Citrus Sinensis ID: 019647

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MAPPELVQTAVKPAGLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDESLDYKKPSADGNAGSVNLQPFIDALSDAAAVQFVTAPSAA
ccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEccccccccccccccccccccEEEEEcccccEEcEEEEEccccHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHccccccccHHHHHHHHHccccEEccccHHHHHHccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccccccccccccccc
cccccccHccccHHHcccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEEEcccHHHHHHHHcHHccEEEEEEEEEEEEEccEEEEEEHHHHHHHHHHHHHcccccEEEcHHHccccccccccccEEEEEEccccccccccHHcccccccEEcccEEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccHHccHcccEEEEEEcccccccEEccccccccHHHHHHHHHHHHHHHHHccHHHHHHcccccHcccccHHHHHHHHcccccccccccccc
mappelvqtavkpaglgakpaslpgraYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVavlpdvpeeHRNILEsqgcivreiepvyppdnqtqYAMAYYVINYSKLRIWEFVEYSKMiyldgdiqVFENidhlfdlpdgyfyAVMDCFcektwsktpqykigycqqcpdrvrwpaemgeppalyfnagmfvfepsistYHDLLetvkvtppttfaeQDFLNMYFKHIYKPIPLVYNLVLAMLWrhpenveldkVKVVHYCAagskpwrftgeeenmQREDVKMLVKKWWDIYndesldykkpsadgnagsvnlqPFIDALSDAAAVQFVTAPSAA
MAPPELVQTavkpaglgakpaslPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAvlpdvpeehRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAAgskpwrftgeeenmqrEDVKMLVKKWWDIYNDESLDYKKPSADGNAGSVNLQPFIDALSDAAAVQFVTAPSAA
MAPPELVQTAVKPAGLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDESLDYKKPSADGNAGSVNLQPFIDALSDAAAVQFVTAPSAA
**********************LPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEE*NMQREDVKMLVKKWWDIYNDESLDY***********VNLQPFIDALSDAAAVQFV******
**************************AYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYND**********************************VTAPS**
MAPPELVQTAVKPAGLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDESLDYKKPSADGNAGSVNLQPFIDALSDAAAVQFVTAPSAA
********T*V*********ASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDESLDYKKPSADGNAGSVNLQPFIDALSDAAAVQ********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPPELVQTAVKPAGLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDESLDYKKPSADGNAGSVNLQPFIDALSDAAAVQFVTAPSAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
O22893344 Galactinol synthase 1 OS= yes no 0.991 0.970 0.792 1e-159
C7G304338 Galactinol synthase 2 OS= N/A no 0.988 0.985 0.776 1e-155
Q9FXB2335 Galactinol synthase 2 OS= no no 0.925 0.931 0.805 1e-151
Q9XGN4333 Galactinol synthase 1 OS= N/A no 0.979 0.990 0.724 1e-147
O80518334 Galactinol synthase 3 OS= no no 0.925 0.934 0.758 1e-142
O22693334 Galactinol synthase 4 OS= no no 0.985 0.994 0.716 1e-141
Q8H1S1336 Galactinol synthase 6 OS= no no 0.913 0.916 0.708 1e-131
Q9XGN3292 Galactinol synthase 2 (Fr N/A no 0.857 0.989 0.751 1e-130
Q4PSY4332 Galactinol synthase 7 OS= no no 0.925 0.939 0.699 1e-128
Q9FFA1333 Galactinol synthase 5 OS= no no 0.913 0.924 0.696 1e-127
>sp|O22893|GOLS1_ARATH Galactinol synthase 1 OS=Arabidopsis thaliana GN=GOLS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  562 bits (1448), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/342 (79%), Positives = 298/342 (87%), Gaps = 8/342 (2%)

Query: 4   PELVQTAVKPAGLGAKPASLPG-----RAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPL 58
           P L QTA   + +     SLP      RAYVTFLAGNGDYVKGVVGLAKGLRKVK+AYPL
Sbjct: 3   PGLTQTADAMSTVTITKPSLPSVQDSDRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPL 62

Query: 59  VVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSK 118
           VVA+LPDVPEEHR IL  QGCIVREIEPVYPP+NQTQ+AMAYYVINYSKLRIW+FVEYSK
Sbjct: 63  VVAMLPDVPEEHRRILVDQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWKFVEYSK 122

Query: 119 MIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWP-A 177
           MIYLDGDIQV+ENIDHLFDLPDGY YAVMDCFCEKTWS TPQYKI YCQQCPD+V+WP A
Sbjct: 123 MIYLDGDIQVYENIDHLFDLPDGYLYAVMDCFCEKTWSHTPQYKIRYCQQCPDKVQWPKA 182

Query: 178 EMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVY 237
           E+GEPPALYFNAGMF++EP++ TY DLL T+K+TPPT FAEQDFLNMYFK IYKPIPLVY
Sbjct: 183 ELGEPPALYFNAGMFLYEPNLETYEDLLRTLKITPPTPFAEQDFLNMYFKKIYKPIPLVY 242

Query: 238 NLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDE 297
           NLVLAMLWRHPENVEL KVKVVHYCAAGSKPWR+TG+E NM+RED+KMLVKKWWDIY+DE
Sbjct: 243 NLVLAMLWRHPENVELGKVKVVHYCAAGSKPWRYTGKEANMEREDIKMLVKKWWDIYDDE 302

Query: 298 SLDYKKPSA--DGNAGSVNLQPFIDALSDAAAVQFVTAPSAA 337
           SLDYKKP    D     VNL+PFI AL++A  + +VTAPSAA
Sbjct: 303 SLDYKKPVTVVDTEVDLVNLKPFITALTEAGRLNYVTAPSAA 344
Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. Promotes plant stress tolerance such as heat, chilling, salinity and methylviologen (MV), a superoxide radical generating drug, by mediating raffinose accumulation, an osmoprotective substance.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2EC: 3
>sp|C7G304|GOLS2_SOLLC Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXB2|GOLS2_ARATH Galactinol synthase 2 OS=Arabidopsis thaliana GN=GOLS2 PE=1 SV=1 Back     alignment and function description
>sp|Q9XGN4|GOLS1_AJURE Galactinol synthase 1 OS=Ajuga reptans GN=GOLS1 PE=1 SV=1 Back     alignment and function description
>sp|O80518|GOLS3_ARATH Galactinol synthase 3 OS=Arabidopsis thaliana GN=GOLS3 PE=1 SV=1 Back     alignment and function description
>sp|O22693|GOLS4_ARATH Galactinol synthase 4 OS=Arabidopsis thaliana GN=GOLS4 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S1|GOLS6_ARATH Galactinol synthase 6 OS=Arabidopsis thaliana GN=GOLS6 PE=2 SV=1 Back     alignment and function description
>sp|Q9XGN3|GOLS2_AJURE Galactinol synthase 2 (Fragment) OS=Ajuga reptans GN=GOLS2 PE=1 SV=1 Back     alignment and function description
>sp|Q4PSY4|GOLS7_ARATH Galactinol synthase 7 OS=Arabidopsis thaliana GN=GOLS7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FFA1|GOLS5_ARATH Galactinol synthase 5 OS=Arabidopsis thaliana GN=GOLS5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
224130924336 predicted protein [Populus trichocarpa] 0.988 0.991 0.880 1e-173
255548353336 conserved hypothetical protein [Ricinus 0.988 0.991 0.862 1e-173
224064647337 predicted protein [Populus trichocarpa] 0.988 0.988 0.860 1e-169
167858185337 galactinol synthase 4 [Populus trichocar 0.988 0.988 0.857 1e-168
356505653339 PREDICTED: glycogenin-2-like [Glycine ma 0.979 0.973 0.818 1e-165
357511433339 Galactinol synthase [Medicago truncatula 0.991 0.985 0.804 1e-162
356572821335 PREDICTED: glycogenin-1-like [Glycine ma 0.976 0.982 0.813 1e-162
147856378342 hypothetical protein VITISV_039943 [Viti 0.988 0.973 0.797 1e-160
359480193342 PREDICTED: glycogenin-1 isoform 1 [Vitis 0.988 0.973 0.797 1e-160
295393494342 galactinol synthase [Brassica napus] 0.991 0.976 0.791 1e-158
>gi|224130924|ref|XP_002320958.1| predicted protein [Populus trichocarpa] gi|222861731|gb|EEE99273.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 295/335 (88%), Positives = 315/335 (94%), Gaps = 2/335 (0%)

Query: 4   PELVQTAVKPAGLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVL 63
           PELVQ A+KPAG   KPASLP RAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPL+VAVL
Sbjct: 3   PELVQAALKPAGF-TKPASLPSRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLIVAVL 61

Query: 64  PDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIYLD 123
           PDVPEEHR ILESQGCIVREIEPVYPP+NQTQ+AMAYYVINYSKLRIWEFVEYSKMIYLD
Sbjct: 62  PDVPEEHRRILESQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLD 121

Query: 124 GDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPP 183
           GDIQV++NIDHLFDLPDG+FYAVMDCFCEKTWS TPQYKIGYCQQCPD+V WPAEMG+PP
Sbjct: 122 GDIQVYDNIDHLFDLPDGHFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVNWPAEMGQPP 181

Query: 184 ALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAM 243
           +LYFNAGMFVFEPSISTYHDLL+T+KVTPPT FAEQDFLNMYFK IYKPIPLVYNLVLAM
Sbjct: 182 SLYFNAGMFVFEPSISTYHDLLKTLKVTPPTPFAEQDFLNMYFKDIYKPIPLVYNLVLAM 241

Query: 244 LWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDESLDYKK 303
           LWRHP+NVELDKVKVVHYCAAGSKPWR+TG+EENMQRED+KMLV+KWW IYNDESLDY K
Sbjct: 242 LWRHPDNVELDKVKVVHYCAAGSKPWRYTGKEENMQREDIKMLVEKWWGIYNDESLDYMK 301

Query: 304 PSADG-NAGSVNLQPFIDALSDAAAVQFVTAPSAA 337
             ADG +A  VNLQ FI ALS+A AVQ+VTAPSAA
Sbjct: 302 FVADGFDAEPVNLQSFIAALSEAGAVQYVTAPSAA 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548353|ref|XP_002515233.1| conserved hypothetical protein [Ricinus communis] gi|223545713|gb|EEF47217.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224064647|ref|XP_002301531.1| predicted protein [Populus trichocarpa] gi|222843257|gb|EEE80804.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|167858185|gb|ACA04033.1| galactinol synthase 4 [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|356505653|ref|XP_003521604.1| PREDICTED: glycogenin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|357511433|ref|XP_003626005.1| Galactinol synthase [Medicago truncatula] gi|355501020|gb|AES82223.1| Galactinol synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356572821|ref|XP_003554564.1| PREDICTED: glycogenin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|147856378|emb|CAN79630.1| hypothetical protein VITISV_039943 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480193|ref|XP_002279114.2| PREDICTED: glycogenin-1 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|295393494|gb|ADG03603.1| galactinol synthase [Brassica napus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2062860344 GolS1 "AT2G47180" [Arabidopsis 0.991 0.970 0.792 3e-149
TAIR|locus:2027549335 GolS2 "galactinol synthase 2" 0.925 0.931 0.805 5.3e-143
UNIPROTKB|Q9XGN4333 GOLS1 "Galactinol synthase 1" 0.979 0.990 0.724 2.8e-137
TAIR|locus:2012320334 GolS3 "galactinol synthase 3" 0.925 0.934 0.758 6e-135
TAIR|locus:2036576334 GolS4 "galactinol synthase 4" 0.982 0.991 0.723 2.3e-133
UNIPROTKB|Q9XGN3292 GOLS2 "Galactinol synthase 2" 0.854 0.986 0.755 1.7e-123
TAIR|locus:2136829336 GolS6 "galactinol synthase 6" 0.919 0.922 0.703 1.7e-123
TAIR|locus:2195668332 GolS7 "galactinol synthase 7" 0.922 0.936 0.707 1.3e-121
TAIR|locus:2172848333 GolS5 "AT5G23790" [Arabidopsis 0.821 0.831 0.755 6.7e-120
TAIR|locus:2145855328 GolS10 "galactinol synthase 10 0.946 0.972 0.675 5.4e-118
TAIR|locus:2062860 GolS1 "AT2G47180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1457 (517.9 bits), Expect = 3.0e-149, P = 3.0e-149
 Identities = 271/342 (79%), Positives = 298/342 (87%)

Query:     4 PELVQTAVKPAGLGAKPASLPG-----RAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPL 58
             P L QTA   + +     SLP      RAYVTFLAGNGDYVKGVVGLAKGLRKVK+AYPL
Sbjct:     3 PGLTQTADAMSTVTITKPSLPSVQDSDRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPL 62

Query:    59 VVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSK 118
             VVA+LPDVPEEHR IL  QGCIVREIEPVYPP+NQTQ+AMAYYVINYSKLRIW+FVEYSK
Sbjct:    63 VVAMLPDVPEEHRRILVDQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWKFVEYSK 122

Query:   119 MIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWP-A 177
             MIYLDGDIQV+ENIDHLFDLPDGY YAVMDCFCEKTWS TPQYKI YCQQCPD+V+WP A
Sbjct:   123 MIYLDGDIQVYENIDHLFDLPDGYLYAVMDCFCEKTWSHTPQYKIRYCQQCPDKVQWPKA 182

Query:   178 EMGEPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVY 237
             E+GEPPALYFNAGMF++EP++ TY DLL T+K+TPPT FAEQDFLNMYFK IYKPIPLVY
Sbjct:   183 ELGEPPALYFNAGMFLYEPNLETYEDLLRTLKITPPTPFAEQDFLNMYFKKIYKPIPLVY 242

Query:   238 NLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDE 297
             NLVLAMLWRHPENVEL KVKVVHYCAAGSKPWR+TG+E NM+RED+KMLVKKWWDIY+DE
Sbjct:   243 NLVLAMLWRHPENVELGKVKVVHYCAAGSKPWRYTGKEANMEREDIKMLVKKWWDIYDDE 302

Query:   298 SLDYKKPSA--DGNAGSVNLQPFIDALSDAAAVQFVTAPSAA 337
             SLDYKKP    D     VNL+PFI AL++A  + +VTAPSAA
Sbjct:   303 SLDYKKPVTVVDTEVDLVNLKPFITALTEAGRLNYVTAPSAA 344
GO:0005575 "cellular_component" evidence=ND
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0009414 "response to water deprivation" evidence=IEP
GO:0009651 "response to salt stress" evidence=IEP;IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0047216 "inositol 3-alpha-galactosyltransferase activity" evidence=IDA
GO:0009408 "response to heat" evidence=IEP
GO:0009644 "response to high light intensity" evidence=IEP
GO:0042542 "response to hydrogen peroxide" evidence=IEP
GO:0006012 "galactose metabolic process" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009409 "response to cold" evidence=IMP
TAIR|locus:2027549 GolS2 "galactinol synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XGN4 GOLS1 "Galactinol synthase 1" [Ajuga reptans (taxid:38596)] Back     alignment and assigned GO terms
TAIR|locus:2012320 GolS3 "galactinol synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036576 GolS4 "galactinol synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XGN3 GOLS2 "Galactinol synthase 2" [Ajuga reptans (taxid:38596)] Back     alignment and assigned GO terms
TAIR|locus:2136829 GolS6 "galactinol synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195668 GolS7 "galactinol synthase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172848 GolS5 "AT5G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145855 GolS10 "galactinol synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C7G304GOLS2_SOLLC2, ., 4, ., 1, ., 1, 2, 30.77670.98810.9852N/Ano
Q8H1S1GOLS6_ARATH2, ., 4, ., 1, ., 1, 2, 30.70880.91390.9166nono
O80518GOLS3_ARATH2, ., 4, ., 1, ., 1, 2, 30.75860.92580.9341nono
F4KED2GOLSA_ARATH2, ., 4, ., 1, ., 1, 2, 30.70560.87830.9024nono
Q9FXB2GOLS2_ARATH2, ., 4, ., 1, ., 1, 2, 30.80570.92580.9313nono
Q947G8GOLS1_SOLLC2, ., 4, ., 1, ., 1, 2, 30.63140.88130.9339N/Ano
O22693GOLS4_ARATH2, ., 4, ., 1, ., 1, 2, 30.71680.98510.9940nono
O22893GOLS1_ARATH2, ., 4, ., 1, ., 1, 2, 30.79230.99100.9709yesno
Q9XGN4GOLS1_AJURE2, ., 4, ., 1, ., 1, 2, 30.72400.97920.9909N/Ano
Q9XGN3GOLS2_AJURE2, ., 4, ., 1, ., 1, 2, 30.75160.85750.9897N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
PLN00176333 PLN00176, PLN00176, galactinol synthase 0.0
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 2e-94
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 1e-62
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 2e-15
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 1e-13
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 3e-13
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 2e-09
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 5e-07
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information 
 Score =  693 bits (1791), Expect = 0.0
 Identities = 276/336 (82%), Positives = 291/336 (86%), Gaps = 3/336 (0%)

Query: 2   APPELVQTAVKPAGLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVA 61
             PEL  T  K A      A    RAYVTFLAGNGDYVKGVVGLAKGLRKVK+AYPLVVA
Sbjct: 1   MAPEL--TVKKIAASPKALAKPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVA 58

Query: 62  VLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYVINYSKLRIWEFVEYSKMIY 121
           VLPDVPEEHR IL SQGCIVREIEPVYPP+NQTQ+AMAYYVINYSKLRIWEFVEYSKMIY
Sbjct: 59  VLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIY 118

Query: 122 LDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGE 181
           LDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWS TPQYKIGYCQQCPD+V WPAE+G 
Sbjct: 119 LDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGP 178

Query: 182 PPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVL 241
           PP LYFNAGMFVFEPS+STY DLLET+K+TPPT FAEQDFLNM+F+ IYKPIP VYNLVL
Sbjct: 179 PPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVL 238

Query: 242 AMLWRHPENVELDKVKVVHYCAAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDESLDY 301
           AMLWRHPENVELDKVKVVHYCAAGSKPWR+TG+EENM RED+KMLVKKWWDIYNDESLDY
Sbjct: 239 AMLWRHPENVELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDESLDY 298

Query: 302 KKPSADGNAGSVNLQPFIDALSDAAAVQFVTAPSAA 337
           K            LQPFI ALS+A  V +V APSAA
Sbjct: 299 KNFVPADEEEV-KLQPFIAALSEAGVVSYVPAPSAA 333

Length = 333
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
PLN02523559 galacturonosyltransferase 99.96
PLN02718603 Probable galacturonosyltransferase 99.96
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.95
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.94
PLN02659534 Probable galacturonosyltransferase 99.94
PLN02867535 Probable galacturonosyltransferase 99.94
PLN02769629 Probable galacturonosyltransferase 99.94
PLN02870533 Probable galacturonosyltransferase 99.93
PLN02742534 Probable galacturonosyltransferase 99.93
PLN02829639 Probable galacturonosyltransferase 99.92
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.91
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.71
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 99.33
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.27
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.98
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 97.46
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 94.5
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 91.78
PF07801142 DUF1647: Protein of unknown function (DUF1647); In 90.68
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 90.17
PLN03181453 glycosyltransferase; Provisional 87.77
KOG4748364 consensus Subunit of Golgi mannosyltransferase com 84.4
cd02515271 Glyco_transf_6 Glycosyltransferase family 6 compri 80.15
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-67  Score=496.00  Aligned_cols=314  Identities=86%  Similarity=1.457  Sum_probs=286.1

Q ss_pred             CCCeEEEEEEeeCCCcHHHHHHHHHHHHhhCCCCcEEEEECCCCCHHHHHHHHHcCcEEEEeeeeCCCCchhhhhhhccc
Q 019647           23 LPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQTQYAMAYYV  102 (337)
Q Consensus        23 ~~~~AyvT~l~~d~~Yl~~a~vll~SL~~~~~~~~lvilv~~~is~~~~~~L~~~~~~i~~V~~i~~~~~~~~~~~~~~~  102 (337)
                      .+++||||+|++|++|++|+.||++||+++++.++++|+++++++++.++.|++.|+.+++|+++.+++++.++..+++.
T Consensus        20 ~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~~~   99 (333)
T PLN00176         20 PAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAYYV   99 (333)
T ss_pred             cCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccchhh
Confidence            67999999999999999999999999999999999999999999999999999999999999988766655555555566


Q ss_pred             ccccceecccccccceeEEEecccccccCchhhhCCCCCceeeeechhccCCCCCCCcccccccccCCCCCCCCcccCCC
Q 019647          103 INYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEP  182 (337)
Q Consensus       103 ~~y~KL~i~~L~~ydrVLYLDaDilV~~dideLf~~~~~~iaAv~d~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~g~~  182 (337)
                      .+|+||++|++++||||||||+|+||++|||+||+++.+.+|||.||+|+..|++++++.+++|+.+|++++||..+|.+
T Consensus       100 i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~~  179 (333)
T PLN00176        100 INYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPP  179 (333)
T ss_pred             hhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhccCC
Confidence            78999999999999999999999999999999999987779999999999889999999999999999999999777766


Q ss_pred             CCccccceeEEEecCHHHHHHHHHHHhcCCCCCCCChHHHHHHhcCceeeccCcccccchhhhcCCccCCCCCeEEEEee
Q 019647          183 PALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYC  262 (337)
Q Consensus       183 ~~~yfNsGVmlin~~~~~~~~l~~~~~~~~~~~~~DQdiLN~~f~~~~~~L~~~yN~~~~~~~~~~~~~~~~~~~IiHf~  262 (337)
                      +..||||||||++|+.++++++++.++....+.|+|||+||.+|.++|+.||.+||++..+.|++++.+..++++||||+
T Consensus       180 ~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~~~~~~~~~~vkIIHY~  259 (333)
T PLN00176        180 PPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRHPENVELDKVKVVHYC  259 (333)
T ss_pred             CCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhhChhhcccCCcEEEEee
Confidence            67899999999999999999999998766567889999999999999999999999998888888877777899999999


Q ss_pred             cCCCCCCCcCCCCCccchhhhHHHHHHHHHHHhhccccccCCCCCCCCCCCCcchhHhhhccccceeeecCCCCC
Q 019647          263 AAGSKPWRFTGEEENMQREDVKMLVKKWWDIYNDESLDYKKPSADGNAGSVNLQPFIDALSDAAAVQFVTAPSAA  337 (337)
Q Consensus       263 g~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (337)
                      |+..|||+..+.+.++++++...+.++||++|+++.+++++..... .....++||+.|++.+..|.+++|||||
T Consensus       260 ~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (333)
T PLN00176        260 AAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDESLDYKNFVPAD-EEEVKLQPFIAALSEAGVVSYVPAPSAA  333 (333)
T ss_pred             CCCCCCCCCCCcccCCChHHHHHHHHHHHHHhcccccccccccccc-ccccccchhhhhcccccccccccCCCCC
Confidence            6347999999888899988899999999999999999999877653 5567789999999999999999999997

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 2e-18
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 2e-18
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 3e-18
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 5e-18
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 6e-18
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 8e-18
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 9e-18
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 1e-17
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 2e-17
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 2e-17
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 2e-17
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 2e-17
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 6e-17
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 9e-17
1g9r_A311 Crystal Structure Of Galactosyltransferase Lgtc In 3e-04
1ss9_A311 Crystal Structural Analysis Of Active Site Mutant Q 6e-04
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure 
Iteration: 1

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 59/298 (19%)
Query: 22  SLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIV 81
           S+  +A+VT L  N  Y KG + L   L++ +T   LVV   P V +  R +LE+    V
Sbjct: 22  SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 80
Query: 82  REIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLP 139
             ++ +   D+     M      +  +KL  W   +YSK +++D D  V  NID LFD  
Sbjct: 81  IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 140
Query: 140 DGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSIS 199
           +                             PD   WP          FN+G+FV++PS+ 
Sbjct: 141 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 166
Query: 200 TYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENVEL- 253
           TY+ LL            +Q  LN +F       I K +P +YNL    ++ +    ++ 
Sbjct: 167 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 226
Query: 254 -DKVKVVHYCAAGSKPWRFT-----------GEEENMQREDVKMLVKKWWDIYNDESL 299
               KVVH+     KPW +T             + NM   +  +L   WW+I+    L
Sbjct: 227 GASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTNVL 280
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311 Back     alignment and structure
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 2e-56
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 2e-55
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 8e-17
3tzt_A276 Glycosyl transferase family 8; structural genomics 9e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
 Score =  183 bits (465), Expect = 2e-56
 Identities = 76/299 (25%), Positives = 119/299 (39%), Gaps = 53/299 (17%)

Query: 22  SLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIV 81
           S+  +A+VT L  N  Y KG + L   L++ +T   LVV   P V +  R +LE+    V
Sbjct: 1   SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59

Query: 82  REIEPVYPPD--NQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLP 139
             ++ +   D  + T        +  +KL  W   +YSK +++D D  V  NID LFD  
Sbjct: 60  IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119

Query: 140 DGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSIS 199
           +    A  D                          WP          FN+G+FV++PS+ 
Sbjct: 120 E--LSAAPDPG------------------------WPD--------CFNSGVFVYQPSVE 145

Query: 200 TYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENVEL- 253
           TY+ LL            +Q  LN +F       I K +P +YNL    ++ +    ++ 
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 205

Query: 254 -DKVKVVHYCAAGSKPWRFT--------GEEENMQREDVKMLVKKWWDIYNDESLDYKK 303
               KVVH+     KPW +T          E +         +  WW+I+    L   +
Sbjct: 206 GASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTTNVLPLLQ 263
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=1.3e-45  Score=338.72  Aligned_cols=242  Identities=30%  Similarity=0.525  Sum_probs=196.7

Q ss_pred             CCCeEEEEEEeeCCCcHHHHHHHHHHHHhhCCCCcEEEEECCCCCHHHHHHHHHcCcEEEEeeeeCCCCc--hhhhhhhc
Q 019647           23 LPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDN--QTQYAMAY  100 (337)
Q Consensus        23 ~~~~AyvT~l~~d~~Yl~~a~vll~SL~~~~~~~~lvilv~~~is~~~~~~L~~~~~~i~~V~~i~~~~~--~~~~~~~~  100 (337)
                      .+++||||+ ++|++|+++++|+++||++++++++++++++++++++.++.|++.+.+++.|+++..+..  ...+.++.
T Consensus         2 ~~~~AyvTl-~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~   80 (263)
T 3u2u_A            2 MTDQAFVTL-TTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPE   80 (263)
T ss_dssp             TTTEEEEEE-ESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTT
T ss_pred             CcceEEEEE-EECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcc
Confidence            468999995 579999999999999999999999999999999999999999999999988887765431  11123344


Q ss_pred             ccccccceecccccccceeEEEecccccccCchhhhCCCCCceeeeechhccCCCCCCCcccccccccCCCCCCCCcccC
Q 019647          101 YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMG  180 (337)
Q Consensus       101 ~~~~y~KL~i~~L~~ydrVLYLDaDilV~~dideLf~~~~~~iaAv~d~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~g  180 (337)
                      +..+|+||.+|++++||||||||+|++|++||++||+++  .+||++|.                        +||    
T Consensus        81 ~~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~--~~aA~~d~------------------------~~~----  130 (263)
T 3u2u_A           81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE--ELSAAPDP------------------------GWP----  130 (263)
T ss_dssp             GGGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSC--SSEEEECT------------------------TST----
T ss_pred             hhHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCC--cceEeccC------------------------CCC----
Confidence            567999999999999999999999999999999999998  48888752                        232    


Q ss_pred             CCCCccccceeEEEecCHHHHHHHHHHHhcCCCCCCCChHHHHHHhcC-----ceeeccCcccccchhhhcCCccC--CC
Q 019647          181 EPPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENV--EL  253 (337)
Q Consensus       181 ~~~~~yfNsGVmlin~~~~~~~~l~~~~~~~~~~~~~DQdiLN~~f~~-----~~~~L~~~yN~~~~~~~~~~~~~--~~  253 (337)
                          .|||||||||+|+..+++++++.+.+..++.++|||+||.+|.+     .++.||.+||++....|++...+  ..
T Consensus       131 ----~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~  206 (263)
T 3u2u_A          131 ----DCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFG  206 (263)
T ss_dssp             ----TSEEEEEEEECCCHHHHHHHHHHHHHHCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHG
T ss_pred             ----ccccCeEEEEcccHHHHHHHHHHHHhcCCCCcccHHHHHHHhccccccCeeEeCCcccccccchhccccHHHHhhc
Confidence                69999999999999999999999876566788999999999987     78999999999987555432211  24


Q ss_pred             CCeEEEEeecCCCCCCCcCCCCC--------ccchhhhHHHHHHHHHHHhhcccc
Q 019647          254 DKVKVVHYCAAGSKPWRFTGEEE--------NMQREDVKMLVKKWWDIYNDESLD  300 (337)
Q Consensus       254 ~~~~IiHf~g~~~KPW~~~~~~~--------~~~~~~~~~~~~~Ww~~~~~~~~~  300 (337)
                      ++++||||+| ..|||+....+.        ......+..+..+||+.|.+..+.
T Consensus       207 ~~~~IIHf~g-~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~~~~  260 (263)
T 3u2u_A          207 ASAKVVHFLG-RVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTTNVLP  260 (263)
T ss_dssp             GGCSEEECCS-SSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHHHHTGG
T ss_pred             CCeEEEEECC-CCcCCCCCCCCCCCcccccCCCcchhHHHHHHHHHHHHHhhcCc
Confidence            6899999999 899999853211        011111368899999999876543
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 4e-50
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 3e-18
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  165 bits (419), Expect = 4e-50
 Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 53/289 (18%)

Query: 26  RAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIE 85
           +A+VT L  N  Y KG + L   L++ +T+  L V   P V +  R  LE     V  ++
Sbjct: 4   QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62

Query: 86  PVYPPD--NQTQYAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYF 143
            +   D  + T        +  +KL  W   +YSK +++D D  V  NID LF+      
Sbjct: 63  ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE--EL 120

Query: 144 YAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHD 203
            A  D                                      FN+G+FV++PS+ TY+ 
Sbjct: 121 SAAPDPG--------------------------------WPDCFNSGVFVYQPSVETYNQ 148

Query: 204 LLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENVEL--DKV 256
           LL            +Q  LN +F       I K +P +YNL    ++ +    +      
Sbjct: 149 LLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANA 208

Query: 257 KVVHYCAAGSKPWRFT----GEEENMQREDVKM----LVKKWWDIYNDE 297
           KVVH+    +KPW +T     +    +  D  M     +  WWDI+   
Sbjct: 209 KVVHFL-GQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTS 256
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 94.69
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 94.65
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.8e-41  Score=308.07  Aligned_cols=242  Identities=29%  Similarity=0.487  Sum_probs=190.4

Q ss_pred             CCeEEEEEEeeCCCcHHHHHHHHHHHHhhCCCCcEEEEECCCCCHHHHHHHHHcCcEEEEeeeeCCCCchh--hhhhhcc
Q 019647           24 PGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDNQT--QYAMAYY  101 (337)
Q Consensus        24 ~~~AyvT~l~~d~~Yl~~a~vll~SL~~~~~~~~lvilv~~~is~~~~~~L~~~~~~i~~V~~i~~~~~~~--~~~~~~~  101 (337)
                      +..|||| +++|++|+++|+|+++||+++++.++++|+++++++++.++.|+..+..++.++.+..+....  .....++
T Consensus         2 ~~~A~vt-~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           2 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CSEEEEE-EESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CccEEEE-EEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            5689999 557899999999999999999999999999999999999999999999988887776543221  1112356


Q ss_pred             cccccceecccccccceeEEEecccccccCchhhhCCCCCceeeeechhccCCCCCCCcccccccccCCCCCCCCcccCC
Q 019647          102 VINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGE  181 (337)
Q Consensus       102 ~~~y~KL~i~~L~~ydrVLYLDaDilV~~dideLf~~~~~~iaAv~d~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~g~  181 (337)
                      ..+|+||++|++.+||||||||||+||++||++||+.+.  ++|+.+..                               
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~--~~a~~~~~-------------------------------  127 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE--LSAAPDPG-------------------------------  127 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCS--SEEEECSS-------------------------------
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCc--cceeccCC-------------------------------
Confidence            688999999999999999999999999999999999874  56665420                               


Q ss_pred             CCCccccceeEEEecCHHHHHHHHHHHhcCCCCCCCChHHHHHHhcC-----ceeeccCcccccchhhhcCCcc--CCCC
Q 019647          182 PPALYFNAGMFVFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPEN--VELD  254 (337)
Q Consensus       182 ~~~~yfNsGVmlin~~~~~~~~l~~~~~~~~~~~~~DQdiLN~~f~~-----~~~~L~~~yN~~~~~~~~~~~~--~~~~  254 (337)
                       ...|||||||+++|++++++.+.+.+.+...+.+.||+++|..+.+     .+..|+..||+.....+.....  ....
T Consensus       128 -~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (263)
T d1ll2a_         128 -WPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA  206 (263)
T ss_dssp             -STTSEEEEEEEECCCHHHHHHHHHHHHHTCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGG
T ss_pred             -CcccccCCcEEECccHHHHHHHHHHHHhhCCCChhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhhhHhHHhhcC
Confidence             1268999999999999999999998877666778999999999975     4677888888876554432111  1246


Q ss_pred             CeEEEEeecCCCCCCCcCCCCC-c--cc-----hhhhHHHHHHHHHHHhhccccc
Q 019647          255 KVKVVHYCAAGSKPWRFTGEEE-N--MQ-----REDVKMLVKKWWDIYNDESLDY  301 (337)
Q Consensus       255 ~~~IiHf~g~~~KPW~~~~~~~-~--~~-----~~~~~~~~~~Ww~~~~~~~~~~  301 (337)
                      +++||||+| ..|||+...... +  ..     ......+.+.||++|++++..+
T Consensus       207 ~~~iIHf~g-~~KPW~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ww~~~~~~~~~~  260 (263)
T d1ll2a_         207 NAKVVHFLG-QTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPL  260 (263)
T ss_dssp             GCSEEECCS-SCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHH
T ss_pred             CeEEEEeCC-CCCCCCCCCCCCccccccchhhccccHHHHHHHHHHHHhcccccC
Confidence            899999999 799998652110 0  00     0113578889999999987653
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure