Citrus Sinensis ID: 019659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVCDLFYFGSFGNIFSGVNKKLLLLLFVKH
Secondary Structure (PSIPRED)
ccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHcHHHHHHccccHHHHHHHHHcccccccHHHHHHccccccccHHHHHHHccccccccEEEEccEEEEccccccccccccEEEEEEEEEEEEccccEEEEEccccHHHHHHHHcccccccccEEEEEEEEEccEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHcccccccEEEEEcccccccccccccccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEccHHHHHHHccccHHHccccccHHHHccccEccccccccccccccccccHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHcccEEEcEEEEEEEEEEEcccccccccccEEEEEEEEEEEEccccEEEEEEccccHHHHHHHHcccccccccEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEEEEcccccccccHHHccHHcccccccccccccccHHcccccccEEEEcHHHHHHHHHcccccHHccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masdfamtIPAELESSLRLKTVHHFVtqrpwldlyginvrpvapfgsvsrkpyvdtalihrclpdELLFEVFArmspydlgkascvcrkwkytirnpvfWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLrpriridglyvsrNTYIRAGVAewkitnpvhIVCYYRYmrffpsgrfiyknsSQKIKDVAKIMNFRAAKadcvftghytlseEKVEAAvlypglrptVLRIRLRLrgttagannRMDLLSLVTSgmndnevnghdediLGVVEgwqddethnpdvpavshkrgltpfvfvpfeevcdlfyfgsfgnifsGVNKKLLLLLFVKH
Flexible Loop (DISEMBL)
MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSryegswrkmwllrpriridglyvSRNTYIRagvaewkitnpVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVeaavlypglrptvLRIRLrlrgttagannrmDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVCDLFYFGSFGNIFSGVNKKLLLLLFVKH
Low Complexity Region (SEG)
MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVCDLFYFGSFGNIFSGVNkklllllFVKH
Disordered region (IsUnstruct)
***************SLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDD******VPAVSHKRGLTPFVFVPFEEVCDLFYFGSFGNIFSGVNKKLLLLLFV**
Disordered Region (DISOPRED)
*****AM**************************************************LIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLR***********MDLL***************************************SHKRGLTPFVFVPFEEVCDLFYFGSFGNIFSGVNKKLLLLLFVKH
Disordered Region (DISEMBL)
MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVCDLFYFGSFGNIFSGVNKKLLLLLFVKH
Disordered Region (DISPRO)
***DFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVCDLFYFGSFGNIFSGVNKKLLLLLFVKH
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVCDLFYFGSFGNIFSGVNKKLLLLLFVKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q9XI00	328	F-box protein 7 OS=Arabid	yes	no	0.913	0.939	0.790	1e-152
Q9UK97	447	F-box only protein 9 OS=H	yes	no	0.474	0.357	0.350	2e-21
Q8BK06	437	F-box only protein 9 OS=M	yes	no	0.474	0.366	0.356	2e-21
Q3ZBT2	437	F-box only protein 9 OS=B	yes	no	0.474	0.366	0.350	8e-21
Q5U2X1	435	F-box only protein 9 OS=R	yes	no	0.474	0.367	0.350	1e-20
F6Y9J3	431	F-box only protein 9 OS=X	yes	no	0.474	0.371	0.344	3e-20
Q6P3K3	421	F-box only protein 9 OS=D	yes	no	0.489	0.391	0.329	6e-19
O74531	361	F-box protein pof7 OS=Sch	yes	no	0.525	0.490	0.257	8e-14
Q4KLI9	569	F-box/WD repeat-containin	no	no	0.237	0.140	0.283	2e-05
Q12347	344	F-box protein HRT3 OS=Sac	yes	no	0.498	0.488	0.229	4e-05

>sp|Q9XI00|SKI32_ARATH F-box protein 7 OS=Arabidopsis thaliana GN=SKIP32 PE=1 SV=1

 Score =  537 bits (1384), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 246/311 (79%), Positives = 287/311 (92%), Gaps = 3/311 (0%)

Query: 1   MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIH 60
           M SD A+TIP+ELES+LRL+TV +F+T+RPWLDLYG++VRPV PFGS SRKP+ D ALIH
Sbjct: 1   MTSD-ALTIPSELESALRLRTVQYFITKRPWLDLYGVHVRPVPPFGSTSRKPHFDPALIH 59

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKIL 120
           RCLPDELLFEVFARM PYDLG+ASCVCRKW+YT+RNP+FWRNACLKAWQ +GV+ENYKIL
Sbjct: 60  RCLPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAGVIENYKIL 119

Query: 121 QSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGR 180
           QS+Y+GSWRKMWLLR R+R DGLYVSRNTYIRAG+AEWKITNPVHIVCYYRY+RF+PSGR
Sbjct: 120 QSKYDGSWRKMWLLRSRVRTDGLYVSRNTYIRAGIAEWKITNPVHIVCYYRYIRFYPSGR 179

Query: 181 FIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTL--SEEKVEAAVLYPGLRPTVLRIRLR 238
           F+YKNSSQK+KDVAK MNF+A+K++ ++ G YTL  S++K+EAAVLYPG RPTVLRIRLR
Sbjct: 180 FLYKNSSQKLKDVAKYMNFKASKSENLYKGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLR 239

Query: 239 LRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGL 298
           LRGT  GANNRMDLLSLVTSG+ND E++  +EDILG+VEGW+DDETHNPD+PAVSHKRG+
Sbjct: 240 LRGTAIGANNRMDLLSLVTSGVNDEEISSTEEDILGLVEGWEDDETHNPDIPAVSHKRGM 299

Query: 299 TPFVFVPFEEV 309
           T FVFVPFEEV
Sbjct: 300 TAFVFVPFEEV 310

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Required for efficient protein synthesis during temperature stress conditions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9UK97|FBX9_HUMAN F-box only protein 9 OS=Homo sapiens GN=FBXO9 PE=1 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 14/174 (8%)

Query: 51  KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
           +P ++++ IH   LP E+L  +F  +   DL      + S VCR +    R+P  WR AC
Sbjct: 178 QPELESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLAC 237

Query: 105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
           LK W  S +    K++      SWR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct: 238 LKVWGRSCI----KLVPY---TSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 290

Query: 164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
            H V YYRY+RFFP G  +   + ++ + +   +  R  + D +  GHY LS++
Sbjct: 291 WHQVEYYRYIRFFPDGHVMMLTTPEEPQSIVPRLRTRNTRTDAILLGHYRLSQD 344

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q8BK06|FBX9_MOUSE F-box only protein 9 OS=Mus musculus GN=Fbxo9 PE=2 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 51  KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
           +P ++T+  H   LP E+L  +F  +   DL      + S VCR +    R+P  WR AC
Sbjct: 168 QPELETSQTHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLAC 227

Query: 105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
           LK W  S +    K++      SWR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct: 228 LKVWGRSCM----KLVPY---ASWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 280

Query: 164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
            H V YYRYMRFFP G  +   + ++   +   +  R  + D +  GHY LS++
Sbjct: 281 WHQVEYYRYMRFFPDGHVMMLTTPEEPPSIVPRLRTRNTRTDAILLGHYRLSQD 334

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Mus musculus (taxid: 10090)

>sp|Q3ZBT2|FBX9_BOVIN F-box only protein 9 OS=Bos taurus GN=FBXO9 PE=2 SV=2

 Score =  101 bits (251), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 14/174 (8%)

Query: 51  KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
           +P ++++  H   LP E+L  VF  +   DL      + S VCR +    R+P  WR AC
Sbjct: 168 QPELESSQTHISALPMEVLMYVFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLAC 227

Query: 105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
           LK W  S +    K++      SWR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct: 228 LKVWGRSCI----KLVPY---TSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 280

Query: 164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
            H V YYRY+RFFP G  +   + ++ + +   +  R  + D +  GHY LS++
Sbjct: 281 WHQVEYYRYVRFFPDGHVMMLTTPEEPQSIVPRLRTRNTRTDAILLGHYRLSQD 334

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Bos taurus (taxid: 9913)

>sp|Q5U2X1|FBX9_RAT F-box only protein 9 OS=Rattus norvegicus GN=Fbxo9 PE=2 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 51  KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
           +P ++T+  H   LP E+L  +F  +   DL      + S VCR +    R+P  WR AC
Sbjct: 166 QPELETSQTHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLAC 225

Query: 105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
           LK W  S +    K++      SWR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct: 226 LKVWGRSCM----KLVPF---SSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 278

Query: 164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
            H V YYRY+RFFP G  +   + ++   +   +  R  + D +  GHY LS++
Sbjct: 279 WHQVEYYRYIRFFPDGHVMMLTTPEEPPSIVPRLRTRNTRTDAILLGHYRLSQD 332

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|F6Y9J3|FBX9_XENTR F-box only protein 9 OS=Xenopus tropicalis GN=fbxo9 PE=3 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 14/174 (8%)

Query: 51  KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
           +P +D    H   LP E+L  +F  +   DL      + S VC+ +    R+P  WR AC
Sbjct: 161 QPDIDVTQTHISVLPMEVLMYIFRWVVSSDLDLRALEQLSLVCKGFYICARDPEIWRLAC 220

Query: 105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
           LK W  + V    KI+      +WR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct: 221 LKVWGRNCV----KIVPY---TTWRQMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 273

Query: 164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
            H V YYRY+RFFP G  +   + +  + +   +  + A+ D +  GHY LS++
Sbjct: 274 WHQVEYYRYLRFFPDGHVMMLTTPEDPQTIVPRLRTKNARTDAMLLGHYRLSQD 327

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and acts as a regulator of mTOR signaling.

Xenopus tropicalis (taxid: 8364)

>sp|Q6P3K3|FBX9_DANRE F-box only protein 9 OS=Danio rerio GN=fbxo9 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 14/179 (7%)

Query: 54  VDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNACLKA 107
            +T+ +H   LP E+L  +F  +   DL      + S VCR +    R+P  WR+ACL+ 
Sbjct: 154 TETSQVHISALPFEVLMYIFRWVVSCDLDLRALEQLSLVCRGFYICARDPEIWRSACLRV 213

Query: 108 WQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNPVHI 166
           W  S      K+L      SWR+M+L RPR+R DG+Y+S+ +YIR G           H 
Sbjct: 214 WGRSCT----KMLPY---SSWREMFLERPRVRFDGVYISKTSYIRQGEESLDGFYRAWHQ 266

Query: 167 VCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLY 225
           V YYRY+RFFP G+ +   + +        +  + ++ D +  GHY LS++      +Y
Sbjct: 267 VEYYRYLRFFPDGQVMMLTTPEDPLVTVPRLRSKNSRMDSIMFGHYRLSQDTDNQTKVY 325

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and acts as a regulator of mTOR signaling.

Danio rerio (taxid: 7955)

>sp|O74531|POF7_SCHPO F-box protein pof7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof7 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 25/202 (12%)

Query: 63  LPDELLFEVFARM--SPYDLGKASCV---CRKWKYTIRNPVFWRNACL-----KAWQLSG 112
           LPDE+L  +        +DL   S +   C+ +   +R    +R+ C      K WQ S 
Sbjct: 115 LPDEVLLVILENCIRDLHDLRYLSSIALTCKHFAKALRADSLYRSFCYCSCEQKEWQQS- 173

Query: 113 VVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRY 172
           +    + L  +Y+ SW+ ++L +PR R DG Y+S   Y R G ++     P+H++ YYRY
Sbjct: 174 IKSIEEELVEKYQQSWKTLFLKKPRSRFDGCYISVCRYFRPGTSDTSWNQPIHLITYYRY 233

Query: 173 MRFFPSGRFIYKNSSQKIKDVAKIMNFRAA-------------KADCVFTGHYTLSEEKV 219
           +R +P+   I   SS +  DV +  + +                 +   TG ++++    
Sbjct: 234 LRLYPNSTCIVYQSSNEPNDVVRNFSVQNTSLFSPMSSSPMFSNGNVALTGSWSMTPSG- 292

Query: 220 EAAVLYPGLRPTVLRIRLRLRG 241
           E  ++YP  +      +L++RG
Sbjct: 293 EMLIVYPASQTYTYVQKLQVRG 314

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4KLI9|FBXW5_RAT F-box/WD repeat-containing protein 5 OS=Rattus norvegicus GN=Fbxw5 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 63  LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQS 122
           LPD L++++F  + P D+  A  VCR+W+   R+   WR    + +Q++  V  +    S
Sbjct: 9   LPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVARDVPRHPAATS 68

Query: 123 RYEGSWRKMWLLRPRIRIDGL 143
            YE  +R+++ + P + +  L
Sbjct: 69  WYE-EFRRLYDMVPCVEVQTL 88

Substrate recognition component of both SCF (SKP1-CUL1-F-box protein) and DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes. Substrate recognition component of the SCF(FBXW5) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of SASS6 during S phase, leading to prevent centriole reduplication. Substrate-specific adapter of the DCX(FBXW5) E3 ubiquitin-protein ligase complex which mediates the polyubiquitination and subsequent degradation of TSC2. May also act as a negative regulator of MAP3K7/TAK1 signaling in the interleukin-1B (IL1B) signaling pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q12347|HRT3_YEAST F-box protein HRT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRT3 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 37/205 (18%)

Query: 6   AMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFG---------SVSRKPYVDT 56
           A+ I   +ES  R K +  ++  +    L G+++   AP           SV     +  
Sbjct: 40  ALKIHDNVESLYRKKILDEWMLHKK---LSGLSMTTDAPDEQNETGKDDLSVEENAELQP 96

Query: 57  ALIHRCLPDELLFEVFAR---MSPYDLGKASCVCRKW---------------KYTIRNPV 98
             I   LPD++L  +  +   MS       S  C  +               KY     +
Sbjct: 97  CWILEILPDDILLRIIKKVILMSGESWVNLSMTCSTFSKLCFHDSVPFKTFAKYIYSKQI 156

Query: 99  FWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGV--- 155
           + + A      L+G+ +     +  + G   +M   RP I+ +G+Y+S   Y+R G    
Sbjct: 157 YDKMAM----DLNGITDINTFEKEIWRGDDYRMLRERPYIKFEGVYISVVNYVRYGSNAE 212

Query: 156 AEWKITNPVHIVCYYRYMRFFPSGR 180
           +   +  PVH++ YYRY RF+ +G+
Sbjct: 213 SSLSLLKPVHMITYYRYFRFYENGQ 237

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
358248956	329	uncharacterized protein LOC100786704 [Gl	0.913	0.936	0.853	1e-160
449449749	379	PREDICTED: F-box protein 7-like [Cucumis	0.916	0.815	0.838	1e-159
357463567	329	F-box protein [Medicago truncatula] gi|2	0.913	0.936	0.831	1e-159
449516302	327	PREDICTED: F-box protein 7-like [Cucumis	0.916	0.944	0.838	1e-159
356509387	329	PREDICTED: F-box protein 7-like [Glycine	0.913	0.936	0.837	1e-158
388513465	329	unknown [Lotus japonicus]	0.913	0.936	0.840	1e-158
359492545	327	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.916	0.944	0.834	1e-157
297845164	328	F-box family protein [Arabidopsis lyrata	0.913	0.939	0.794	1e-151
18395030	328	F-box protein 7 [Arabidopsis thaliana] g	0.913	0.939	0.790	1e-150
255545378	316	protein with unknown function [Ricinus c	0.919	0.981	0.695	1e-134

>gi|358248956|ref|NP_001239713.1| uncharacterized protein LOC100786704 [Glycine max] gi|255635177|gb|ACU17944.1| unknown [Glycine max]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 263/308 (85%), Positives = 291/308 (94%)

Query: 2   ASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHR 61
           ASDFA+ + +ELES LRLKTV++FVT+RPWLDLYG+NVRPVAP GS SR+PYVD ALIHR
Sbjct: 4   ASDFALAVSSELESVLRLKTVNYFVTRRPWLDLYGVNVRPVAPVGSASRRPYVDPALIHR 63

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQ 121
            LPDELLFEVFARM+PYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL G+VENYKILQ
Sbjct: 64  SLPDELLFEVFARMTPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLFGIVENYKILQ 123

Query: 122 SRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRF 181
           S+Y+GSWRKMWLLRPR+R DGLYVSRNTYIRAGVAEWKITNPVH+VCY+RY+RFFPSGRF
Sbjct: 124 SKYDGSWRKMWLLRPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYLRFFPSGRF 183

Query: 182 IYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRG 241
           +YKNSSQKIKDVAK MNFR++K DCVF GHYTLS++KVEAAVLYPG+RPTVLRIRLRLRG
Sbjct: 184 LYKNSSQKIKDVAKCMNFRSSKIDCVFGGHYTLSDDKVEAAVLYPGMRPTVLRIRLRLRG 243

Query: 242 TTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPF 301
           TT GANNRMDL+SLVTSG+N +E +  +EDILGVVEGWQDDETHNPDVPAVSHKRG+TPF
Sbjct: 244 TTTGANNRMDLISLVTSGVNSSEASAPEEDILGVVEGWQDDETHNPDVPAVSHKRGMTPF 303

Query: 302 VFVPFEEV 309
           VFVPFEEV
Sbjct: 304 VFVPFEEV 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449749|ref|XP_004142627.1| PREDICTED: F-box protein 7-like [Cucumis sativus]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 259/309 (83%), Positives = 292/309 (94%)

Query: 1   MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIH 60
           M+SD+A+ +PAELES+LRLK V +FVT+RPWLDLYG+NVRPVAPFGS SR+P+VD ALIH
Sbjct: 53  MSSDYALKVPAELESALRLKAVQYFVTKRPWLDLYGVNVRPVAPFGSSSRQPFVDPALIH 112

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKIL 120
           RCLPDELLFEVFARM+PYDLG+ASCVCRKW+YTIRNPVFWRNACLKAWQLSGVVENYK L
Sbjct: 113 RCLPDELLFEVFARMTPYDLGRASCVCRKWRYTIRNPVFWRNACLKAWQLSGVVENYKFL 172

Query: 121 QSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGR 180
           QS Y+GSWRKMWLLRPRIR DGLYVSRNTYIRAG+AEWKITNPVH+VCY+RY+RFFPSGR
Sbjct: 173 QSMYDGSWRKMWLLRPRIRTDGLYVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGR 232

Query: 181 FIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLR 240
           F+YKNSSQKIKDVAK MNFRA+KADC+F GHYTLS++KVEAAVLY G RPTVLRIR+RLR
Sbjct: 233 FLYKNSSQKIKDVAKCMNFRASKADCIFGGHYTLSDDKVEAAVLYSGARPTVLRIRMRLR 292

Query: 241 GTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTP 300
           GT+ GANNRMDLL+LVTSGMN+NEV   +EDILG+VE W+DDETHNPDVPAVSHKRGLTP
Sbjct: 293 GTSTGANNRMDLLTLVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTP 352

Query: 301 FVFVPFEEV 309
           F+FVPF++V
Sbjct: 353 FIFVPFDQV 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463567|ref|XP_003602065.1| F-box protein [Medicago truncatula] gi|217074340|gb|ACJ85530.1| unknown [Medicago truncatula] gi|355491113|gb|AES72316.1| F-box protein [Medicago truncatula] gi|388500196|gb|AFK38164.1| unknown [Medicago truncatula]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 256/308 (83%), Positives = 290/308 (94%)

Query: 2   ASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHR 61
            SDFA+T+P+ELES LRLKTV++FVT+RPWLDLYG+NVRPVAPFGS SRKP+VD++L+HR
Sbjct: 4   GSDFALTVPSELESVLRLKTVNYFVTRRPWLDLYGVNVRPVAPFGSASRKPHVDSSLLHR 63

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQ 121
           CLPDELLFEVFARM+PYD+GKASCVCRKW+YTIRNP FWRNACLK WQLSG VENYKILQ
Sbjct: 64  CLPDELLFEVFARMTPYDMGKASCVCRKWRYTIRNPAFWRNACLKGWQLSGAVENYKILQ 123

Query: 122 SRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRF 181
           S+Y+GSWRKMWLLRPR+R DGLY SRNTYIR GVAEWKITNPVH+VCYYRY+RFFPSG+F
Sbjct: 124 SKYDGSWRKMWLLRPRLRFDGLYASRNTYIRVGVAEWKITNPVHVVCYYRYLRFFPSGKF 183

Query: 182 IYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRG 241
           +YKNSSQKIKDV K MNFR++K DCVF GHYTL+++KVEAAVLYPG+RPTVLRIR+RLRG
Sbjct: 184 LYKNSSQKIKDVVKSMNFRSSKTDCVFGGHYTLTDDKVEAAVLYPGMRPTVLRIRMRLRG 243

Query: 242 TTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPF 301
           TT GANNRMDL+SLVTSG++ NE +  +EDILGVVEGWQDDETHNPDVPAVSHKRG+TPF
Sbjct: 244 TTTGANNRMDLISLVTSGVDTNEASTSEEDILGVVEGWQDDETHNPDVPAVSHKRGMTPF 303

Query: 302 VFVPFEEV 309
           VFVPFEEV
Sbjct: 304 VFVPFEEV 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516302|ref|XP_004165186.1| PREDICTED: F-box protein 7-like [Cucumis sativus]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 259/309 (83%), Positives = 292/309 (94%)

Query: 1   MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIH 60
           M+SD+A+ +PAELES+LRLK V +FVT+RPWLDLYG+NVRPVAPFGS SR+P+VD ALIH
Sbjct: 1   MSSDYALKVPAELESALRLKAVQYFVTKRPWLDLYGVNVRPVAPFGSSSRQPFVDPALIH 60

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKIL 120
           RCLPDELLFEVFARM+PYDLG+ASCVCRKW+YTIRNPVFWRNACLKAWQLSGVVENYK L
Sbjct: 61  RCLPDELLFEVFARMTPYDLGRASCVCRKWRYTIRNPVFWRNACLKAWQLSGVVENYKFL 120

Query: 121 QSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGR 180
           QS Y+GSWRKMWLLRPRIR DGLYVSRNTYIRAG+AEWKITNPVH+VCY+RY+RFFPSGR
Sbjct: 121 QSMYDGSWRKMWLLRPRIRTDGLYVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGR 180

Query: 181 FIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLR 240
           F+YKNSSQKIKDVAK MNFRA+KADC+F GHYTLS++KVEAAVLY G RPTVLRIR+RLR
Sbjct: 181 FLYKNSSQKIKDVAKCMNFRASKADCIFGGHYTLSDDKVEAAVLYSGARPTVLRIRMRLR 240

Query: 241 GTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTP 300
           GT+ GANNRMDLL+LVTSGMN+NEV   +EDILG+VE W+DDETHNPDVPAVSHKRGLTP
Sbjct: 241 GTSTGANNRMDLLTLVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTP 300

Query: 301 FVFVPFEEV 309
           F+FVPF++V
Sbjct: 301 FIFVPFDQV 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509387|ref|XP_003523431.1| PREDICTED: F-box protein 7-like [Glycine max]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 258/308 (83%), Positives = 292/308 (94%)

Query: 2   ASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHR 61
            SDFA+ + +ELES LRL+TV++FVT+RPWLDLYG+NVRPVAP GS SR+PYVD ALIHR
Sbjct: 4   GSDFALAVSSELESVLRLETVNYFVTRRPWLDLYGVNVRPVAPVGSASRRPYVDPALIHR 63

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQ 121
            LPDELLFEVFARM+PYDLG+ASCVCRKWKYTIRNPVFWRNACLKAWQLSG+VENY+ILQ
Sbjct: 64  SLPDELLFEVFARMTPYDLGRASCVCRKWKYTIRNPVFWRNACLKAWQLSGIVENYRILQ 123

Query: 122 SRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRF 181
           S+Y+GSWRKMWL RPR+R DGLYVSRNTYIRAGVAEWKITNPVH+VCY+RY+RFFPSGRF
Sbjct: 124 SKYDGSWRKMWLSRPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYLRFFPSGRF 183

Query: 182 IYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRG 241
           +YKNSSQK+KDVAK MNFR++KADCVF GHYTLS++KVEAAVLYPG+RPTVLRIRLR+RG
Sbjct: 184 LYKNSSQKVKDVAKCMNFRSSKADCVFGGHYTLSDDKVEAAVLYPGMRPTVLRIRLRIRG 243

Query: 242 TTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPF 301
           TT+GANNRMDL+SLVTSG+N +E +  +EDILGVVEGWQDDETHNPDVPAVSHKRG+TPF
Sbjct: 244 TTSGANNRMDLISLVTSGVNSSEASAPEEDILGVVEGWQDDETHNPDVPAVSHKRGMTPF 303

Query: 302 VFVPFEEV 309
           VFVPFEEV
Sbjct: 304 VFVPFEEV 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513465|gb|AFK44794.1| unknown [Lotus japonicus]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 259/308 (84%), Positives = 289/308 (93%)

Query: 2   ASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIHR 61
            SDFA+   +ELES LRLKTV +FVT+RPWLDLYGI VRPVAPFGS+SRKPYVD+ALIHR
Sbjct: 4   GSDFALASSSELESILRLKTVDYFVTRRPWLDLYGIKVRPVAPFGSISRKPYVDSALIHR 63

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQ 121
           CLPDELLFEVFARM+PYD+GKASCVCRKWKYTIRNPVFWR+ACLKAWQ SGVVENYKILQ
Sbjct: 64  CLPDELLFEVFARMTPYDMGKASCVCRKWKYTIRNPVFWRHACLKAWQFSGVVENYKILQ 123

Query: 122 SRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRF 181
           S+Y+GSWRKMWLLRPR+R DGLYVSRNTYIRAGVAEWKITNPVH+VCY+RY+RFFPSGRF
Sbjct: 124 SKYDGSWRKMWLLRPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYIRFFPSGRF 183

Query: 182 IYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRG 241
           +YKNSSQK+KDV K MNFR++KA+CVF G+YTLS++KVEAAVLYPGLRPTVLRIRLRLRG
Sbjct: 184 LYKNSSQKVKDVVKCMNFRSSKAECVFGGNYTLSDDKVEAAVLYPGLRPTVLRIRLRLRG 243

Query: 242 TTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPF 301
           T  GANNRMDL+SLVTSG+N +E +  +EDILGVV+GWQDDETHNPDVPAVSHKRG+ PF
Sbjct: 244 TATGANNRMDLISLVTSGVNSSEASAPEEDILGVVDGWQDDETHNPDVPAVSHKRGMAPF 303

Query: 302 VFVPFEEV 309
           VFVPFEEV
Sbjct: 304 VFVPFEEV 311

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492545|ref|XP_003634429.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein 7-like [Vitis vinifera]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 258/309 (83%), Positives = 289/309 (93%)

Query: 1   MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIH 60
           MASDFA+ +P ELE+  RL+TV +FVT RPWLDLYG++VRPVAPFGS S KP+VD ALIH
Sbjct: 1   MASDFALKVPPELEAESRLRTVQYFVTHRPWLDLYGVHVRPVAPFGSASSKPFVDPALIH 60

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKIL 120
           RCLPDELL EVFARM+PY LG+A+CVCRKW+YTIRNPVFWR+ACLKAWQLSGVVENYKIL
Sbjct: 61  RCLPDELLSEVFARMTPYTLGRAACVCRKWRYTIRNPVFWRSACLKAWQLSGVVENYKIL 120

Query: 121 QSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGR 180
           QSRYE SWRKMWLLRPR+R DGLYVSRNTYIRAGVAEW++TNPVH+VCY+RY+RFFPSGR
Sbjct: 121 QSRYESSWRKMWLLRPRVRTDGLYVSRNTYIRAGVAEWRVTNPVHVVCYFRYIRFFPSGR 180

Query: 181 FIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLR 240
           F+YKNSSQK+KDV K MN RA+KADCVF+GHYTLS++K+EAAVLYPG+RPTV RIRLRLR
Sbjct: 181 FLYKNSSQKVKDVVKCMNSRASKADCVFSGHYTLSDDKIEAAVLYPGMRPTVWRIRLRLR 240

Query: 241 GTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTP 300
           GTTAGANNRMDLLSLVTSG++DNEVNG DEDILGVVEGW++DETHNPDVPAVSHKRGL  
Sbjct: 241 GTTAGANNRMDLLSLVTSGVSDNEVNGPDEDILGVVEGWEEDETHNPDVPAVSHKRGLKA 300

Query: 301 FVFVPFEEV 309
           FVFVPFEEV
Sbjct: 301 FVFVPFEEV 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845164|ref|XP_002890463.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336305|gb|EFH66722.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 287/311 (92%), Gaps = 3/311 (0%)

Query: 1   MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIH 60
           M SD A+TIP+ELES+LRL+TV +F+T+RPWLDLYG++VRPV PFGS SRKP+ D ALIH
Sbjct: 1   MTSD-ALTIPSELESALRLRTVQYFITKRPWLDLYGVHVRPVPPFGSTSRKPHYDPALIH 59

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKIL 120
           RCLPDELLFEVFARM PYDLG+A+CVCRKW+YT+RNPVFWRNACLKAWQ +GV+ENYKIL
Sbjct: 60  RCLPDELLFEVFARMMPYDLGRAACVCRKWRYTVRNPVFWRNACLKAWQTAGVIENYKIL 119

Query: 121 QSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGR 180
           QS+Y+GSWRKMWLLR R+R DGLYVSRNTYIRAG+ EWKITNPVHIVCY+RY+RF+PSGR
Sbjct: 120 QSKYDGSWRKMWLLRSRVRTDGLYVSRNTYIRAGITEWKITNPVHIVCYFRYIRFYPSGR 179

Query: 181 FIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTL--SEEKVEAAVLYPGLRPTVLRIRLR 238
           F+YKNSSQK+KDVAK MNF+A+K+D ++ G YTL  S++K+EAAVLYPG RPTVLRIRLR
Sbjct: 180 FLYKNSSQKLKDVAKYMNFKASKSDSLYRGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLR 239

Query: 239 LRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGL 298
           LRGT  GANNRMDLLSLVTSG+ND E++  +EDILGVVEGW+DDETHNPD+PAVSHKRG+
Sbjct: 240 LRGTAIGANNRMDLLSLVTSGVNDEEISSTEEDILGVVEGWEDDETHNPDIPAVSHKRGM 299

Query: 299 TPFVFVPFEEV 309
           TPFVFVPFEEV
Sbjct: 300 TPFVFVPFEEV 310

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395030|ref|NP_564150.1| F-box protein 7 [Arabidopsis thaliana] gi|75267563|sp|Q9XI00.1|SKI32_ARATH RecName: Full=F-box protein 7; AltName: Full=SKP1-interacting partner 32 gi|5263329|gb|AAD41431.1|AC007727_20 Contains PF|00646 F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and gb|T88189 come from this gene [Arabidopsis thaliana] gi|30102634|gb|AAP21235.1| At1g21760 [Arabidopsis thaliana] gi|110736044|dbj|BAE99994.1| hypothetical protein [Arabidopsis thaliana] gi|332192032|gb|AEE30153.1| F-box protein 7 [Arabidopsis thaliana]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 246/311 (79%), Positives = 287/311 (92%), Gaps = 3/311 (0%)

Query: 1   MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIH 60
           M SD A+TIP+ELES+LRL+TV +F+T+RPWLDLYG++VRPV PFGS SRKP+ D ALIH
Sbjct: 1   MTSD-ALTIPSELESALRLRTVQYFITKRPWLDLYGVHVRPVPPFGSTSRKPHFDPALIH 59

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKIL 120
           RCLPDELLFEVFARM PYDLG+ASCVCRKW+YT+RNP+FWRNACLKAWQ +GV+ENYKIL
Sbjct: 60  RCLPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAGVIENYKIL 119

Query: 121 QSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGR 180
           QS+Y+GSWRKMWLLR R+R DGLYVSRNTYIRAG+AEWKITNPVHIVCYYRY+RF+PSGR
Sbjct: 120 QSKYDGSWRKMWLLRSRVRTDGLYVSRNTYIRAGIAEWKITNPVHIVCYYRYIRFYPSGR 179

Query: 181 FIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTL--SEEKVEAAVLYPGLRPTVLRIRLR 238
           F+YKNSSQK+KDVAK MNF+A+K++ ++ G YTL  S++K+EAAVLYPG RPTVLRIRLR
Sbjct: 180 FLYKNSSQKLKDVAKYMNFKASKSENLYKGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLR 239

Query: 239 LRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGL 298
           LRGT  GANNRMDLLSLVTSG+ND E++  +EDILG+VEGW+DDETHNPD+PAVSHKRG+
Sbjct: 240 LRGTAIGANNRMDLLSLVTSGVNDEEISSTEEDILGLVEGWEDDETHNPDIPAVSHKRGM 299

Query: 299 TPFVFVPFEEV 309
           T FVFVPFEEV
Sbjct: 300 TAFVFVPFEEV 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545378|ref|XP_002513749.1| protein with unknown function [Ricinus communis] gi|223546835|gb|EEF48332.1| protein with unknown function [Ricinus communis]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 219/315 (69%), Positives = 269/315 (85%), Gaps = 5/315 (1%)

Query: 1   MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIH 60
           M SD+A+ +P ELE++L+LKTV +FVTQRPWLDLYG+N+RPVAP+GS SR+   D+ALIH
Sbjct: 1   MTSDYALQVPPELETALQLKTVRYFVTQRPWLDLYGVNIRPVAPYGSASRRQINDSALIH 60

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKIL 120
           R LPDELL EVF RM+PYDLG+A+CVCRKW+YT+RNPVFWR+ACLKAWQL G+VENYKIL
Sbjct: 61  RSLPDELLLEVFLRMNPYDLGRAACVCRKWRYTLRNPVFWRSACLKAWQLCGMVENYKIL 120

Query: 121 QSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGR 180
           QS+YE SWRKMWLLRPR+R DGLYVSRNTYIR GV EW ITNPVH+VCYYRYMRF PSGR
Sbjct: 121 QSKYESSWRKMWLLRPRVRTDGLYVSRNTYIRTGVREWTITNPVHLVCYYRYMRFLPSGR 180

Query: 181 FIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLR 240
           F+YK SS  +K+V K MN+RA+KAD VFTG YTL+++++EAA +YPG+RPT+ ++ LR+R
Sbjct: 181 FLYKTSSHTVKEVVKCMNYRASKADDVFTGRYTLNDDRIEAAFVYPGMRPTMWKVCLRIR 240

Query: 241 GTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTP 300
           GTT GANNR+D+LSLVTS +++N V+G +EDI+GVV+ WQ+DE     +   SHKRGL P
Sbjct: 241 GTTTGANNRLDILSLVTSKVDNNGVSGPEEDIVGVVDDWQEDE-----ISRTSHKRGLAP 295

Query: 301 FVFVPFEEVCDLFYF 315
           F FVPFEEVC L  +
Sbjct: 296 FAFVPFEEVCTLLSY 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2036932	328	FBP7 "AT1G21760" [Arabidopsis	0.913	0.939	0.790	5.5e-141
MGI|MGI:1918788	437	Fbxo9 "f-box protein 9" [Mus m	0.474	0.366	0.362	5.2e-22
UNIPROTKB|Q9UK97	447	FBXO9 "F-box only protein 9" [	0.474	0.357	0.356	5.8e-22
UNIPROTKB|Q3ZBT2	437	FBXO9 "F-box only protein 9" [	0.474	0.366	0.356	1.9e-21
RGD|1310374	435	Fbxo9 "f-box protein 9" [Rattu	0.474	0.367	0.350	2.4e-21
UNIPROTKB|F6Y9J3	431	fbxo9 "F-box only protein 9" [	0.474	0.371	0.350	8.5e-21
ZFIN|ZDB-GENE-030131-4194	421	fbxo9 "F-box protein 9" [Danio	0.486	0.389	0.337	1.8e-19
POMBASE|SPCC1827.08c	361	pof7 "F-box protein Pof7" [Sch	0.525	0.490	0.272	5.3e-13
ASPGD|ASPL0000006907	534	fbx1 [Emericella nidulans (tax	0.163	0.102	0.460	9.3e-07
CGD|CAL0003676	453	orf19.4637 [Candida albicans (	0.178	0.132	0.396	5e-06

TAIR|locus:2036932 FBP7 "AT1G21760" [Arabidopsis thaliana (taxid:3702)]

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 246/311 (79%), Positives = 287/311 (92%)

Query:     1 MASDFAMTIPAELESSLRLKTVHHFVTQRPWLDLYGINVRPVAPFGSVSRKPYVDTALIH 60
             M SD A+TIP+ELES+LRL+TV +F+T+RPWLDLYG++VRPV PFGS SRKP+ D ALIH
Sbjct:     1 MTSD-ALTIPSELESALRLRTVQYFITKRPWLDLYGVHVRPVPPFGSTSRKPHFDPALIH 59

Query:    61 RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKIL 120
             RCLPDELLFEVFARM PYDLG+ASCVCRKW+YT+RNP+FWRNACLKAWQ +GV+ENYKIL
Sbjct:    60 RCLPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAGVIENYKIL 119

Query:   121 QSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGR 180
             QS+Y+GSWRKMWLLR R+R DGLYVSRNTYIRAG+AEWKITNPVHIVCYYRY+RF+PSGR
Sbjct:   120 QSKYDGSWRKMWLLRSRVRTDGLYVSRNTYIRAGIAEWKITNPVHIVCYYRYIRFYPSGR 179

Query:   181 FIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLS--EEKVEAAVLYPGLRPTVLRIRLR 238
             F+YKNSSQK+KDVAK MNF+A+K++ ++ G YTLS  ++K+EAAVLYPG RPTVLRIRLR
Sbjct:   180 FLYKNSSQKLKDVAKYMNFKASKSENLYKGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLR 239

Query:   239 LRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGL 298
             LRGT  GANNRMDLLSLVTSG+ND E++  +EDILG+VEGW+DDETHNPD+PAVSHKRG+
Sbjct:   240 LRGTAIGANNRMDLLSLVTSGVNDEEISSTEEDILGLVEGWEDDETHNPDIPAVSHKRGM 299

Query:   299 TPFVFVPFEEV 309
             T FVFVPFEEV
Sbjct:   300 TAFVFVPFEEV 310

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006417 "regulation of translation" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0090406 "pollen tube" evidence=IDA

MGI|MGI:1918788 Fbxo9 "f-box protein 9" [Mus musculus (taxid:10090)]

 Score = 260 (96.6 bits), Expect = 5.2e-22, P = 5.2e-22
 Identities = 63/174 (36%), Positives = 92/174 (52%)

Query:    51 KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
             +P ++T+  H   LP E+L  +F  +   DL      + S VCR +    R+P  WR AC
Sbjct:   168 QPELETSQTHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLAC 227

Query:   105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
             LK W  S +    K++   Y  SWR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct:   228 LKVWGRSCM----KLVP--Y-ASWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 280

Query:   164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
              H V YYRYMRFFP G  +   + ++   +   +  R  + D +  GHY LS++
Sbjct:   281 WHQVEYYRYMRFFPDGHVMMLTTPEEPPSIVPRLRTRNTRTDAILLGHYRLSQD 334

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0032006 "regulation of TOR signaling cascade" evidence=ISO

UNIPROTKB|Q9UK97 FBXO9 "F-box only protein 9" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 5.8e-22, P = 5.8e-22
 Identities = 62/174 (35%), Positives = 94/174 (54%)

Query:    51 KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
             +P ++++ IH   LP E+L  +F  +   DL      + S VCR +    R+P  WR AC
Sbjct:   178 QPELESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLAC 237

Query:   105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
             LK W  S +    K++   Y  SWR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct:   238 LKVWGRSCI----KLVP--YT-SWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 290

Query:   164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
              H V YYRY+RFFP G  +   + ++ + +   +  R  + D +  GHY LS++
Sbjct:   291 WHQVEYYRYIRFFPDGHVMMLTTPEEPQSIVPRLRTRNTRTDAILLGHYRLSQD 344

GO:0004842 "ubiquitin-protein ligase activity" evidence=NAS

GO:0000151 "ubiquitin ligase complex" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=IDA;NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0032006 "regulation of TOR signaling cascade" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q3ZBT2 FBXO9 "F-box only protein 9" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 62/174 (35%), Positives = 93/174 (53%)

Query:    51 KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
             +P ++++  H   LP E+L  VF  +   DL      + S VCR +    R+P  WR AC
Sbjct:   168 QPELESSQTHISALPMEVLMYVFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLAC 227

Query:   105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
             LK W  S +    K++   Y  SWR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct:   228 LKVWGRSCI----KLVP--YT-SWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 280

Query:   164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
              H V YYRY+RFFP G  +   + ++ + +   +  R  + D +  GHY LS++
Sbjct:   281 WHQVEYYRYVRFFPDGHVMMLTTPEEPQSIVPRLRTRNTRTDAILLGHYRLSQD 334

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0032006 "regulation of TOR signaling cascade" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

RGD|1310374 Fbxo9 "f-box protein 9" [Rattus norvegicus (taxid:10116)]

 Score = 254 (94.5 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 61/174 (35%), Positives = 91/174 (52%)

Query:    51 KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
             +P ++T+  H   LP E+L  +F  +   DL      + S VCR +    R+P  WR AC
Sbjct:   166 QPELETSQTHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLAC 225

Query:   105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
             LK W  S +    K++      SWR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct:   226 LKVWGRSCM----KLVPF---SSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 278

Query:   164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
              H V YYRY+RFFP G  +   + ++   +   +  R  + D +  GHY LS++
Sbjct:   279 WHQVEYYRYIRFFPDGHVMMLTTPEEPPSIVPRLRTRNTRTDAILLGHYRLSQD 332

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0016567 "protein ubiquitination" evidence=IEA;ISO;ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0032006 "regulation of TOR signaling cascade" evidence=ISO;ISS

UNIPROTKB|F6Y9J3 fbxo9 "F-box only protein 9" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 249 (92.7 bits), Expect = 8.5e-21, P = 8.5e-21
 Identities = 61/174 (35%), Positives = 91/174 (52%)

Query:    51 KPYVDTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNAC 104
             +P +D    H   LP E+L  +F  +   DL      + S VC+ +    R+P  WR AC
Sbjct:   161 QPDIDVTQTHISVLPMEVLMYIFRWVVSSDLDLRALEQLSLVCKGFYICARDPEIWRLAC 220

Query:   105 LKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNP 163
             LK W  + V    KI+   Y  +WR+M+L RPR+R DG+Y+S+ TYIR G          
Sbjct:   221 LKVWGRNCV----KIVP--YT-TWRQMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRA 273

Query:   164 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217
              H V YYRY+RFFP G  +   + +  + +   +  + A+ D +  GHY LS++
Sbjct:   274 WHQVEYYRYLRFFPDGHVMMLTTPEDPQTIVPRLRTKNARTDAMLLGHYRLSQD 327

GO:0005737 "cytoplasm" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0032006 "regulation of TOR signaling cascade" evidence=ISS

ZFIN|ZDB-GENE-030131-4194 fbxo9 "F-box protein 9" [Danio rerio (taxid:7955)]

 Score = 241 (89.9 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 60/178 (33%), Positives = 92/178 (51%)

Query:    55 DTALIH-RCLPDELLFEVFARMSPYDLG-----KASCVCRKWKYTIRNPVFWRNACLKAW 108
             +T+ +H   LP E+L  +F  +   DL      + S VCR +    R+P  WR+ACL+ W
Sbjct:   155 ETSQVHISALPFEVLMYIFRWVVSCDLDLRALEQLSLVCRGFYICARDPEIWRSACLRVW 214

Query:   109 QLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNPVHIV 167
               S      K+L   Y  SWR+M+L RPR+R DG+Y+S+ +YIR G           H V
Sbjct:   215 GRSCT----KMLP--YS-SWREMFLERPRVRFDGVYISKTSYIRQGEESLDGFYRAWHQV 267

Query:   168 CYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLY 225
              YYRY+RFFP G+ +   + +        +  + ++ D +  GHY LS++      +Y
Sbjct:   268 EYYRYLRFFPDGQVMMLTTPEDPLVTVPRLRSKNSRMDSIMFGHYRLSQDTDNQTKVY 325

GO:0032006 "regulation of TOR signaling cascade" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

POMBASE|SPCC1827.08c pof7 "F-box protein Pof7" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 193 (73.0 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 55/202 (27%), Positives = 96/202 (47%)

Query:    63 LPDELLFEVFARM--SPYDLGKASCV---CRKWKYTIRNPVFWRNACL-----KAWQLSG 112
             LPDE+L  +        +DL   S +   C+ +   +R    +R+ C      K WQ S 
Sbjct:   115 LPDEVLLVILENCIRDLHDLRYLSSIALTCKHFAKALRADSLYRSFCYCSCEQKEWQQS- 173

Query:   113 VVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRY 172
             +    + L  +Y+ SW+ ++L +PR R DG Y+S   Y R G ++     P+H++ YYRY
Sbjct:   174 IKSIEEELVEKYQQSWKTLFLKKPRSRFDGCYISVCRYFRPGTSDTSWNQPIHLITYYRY 233

Query:   173 MRFFPSGRFIYKNSSQKIKDVAK---IMN---FRAAKADCVF-------TGHYTLSEEKV 219
             +R +P+   I   SS +  DV +   + N   F    +  +F       TG ++++    
Sbjct:   234 LRLYPNSTCIVYQSSNEPNDVVRNFSVQNTSLFSPMSSSPMFSNGNVALTGSWSMTPSG- 292

Query:   220 EAAVLYPGLRPTVLRIRLRLRG 241
             E  ++YP  +      +L++RG
Sbjct:   293 EMLIVYPASQTYTYVQKLQVRG 314

GO:0000151 "ubiquitin ligase complex" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISM

GO:0030674 "protein binding, bridging" evidence=ISM

ASPGD|ASPL0000006907 fbx1 [Emericella nidulans (taxid:162425)]

 Score = 142 (55.0 bits), Expect = 9.3e-07, P = 9.3e-07
 Identities = 29/63 (46%), Positives = 38/63 (60%)

Query:   127 SWRKMWLLRPRIRIDGLYVSRNTYIRAGVAE------WKITNPVHIVCYYRYMRFFPSGR 180
             SW +++   PRIR  G+Y+S   Y RAG A       W   +P+HIV YYRY+RF+P G 
Sbjct:   301 SWSEVFHSFPRIRFTGVYISTVNYTRAGAASAYSNISWN--SPIHIVTYYRYLRFYPDGT 358

Query:   181 FIY 183
              IY
Sbjct:   359 VIY 361

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0071406 "cellular response to methylmercury" evidence=IEA

CGD|CAL0003676 orf19.4637 [Candida albicans (taxid:5476)]

 Score = 110 (43.8 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query:   123 RYEGSWRKMWLLRPRIRIDGLYVSR-NTYIRAGVAEWKI--TNPVHIVCYYRYMRFFPSG 179
             +Y  SW+ M   RP I+  G Y+S  N Y   G AE+    +NPV  + YYRY+RF+  G
Sbjct:   248 QYNDSWKFMLHNRPFIKFLGCYISVVNYYSEGGKAEFSNAWSNPVKTITYYRYLRFYRDG 307

Query:   180 RFI 182
               +
Sbjct:   308 TVV 310

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0071406 "cellular response to methylmercury" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XI00	SKI32_ARATH	No assigned EC number	0.7909	0.9139	0.9390	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam12937	47	pfam12937, F-box-like, F-box-like	4e-11
pfam00646	48	pfam00646, F-box, F-box domain	3e-10
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-09

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 63  LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 106
           LPDE+L ++F+ + P DL + + VCR+W+    +   WR  CL+
Sbjct: 4   LPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCLR 47

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACL 105
            LPD+LL E+ +R+ P DL + S V ++W+  + +   W+   L
Sbjct: 5   DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 51.7 bits (125), Expect = 3e-09
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 63  LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRN 102
           LPDE+L E+ +++ P DL +   V RKW+  I +  FW  
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFK 40

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG2997	366	consensus F-box protein FBX9 [General function pre	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.28
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.7
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.58
KOG3926	332	consensus F-box proteins [Amino acid transport and	97.88
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.79
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.7
PF06881	109	Elongin_A: RNA polymerase II transcription factor	96.38
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	95.42
KOG4341	483	consensus F-box protein containing LRR [General fu	95.21
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	94.46
PF13013	109	F-box-like_2: F-box-like domain	87.78
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	86.29

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=100.00  E-value=1.5e-64  Score=481.94  Aligned_cols=286  Identities=34%  Similarity=0.542  Sum_probs=259.6

Q ss_pred             cccccccchhhhc-cccccceecccccccccCCccccCCC---CCCCCC-CCCCC--cchhc-ccCCHHHHHHHcc----
Q 019659            6 AMTIPAELESSLR-LKTVHHFVTQRPWLDLYGINVRPVAP---FGSVSR-KPYVD--TALIH-RCLPDELLFEVFA----   73 (337)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~r~wL~~~gl~i~~~~p---~~~~~~-~~~~~--pc~iL-~~LPdEILl~Ils----   73 (337)
                      |++|+|++|+.-+ +++++++.++++||++.+-..+++++   |+.... ++.++  ||+++ +.||+|||+.||.    
T Consensus        45 AlqI~~diEs~~r~l~~~~~~~~k~~~l~l~~D~~~~~~~~s~f~~tLt~qe~v~~qp~~~~~~~LPdEvLm~I~~~vv~  124 (366)
T KOG2997|consen   45 ALQIVPDIESKYRYLRSPQGDGVKNSYLELNDDASKMADLLSYFQQTLTFQESVLCQPELISISVLPDEVLMRIFRWVVS  124 (366)
T ss_pred             hhcCCchHHHHHHHHhhhhhcccCcchhhccccchhhcCchhccccccccccccccchhhhhhhhCCHHHHHHHHHHHHh
Confidence            8999999999988 99999999999999999999999998   766655 55555  99987 8999999999995    


Q ss_pred             -CCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhCCccccCcEEeeccceee
Q 019659           74 -RMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIR  152 (337)
Q Consensus        74 -~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~RPrIRf~G~YIS~v~YiR  152 (337)
                       .||.+||.++|+|||+|+.+|+++++||..|.+.|+......+.++.++.+.++||+||++|||+||||||||+++|+|
T Consensus       125 ~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~RpRvrFdG~YIS~~tYiR  204 (366)
T KOG2997|consen  125 SLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLERPRVRFDGVYISKTTYIR  204 (366)
T ss_pred             hhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhhCcceeecceEEEEEeEee
Confidence             5789999999999999999999999999999999998776666666667888999999999999999999999999999


Q ss_pred             CCcccc-cccCceeEEEeeeeeeEcCCCceEEeecCccccceeecccccccCCCceEEEEEEEeCCEEEEEEecCC----
Q 019659          153 AGVAEW-KITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPG----  227 (337)
Q Consensus       153 ~G~~~~-~~~~Pvh~VtYYRYLRF~pDGt~l~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~~~g----  227 (337)
                      +|++++ +|++|||+||||||+||||||+||+++|++||++||++|+.++.+...++.|+|+++++.|++++..++    
T Consensus       205 ~G~~~~~~~~~PVHlV~YYRYiRFyP~G~~l~~~SsdEP~dvVk~~s~~Nt~~~s~~~g~y~ls~~dv~~al~~~~~~~p  284 (366)
T KOG2997|consen  205 QGENSLDSFYRPVHLVEYYRYIRFYPDGHVLMLTSSDEPQDVVKRLSTRNTRRDSILLGHYRLSQSDVFAALTKSKERTP  284 (366)
T ss_pred             cCchhhhhhcCcceeeEEEEEEEecCCCcEEEEeCCcChHHHHHhhhhccCcchhhhcccccccCCchhhhhccCcccCc
Confidence            999999 999999999999999999999999999999999999999999988899999999999988888776321    


Q ss_pred             --------------CcceEEEEEEEEecCCCCCcceeEEeEeEEecCCCCCCCCCCCcccccccccccCCCCCCCCCccc
Q 019659          228 --------------LRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVS  293 (337)
Q Consensus       228 --------------~~~~~f~~~L~lr~~~~g~~nkL~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (337)
                                    ...++|.++|+|++++..+.|+|+|.++.                   +++|+++|++.++.|++.
T Consensus       285 s~~~~~r~~~~~v~~~s~tfl~~l~l~~~g~rr~~~L~W~~~~-------------------~~~~~d~et~~se~~l~~  345 (366)
T KOG2997|consen  285 SDYKYRRGRRVPVQEASQTFLVELQLCGSGHRRFNKLKWIHHS-------------------ITYKSDKETAVSEFPLTK  345 (366)
T ss_pred             hhhhhhcccccccccccceeEEEEEEecccchhhhhheeeeee-------------------eeEeecccccccCCcccc
Confidence                          12367899999999999999999998875                   247888899999999999


Q ss_pred             ccCCCCceeeeecccccc
Q 019659          294 HKRGLTPFVFVPFEEVCD  311 (337)
Q Consensus       294 ~~rg~~~~~fv~~e~~~~  311 (337)
                      |++| .-|++||+++++.
T Consensus       346 ~k~~-~~FsrV~Sy~~d~  362 (366)
T KOG2997|consen  346 MKTP-LFFSRVKSYTADS  362 (366)
T ss_pred             ccCc-ceEEEeeeeeccc
Confidence            9999 8899999998863

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.28  E-value=1.8e-12  Score=91.75  Aligned_cols=46  Identities=41%  Similarity=0.956  Sum_probs=40.8

Q ss_pred             ccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHh
Q 019659           61 RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK  106 (337)
Q Consensus        61 ~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~  106 (337)
                      ..||+||+.+||++|++.|+.++++|||+|+.++.++.+|+++|.+
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r   47 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR   47 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence            5899999999999999999999999999999999999999999864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.70  E-value=5.6e-09  Score=73.47  Aligned_cols=46  Identities=30%  Similarity=0.650  Sum_probs=40.4

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHH
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACL  105 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~  105 (337)
                      +..||+|++.+||++|++.|+.++++|||+|+.++.+..+|+..|+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r   48 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR   48 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence            5789999999999999999999999999999999999999999874

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.58  E-value=2.5e-08  Score=67.16  Aligned_cols=40  Identities=38%  Similarity=0.757  Sum_probs=38.6

Q ss_pred             CCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHH
Q 019659           63 LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRN  102 (337)
Q Consensus        63 LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~  102 (337)
                      ||+|++.+|+++|++.|+.++++|||+|+.++.++.+|+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=97.88  E-value=8.3e-06  Score=78.08  Aligned_cols=78  Identities=17%  Similarity=0.322  Sum_probs=62.5

Q ss_pred             chhcccCCHHHHHHHccCC-CcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 019659           57 ALIHRCLPDELLFEVFARM-SPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR  135 (337)
Q Consensus        57 c~iL~~LPdEILl~Ils~L-d~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~R  135 (337)
                      .+.+..||.|+++.|+..| |..||..+|++--.++.++++..|||.+|+..|+.-.+.. ..........+||+||..-
T Consensus       199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~-~l~l~k~~q~dWkqmyf~L  277 (332)
T KOG3926|consen  199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHT-ILILSKKGQKDWKQMYFQL  277 (332)
T ss_pred             CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hhhhccccchhHHHHHHHH
Confidence            3457899999999999887 7999999999999999999999999999999886533322 1223344447899999864

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=6.6e-06  Score=80.41  Aligned_cols=52  Identities=25%  Similarity=0.520  Sum_probs=46.8

Q ss_pred             CcchhcccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHh
Q 019659           55 DTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK  106 (337)
Q Consensus        55 ~pc~iL~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~  106 (337)
                      .|......|||||++.||+.|.-.+|.+++.|||+|+.++.++.+|..+-+.
T Consensus        93 npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~  144 (419)
T KOG2120|consen   93 NPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLT  144 (419)
T ss_pred             CCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccC
Confidence            4444468999999999999999999999999999999999999999987654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.70  E-value=0.00099  Score=66.15  Aligned_cols=48  Identities=19%  Similarity=0.546  Sum_probs=45.2

Q ss_pred             cccCC----HHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhh
Q 019659           60 HRCLP----DELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA  107 (337)
Q Consensus        60 L~~LP----dEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~  107 (337)
                      .+.||    ++|...||+|||..||..|-+|||+|+.+..+..+||.+..+.
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~  126 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERM  126 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHh
Confidence            47899    9999999999999999999999999999999999999998763

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=96.38  E-value=0.0029  Score=52.69  Aligned_cols=69  Identities=14%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR  135 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~R  135 (337)
                      +..+|.+++..||..++++.|.++-..|..+.  -.++.||+.+|.+.|+.....   .  .+....+||++|...
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~---~--~~~~~~~Wr~~Y~~~   72 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKR---Q--KPKEPESWRELYEKL   72 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhc---c--cccccchHHHHHHHH
Confidence            35789999999999999999999999885332  346799999999999862211   0  122236999999863

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=95.42  E-value=0.0056  Score=64.24  Aligned_cols=48  Identities=25%  Similarity=0.533  Sum_probs=45.3

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhh
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA  107 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~  107 (337)
                      +..||.|+..+|+.+||++++.++++||+.|+.++.++..|.+.|...
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~  155 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCREL  155 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhh
Confidence            589999999999999999999999999999999999999999888775

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.21  E-value=0.0063  Score=61.93  Aligned_cols=51  Identities=29%  Similarity=0.545  Sum_probs=47.5

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccC
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL  110 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~  110 (337)
                      --.||.|++++||++||..++.+++++|+.|+.++.|-.-|..+-+.+++.
T Consensus        72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r  122 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR  122 (483)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh
Confidence            357999999999999999999999999999999999999999998887764

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=94.46  E-value=0.006  Score=60.31  Aligned_cols=55  Identities=25%  Similarity=0.281  Sum_probs=50.4

Q ss_pred             hhcccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCc
Q 019659           58 LIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSG  112 (337)
Q Consensus        58 ~iL~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~  112 (337)
                      +.+..+|+.+++.|++++..+++.++|+|++++..+...+.+|.+.|.+.|....
T Consensus         6 ~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~is~   60 (386)
T KOG4408|consen    6 LGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLLISE   60 (386)
T ss_pred             cchhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccccccc
Confidence            3468899999999999999999999999999999999999999999999887644

>PF13013 F-box-like_2: F-box-like domain

Probab=87.78  E-value=0.42  Score=40.31  Aligned_cols=34  Identities=29%  Similarity=0.235  Sum_probs=29.2

Q ss_pred             hcccCCHHHHHHHccCCCcccchhhhhccHHHHH
Q 019659           59 IHRCLPDELLFEVFARMSPYDLGKASCVCRKWKY   92 (337)
Q Consensus        59 iL~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~   92 (337)
                      .+.+||+||+..|+.+.+..++..+..+|+..+.
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~   54 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRS   54 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999985443

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=86.29  E-value=0.44  Score=48.16  Aligned_cols=37  Identities=30%  Similarity=0.688  Sum_probs=32.6

Q ss_pred             cccCCHHHHHHHccCC-CcccchhhhhccHHHHHhcCC
Q 019659           60 HRCLPDELLFEVFARM-SPYDLGKASCVCRKWKYTIRN   96 (337)
Q Consensus        60 L~~LPdEILl~Ils~L-d~~sL~~ls~VCr~f~~L~~d   96 (337)
                      .+.||+|+|..|...| ...|+.+++.||+.|+..+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            3689999999999999 567999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-11
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	3e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-09
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-04

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 62.6 bits (151), Expect = 2e-11
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 11/125 (8%)

Query: 40  RPVAPFGSVSRKPYVDTALIHRCLPDELLFEVFARMSPYDLGKA-SCVCRKWKYTIRNPV 98
                      +   +       LP+ LL  V A +   +L +A   VC +WK  +    
Sbjct: 31  AEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAP 90

Query: 99  FWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEW 158
            W   C +   +       +         W++ + L  R       + RN      +  W
Sbjct: 91  LWLLKCQQEGLVP------EGSADEERDHWQQFYFLSKR----RRNLLRNPCGEEDLEGW 140

Query: 159 KITNP 163
                
Sbjct: 141 SDVEH 145

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRN 102
            LPDELL  +F+ +   +L K S VC++W     +   W+ 
Sbjct: 11  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLS 111
            LPDELL  +F+ +   +L K S VC++W     +   W+   L    L 
Sbjct: 11  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH 60

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYK 118
            LP ++   + + +SP+DL +       W  T+R+P+ WR   L+       V+   
Sbjct: 7   RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKS 63

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 63 LPDELLFEVFARM-SPYDLGKASCVCRKW 90
            D+++ +V   +  P D   AS VCR+W
Sbjct: 16 TVDDVIEQVMTYITDPKDRDSASLVCRRW 44

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 62 CLPDELLFEVFARM-SPYDLGKASCVCRKW 90
            P+E+L  VF+ +    D    S VC+ W
Sbjct: 8  SFPEEVLEHVFSFIQLDKDRNSVSLVCKSW 37

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 62  CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLS 111
            LP EL   V + + P DL +A+  CR W+    + + WR  C +     
Sbjct: 21  LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDE 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.1
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.75
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.72
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.63
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.69
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	96.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.93

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.10  E-value=3.5e-11  Score=85.80  Aligned_cols=44  Identities=32%  Similarity=0.655  Sum_probs=40.0

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHH
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNA  103 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~l  103 (337)
                      +..||+||+.+||++|++.|+.++++|||+|+.++.++.+||.+
T Consensus         9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            58999999999999999999999999999999999999999975

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.05  E-value=7.1e-11  Score=113.05  Aligned_cols=75  Identities=23%  Similarity=0.476  Sum_probs=60.6

Q ss_pred             hcccCCHHHHHHHccCCCcccch-hhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhCCc
Q 019659           59 IHRCLPDELLFEVFARMSPYDLG-KASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPR  137 (337)
Q Consensus        59 iL~~LPdEILl~Ils~Ld~~sL~-~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~RPr  137 (337)
                      .+..||+|||.+||++|++.+|+ +|++|||+|+.|+.++.+||.+|.+.+-.....      ......+||++|..+++
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~------~~~~~~~Wk~~y~~~~~  123 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS------ADEERDHWQQFYFLSKR  123 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----------CCSCHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccc------cCCCCCChhhhheheec
Confidence            35899999999999999999999 999999999999999999999999983221111      11235789999999875


Q ss_pred             cc
Q 019659          138 IR  139 (337)
Q Consensus       138 IR  139 (337)
                      -|
T Consensus       124 gR  125 (297)
T 2e31_A          124 RR  125 (297)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.75  E-value=2e-09  Score=103.24  Aligned_cols=48  Identities=27%  Similarity=0.562  Sum_probs=46.6

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhh
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA  107 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~  107 (337)
                      ++.||+||+++||+||+|+||+++++|||+|+.++.|+.|||.+|.+.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD   52 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence            589999999999999999999999999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.72  E-value=3.8e-09  Score=100.82  Aligned_cols=77  Identities=23%  Similarity=0.471  Sum_probs=57.3

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcch-hhhh-hhccCCCccHHHHHHhCC
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVV-ENYK-ILQSRYEGSWRKMWLLRP  136 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~-~~~~-L~~~~~~~sWR~Mf~~RP  136 (337)
                      +..||+|++.+||++|++.||.++++|||+|+.++.++.+||.+|++........ .... ........+||..|..+.
T Consensus        19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~   97 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH   97 (445)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred             hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence            6899999999999999999999999999999999999999999998763221110 0000 001112367999987654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.63  E-value=7.4e-09  Score=98.94  Aligned_cols=50  Identities=16%  Similarity=0.424  Sum_probs=47.5

Q ss_pred             cccCCHH----HHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhcc
Q 019659           60 HRCLPDE----LLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQ  109 (337)
Q Consensus        60 L~~LPdE----ILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~  109 (337)
                      +..||+|    |+++||++||+.||.++++|||+|+.++.++.+||.+|.+.+.
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~   64 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence            5889999    9999999999999999999999999999999999999998753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.61  E-value=1.1e-08  Score=97.59  Aligned_cols=49  Identities=20%  Similarity=0.413  Sum_probs=46.3

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCC-CchhHHHHHhhc
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRN-PVFWRNACLKAW  108 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~d-d~LWR~lC~~~w  108 (337)
                      +..||+||+++||+|||+.+|.++++|||+|+.++.+ +.+||.+|++..
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~   64 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN   64 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence            5899999999999999999999999999999999998 799999998764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.79  E-value=6.8e-06  Score=75.88  Aligned_cols=47  Identities=32%  Similarity=0.620  Sum_probs=43.0

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHh
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK  106 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~  106 (337)
                      ++.||+|++.+||++|+..|+.++++|||+|+.++.++.+|+.+-..
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~   55 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLT   55 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECT
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccc
Confidence            58999999999999999999999999999999999889999876544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.69  E-value=0.00056  Score=67.72  Aligned_cols=34  Identities=29%  Similarity=0.528  Sum_probs=29.4

Q ss_pred             cccCCHHHHHHHccCCC-cccchhhhhccHHHHHh
Q 019659           60 HRCLPDELLFEVFARMS-PYDLGKASCVCRKWKYT   93 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld-~~sL~~ls~VCr~f~~L   93 (337)
                      ++.||+|||.+||++|+ .+|+.++++|||+|+.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            57899999999999999 99999999999999988

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=96.08  E-value=0.0015  Score=52.67  Aligned_cols=62  Identities=21%  Similarity=0.375  Sum_probs=35.4

Q ss_pred             cCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHh
Q 019659           62 CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL  134 (337)
Q Consensus        62 ~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~  134 (337)
                      ..|.++|.-||...+|..|.++-.-|-  ..+-.++.||+.+|.+.|+...         +....+||+||..
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP--~L~~dTdeLWk~~c~rdF~~~~---------p~e~esWRelY~r   73 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNH--VLIEETDQLWKVHCHRDFKEER---------PEEYESWREMYLR   73 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC---------CCSSSCHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCc--ccchhhHHHHHHHHHhHCcccC---------CCCCCCHHHHHHH
Confidence            468889999999899999988888886  3345667999999999997532         1234799999975

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.93  E-value=0.0019  Score=63.89  Aligned_cols=33  Identities=30%  Similarity=0.544  Sum_probs=31.3

Q ss_pred             ccCCHHHHHHHccCC-CcccchhhhhccHHHHHh
Q 019659           61 RCLPDELLFEVFARM-SPYDLGKASCVCRKWKYT   93 (337)
Q Consensus        61 ~~LPdEILl~Ils~L-d~~sL~~ls~VCr~f~~L   93 (337)
                      ..||+|+|.+||++| +.+|+.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            479999999999999 899999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-13
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	7e-10
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-08
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	3e-08

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 2e-13
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENY--K 118
             LP EL   V + + P DL +A+  CR W+    + + WR  C +      +       
Sbjct: 20  SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKV 79

Query: 119 ILQSRYEGSWRKMWLLRPRIR 139
           I        W+  ++ + RI 
Sbjct: 80  IKPGFIHSPWKSAYIRQHRID 100

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (124), Expect = 7e-10
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 63  LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFW 100
           LPDELL  +F+ +   +L K S VC++W     +   W
Sbjct: 4   LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 61  RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRN-PVFWRNACLK-AWQLSGVVENY- 117
             LP E+  ++F  +   D+  +  V + W   IR     W+   +   +       +  
Sbjct: 7   TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLN 66

Query: 118 -----KILQSRYEGSWRKMWLLRPRIR 139
                K  +   +   R  +L    I 
Sbjct: 67  LKLSQKYPKLSQQDRLRLSFLENIFIL 93

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 63  LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQS 122
             D +   + + +    L  A  VC++W     + + W+    +  +   +         
Sbjct: 18  GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGL----- 72

Query: 123 RYEGSWRKMWLLRPRIR 139
             E      +L + +  
Sbjct: 73  -AERRGWGQYLFKNKPP 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.55
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.19
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.13

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.5e-16  Score=122.88  Aligned_cols=82  Identities=23%  Similarity=0.446  Sum_probs=64.3

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchh--hhhhhccCCCccHHHHHHhCCc
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVE--NYKILQSRYEGSWRKMWLLRPR  137 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~--~~~L~~~~~~~sWR~Mf~~RPr  137 (337)
                      ++.||+||+.+||++||+.||+++++|||+|+.++.++.+||.+|.+.|.......  ...........+||++|+++.+
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~~~   98 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR   98 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999998764322110  0111112334689999999887


Q ss_pred             cccC
Q 019659          138 IRID  141 (337)
Q Consensus       138 IRf~  141 (337)
                      ++.|
T Consensus        99 l~~n  102 (102)
T d2ovrb1          99 IDTN  102 (102)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7653

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.2e-12  Score=87.05  Aligned_cols=40  Identities=35%  Similarity=0.720  Sum_probs=38.9

Q ss_pred             ccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchh
Q 019659           61 RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFW  100 (337)
Q Consensus        61 ~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LW  100 (337)
                      +.||+||+.+||++|++.|+.++++|||+|+.++.++.+|
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5799999999999999999999999999999999999998

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.2e-13  Score=106.95  Aligned_cols=51  Identities=18%  Similarity=0.440  Sum_probs=46.6

Q ss_pred             cccCC----HHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccC
Q 019659           60 HRCLP----DELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL  110 (337)
Q Consensus        60 L~~LP----dEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~  110 (337)
                      +..||    +||+++||+|||+.||+++++|||+|+.++.++.+||.+|.+.+..
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~~   65 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT   65 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhccc
Confidence            46666    6999999999999999999999999999999999999999987644

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=8.7e-12  Score=98.19  Aligned_cols=49  Identities=18%  Similarity=0.400  Sum_probs=45.1

Q ss_pred             cccCCHHHHHHHccCCCcccchhhhhccHHHHHhc-CCCchhHHHHHhhc
Q 019659           60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTI-RNPVFWRNACLKAW  108 (337)
Q Consensus        60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~-~dd~LWR~lC~~~w  108 (337)
                      ++.||+||+.+||++||+.||+++++|||+|+.++ .++.+||.+|.+.+
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~~   55 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN   55 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHTT
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence            58999999999999999999999999999999887 56799999998764