Citrus Sinensis ID: 019661

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK
ccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHcHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHcHHHHHHHHHHcEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEccccEEEEEEEccEEEEccccccEEEEEcHHHHHHcccccccccccEEEEcccccccHHHHHHHHHHHHHcEEccccccccEEEEEcccccccccccccccEEEEEccc
ccHHEEEccccccEEEccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccHHHcccccccEEEEEEEcccccccccccccHHHHHHHcccccHHHHHHHHHcccEEEEEccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHccccEEEEcccccEEEEEccccEEEEccccccEEEEEEEEEEcccccccHccccccEEEcccccccHHHHHHHHHHHHHHcEccccccccEEEEEHHHHHHcccccccccEEEEEEcc
madhfieikipqqrnynninnscpfpsvlspnpattATVSRLAEKVRTQKPFLDSLLLKAGSVlfrgfddvktaKEFNDVVEafgyeelpyvggaaprtnivgrvftanesppdqkipfhhemaqvpefpsklfffcevepgsggetpIVLSHIVYERMKHKYPDFVEQLEQHGLIYTrvlgekddpsspigrgwkstfltedksiaeeSSIESFNRAARLGMKlewmedggvktimgpipaikydesrqRKIWFNSMVAAYtgwkddrndpvkavtfgngkplpadIVHDCLNIleeesvaipwqkgdvlLIDNWAVLHarrsfnpprRILASLCK
MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRvlgekddpsspigrgwkstfltedksiaeessiesfNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAytgwkddrndPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHarrsfnpprrilaslck
MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK
*****IEIKI*****YNNINNSC******************LAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTA**********FHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLG*********************************NRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSF************
**DHFIEIKIPQQ*****INNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK
MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK
*ADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q9LIG0330 Clavaminate synthase-like yes no 0.952 0.972 0.721 1e-143
>sp|Q9LIG0|Y3136_ARATH Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1 Back     alignment and function desciption
 Score =  507 bits (1306), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/337 (72%), Positives = 285/337 (84%), Gaps = 16/337 (4%)

Query: 5   FIEIKIPQQRNYNNINNSCPFPSVLSPNPAT----TATVSRLAEKVRTQKPFLDSLLLKA 60
            +E  IPQQ++Y     S PFP+V+SP  A+      ++    + ++TQK +LDSLL ++
Sbjct: 6   LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 61

Query: 61  GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
           G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct: 62  GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 120

Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
           HEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct: 121 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 180

Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPI 240
           LGE DDPSSPIGRGWKSTFLT DK++AE+       RA  LGMKLEW EDGG KT+MGPI
Sbjct: 181 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQ-------RAVDLGMKLEWTEDGGAKTVMGPI 233

Query: 241 PAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEES 300
           PAIKYDESR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE 
Sbjct: 234 PAIKYDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEEC 293

Query: 301 VAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK 337
           VA+PWQ+GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct: 294 VAVPWQRGDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
224054408327 predicted protein [Populus trichocarpa] 0.970 1.0 0.807 1e-159
255549820322 conserved hypothetical protein [Ricinus 0.955 1.0 0.759 1e-149
359806448323 uncharacterized protein LOC100797326 [Gl 0.958 1.0 0.738 1e-145
225442460325 PREDICTED: clavaminate synthase-like pro 0.961 0.996 0.739 1e-143
297743187355 unnamed protein product [Vitis vinifera] 0.961 0.912 0.739 1e-143
15232542330 clavaminate synthase-like protein [Arabi 0.952 0.972 0.721 1e-141
297830838330 predicted protein [Arabidopsis lyrata su 0.964 0.984 0.713 1e-140
449447823324 PREDICTED: clavaminate synthase-like pro 0.952 0.990 0.731 1e-137
357454785325 Clavaminate synthase-like protein [Medic 0.952 0.987 0.682 1e-135
195605474325 syringomycin biosynthesis enzyme [Zea ma 0.961 0.996 0.677 1e-131
>gi|224054408|ref|XP_002298245.1| predicted protein [Populus trichocarpa] gi|222845503|gb|EEE83050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/337 (80%), Positives = 303/337 (89%), Gaps = 10/337 (2%)

