aligned_cols=48  Identities=15%  Similarity=0.337  Sum_probs=43.1

Q ss_pred             cccCCCHHHHHHHHHHHHHcC---CCCchhhhhhcCCcccccccceeeeeec
Q 019619           26 RKGLWSPEEDDKLIKYMLTNG---QGCWSDIARNAGLQRCGKSCRLRWINYL   74 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G---~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L   74 (338)
                      .+++||+|||++|+++++.|+   ...|..||+.|| +||..||+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            467999999999999999997   356999999998 999999999998764

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.82  E-value=4.8e-09  Score=80.75  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           77 DLKRGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        77 ~lkkg~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      ..+.+.||.||+++|.+++.+|+    .+|.+||.++ |||..+|++||+.|++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34577999999999999999997    6899999998 99999999999988654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.74  E-value=8e-09  Score=95.12  Aligned_cols=50  Identities=14%  Similarity=0.286  Sum_probs=46.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           78 LKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      ...++||+||++++++++.+||++|..||+.+++||..|||++|....++
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            34579999999999999999999999999999999999999999987766

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=7.4e-09  Score=76.90  Aligned_cols=48  Identities=13%  Similarity=0.225  Sum_probs=43.0

Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619           24 KLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        24 ~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      ....++||+||++++.+++..|| .+|..||+.|+ +|+..||+.+|...
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            34668999999999999999999 57999999998 99999999988643

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.63  E-value=4.1e-08  Score=75.87  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619           80 RGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      ...||.+|+++|.+++..|+    .+|.+||..++|||..+|+.||..+++..
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~   60 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            46899999999999999998    46999999999999999999999886543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.58  E-value=8.8e-09  Score=77.12  Aligned_cols=49  Identities=16%  Similarity=0.194  Sum_probs=43.7

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCchhhh---hhcCCcccccccceeeeeecc
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIA---RNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA---~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      ..+.+||+|||+.|++.|++||. .|..|+   .++. +|+...+++||.+...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            46789999999999999999997 799999   4665 9999999999998664

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.57  E-value=3e-08  Score=100.18  Aligned_cols=46  Identities=15%  Similarity=0.324  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619           81 GAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llr  126 (338)
                      ..||+||..++++++.+||.+|..||+.++.||..|||++|....+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999975443

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.48  E-value=2.2e-08  Score=77.05  Aligned_cols=51  Identities=18%  Similarity=0.248  Sum_probs=43.8

Q ss_pred             CCcccCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeeeeeccC
Q 019619           24 KLRKGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWINYLRP   76 (338)
Q Consensus        24 ~lkkg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p   76 (338)
                      ..+++.||+|||++|.+++++|+.   ..|..||+.+  +|+..||+.||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence            455789999999999999999983   5699999998  49999999999876543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.32  E-value=7.9e-08  Score=71.20  Aligned_cols=48  Identities=21%  Similarity=0.456  Sum_probs=42.8

Q ss_pred             ccCCCHHHHHHHHHHHHHc--------CCCCchhhhh-hcCCcccccccceeeeeecc
Q 019619           27 KGLWSPEEDDKLIKYMLTN--------GQGCWSDIAR-NAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~--------G~~~W~~IA~-~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      +.+||+|||+.|+++|+++        |..-|..+|+ .++ .++..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5789999999999999999        4445999999 787 9999999999998774

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.31  E-value=1.2e-07  Score=73.27  Aligned_cols=48  Identities=25%  Similarity=0.520  Sum_probs=43.0

Q ss_pred             ccCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeeeeecc
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      ...||.+|+++|.++++.|+.   ++|..||+.|| +|+..+|+.||..++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            367999999999999999984   56999999998 9999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.29  E-value=7.9e-07  Score=65.79  Aligned_cols=47  Identities=21%  Similarity=0.361  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCc-hHHHhc-cCCCCCHHHHHHHHHHHhH
Q 019619           80 RGAFSPQEEELIIHLHSIL--------GNR-WSQIAA-RLPGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~--------G~k-Ws~IA~-~lpgRT~~q~KnRW~~llr  126 (338)
                      +.+||+|||.+|++.|.++        |+. |.++++ .++++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        543 999999 7999999999999987663

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=3e-06  Score=63.23  Aligned_cols=47  Identities=15%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCchHHHhc-cCCCCCHHHHHHHHH
Q 019619           76 PDLKRGAFSPQEEELIIHLHSILGNRWSQIAA-RLPGRTDNEIKNFWN  122 (338)
Q Consensus        76 p~lkkg~WT~EED~lLlelv~~~G~kWs~IA~-~lpgRT~~q~KnRW~  122 (338)
                      |.++...||+||.++..+++.+||.+|..|++ .+++||..+|...|.
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   52 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY   52 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence            66778899999999999999999999999999 589999999999885

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.18  E-value=3.9e-07  Score=83.94  Aligned_cols=51  Identities=18%  Similarity=0.275  Sum_probs=45.4

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeecc
Q 019619           23 NKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        23 ~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      ......+||+||++++++++.+|| .+|..||+.|+ +|+..||+.+|+++..
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            334568999999999999999999 56999999998 9999999999987653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.17  E-value=3.5e-06  Score=67.37  Aligned_cols=51  Identities=14%  Similarity=0.278  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chHHHhccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619           82 AFSPQEEELIIHLHSILGN---RWSQIAARLPGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        82 ~WT~EED~lLlelv~~~G~---kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      -||.|||+.||..+++-|.   .|..||+.|.+|+.+||++||+.|++-.-+..
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~   88 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC   88 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence            5999999999999999985   89999999999999999999999998765544

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.05  E-value=6.3e-06  Score=79.08  Aligned_cols=102  Identities=18%  Similarity=0.268  Sum_probs=80.5

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccce-------eee-----------------------------
Q 019619           28 GLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRL-------RWI-----------------------------   71 (338)
Q Consensus        28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~-------Rw~-----------------------------   71 (338)
                      +.||..+...++.++.+||..+|..||..|+ +++...++.       ||.                             
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999997 888866542       220                             


Q ss_pred             --------------eeccCCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhc------------cCCCCCHHHHHHHH
Q 019619           72 --------------NYLRPDLKRGAFSPQEEELIIHLHSILG----NRWSQIAA------------RLPGRTDNEIKNFW  121 (338)
Q Consensus        72 --------------n~L~p~lkkg~WT~EED~lLlelv~~~G----~kWs~IA~------------~lpgRT~~q~KnRW  121 (338)
                                    +...+..+...||++||..||-++.+||    +.|..|..            ++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                          0001223446899999999999999999    46999962            44789999999999


Q ss_pred             HHHhHHHHh
Q 019619          122 NSTLKKILK  130 (338)
Q Consensus       122 ~~llrk~~k  130 (338)
                      ..|++-..+
T Consensus       270 ~tLi~~iek  278 (304)
T 1ofc_X          270 NTLITLIER  278 (304)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999875544

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.01  E-value=1.3e-06  Score=67.36  Aligned_cols=43  Identities=23%  Similarity=0.388  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chHHHhccCCCCCHHHHHHHHH
Q 019619           80 RGAFSPQEEELIIHLHSILGN----RWSQIAARLPGRTDNEIKNFWN  122 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~----kWs~IA~~lpgRT~~q~KnRW~  122 (338)
                      ..+||.||+++|.+++.+|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999884

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.19  E-value=1.1e-06  Score=66.75  Aligned_cols=46  Identities=15%  Similarity=0.348  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619           82 AFSPQEEELIIHLHSILGN---RWSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        82 ~WT~EED~lLlelv~~~G~---kWs~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      -||.|||+.||..+++-|.   .|..||+.| +||++||++||..|++-.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf   64 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF   64 (70)
Confidence            5999999999999999996   799999999 999999999999988643

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.90  E-value=2.4e-05  Score=62.96  Aligned_cols=53  Identities=17%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhccCC-----CCCHHHHHHHHHHHhHHHHhcCC
Q 019619           81 GAFSPQEEELIIHLHSILGNRWSQIAARLP-----GRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G~kWs~IA~~lp-----gRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      ..||.||...|++|+.+|+-+|..|+.++.     .||-.++|.||..+.++.++...
T Consensus        31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            589999999999999999999999999873     79999999999999999888763

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.85  E-value=1.8e-06  Score=66.56  Aligned_cols=44  Identities=11%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             ccCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeee
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWI   71 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~   71 (338)
                      ...||.+|+++|.++++.|+.   ..|.+||+.|| +|+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            568999999999999999974   37999999998 999999999885

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.72  E-value=5.7e-05  Score=57.44  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhc-cCCCCCHHHHHHHHH
Q 019619           80 RGAFSPQEEELIIHLHSILGNRWSQIAA-RLPGRTDNEIKNFWN  122 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~kWs~IA~-~lpgRT~~q~KnRW~  122 (338)
                      ...||+||.++..+++.+||.+|..|++ .+++||..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4689999999999999999999999999 589999999999886

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.70  E-value=4.8e-05  Score=61.11  Aligned_cols=44  Identities=20%  Similarity=0.145  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHH
Q 019619           80 RGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNS  123 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~  123 (338)
                      ...||+||.+++.+++..||.+|..||..|++||..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999998853

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.64  E-value=1.9e-05  Score=58.88  Aligned_cols=48  Identities=10%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhh-hcCCcccccccceeee
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIAR-NAGLQRCGKSCRLRWI   71 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~-~m~~~Rt~~QCr~Rw~   71 (338)
                      .|.+....||+||-+++.+++.+||. +|..|++ .|+ +|+..||..-|.
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY   52 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYY   52 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHh
Confidence            57888899999999999999999995 6999998 588 999999987664

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.30  E-value=6.1e-05  Score=76.21  Aligned_cols=47  Identities=17%  Similarity=0.289  Sum_probs=42.4

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      ....+||.||-+++++++.+|| .+|..||+.|+ +|+..||+..|.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3568999999999999999999 57999999999 99999999987653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.28  E-value=0.00037  Score=54.33  Aligned_cols=53  Identities=19%  Similarity=0.400  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CchHHHhccC----CCCCHHHHHHHHHHHhHHHHhcC
Q 019619           80 RGAFSPQEEELIIHLHSILG----------NRWSQIAARL----PGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G----------~kWs~IA~~l----pgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      ...||.+|-.+||++..++.          ..|..||..|    -.||+.||+.+|.+|.+...+..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k   70 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK   70 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999997642          2599999986    37999999999999888765554

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.09  E-value=0.00021  Score=57.10  Aligned_cols=59  Identities=17%  Similarity=0.291  Sum_probs=48.3

Q ss_pred             CCCcccccCCCCcccCCCHHHHHHHHHHHHHcCC--CCchhhhhhcCCcccccccceeeeee
Q 019619           14 NGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQ--GCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        14 ~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~--~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      .-.+...+++.-+--.||.|||..|+..+++.|.  +-|..||+.++ +|++.|+++|++.+
T Consensus        20 ~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           20 CANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             eeccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            3344445566666679999999999999999985  45999999998 99999999998753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.01  E-value=0.0002  Score=57.47  Aligned_cols=43  Identities=16%  Similarity=0.331  Sum_probs=39.3

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeee
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWI   71 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~   71 (338)
                      ...||+||.+++.+++..|| ++|..||+.++ +|+..+|.+-|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence            57899999999999999999 56999999998 999999988664

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.96  E-value=0.00027  Score=53.70  Aligned_cols=44  Identities=16%  Similarity=0.095  Sum_probs=39.3

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCCchhhhh-hcCCcccccccceeee
Q 019619           26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIAR-NAGLQRCGKSCRLRWI   71 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~-~m~~~Rt~~QCr~Rw~   71 (338)
                      ....||+||-+++.+++..||. +|..|++ .|+ +|+..+|..-|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4568999999999999999995 6999999 588 999999988665

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.96  E-value=0.00028  Score=56.74  Aligned_cols=49  Identities=16%  Similarity=0.226  Sum_probs=41.7

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC----Ccccccccceeeeeec
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG----LQRCGKSCRLRWINYL   74 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~----~~Rt~~QCr~Rw~n~L   74 (338)
                      ++..+||.||++.|++++.+|+.. |..|+..+.    .+|+.-++++||....
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            344899999999999999999965 999999983    2799999999987643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.83  E-value=8.6e-05  Score=57.99  Aligned_cols=50  Identities=26%  Similarity=0.545  Sum_probs=40.2

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCC---------CCchhhhhhc---CCcccccccceeeeeec
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQ---------GCWSDIARNA---GLQRCGKSCRLRWINYL   74 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~---------~~W~~IA~~m---~~~Rt~~QCr~Rw~n~L   74 (338)
                      .+...||.+|-..|+++......         .-|..||..|   |..|++.||+.+|.++.
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999865321         1499999876   45799999999998754

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.80  E-value=0.0041  Score=55.45  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcC--CCCchhhhhh--cCCcccccccce-------eeee-------------------
Q 019619           23 NKLRKGLWSPEEDDKLIKYMLTNG--QGCWSDIARN--AGLQRCGKSCRL-------RWIN-------------------   72 (338)
Q Consensus        23 ~~lkkg~WT~EEDe~L~~lV~~~G--~~~W~~IA~~--m~~~Rt~~QCr~-------Rw~n-------------------   72 (338)
                      |+-....||..|-..|+.++.+||  .+.|..|++.  +. +|+...++.       ++..                   
T Consensus         3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~   81 (211)
T 4b4c_A            3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV   81 (211)
T ss_dssp             -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            344567899999999999999999  5679999864  33 444422211       0000                   


Q ss_pred             -------------------------ec--------------------cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHh
Q 019619           73 -------------------------YL--------------------RPDLKRGAFSPQEEELIIHLHSILG-NRWSQIA  106 (338)
Q Consensus        73 -------------------------~L--------------------~p~lkkg~WT~EED~lLlelv~~~G-~kWs~IA  106 (338)
                                               .|                    .+......||++||..||..+.+|| ++|.+|-
T Consensus        82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir  161 (211)
T 4b4c_A           82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK  161 (211)
T ss_dssp             -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence                                     00                    0011123599999999999999999 9999995


Q ss_pred             c--cC------------CCCCHHHHHHHHHHHhHHH
Q 019619          107 A--RL------------PGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus       107 ~--~l------------pgRT~~q~KnRW~~llrk~  128 (338)
                      .  .|            ..+++..+..|...||+-.
T Consensus       162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred             hChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence            4  21            1245678999987777643

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.69  E-value=0.0035  Score=61.60  Aligned_cols=105  Identities=19%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccce-------eee-----------------------------
Q 019619           28 GLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRL-------RWI-----------------------------   71 (338)
Q Consensus        28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~-------Rw~-----------------------------   71 (338)
                      +.||.-+=..++.++.+||..+-..||..|+.+++...++.       ||.                             
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999889999999853566644431       111                             


Q ss_pred             ------------ee---ccCC-CCCCCCCHHHHHHHHHHHHHhC----CchHHHhcc------------CCCCCHHHHHH
Q 019619           72 ------------NY---LRPD-LKRGAFSPQEEELIIHLHSILG----NRWSQIAAR------------LPGRTDNEIKN  119 (338)
Q Consensus        72 ------------n~---L~p~-lkkg~WT~EED~lLlelv~~~G----~kWs~IA~~------------lpgRT~~q~Kn  119 (338)
                                  .+   +.+. -+...||++||..||-++.+||    +.|..|-..            |..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                        00   0111 1345799999999999999999    569998332            36799999999


Q ss_pred             HHHHHhHHHHhcC
Q 019619          120 FWNSTLKKILKNN  132 (338)
Q Consensus       120 RW~~llrk~~k~~  132 (338)
                      |...|++-..+..
T Consensus       284 Rc~tLi~~IeKE~  296 (374)
T 2y9y_A          284 RGNTLLQCLEKEF  296 (374)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998765543

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.66  E-value=0.0003  Score=53.42  Aligned_cols=52  Identities=12%  Similarity=0.213  Sum_probs=43.6

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCC--CCchhhhhhcCCcccccccceeeeeecc
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQ--GCWSDIARNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~--~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      +.+-.--.||.|||..|+..+++.|.  .-|..||..+  +|++.|+..||...+.
T Consensus         9 ~~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A            9 KKGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            44444568999999999999999986  3599999888  5999999999987654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.08  E-value=0.062  Score=40.22  Aligned_cols=50  Identities=10%  Similarity=0.024  Sum_probs=41.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc---hHHHhccC--CCCCHHHHHHHHHHHhHH
Q 019619           78 LKRGAFSPQEEELIIHLHSILGNR---WSQIAARL--PGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G~k---Ws~IA~~l--pgRT~~q~KnRW~~llrk  127 (338)
                      ..+-.||+|..++.++++.++|..   +..|-+.|  +|.|..+|+.|.+.+-..
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~   59 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            345689999999999999999955   78998876  799999999987655433

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.83  E-value=0.27  Score=47.04  Aligned_cols=49  Identities=16%  Similarity=0.263  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619           80 RGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      -+.||..|...++.++.+|| .+|..||..++|+|..+|+.++.....+.
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            35799999999999999999 58999999999999999988777666554

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=91.36  E-value=0.088  Score=42.16  Aligned_cols=48  Identities=17%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC----Ccccccccceeeeee
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG----LQRCGKSCRLRWINY   73 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~----~~Rt~~QCr~Rw~n~   73 (338)
                      ++...||.||.+.|.+++.++.-. |-.|+....    ..|+.-+.++||...
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            445789999999999999999954 999998763    157777788887654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.39  E-value=0.42  Score=42.24  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=42.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CchHHHhc--cCCCCCHHHHHHHHHHHhHHH
Q 019619           78 LKRGAFSPQEEELIIHLHSILG---NRWSQIAA--RLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G---~kWs~IA~--~lpgRT~~q~KnRW~~llrk~  128 (338)
                      -....||+.|-..|+.++.+||   .+|..|+.  .|.+||..+|+..+..++..-
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            3456899999999999999999   68999986  478999999998777766553

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.22  E-value=0.22  Score=46.90  Aligned_cols=28  Identities=36%  Similarity=0.769  Sum_probs=25.9

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCchhhhh
Q 019619           28 GLWSPEEDDKLIKYMLTNGQGCWSDIAR   55 (338)
Q Consensus        28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~   55 (338)
                      ..|+.+||.+|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4599999999999999999999999964

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=88.30  E-value=0.19  Score=37.58  Aligned_cols=48  Identities=15%  Similarity=0.141  Sum_probs=36.0

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCC--CchhhhhhcCC-cccccccceee
Q 019619           23 NKLRKGLWSPEEDDKLIKYMLTNGQG--CWSDIARNAGL-QRCGKSCRLRW   70 (338)
Q Consensus        23 ~~lkkg~WT~EEDe~L~~lV~~~G~~--~W~~IA~~m~~-~Rt~~QCr~Rw   70 (338)
                      .+..+-.||+|..++++++|...|..  -++.|.+.|+. +.|..++..+.
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL   53 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL   53 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence            45677899999999999999999943  27889888762 45555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-16
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	6e-15
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	9e-12
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	9e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-06
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-06
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-13
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-12
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	7e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	4e-04

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (194), Expect = 1e-19
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
          L KG W+ EED +LIK +   G   WS IA++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 78  LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLK 126
           L +G ++ +E++ +I L    G  RWS IA  L GR   + +  W++ L 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.6 bits (186), Expect = 2e-18
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD 77
          K  W+ EED+KL K +  NG   W  IA      R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 80  RGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLK 126
           +  ++ +E+E +  L    G + W  IA  LP RTD + ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 71.2 bits (174), Expect = 2e-16
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 30  WSPEEDDKLIKYMLTNGQGCWSDIARNA---GLQRCGKSCRLRWINYLR-----PDLKRG 81
           +S  E + L++ +   G G W D+   A      R     + +W   +      P  +RG
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 82  AFSPQEEELIIHLHSILGNRWSQ 104
              PQ+    +         WSQ
Sbjct: 63  EPVPQDLLDRV---LAAHAYWSQ 82

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.9 bits (163), Expect = 6e-15
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 27 KGLWSPEEDDKLIKYMLTNGQG-----CWSDIARNAGLQRCGKSCRLRWINYLRPDLKRG 81
          K  ++ EED+ ++  +  N         + +I+        G S R R+  YL   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 82 AFSPQEEELIIHLH 95
              +  +L+    
Sbjct: 60 YEVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (141), Expect = 9e-12
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 80  RGAFSPQEEELIIHLHSILGNR------WSQIAARLPGRTDNEIKNFWNSTLKKILKNNP 133
           + +F+ +E+E I+ +      R      + +I+  +P  T N I++ +   L K L+   
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ-RCGKSCRLRWINYLR 75
          ++  W  EED  L   +   G+G WS I  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 79  KRGAFSPQEEELIIHLHSILGN-RWSQIA--ARLPGRTDNEIKNFWNSTLKKI 128
           KR A+  +E++ +       G   WS+I    +   RT   +K+ W  T+KK+
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWR-TMKKL 52

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 1e-14
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQ-RCGKSCRLRWINYLRPDL 78
          +K  W+ EE + +   +   G+G W+ I++N     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 6e-06
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 79  KRGAFSPQEEELIIHLHSILG-NRWSQIA--ARLPGRTDNEIKNFWNSTLKK 127
           K+  ++ +E E +       G   W+ I+       RT   IK+ W +  + 
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.7 bits (155), Expect = 4e-14
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 80  RGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK 126
           + +++ +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLR 75
          K  W+ EED  + +         W++IA+     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAH-KRLGNRWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 3e-13
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 83  FSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTPSPNN 142
           ++ +E+EL     +  G RW++I+  +  RT  ++K++     K  +K   +  TP+   
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 64

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (149), Expect = 4e-13
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 30 WSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEE 89
          W+ EE +   + +       W+ I++  G  R     +     Y +  +K G       +
Sbjct: 5  WTIEEKELFEQGLAKF-GRRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPNQ 62

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 1e-12
 Identities = 7/50 (14%), Positives = 23/50 (46%)

Query: 79  KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128
               ++ +E+ L +      G  +  I+  +  ++  ++KNF+ +  ++ 
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 53

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 30 WSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLR 75
          W+ EE    ++ +   G+  +  I+   G  +     +  ++NY R
Sbjct: 8  WTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 51

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 4e-12
 Identities = 11/50 (22%), Positives = 18/50 (36%)

Query: 79  KRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKI 128
               +S QE+E            +  IA+ L  +T  E   ++  T K  
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNE 65

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 3e-10
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 30 WSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY 73
          W+ +E+  L++ ++  G G W D+A      +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 3e-09
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 24 KLRKGLWSPEEDDKLIKYMLTNGQGC---WSDIARNAGLQRCGKSCRLRW 70
          +  +  W+  +   L   +    +G    W  IAR     +  + C  R+
Sbjct: 9  RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 75  RPDLKRGAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFW 121
           R       ++  +++L+            + W +IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 83  FSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTLKKI 128
           +S +E +      ++      +RW+ +A  + GRT  E+K  +   ++ I
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 53

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 43.8 bits (103), Expect = 7e-07
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 30 WSPEEDDKLIKYMLTNGQGC---WSDIARNAGLQRCGKSCRLRWINYLRPDLKR 80
          WS +E+    + +    +     W+++AR     R  +  +  +   L  D+K 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHY-EILVEDIKY 55

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 69  RWINYLRPDLKRGAFSPQEEELIIHLHSILGNR---WSQIAARLPGRTDNEIKNFWNSTL 125
                     K   ++ + + +I+ +    G +   +S I+ +L  +T  E+ + +   L
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE-L 80

Query: 126 KKILKNNPNAPTPS 139
            ++      +   S
Sbjct: 81  MQLFHTACESGPSS 94

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 10 ERLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNG--QGCWSDIARNAGLQRCGKSCR 67
          E  V  +N    +   +  LW+ E D  ++      G     +S I++  G  +      
Sbjct: 16 EATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVS 74

Query: 68 LRWINYLR 75
           R+   ++
Sbjct: 75 HRFRELMQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.54
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.48
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.47
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.45
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.44
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.44
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.41
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.4
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.37
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.33
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.33
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.32
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.3
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.28
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.25
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.18
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.13
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.13
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.1
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.84
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.82
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.8
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.23
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.18
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.71
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.54
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.5
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.11
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.73
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.63
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.6
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	89.54
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	88.49
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	82.24

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.6e-20  Score=146.70  Aligned_cols=71  Identities=21%  Similarity=0.243  Sum_probs=65.7

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCC-----CchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHh
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQG-----CWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSIL   98 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~-----~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~   98 (338)
                      |++||+|||++|+++|.+||..     +|..||+.|+ +|+++|||+||.++|+|.+++++||++||++|+..+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999854     4999999998 999999999999999999999999999999998776554

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.2e-18  Score=124.76  Aligned_cols=52  Identities=48%  Similarity=0.853  Sum_probs=49.9

Q ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC
Q 019619           25 LRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD   77 (338)
Q Consensus        25 lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~   77 (338)
                      ++||+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999998 999999999999999985

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=6.4e-17  Score=113.47  Aligned_cols=47  Identities=51%  Similarity=0.981  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhH
Q 019619           80 RGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llr  126 (338)
                      +++||+|||++|++++.+||++|..||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.1e-17  Score=118.59  Aligned_cols=50  Identities=38%  Similarity=0.690  Sum_probs=48.0

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCC
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPD   77 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~   77 (338)
                      |++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999998 999999999999999985

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=4.5e-16  Score=111.23  Aligned_cols=50  Identities=32%  Similarity=0.672  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           78 LKRGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      +.+|+||+|||++|++++.+|| ++|..||+.|++||+.||++||+.+|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4689999999999999999999 6899999999999999999999988754

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.54  E-value=4.2e-16  Score=121.27  Aligned_cols=74  Identities=24%  Similarity=0.413  Sum_probs=61.7

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCCchhhhhhc---CCcccccccceeeeeec-----cCCCCCCCCCHHHHHHHHHHHHHhC
Q 019619           28 GLWSPEEDDKLIKYMLTNGQGCWSDIARNA---GLQRCGKSCRLRWINYL-----RPDLKRGAFSPQEEELIIHLHSILG   99 (338)
Q Consensus        28 g~WT~EEDe~L~~lV~~~G~~~W~~IA~~m---~~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EED~lLlelv~~~G   99 (338)
                      .+||+|||++|+++|.+||.++|..||+.+   ..+|++.||++||.++|     .+..+++.|+++|   |+..+.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            389999999999999999998999999853   23899999999999998     4677889999877   555555566


Q ss_pred             CchHH
Q 019619          100 NRWSQ  104 (338)
Q Consensus       100 ~kWs~  104 (338)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.4e-15  Score=103.82  Aligned_cols=48  Identities=29%  Similarity=0.556  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           80 RGAFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      +++||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999998854

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-15  Score=107.94  Aligned_cols=53  Identities=25%  Similarity=0.456  Sum_probs=48.4

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCCchhhhhh--cCCcccccccceeeeeeccCCCC
Q 019619           26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARN--AGLQRCGKSCRLRWINYLRPDLK   79 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~--m~~~Rt~~QCr~Rw~n~L~p~lk   79 (338)
                      |+++||+|||++|+++|++||.++|..||+.  ++ +|++.||++||.+++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999899999987  54 89999999999999988753

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=2.3e-14  Score=112.28  Aligned_cols=61  Identities=21%  Similarity=0.342  Sum_probs=56.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------hHHHhccCCCCCHHHHHHHHHHHhHHHHhcCCCCCCCCC
Q 019619           80 RGAFSPQEEELIIHLHSILGNR------WSQIAARLPGRTDNEIKNFWNSTLKKILKNNPNAPTPSP  140 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~k------Ws~IA~~lpgRT~~q~KnRW~~llrk~~k~~~~s~~~s~  140 (338)
                      +++||+|||++|+++|.+||.+      |..||+.|||||+.|||+||+..|.+.++...++..+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~   67 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGK   67 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhH
Confidence            5799999999999999999965      999999999999999999999999999988888776654

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.2e-14  Score=101.82  Aligned_cols=51  Identities=22%  Similarity=0.375  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchHHHhcc--CCCCCHHHHHHHHHHHhHHHH
Q 019619           79 KRGAFSPQEEELIIHLHSILG-NRWSQIAAR--LPGRTDNEIKNFWNSTLKKIL  129 (338)
Q Consensus        79 kkg~WT~EED~lLlelv~~~G-~kWs~IA~~--lpgRT~~q~KnRW~~llrk~~  129 (338)
                      ++.+||+|||++|+++|.+|| ++|..|++.  |++||+.||++||+++++..+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            477999999999999999999 689999997  579999999999999987643

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.6e-14  Score=100.09  Aligned_cols=48  Identities=27%  Similarity=0.386  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchHHHhccC--CCCCHHHHHHHHHHHhH
Q 019619           79 KRGAFSPQEEELIIHLHSILG-NRWSQIAARL--PGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        79 kkg~WT~EED~lLlelv~~~G-~kWs~IA~~l--pgRT~~q~KnRW~~llr  126 (338)
                      ++++||+|||++|+++|.+|| ++|..|++.+  .+||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 5999999875  59999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.4e-14  Score=102.77  Aligned_cols=54  Identities=22%  Similarity=0.343  Sum_probs=49.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHHHHhcCC
Q 019619           80 RGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKILKNNP  133 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk~~k~~~  133 (338)
                      +..||+|||++|++++.+||.+|..||++|++||+.||++||..++++..+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~   55 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL   55 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            357999999999999999999999999999999999999999999988776654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-14  Score=101.53  Aligned_cols=45  Identities=22%  Similarity=0.657  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeec
Q 019619           29 LWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL   74 (338)
Q Consensus        29 ~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L   74 (338)
                      .||+|||++|+++|++||.++|..||+.|+ +||+.||+.||.+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHhC
Confidence            499999999999999999999999999998 999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.8e-14  Score=102.66  Aligned_cols=49  Identities=27%  Similarity=0.402  Sum_probs=44.1

Q ss_pred             cccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC-Ccccccccceeeeeec
Q 019619           26 RKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG-LQRCGKSCRLRWINYL   74 (338)
Q Consensus        26 kkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~-~~Rt~~QCr~Rw~n~L   74 (338)
                      ++++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999989999998743 3899999999998864

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=4e-14  Score=98.98  Aligned_cols=47  Identities=26%  Similarity=0.485  Sum_probs=43.7

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeecc
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      |++||+|||++|+++|.+||. +|+.||+.|+ +||..||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999996 5999999998 9999999999988763

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.6e-13  Score=96.16  Aligned_cols=50  Identities=12%  Similarity=0.261  Sum_probs=45.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC----chHHHhccCCCCCHHHHHHHHHHH
Q 019619           75 RPDLKRGAFSPQEEELIIHLHSILGN----RWSQIAARLPGRTDNEIKNFWNST  124 (338)
Q Consensus        75 ~p~lkkg~WT~EED~lLlelv~~~G~----kWs~IA~~lpgRT~~q~KnRW~~l  124 (338)
                      .+...+++||+|||++|++++.+||.    +|..||..|||||+.||+.||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45677889999999999999999995    599999999999999999999865

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.6e-13  Score=92.98  Aligned_cols=43  Identities=19%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHH
Q 019619           82 AFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNST  124 (338)
Q Consensus        82 ~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~l  124 (338)
                      .||+|||.+|++++.+|| ++|..||+.|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            499999999999999999 5799999999999999999999865

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2e-13  Score=99.58  Aligned_cols=54  Identities=19%  Similarity=0.442  Sum_probs=48.3

Q ss_pred             ccccCCCCcccCCCHHHHHHHHHHHHHcCCC---CchhhhhhcCCcccccccceeeee
Q 019619           18 INAKANKLRKGLWSPEEDDKLIKYMLTNGQG---CWSDIARNAGLQRCGKSCRLRWIN   72 (338)
Q Consensus        18 ~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~---~W~~IA~~m~~~Rt~~QCr~Rw~n   72 (338)
                      +....+...+++||+|||++|+++|..||.+   +|..||+.|| +|++.||+.||..
T Consensus         3 ~~~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           3 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             CccccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            3455788888999999999999999999975   4999999998 9999999999963

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.9e-12  Score=101.56  Aligned_cols=76  Identities=11%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             hcCCcccccccceeeeeeccCCCCCCCCCHHHHHHHHHHHHHhCCc---hHHHhccCCCCCHHHHHHHHHHHhHHHHhcC
Q 019619           56 NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNR---WSQIAARLPGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        56 ~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~lLlelv~~~G~k---Ws~IA~~lpgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      .++ ..+..+++.++.+..+.......||.|||++||+.++++|.+   |..||+.|+||+++|||+||+.|++..-+.-
T Consensus        10 ~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~~~   88 (95)
T d1ug2a_          10 ALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC   88 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred             cCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            344 677788888888888887888899999999999999999977   9999999999999999999999998765543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.28  E-value=2.7e-12  Score=94.35  Aligned_cols=49  Identities=22%  Similarity=0.481  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----chHHHhccCCCCCHHHHHHHHHHHhHHHH
Q 019619           81 GAFSPQEEELIIHLHSILGN----RWSQIAARLPGRTDNEIKNFWNSTLKKIL  129 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G~----kWs~IA~~lpgRT~~q~KnRW~~llrk~~  129 (338)
                      .+||+|||++|++++.+||.    +|.+||..|+|||+.||++||+.|++...
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik   54 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK   54 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence            48999999999999999995    59999999999999999999988776543

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.2e-13  Score=100.53  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=51.7

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeeccCCCCCCCCCHH
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ   86 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~E   86 (338)
                      ..+||+|||++|+++|..|| .+|..||+.|+ +||+.||+.||.+++.+..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            35799999999999999999 57999999998 999999999999999887777766543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.18  E-value=1.7e-11  Score=94.86  Aligned_cols=51  Identities=25%  Similarity=0.446  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHhcc----CCCCCHHHHHHHHHHHhHHHHhcC
Q 019619           82 AFSPQEEELIIHLHSILG-NRWSQIAAR----LPGRTDNEIKNFWNSTLKKILKNN  132 (338)
Q Consensus        82 ~WT~EED~lLlelv~~~G-~kWs~IA~~----lpgRT~~q~KnRW~~llrk~~k~~  132 (338)
                      +||.|||++|+++|.+|| ++|..|++.    +++||+.|||+||+++++......
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~   57 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP   57 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCc
Confidence            899999999999999999 589999984    689999999999999998765443

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.9e-11  Score=90.12  Aligned_cols=48  Identities=15%  Similarity=0.331  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           80 RGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      ...||+||+.+|++++.+||.+|..||..|+|||..||++||..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999877654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.13  E-value=4e-12  Score=93.44  Aligned_cols=44  Identities=16%  Similarity=0.389  Sum_probs=40.7

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCC---chhhhhhcCCcccccccceeeee
Q 019619           28 GLWSPEEDDKLIKYMLTNGQGC---WSDIARNAGLQRCGKSCRLRWIN   72 (338)
Q Consensus        28 g~WT~EEDe~L~~lV~~~G~~~---W~~IA~~m~~~Rt~~QCr~Rw~n   72 (338)
                      .+||+|||++|+++|..||.+.   |..||..|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5899999999999999999764   999999998 9999999999953

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.2e-11  Score=90.61  Aligned_cols=48  Identities=21%  Similarity=0.113  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHhccCCCCCHHHHHHHHHHHh
Q 019619           78 LKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTL  125 (338)
Q Consensus        78 lkkg~WT~EED~lLlelv~~~G~kWs~IA~~lpgRT~~q~KnRW~~ll  125 (338)
                      ....+||+||+++|++++.+||.+|..||..|++||..||++||....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            445689999999999999999999999999999999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.8e-10  Score=83.66  Aligned_cols=46  Identities=17%  Similarity=0.311  Sum_probs=42.5

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeeec
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL   74 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L   74 (338)
                      ..+||++||++|.+++..|| .+|..||+.|+ +|+..||+.+|.++.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            46799999999999999999 55999999998 999999999998765

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.1e-10  Score=85.15  Aligned_cols=50  Identities=14%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHcCCCCchhhhhhcCCcccccccceeeeee
Q 019619           22 ANKLRKGLWSPEEDDKLIKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        22 ~~~lkkg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      +......+||+|||++|+++|..||. +|..||+.|+ +|+..||+.+|...
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLT   61 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            44456678999999999999999995 6999999998 99999999999754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=6.8e-10  Score=87.70  Aligned_cols=62  Identities=18%  Similarity=0.274  Sum_probs=53.6

Q ss_pred             cccCCCcccccCCCCcccCCCHHHHHHHHHHHHHcCCCC--chhhhhhcCCcccccccceeeeee
Q 019619           11 RLVNGSNINAKANKLRKGLWSPEEDDKLIKYMLTNGQGC--WSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        11 ~~~~~~~~n~k~~~lkkg~WT~EEDe~L~~lV~~~G~~~--W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      ..+..++.+.++...+...||.|||+.|++.++++|...  |..||+.|+ +|++.||+.||..+
T Consensus        17 ~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          17 ATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             cccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            345566777778888899999999999999999999543  999999998 99999999999753

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=9.2e-07  Score=63.16  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhcc-CCCCCHHHHHHHHHH
Q 019619           81 GAFSPQEEELIIHLHSILGNRWSQIAAR-LPGRTDNEIKNFWNS  123 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G~kWs~IA~~-lpgRT~~q~KnRW~~  123 (338)
                      ..||+||..++.+++.+||.+|..|++. +|+||..+|.++|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999999999985 699999999999863

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.2e-07  Score=64.12  Aligned_cols=44  Identities=16%  Similarity=0.292  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CchHHHhccCCCCCHHHHHHHHHHHh
Q 019619           81 GAFSPQEEELIIHLHSILG----NRWSQIAARLPGRTDNEIKNFWNSTL  125 (338)
Q Consensus        81 g~WT~EED~lLlelv~~~G----~kWs~IA~~lpgRT~~q~KnRW~~ll  125 (338)
                      ..||+||+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999996    6799999999 999999999997655

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.9e-06  Score=60.44  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=38.9

Q ss_pred             cCCCHHHHHHHHHHHHHcCC---CCchhhhhhcCCcccccccceeeeee
Q 019619           28 GLWSPEEDDKLIKYMLTNGQ---GCWSDIARNAGLQRCGKSCRLRWINY   73 (338)
Q Consensus        28 g~WT~EEDe~L~~lV~~~G~---~~W~~IA~~m~~~Rt~~QCr~Rw~n~   73 (338)
                      +.||+||+.+|.+++.+|..   ..|..||+.||  |+..+|..||..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            57999999999999999974   35999999995  9999999998654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=1.3e-05  Score=56.94  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCchhhhhh-cCCcccccccceeeee
Q 019619           29 LWSPEEDDKLIKYMLTNGQGCWSDIARN-AGLQRCGKSCRLRWIN   72 (338)
Q Consensus        29 ~WT~EEDe~L~~lV~~~G~~~W~~IA~~-m~~~Rt~~QCr~Rw~n   72 (338)
                      .||+||-+++.+++..||. +|..|++. +| +|+..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            6999999999999999994 69999985 56 9999999987754

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=0.00011  Score=49.62  Aligned_cols=46  Identities=22%  Similarity=0.480  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhccC---CCCCHHHHHHHHHHHh
Q 019619           80 RGAFSPQEEELIIHLHSILGNRWSQIAARL---PGRTDNEIKNFWNSTL  125 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G~kWs~IA~~l---pgRT~~q~KnRW~~ll  125 (338)
                      +..||+||..-|...++++|+.|..|--.+   +||+..++..+|..++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            347999999999999999999999996544   9999999999998764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.11  E-value=0.00051  Score=49.78  Aligned_cols=49  Identities=10%  Similarity=0.055  Sum_probs=40.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCch---HHHhcc--CCCCCHHHHHHHHHHHhHH
Q 019619           79 KRGAFSPQEEELIIHLHSILGNRW---SQIAAR--LPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        79 kkg~WT~EED~lLlelv~~~G~kW---s~IA~~--lpgRT~~q~KnRW~~llrk  127 (338)
                      .+-.||+||.+++++++..||..|   ..|...  ++++|..+|+.|.+.+.-+
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999887   467665  4999999999987766443

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00051  Score=49.04  Aligned_cols=47  Identities=19%  Similarity=0.318  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hHHHhc-cCCCCCHHHHHHHHHHHhH
Q 019619           80 RGAFSPQEEELIIHLHSILG--------NR-WSQIAA-RLPGRTDNEIKNFWNSTLK  126 (338)
Q Consensus        80 kg~WT~EED~lLlelv~~~G--------~k-Ws~IA~-~lpgRT~~q~KnRW~~llr  126 (338)
                      +.+||.|||+.|++.|.++.        +. |..+++ .++.+|-.+.|+||...||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999998873        22 999995 6799999999999987664

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00063  Score=48.52  Aligned_cols=48  Identities=19%  Similarity=0.418  Sum_probs=39.1

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCC--------Cchhhhh-hcCCcccccccceeeeeecc
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQG--------CWSDIAR-NAGLQRCGKSCRLRWINYLR   75 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~--------~W~~IA~-~m~~~Rt~~QCr~Rw~n~L~   75 (338)
                      +-+||.|||+.|+++|+.+...        =|..+++ .++ .++..+-|+||...|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5689999999999999997422        2999985 565 8888889999987764

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.012  Score=42.99  Aligned_cols=50  Identities=16%  Similarity=0.253  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc----hHHHhccCCCCCHHHHHHHHHHHhHHH
Q 019619           79 KRGAFSPQEEELIIHLHSILGNR----WSQIAARLPGRTDNEIKNFWNSTLKKI  128 (338)
Q Consensus        79 kkg~WT~EED~lLlelv~~~G~k----Ws~IA~~lpgRT~~q~KnRW~~llrk~  128 (338)
                      ..+.|+++|-.+|-.++..+...    |..+|..+..||+..|..+|..-++.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            34589999999999999998743    999999999999999999998765443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.63  E-value=0.0021  Score=46.47  Aligned_cols=51  Identities=14%  Similarity=0.116  Sum_probs=37.5

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHcCCCCc--hhhhhhcC-Ccccccccceeeeee
Q 019619           23 NKLRKGLWSPEEDDKLIKYMLTNGQGCW--SDIARNAG-LQRCGKSCRLRWINY   73 (338)
Q Consensus        23 ~~lkkg~WT~EEDe~L~~lV~~~G~~~W--~~IA~~m~-~~Rt~~QCr~Rw~n~   73 (338)
                      ++..+-.||+||.++++++|..+|.+.|  ..|.+.|+ .++|..||+-+.+.|
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3445678999999999999999996644  46777653 267888887655443

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0019  Score=47.34  Aligned_cols=49  Identities=24%  Similarity=0.487  Sum_probs=42.1

Q ss_pred             ccCCCHHHHHHHHHHHHHcC---CCCchhhhhhcCCcccccccceeeeeeccC
Q 019619           27 KGLWSPEEDDKLIKYMLTNG---QGCWSDIARNAGLQRCGKSCRLRWINYLRP   76 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G---~~~W~~IA~~m~~~Rt~~QCr~Rw~n~L~p   76 (338)
                      -+.|+++|-++|-.++....   .+-|..||..+| +|++..|..+|..-+..
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            46999999999999998754   567999999999 99999999988766543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.54  E-value=0.27  Score=39.44  Aligned_cols=54  Identities=19%  Similarity=0.361  Sum_probs=43.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-Cc---hHHHhc------------cCCCCCHHHHHHHHHHHhHHHHh
Q 019619           77 DLKRGAFSPQEEELIIHLHSILG-NR---WSQIAA------------RLPGRTDNEIKNFWNSTLKKILK  130 (338)
Q Consensus        77 ~lkkg~WT~EED~lLlelv~~~G-~k---Ws~IA~------------~lpgRT~~q~KnRW~~llrk~~k  130 (338)
                      ..++..+|+|||..|+-++.+|| .+   |..|-.            .|..||+..|..|...|++-..+
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence            44555799999999999999999 44   888732            22679999999999999886654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.49  E-value=0.68  Score=31.48  Aligned_cols=46  Identities=17%  Similarity=0.319  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHhccCCCCCHHHHHHHHHHHhHH
Q 019619           82 AFSPQEEELIIHLHSILG-NRWSQIAARLPGRTDNEIKNFWNSTLKK  127 (338)
Q Consensus        82 ~WT~EED~lLlelv~~~G-~kWs~IA~~lpgRT~~q~KnRW~~llrk  127 (338)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+...+..-++
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~r   47 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER   47 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            499999999999999999 6899999999999999998765544433

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.24  E-value=0.21  Score=33.21  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=33.6

Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCCchhhhhhcC--Ccccccccceeee
Q 019619           27 KGLWSPEEDDKLIKYMLTNGQGCWSDIARNAG--LQRCGKSCRLRWI   71 (338)
Q Consensus        27 kg~WT~EEDe~L~~lV~~~G~~~W~~IA~~m~--~~Rt~~QCr~Rw~   71 (338)
                      +..||.||-.-|...|.++|.. |..|--..|  +||+......+|+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~-WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNH-WNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSC-HHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcch-hhhhhhccCCCCCchhhHHHHHHH
Confidence            3569999999999999999955 999986554  3676655555443