Query: 1   MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKA 60
           M+  F EI+I  Q++Y+NI  S PFPSVLSPNP +++T+S   + +  QKPFLDSLLLK 
Sbjct: 1   MSSSFKEIQIQHQKHYSNIP-SFPFPSVLSPNPFSSSTLSFFTDSIIAQKPFLDSLLLKT 59

Query: 61  GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
           G++LFRGFD V TAK+FNDVVEAFG+EELPYVGGAAPRTN+VGRVFTANESPPDQKIPFH
Sbjct: 60  GAILFRGFD-VNTAKDFNDVVEAFGFEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFH 118

Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
           HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSH+VYERMK +YPDFVE++E+HGLIYTRV
Sbjct: 119 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHVVYERMKERYPDFVEKIEEHGLIYTRV 178

Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPI 240
           LGE+DDPSSPIGRGWKSTFLT DKS+AE+       RAA+LGM LEW ED GVKTIMGPI
Sbjct: 179 LGEEDDPSSPIGRGWKSTFLTNDKSVAEQ-------RAAKLGMTLEWFED-GVKTIMGPI 230

Query: 241 PAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEES 300
           PAIKYD+SR RKIWFNSMVAAYTGWKD RNDPVKAVTFG+G+PLP DI+HDCL ILEEES
Sbjct: 231 PAIKYDKSRNRKIWFNSMVAAYTGWKDARNDPVKAVTFGDGQPLPGDIIHDCLKILEEES 290

Query: 301 VAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK 337
           +AIPWQKGDVLLIDNWAVLHARRSFNPPRR+LASLCK
Sbjct: 291 LAIPWQKGDVLLIDNWAVLHARRSFNPPRRVLASLCK 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549820|ref|XP_002515961.1| conserved hypothetical protein [Ricinus communis] gi|223544866|gb|EEF46381.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359806448|ref|NP_001240991.1| uncharacterized protein LOC100797326 [Glycine max] gi|255635574|gb|ACU18137.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225442460|ref|XP_002283642.1| PREDICTED: clavaminate synthase-like protein At3g21360 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743187|emb|CBI36054.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15232542|ref|NP_188773.1| clavaminate synthase-like protein [Arabidopsis thaliana] gi|73921104|sp|Q9LIG0.1|Y3136_ARATH RecName: Full=Clavaminate synthase-like protein At3g21360 gi|56967335|pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|56967336|pdb|1Y0Z|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|150261485|pdb|2Q4A|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|150261486|pdb|2Q4A|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|9294683|dbj|BAB03049.1| syringomycin biosynthesis enzyme-like protein [Arabidopsis thaliana] gi|26450615|dbj|BAC42419.1| unknown protein [Arabidopsis thaliana] gi|182623791|gb|ACB88834.1| At3g21360 [Arabidopsis thaliana] gi|332642979|gb|AEE76500.1| clavaminate synthase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830838|ref|XP_002883301.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329141|gb|EFH59560.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449447823|ref|XP_004141667.1| PREDICTED: clavaminate synthase-like protein At3g21360-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357454785|ref|XP_003597673.1| Clavaminate synthase-like protein [Medicago truncatula] gi|355486721|gb|AES67924.1| Clavaminate synthase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|195605474|gb|ACG24567.1| syringomycin biosynthesis enzyme [Zea mays] gi|223948315|gb|ACN28241.1| unknown [Zea mays] gi|223950165|gb|ACN29166.1| unknown [Zea mays] gi|414875921|tpg|DAA53052.1| TPA: Syringomycin biosynthesis enzyme [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2089423330 AT3G21360 [Arabidopsis thalian 0.946 0.966 0.724 1e-132
ASPGD|ASPL0000041251401 AN2698 [Emericella nidulans (t 0.878 0.738 0.290 3.9e-28
TAIR|locus:2089423 AT3G21360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
 Identities = 244/337 (72%), Positives = 287/337 (85%)

Query:     6 IEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLA-----EKVRTQKPFLDSLLLKA 60
             +E  IPQQ++Y     S PFP+V+SP P+ +  +  L+     + ++TQK +LDSLL ++
Sbjct:     7 VETPIPQQKHYE----SKPFPAVISP-PSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 61

Query:    61 GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
             G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct:    62 GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 120

Query:   121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
             HEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct:   121 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 180

Query:   181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPI 240
             LGE DDPSSPIGRGWKSTFLT DK++AE+       RA  LGMKLEW EDGG KT+MGPI
Sbjct:   181 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQ-------RAVDLGMKLEWTEDGGAKTVMGPI 233

Query:   241 PAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEES 300
             PAIKYDESR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE 
Sbjct:   234 PAIKYDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEEC 293

Query:   301 VAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK 337
             VA+PWQ+GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct:   294 VAVPWQRGDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
ASPGD|ASPL0000041251 AN2698 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LIG0Y3136_ARATH1, ., -, ., -, ., -0.72100.95250.9727yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
PLN00139320 PLN00139, PLN00139, hypothetical protein; Provisio 2e-92
pfam02668215 pfam02668, TauD, Taurine catabolism dioxygenase Ta 2e-20
cd00250262 cd00250, CAS_like, Clavaminic acid synthetase (CAS 1e-05
TIGR02410362 TIGR02410, carnitine_TMLD, trimethyllysine dioxyge 7e-05
TIGR02409366 TIGR02409, carnitine_bodg, gamma-butyrobetaine hyd 0.004
>gnl|CDD|165707 PLN00139, PLN00139, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  278 bits (712), Expect = 2e-92
 Identities = 131/313 (41%), Positives = 188/313 (60%), Gaps = 17/313 (5%)

Query: 26  PSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFG 85
           P VL P     +    L   ++  K + + +L+K  +VL RGFD VK A++FND++EAFG
Sbjct: 24  PLVLQPPEPNKSDTESLVSALKQNKDWFEQMLIKNSAVLLRGFD-VKNAEDFNDIIEAFG 82

Query: 86  YEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGG 145
           ++++ YVG  APRT++  R++TANE P  + I +HHEM  + E P K+  FCE+ P  GG
Sbjct: 83  WDDIRYVG-PAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPEGG 141

Query: 146 ETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKS 205
           +TP V S  V ERM  ++P+ VE++E  GL YT     K+D SS  GRGW+  F T DK+
Sbjct: 142 QTPFVPSFRVTERMLEEFPEAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKA 201

Query: 206 IAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIK-YDESRQRKIWFNSMVAAYTG 264
            AE        RA  LGM +EW+ +GGVKTI+GP    K +D  + R++WFN++V  +  
Sbjct: 202 EAER-------RAKALGMDMEWLPNGGVKTILGPRSLTKVFDGRKGRRMWFNTVVGMH-- 252

Query: 265 WKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRS 324
                     +    +G  +P + V  C  I+EEES+   W+KGDVL +DN A+LH RR 
Sbjct: 253 -----GKESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGDVLFLDNLALLHGRRP 307

Query: 325 FNPPRRILASLCK 337
             PPR++L + CK
Sbjct: 308 SLPPRKVLVATCK 320

Length = 320
>gnl|CDD|217174 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family Back     alignment and domain information
>gnl|CDD|238154 cd00250, CAS_like, Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases Back     alignment and domain information
>gnl|CDD|233855 TIGR02410, carnitine_TMLD, trimethyllysine dioxygenase Back     alignment and domain information
>gnl|CDD|233854 TIGR02409, carnitine_bodg, gamma-butyrobetaine hydroxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
PLN00139320 hypothetical protein; Provisional 100.0
PRK09553277 tauD taurine dioxygenase; Reviewed 100.0
TIGR02409366 carnitine_bodg gamma-butyrobetaine hydroxylase. Me 100.0
TIGR02410362 carnitine_TMLD trimethyllysine dioxygenase. Member 100.0
PF02668258 TauD: Taurine catabolism dioxygenase TauD, TfdA fa 100.0
cd00250262 CAS_like Clavaminic acid synthetase (CAS) -like; C 99.97
COG2175286 TauD Probable taurine catabolism dioxygenase [Seco 99.96
KOG3888407 consensus Gamma-butyrobetaine,2-oxoglutarate dioxy 99.91
KOG3889371 consensus Predicted gamma-butyrobetaine,2-oxogluta 99.91
PRK02963316 carbon starvation induced protein; Validated 99.86
PF08943297 CsiD: CsiD; InterPro: IPR015038 This group of prot 98.37
>PLN00139 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-67  Score=492.89  Aligned_cols=312  Identities=41%  Similarity=0.763  Sum_probs=280.1

Q ss_pred             ceeecCCCccccCCCCCCCCCCeEEecCCCCCCChHHHHHHHHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHh
Q 019661            5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAF   84 (337)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~   84 (337)
                      |.+-++++++.++    +.++|++|+|......+.+++.+|.+.++++|+++|.+||+|+||||+ +.++++|++|+++|
T Consensus         7 ~~~~~~~~~~~~~----~~~~p~vi~~~~~~~~~~~~l~~~~~~~~~~l~~~L~~hGavlfRG~~-i~~~~~f~~~a~~f   81 (320)
T PLN00139          7 FKVGKCEGQKVVD----GETMPLVLQPPEPNKSDTESLVSALKQNKDWFEQMLIKNSAVLLRGFD-VKNAEDFNDIIEAF   81 (320)
T ss_pred             eeeccccCcccCC----CCCCCeEEecCcccccchhhHHHHHHHHHHHHHHHHHHCCEEEECCCC-CCCHHHHHHHHHHh
Confidence            5566788888777    899999999987433456679999999999999999999999999999 87899999999999


Q ss_pred             CCCCCCCccCCccceeecCccccCCCCCCCCCcCcccCCCCCCCCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCc
Q 019661           85 GYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYP  164 (337)
Q Consensus        85 G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~i~~HtD~sy~~~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p  164 (337)
                      |...+.|.+ ..+|..+.+.|++++++|....|.||+|++|.+.||.+++|||+++|..||+|+|||+++||++|+++.|
T Consensus        82 g~~~~~y~~-~~~r~~v~~~v~t~te~P~~~~i~~H~E~sy~~~pP~~~~f~C~~~p~~GGeT~~aD~~~v~~~L~~~~p  160 (320)
T PLN00139         82 GWDDIRYVG-PAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPEGGQTPFVPSFRVTERMLEEFP  160 (320)
T ss_pred             CccccccCC-CCCcccccccEecCCCCCccccccccccccCccCCCceEEEEecccCCCCCCCeeecHHHHHHHhhhhCH
Confidence            998778877 4678878888998888888888999999999999999999999999999999999999999999998889


Q ss_pred             HHHHHHHhcceEEEEEcCCCCCCCCCCCCCcccccccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEE-eeeCeE
Q 019661          165 DFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIM-GPIPAI  243 (337)
Q Consensus       165 ~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~-~~~P~v  243 (337)
                      +++++|+++||+|+|+++.+....++.|++|+++|+|+|+++||+       +|++.|++++|.+||. +.+. ...|++
T Consensus       161 ~~~e~l~~~gv~y~r~~~~~~~~~~~~~~sWq~~F~t~d~~eve~-------~~~~~g~~~eW~~dg~-l~~~~~~~~~~  232 (320)
T PLN00139        161 EAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKAEAER-------RAKALGMDMEWLPNGG-VKTILGPRSLT  232 (320)
T ss_pred             HHHHHHHhcCceEEEeccccccccccccchHHHHhCCCCHHHHHH-------HHHHcCCeEEEcCCCc-EEEEEeeccce
Confidence            999999999999999887654334567899999999999999999       9999999999999997 4444 566777


Q ss_pred             Eec-CCCCceEEeecccccccCCCCCCCCCCccceeCCCCCCCHHHHHHHHHHHhhhccccccCCCCEEEEecccccccC
Q 019661          244 KYD-ESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHAR  322 (337)
Q Consensus       244 ~~h-P~tG~~~~fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~W~~GDili~DN~~v~HgR  322 (337)
                      +.| |.||+++|||+++.+|..       .+..++||||++|+.+++++|.+++++.++.++||+||||++||+++||||
T Consensus       233 ~~~~~~tg~~~wFN~~~~~h~~-------~~~~~~fGDGs~i~~~~l~~i~~~~~~~~~~~~Wq~GDvl~iDN~~~~HGR  305 (320)
T PLN00139        233 KVFDGRKGRRMWFNTVVGMHGK-------ESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGDVLFLDNLALLHGR  305 (320)
T ss_pred             eccCCCCCCEEEeechhhhhcc-------CCCCceecCCCcCCHHHHHHHHHHHHHhhccCCCCCCCEEEEeChhhhcCC
Confidence            775 599999999999887753       234679999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeeeccC
Q 019661          323 RSFNPPRRILASLCK  337 (337)
Q Consensus       323 ~~f~g~R~~~~~~~~  337 (337)
                      .+|+|+||++|+|++
T Consensus       306 ~pf~g~Rrvlv~m~~  320 (320)
T PLN00139        306 RPSLPPRKVLVATCK  320 (320)
T ss_pred             CCCCCCceEEEEecC
Confidence            999999999999985

>PRK09553 tauD taurine dioxygenase; Reviewed Back     alignment and domain information
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase Back     alignment and domain information
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase Back     alignment and domain information
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases Back     alignment and domain information
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases Back     alignment and domain information
>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism] Back     alignment and domain information
>PRK02963 carbon starvation induced protein; Validated Back     alignment and domain information
>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1y0z_A330 X-Ray Structure Of Gene Product From Arabidopsis Th 1e-144
>pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 Length = 330 Back     alignment and structure 
Iteration: 1

 Score =  507 bits (1306), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/337 (72%), Positives = 285/337 (84%), Gaps = 16/337 (4%)
Query: 5   FIEIKIPQQRNYNNINNSCPFPSVLSPNPAT----TATVSRLAEKVRTQKPFLDSLLLKA 60
            +E  IPQQ++Y     S PFP+V+SP  A+      ++    + ++TQK +LDSLL ++
Sbjct: 6   LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 61
Query: 61  GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
           G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct: 62  GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 120
Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
           HEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct: 121 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 180
Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPI 240
           LGE DDPSSPIGRGWKSTFLT DK++AE+       RA  LGMKLEW EDGG KT+MGPI
Sbjct: 181 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQ-------RAVDLGMKLEWTEDGGAKTVMGPI 233
Query: 241 PAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEES 300
           PAIKYDESR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE 
Sbjct: 234 PAIKYDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEEC 293
Query: 301 VAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK 337
           VA+PWQ+GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct: 294 VAVPWQRGDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
2q4a_A330 Clavaminate synthase-like protein AT3G21360; ensem 1e-94
2og5_A357 Putative oxygenase; non-ribosomal peptide synthesi 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
2wbq_A358 L-arginine beta-hydroxylase; oxidoreductase, non-h 2e-06
1ds1_A324 Clavaminate synthase 1; oxygenase, trifunctional e 3e-06
3eat_X293 Pyoverdine biosynthesis protein PVCB; paerucumarin 3e-05
3o2g_A388 Gamma-butyrobetaine dioxygenase; gamma-butyrobetai 3e-04
1jr7_A311 GABT protein, hypothetical 37.4 kDa protein in ILE 7e-04
1nx8_A273 CARC, carbapenem synthase; jelly roll, unknown fun 7e-04
>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha-ketoglutarat dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* Length = 357 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A* Length = 358 Back     alignment and structure
>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A* 1gvg_A* Length = 324 Back     alignment and structure
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa} Length = 293 Back     alignment and structure
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A Length = 388 Back     alignment and structure
>1jr7_A GABT protein, hypothetical 37.4 kDa protein in ILEY-GABD interg region; gamma amino-butyric acid metabolism, GABA; 2.00A {Escherichia coli} SCOP: b.82.2.3 PDB: 2r6s_A* Length = 311 Back     alignment and structure
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A* Length = 273 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
2q4a_A330 Clavaminate synthase-like protein AT3G21360; ensem 100.0
1oih_A301 Putative alkylsulfatase ATSK; non-heme Fe(II) alph 100.0
3pvj_A277 Alpha-ketoglutarate-dependent taurine dioxygenase; 100.0
1otj_A283 Alpha-ketoglutarate-dependent taurine dioxygenase; 100.0
3eat_X293 Pyoverdine biosynthesis protein PVCB; paerucumarin 100.0
3r1j_A301 Alpha-ketoglutarate-dependent taurine dioxygenase; 100.0
1nx8_A273 CARC, carbapenem synthase; jelly roll, unknown fun 100.0
3o2g_A388 Gamma-butyrobetaine dioxygenase; gamma-butyrobetai 100.0
2og5_A357 Putative oxygenase; non-ribosomal peptide synthesi 99.96
1ds1_A324 Clavaminate synthase 1; oxygenase, trifunctional e 99.95
2wbq_A358 L-arginine beta-hydroxylase; oxidoreductase, non-h 99.95
1jr7_A311 GABT protein, hypothetical 37.4 kDa protein in ILE 99.9
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C* Back     alignment and structure
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A* Back     alignment and structure
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A Back     alignment and structure
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A Back     alignment and structure
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A* Back     alignment and structure
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A Back     alignment and structure
>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha-ketoglutarat dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* Back     alignment and structure
>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A* 1gvg_A* Back     alignment and structure
>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A* Back     alignment and structure
>1jr7_A GABT protein, hypothetical 37.4 kDa protein in ILEY-GABD interg region; gamma amino-butyric acid metabolism, GABA; 2.00A {Escherichia coli} SCOP: b.82.2.3 PDB: 2r6s_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1y0za_327 b.82.2.8 (A:) Clavaminate synthase-like protein At 6e-86
d1nx4a_271 b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia c 7e-17
d1ds1a_323 b.82.2.2 (A:) Clavaminate synthase {Streptomyces c 2e-16
d1jr7a_311 b.82.2.3 (A:) Gab protein (hypothetical protein Yg 1e-04
d1oiha_288 b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudo 3e-04
d1otja_281 b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygen 3e-04
>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 327 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: gamma-Butyrobetaine hydroxylase
domain: Clavaminate synthase-like protein At3g21360
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  260 bits (664), Expect = 6e-86
 Identities = 243/337 (72%), Positives = 284/337 (84%), Gaps = 16/337 (4%)

Query: 5   FIEIKIPQQRNYNNINNSCPFPSVLSPN----PATTATVSRLAEKVRTQKPFLDSLLLKA 60
            +E  IPQQ++Y     S PFP+V+SP     P    ++    + ++TQK +LDSLL ++
Sbjct: 3   LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 58

Query: 61  GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
           G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct: 59  GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 117

Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
           HEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct: 118 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 177

Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPI 240
           LGE DDPSSPIGRGWKSTFLT DK++AE+       RA  LGMKLEW EDGG KT+MGPI
Sbjct: 178 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQ-------RAVDLGMKLEWTEDGGAKTVMGPI 230

Query: 241 PAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEES 300
           PAIKYDESR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE 
Sbjct: 231 PAIKYDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEEC 290

Query: 301 VAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK 337
           VA+PWQ+GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct: 291 VAVPWQRGDVLLIDNWAVLHSRRPFDPPRRVLASLCK 327
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]} Length = 271 Back     information, alignment and structure
>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 323 Back     information, alignment and structure
>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]} Length = 311 Back     information, alignment and structure
>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]} Length = 288 Back     information, alignment and structure
>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]} Length = 281 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1y0za_327 Clavaminate synthase-like protein At3g21360 {Thale 100.0
d1oiha_288 Putative alkylsulfatase AtsK {Pseudomonas putida [ 100.0
d1otja_281 Taurine/alpha-ketoglutarate dioxygenase TauD {Esch 100.0
d1nx4a_271 Carbapenem synthase, CarC {Erwinia carotovora [Tax 100.0
d1ds1a_323 Clavaminate synthase {Streptomyces clavuligerus [T 99.94
d1jr7a_311 Gab protein (hypothetical protein YgaT) {Escherich 99.76
>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: gamma-Butyrobetaine hydroxylase
domain: Clavaminate synthase-like protein At3g21360
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.9e-65  Score=479.64  Aligned_cols=321  Identities=76%  Similarity=1.327  Sum_probs=295.5

Q ss_pred             ceeecCCCccccCCCCCCCCCCeEEecCCCC----CCChHHHHHHHHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHH
Q 019661            5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPAT----TATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDV   80 (337)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~----~~~~~~l~~~~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~   80 (337)
                      ++.-.+|.++...    ..+||++|+|.+..    ..+.+.+.+|.++++++|+++|.+||+|+||||+ ++++++|.+|
T Consensus         3 ~~~~~~~~~~~~~----~~~~p~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~GvvlfRg~~-l~~~~~f~~f   77 (327)
T d1y0za_           3 LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHESGAVLFRGFP-VNSADDFNDV   77 (327)
T ss_dssp             CEECCCSSCEEET----TEEESEEEECC------CCCCHHHHHHHHHHTHHHHHHHHHHHSEEEECSSC-CCSHHHHHHH
T ss_pred             cccCCCCchhccC----CCCCCeEEecCCCCCCccccChhhhhHHHHHHHHHHHHHHHHCCEEEECCCC-CCCHHHHHHH
Confidence            4567899999999    99999999998842    4678889999999999999999999999999999 9889999999


Q ss_pred             HHHhCCCCCCCccCCccceeecCccccCCCCCCCCCcCcccCCCCCCCCCceEEeeeeecCCCCcccccccHHHHHHHhh
Q 019661           81 VEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMK  160 (337)
Q Consensus        81 ~~~~G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~i~~HtD~sy~~~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~  160 (337)
                      +++||.....|.++..+|..+.++|+++++.++...+.||+|++|.+.||.+++|||+++|..||+|.|||++++|+.|+
T Consensus        78 ~~~fG~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~HtD~sy~~~pP~~~~l~c~~~p~~GGeT~f~d~~~ay~~L~  157 (327)
T d1y0za_          78 VEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMK  157 (327)
T ss_dssp             HHHHCCCBCCCCSSSCCEEEEETTEEEECCSCTTSCEEEECTTTTSSSCCSEEEEEEEECCSEECCCCEEEHHHHHHHHH
T ss_pred             HHHhCCcccCccCCCCCccccCCceecCCCCCCccceecccCCccccCCCceEEEEeeecCCCCCCCEEEeHHHHHHhcC
Confidence            99999887888887888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCcccccccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEEeee
Q 019661          161 HKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPI  240 (337)
Q Consensus       161 ~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~  240 (337)
                      ++.|+++++|++.++.|.+.++...+.....+.+|++.|+++++.+++.       ++++.+++++|.+++........|
T Consensus       158 ~~~~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~~~f~t~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~~  230 (327)
T d1y0za_         158 DKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDKNLAEQ-------RAVDLGMKLEWTEDGGAKTVMGPI  230 (327)
T ss_dssp             HHCHHHHHHHHHHCEEEEEEECSSBCTTSTTCCCHHHHTTCSCHHHHHH-------HHHHTTCEEEECTTSCEEEEEEEE
T ss_pred             hhchhhhhhceecceeeEeecccccccccccccchhhhcccccHHHHHH-------Hhhhccccccccccccccceeecc
Confidence            9999999999999999999998766666677899999999999999998       999999999999998755566789


Q ss_pred             CeEEecCCCCceEEeecccccccCCCCCCCCCCccceeCCCCCCCHHHHHHHHHHHhhhccccccCCCCEEEEecccccc
Q 019661          241 PAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLH  320 (337)
Q Consensus       241 P~v~~hP~tG~~~~fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~W~~GDili~DN~~v~H  320 (337)
                      |+|++||.||+++|||+....+..+.......+..+.||||+++++++++++.+++++++|+|+||+||||||||+++||
T Consensus       231 p~v~~hP~tg~k~~f~~~~~~~~~~~~~~~~~~~~~~fgDG~~i~~~ll~~i~~~~~~~~~~~~Wq~GDlvi~DN~~~lH  310 (327)
T d1y0za_         231 PAIKYDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLIDNWAVLH  310 (327)
T ss_dssp             CSCEEETTTTEEECCSCHHHHHHHCCBTTBCGGGTEEETTSCCCCHHHHHHHHHHHHHHCBCCCCCTTCEEEEETTTEEE
T ss_pred             ccEEeCCCCccceeeccceeEEeecccccccchhhccccCCccchHHHHHHHHHhCcceEEEeecCCCCEEEEecchhhh
Confidence            99999999999999999888888777766777889999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeeeccC
Q 019661          321 ARRSFNPPRRILASLCK  337 (337)
Q Consensus       321 gR~~f~g~R~~~~~~~~  337 (337)
                      ||++|+|+|||+|+|++
T Consensus       311 gR~~f~g~Rrv~~~l~~  327 (327)
T d1y0za_         311 SRRPFDPPRRVLASLCK  327 (327)
T ss_dssp             EECCEESCCEEEEEEEC
T ss_pred             CCCCCCCCceEEEEecC
Confidence            99999999999999974
>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure