Citrus Sinensis ID: 019664

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVSSNFL
ccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccEEEEccccccccccccccHHHHHHHccccEEEEEEEcEEEEEccEEEEccccEEEccccEEEEEccccEEEEcccEEEEEccEEEccccccccEEEcccccccccccccccEEEEEccccEEEEccEEcccccccEEEEEccEEEEEEEEEEEccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccEEEccccEEEccccccEEEEEcEEEEccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHcccccccEEEEcccEEEEEEccEEEEEEEccEEccccccHHHcccccEEEEccEEEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccHHHHHHHHc
MAIPSPSLSIFLLFLMTPALIlasavpdpelvVHEVHKSINASrrnlgylscgtgnpiddcwrcdpnwekNRQRLADCAIgfgknavggrdgriyvvtdpgdydvvnpkpgtlryaviqdepLWIIFARDMTIRLKEELIMNSFktidgrgasvhiaggpcitiQYVTNIIIHGlnihdckkggnamvrdsprhfgwrtvsdgdgvsifgGTHIWvdhcslsncddglvdaihgstaitisnnfmthHDKVMllghsdtytqdkNMQVTIAFNHFGEglvqriprcrhgyfhvvnndythwemyaiggsanptinsqgnrfaapdrafskeVSSNFL
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSInasrrnlgylsCGTGNPIDDCWRCDPNWEKNRQRLADCAIgfgknavggrdgRIYVVTDPGDYDVVNPKPGTlryaviqdeplWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAapdrafskevssnfl
MAipspslsifllflMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVSSNFL
*******LSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGS****************************
*****PS*SIFLLFLMTPALILASAVPDPELVVHEVHK**************GTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSK***SNFL
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAF*********
*AIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVSSNFL
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVSSNFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q93Z25432 Probable pectate lyase 22 yes no 0.961 0.75 0.819 1e-162
Q9FXD8408 Probable pectate lyase 5 no no 0.937 0.774 0.832 1e-161
Q9C5M8408 Probable pectate lyase 18 no no 0.988 0.816 0.818 1e-160
Q944R1470 Probable pectate lyase 15 no no 0.908 0.651 0.756 1e-146
O24554401 Pectate lyase OS=Zinnia e N/A no 0.958 0.805 0.777 1e-145
Q9LTZ0412 Putative pectate lyase 11 no no 0.970 0.793 0.753 1e-144
Q9LJ42440 Probable pectate lyase 10 no no 0.916 0.702 0.749 1e-143
Q940Q1431 Probable pectate lyase 1 no no 0.916 0.716 0.741 1e-141
Q9M8Z8416 Probable pectate lyase 8 no no 0.916 0.742 0.745 1e-140
Q9SVQ6438 Putative pectate lyase 14 no no 0.916 0.705 0.75 1e-136
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function desciption
 Score =  569 bits (1467), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 267/326 (81%), Positives = 295/326 (90%), Gaps = 2/326 (0%)

Query: 10  IFLLFLMTPALILASAVPDPELVVHEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPN 67
           IF   ++  AL  +  V DPELVV EVH+ IN S  RR LG+ SCG+GNPIDDCWRCD +
Sbjct: 34  IFFCCILFSALASSLPVSDPELVVEEVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKD 93

Query: 68  WEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIF 127
           WEKNR+RLADC IGFGKNA+GGRDG IYVVTDPG+ D VNP+PGTLRYAVIQDEPLWIIF
Sbjct: 94  WEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIF 153

Query: 128 ARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAM 187
            RDMTI+LKEELIMNSFKT+DGRGASVHI+GGPCITIQYVTNIIIHGL+IHDCK+GGN  
Sbjct: 154 KRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTY 213

Query: 188 VRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247
           VRDSP H+G+RTVSDGDGVSIFGG+H+WVDHCSLSNC+DGL+DAI GSTAITISNN++TH
Sbjct: 214 VRDSPEHYGYRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTH 273

Query: 248 HDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIG 307
           H+KVMLLGHSDTY QDKNMQVTIAFNHFGEGLVQR+PRCRHGYFHVVNNDYTHWEMYAIG
Sbjct: 274 HNKVMLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 333

Query: 308 GSANPTINSQGNRFAAPDRAFSKEVS 333
           GSANPTINSQGNRF APD + SKEV+
Sbjct: 334 GSANPTINSQGNRFLAPDDSSSKEVT 359

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVQ6|PLY14_ARATH Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
224136005403 predicted protein [Populus trichocarpa] 0.943 0.789 0.896 1e-170
345104287411 pectate lyase [Gossypium schwendimanii] 0.928 0.761 0.891 1e-169
224121874403 predicted protein [Populus trichocarpa] 0.940 0.786 0.889 1e-169
345104285411 pectate lyase [Gossypium laxum] gi|34510 0.916 0.751 0.899 1e-168
345104283411 pectate lyase [Gossypium thurberi] gi|34 0.916 0.751 0.899 1e-168
284504576411 pectate lyase [Gossypium hirsutum] gi|28 0.916 0.751 0.899 1e-168
345104311411 pectate lyase [Gossypium hirsutum subsp. 0.913 0.749 0.899 1e-168
284504578411 pectate lyase [Gossypium barbadense] gi| 0.913 0.749 0.899 1e-168
284504572411 pectate lyase [Gossypium raimondii] 0.913 0.749 0.899 1e-168
284504570411 pectate lyase [Gossypium herbaceum] 0.913 0.749 0.899 1e-168
>gi|224136005|ref|XP_002322215.1| predicted protein [Populus trichocarpa] gi|222869211|gb|EEF06342.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/318 (89%), Positives = 305/318 (95%)

Query: 17  TPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 76
           TPALI +S V DPELVV EVH++INASRR LGYLSCGTGNPIDDCWRCDPNWEKNRQRLA
Sbjct: 16  TPALISSSPVQDPELVVQEVHRAINASRRKLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 75

Query: 77  DCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK 136
           DCAIGFGKNA+GGRDG+IYVVTD G+ D VNP+PGTLR+AVIQ+EPLWIIFARDMTI+LK
Sbjct: 76  DCAIGFGKNAIGGRDGKIYVVTDSGNDDPVNPRPGTLRHAVIQEEPLWIIFARDMTIQLK 135

Query: 137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFG 196
           EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGL+IHDCK+GGNAMVRDSP+HFG
Sbjct: 136 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNAMVRDSPKHFG 195

Query: 197 WRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGH 256
           WRTVSDGDGVSIFGGTH+WVDH SLSNC+DGLVDAIHGS+AITISNN+MTHHDKVMLLGH
Sbjct: 196 WRTVSDGDGVSIFGGTHVWVDHNSLSNCNDGLVDAIHGSSAITISNNYMTHHDKVMLLGH 255

Query: 257 SDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 316
           SD+YTQDKNMQVTIAFNHFGEGLVQR+PRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS
Sbjct: 256 SDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 315

Query: 317 QGNRFAAPDRAFSKEVSS 334
           QGNRF APD  FSKEV+ 
Sbjct: 316 QGNRFVAPDIRFSKEVTK 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|345104287|gb|AEN70965.1| pectate lyase [Gossypium schwendimanii] Back     alignment and taxonomy information
>gi|224121874|ref|XP_002318694.1| predicted protein [Populus trichocarpa] gi|222859367|gb|EEE96914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|345104285|gb|AEN70964.1| pectate lyase [Gossypium laxum] gi|345104323|gb|AEN70983.1| pectate lyase [Gossypium aridum] Back     alignment and taxonomy information
>gi|345104283|gb|AEN70963.1| pectate lyase [Gossypium thurberi] gi|345104289|gb|AEN70966.1| pectate lyase [Gossypium turneri] gi|345104315|gb|AEN70979.1| pectate lyase [Gossypium armourianum] gi|345104317|gb|AEN70980.1| pectate lyase [Gossypium harknessii] gi|345104329|gb|AEN70986.1| pectate lyase [Gossypium trilobum] Back     alignment and taxonomy information
>gi|284504576|gb|ADB90478.1| pectate lyase [Gossypium hirsutum] gi|284504580|gb|ADB90480.1| pectate lyase [Gossypium barbadense] gi|345104297|gb|AEN70970.1| pectate lyase [Gossypium darwinii] gi|345104301|gb|AEN70972.1| pectate lyase [Gossypium tomentosum] gi|345104305|gb|AEN70974.1| pectate lyase [Gossypium barbadense var. brasiliense] gi|345104309|gb|AEN70976.1| pectate lyase [Gossypium barbadense var. peruvianum] gi|345104313|gb|AEN70978.1| pectate lyase [Gossypium hirsutum subsp. latifolium] Back     alignment and taxonomy information
>gi|345104311|gb|AEN70977.1| pectate lyase [Gossypium hirsutum subsp. latifolium] Back     alignment and taxonomy information
>gi|284504578|gb|ADB90479.1| pectate lyase [Gossypium barbadense] gi|345104291|gb|AEN70967.1| pectate lyase [Gossypium mustelinum] gi|345104295|gb|AEN70969.1| pectate lyase [Gossypium darwinii] gi|345104299|gb|AEN70971.1| pectate lyase [Gossypium tomentosum] gi|345104303|gb|AEN70973.1| pectate lyase [Gossypium barbadense var. brasiliense] gi|345104307|gb|AEN70975.1| pectate lyase [Gossypium barbadense var. peruvianum] Back     alignment and taxonomy information
>gi|284504572|gb|ADB90476.1| pectate lyase [Gossypium raimondii] Back     alignment and taxonomy information
>gi|284504570|gb|ADB90475.1| pectate lyase [Gossypium herbaceum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.937 0.774 0.849 1.5e-154
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.931 0.726 0.836 1.1e-151
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.943 0.779 0.827 2.3e-151
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.931 0.762 0.784 6.1e-142
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.908 0.651 0.756 2.3e-135
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.916 0.702 0.749 6.9e-134
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.913 0.714 0.743 1.8e-133
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.916 0.741 0.745 1e-132
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.916 0.742 0.745 3.4e-132
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.916 0.683 0.711 3.7e-126
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1507 (535.5 bits), Expect = 1.5e-154, P = 1.5e-154
 Identities = 271/319 (84%), Positives = 298/319 (93%)

Query:    20 LILASAVPDPELVVHEVHKSINAS---RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 76
             L L+S VPDPE VV EVHKSINAS   RR LGYLSC TGNPIDDCWRCDP+WE++RQRLA
Sbjct:    21 LFLSSPVPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLA 80

Query:    77 DCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK 136
             DCAIGFGKNA+GGRDGRIYVVTD G+ + V+PKPGTLR+AV+QDEPLWIIF RDMTI+LK
Sbjct:    81 DCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLK 140

Query:   137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFG 196
             EELIMNSFKTIDGRGASVHI+GGPCITIQYVTNIIIHG++IHDCK+GGNAMVR SPRHFG
Sbjct:   141 EELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHFG 200

Query:   197 WRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGH 256
             WRT+SDGDGVSIFGG+H+WVDHCS SNC+DGL+DAI GSTAIT+SNN MTHHDKVMLLGH
Sbjct:   201 WRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGH 260

Query:   257 SDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 316
             SDTY++DKNMQVTIAFNHFGEGLVQR+PRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS
Sbjct:   261 SDTYSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 320

Query:   317 QGNRFAAPDRAFSKEVSSN 335
             QGNRF AP+  FSKEV+ +
Sbjct:   321 QGNRFLAPNIRFSKEVTKH 339
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0006949 "syncytium formation" evidence=RCA
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93Z25PLY22_ARATH4, ., 2, ., 2, ., 20.81900.96140.75yesno
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.77700.95840.8054N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.76280.91980.7673N/Ano
Q9C5M8PLY18_ARATH4, ., 2, ., 2, ., 20.81890.98810.8161nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.976
4th Layer4.2.2.20.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
smart00656190 smart00656, Amb_all, Amb_all domain 5e-81
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 5e-75
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 2e-25
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  244 bits (624), Expect = 5e-81
 Identities = 103/207 (49%), Positives = 125/207 (60%), Gaps = 28/207 (13%)

Query: 130 DMTIRLK--EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAM 187
           D+TI L     +I+NS KTIDGRG+ V I GG  +TI+ V+N+II  L IHD K      
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 188 VRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC---------DDGLVDAIHGSTAI 238
                        SDGD +SI G +++W+DH SLS C          DGL+D  +GST +
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 239 TISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDY 298
           TISNN+  +H KVMLLGHSD+ T D  M+VTIA N+FG  L QR PR R GY HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 299 THWEMYAIGGSANPTINSQGNRFAAPD 325
           T W  YAIGG    TI S+GN F AP 
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.82
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.42
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.11
PLN02218431 polygalacturonase ADPG 97.99
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.91
PLN02155394 polygalacturonase 97.78
PLN02793443 Probable polygalacturonase 97.78
PLN03003 456 Probable polygalacturonase At3g15720 97.77
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.75
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.72
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.6
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.57
PLN03010409 polygalacturonase 97.54
PLN02218431 polygalacturonase ADPG 97.52
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.49
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.45
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.41
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.4
PLN03003 456 Probable polygalacturonase At3g15720 97.1
PLN02155394 polygalacturonase 97.0
PLN03010409 polygalacturonase 97.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.95
PLN02197588 pectinesterase 96.76
smart00656190 Amb_all Amb_all domain. 96.74
PLN02793 443 Probable polygalacturonase 96.67
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.65
PLN02480343 Probable pectinesterase 96.5
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.44
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.26
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.85
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.42
PLN02176340 putative pectinesterase 95.08
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.66
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.38
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 94.25
PLN02432293 putative pectinesterase 94.23
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.61
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.49
PLN02301548 pectinesterase/pectinesterase inhibitor 93.42
PLN02304379 probable pectinesterase 93.15
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 93.05
PLN02314586 pectinesterase 93.03
PLN02916502 pectinesterase family protein 93.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 92.97
PLN02634359 probable pectinesterase 92.69
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.5
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 92.46
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.46
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.43
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.11
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 92.08
PLN02682369 pectinesterase family protein 91.89
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 91.32
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 91.15
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 90.86
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 90.76
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.71
PLN02468565 putative pectinesterase/pectinesterase inhibitor 90.32
PLN02313587 Pectinesterase/pectinesterase inhibitor 90.31
PLN02671359 pectinesterase 90.26
PLN02773317 pectinesterase 90.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 88.74
PLN02665366 pectinesterase family protein 88.09
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 85.63
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 85.6
PRK10531422 acyl-CoA thioesterase; Provisional 85.55
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 82.71
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 82.45
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 81.79
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-54  Score=411.23  Aligned_cols=216  Identities=34%  Similarity=0.464  Sum_probs=189.4

Q ss_pred             CCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEEeC------cceEeccCeEEeccCceEEEe
Q 019664           84 KNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK------EELIMNSFKTIDGRGASVHIA  157 (337)
Q Consensus        84 ~~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~v~SnkTI~G~ga~~~I~  157 (337)
                      .+||||.||++++|++.+|          |..++...+|.++|+-++|+|++.      .+|.+.|||||.|.|++++|.
T Consensus        46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~  115 (345)
T COG3866          46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV  115 (345)
T ss_pred             CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence            3799999999999999988          888899999996666667788876      467789999999999999999


Q ss_pred             CCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEE-eCCceEEEEeeEeeC--------CCCCc
Q 019664          158 GGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTHIWVDHCSLSN--------CDDGL  228 (337)
Q Consensus       158 gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI-~gs~nVWIDHcs~s~--------~~Dgl  228 (337)
                       |+||+|+.+.|||||||+|++...++                ...|+|+| .+++|||||||+|+.        ..||+
T Consensus       116 -g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl  178 (345)
T COG3866         116 -GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL  178 (345)
T ss_pred             -eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence             67999999999999999999864321                12599999 578999999999999        68999


Q ss_pred             eeeeeCCceEEEEcceecccCeeeeecCCCcc-cCCCcceEEEEeeeecCCCcCCCccccCcEEEEEcCeeeCCcce--E
Q 019664          229 VDAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMY--A  305 (337)
Q Consensus       229 iDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~VTih~N~f~~~~~~R~Pr~R~G~~Hv~NN~y~~w~~y--a  305 (337)
                      +|+++++++||||||+|++|+|.+|+|.+|+. .+|+..+||+||||| +|+.||+||+|||++||+||||+....|  |
T Consensus       179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a  257 (345)
T COG3866         179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVA  257 (345)
T ss_pred             EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceE
Confidence            99999999999999999999999999999985 457889999999999 7999999999999999999999976544  5


Q ss_pred             EecCCCceEEEEceEEECCCCC
Q 019664          306 IGGSANPTINSQGNRFAAPDRA  327 (337)
Q Consensus       306 igg~~~~~i~~egN~F~a~~~~  327 (337)
                      ++-...++|++|+|||+....+
T Consensus       258 ~~iG~~AkiyvE~NyF~~~~~~  279 (345)
T COG3866         258 ITIGTSAKIYVENNYFENGSEG  279 (345)
T ss_pred             EeeccceEEEEecceeccCCCC
Confidence            5444449999999999996544

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 4e-82
3zsc_A340 Catalytic Function And Substrate Recognition Of The 5e-16
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 1e-14
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 3e-14
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 3e-14
3krg_A399 Structural Insights Into Substrate Specificity And 4e-14
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 8e-14
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 1e-13
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 1e-13
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 6e-11
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 3e-08
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 3e-08
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 3e-08
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 5e-06
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (771), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 148/285 (51%), Positives = 196/285 (68%), Gaps = 13/285 (4%)
Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60
Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 175 LNIHDCKKG--GNAMVRDS----PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGL 228
           L+IH C     G+ +V +S    P H       DGD +++   T+ W+DH SLS+C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 229 VDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH 288
           +D   GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR R+
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 289 GYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVS 333
           G  HV NN+Y  W +YAIGGS+NPTI S+GN F AP  ++ KEV+
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVT 280
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-122
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 8e-91
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 7e-76
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 1e-74
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 5e-74
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 1e-69
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 2e-65
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 1e-64
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 9e-64
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 1e-57
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 2e-54
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-07
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 5e-07
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-05
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-04
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-04
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 7e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  353 bits (908), Expect = e-122
 Identities = 144/283 (50%), Positives = 189/283 (66%), Gaps = 3/283 (1%)

Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 175 LNIHDCKKGGNAMVRDSPR-HFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH 233
           L+IH C       V  S           DGD +++   T+ W+DH SLS+C DGL+D   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 234 GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHV 293
           GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 294 VNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVSSNF 336
            NN+Y  W +YAIGGS+NPTI S+GN F AP  ++ KEV+   
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRI 283
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.46
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.43
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.09
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.06
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.06
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.05
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.05
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.02
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.01
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.01
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.96
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.95
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.92
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.91
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.89
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.89
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.86
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.82
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.8
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.76
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.75
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.72
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.7
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.62
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.51
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.41
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.3
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.3
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.23
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.22
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.17
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.11
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.05
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.04
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.03
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.02
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.93
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.84
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.77
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.74
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.67
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.67
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.52
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.51
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.42
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.02
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.82
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.71
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.64
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.38
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 94.83
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.56
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 91.37
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 88.87
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 81.95
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 81.8
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=3.8e-93  Score=695.31  Aligned_cols=282  Identities=51%  Similarity=0.940  Sum_probs=272.5

Q ss_pred             CCCCcceeccCcccccCccccccCcccccCCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEE
Q 019664           55 GNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIR  134 (337)
Q Consensus        55 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~  134 (337)
                      +||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+|+++++||||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999877 6899999999999999999999999999999


Q ss_pred             eCcceEeccCeEEeccCceEEEeC-CceEEEeeeceEEEEeeEEEecccCCCccc-cCCCCCcCCccccCCCeEEEeCCc
Q 019664          135 LKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDCKKGGNAMV-RDSPRHFGWRTVSDGDGVSIFGGT  212 (337)
Q Consensus       135 L~~~L~v~SnkTI~G~ga~~~I~g-G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i-~~s~~~~g~r~~~dgDaIsI~gs~  212 (337)
                      |+++|+|.|||||+|+|++++|.| |+||++++++|||||||+|+++.|+++++| |++++|+|.+...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999997 789999999999999999999999888877 999999999888999999999999


Q ss_pred             eEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCccccCcEEE
Q 019664          213 HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFH  292 (337)
Q Consensus       213 nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R~G~~H  292 (337)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+.+.|+.|+||||||+|++++.+||||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999999888889999999999966899999999999999


Q ss_pred             EEcCeeeCCcceEEecCCCceEEEEceEEECCCCCCCcccccccC
Q 019664          293 VVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVSSNFL  337 (337)
Q Consensus       293 v~NN~y~~w~~yaigg~~~~~i~~egN~F~a~~~~~~k~vt~r~~  337 (337)
                      ++||||++|.+|++++++++++++|+|||+++++|.+|+||||+.
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~  284 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIG  284 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECS
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEec
Confidence            999999999999999999999999999999999999999999973
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-125
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 3e-74
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-60
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 4e-58
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-54
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-37
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-06
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-04
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-04
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  361 bits (927), Expect = e-125
 Identities = 144/283 (50%), Positives = 189/283 (66%), Gaps = 3/283 (1%)

Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 175 LNIHDCKKGGNAMVRDSP-RHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH 233
           L+IH C       V  S           DGD +++   T+ W+DH SLS+C DGL+D   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 234 GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHV 293
           GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 294 VNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVSSNF 336
            NN+Y  W +YAIGGS+NPTI S+GN F AP  ++ KEV+   
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRI 283
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.17
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.08
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.03
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.89
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.88
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.86
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.41
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.4
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.34
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.32
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.21
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.19
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.18
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.06
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.94
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.83
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.76
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.49
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.48
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.34
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.9
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.76
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.82
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.28
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.67
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 93.33
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 93.08
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 90.95
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 85.5
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=2.1e-89  Score=665.99  Aligned_cols=281  Identities=51%  Similarity=0.945  Sum_probs=259.4

Q ss_pred             CCCCcceeccCcccccCccccccCcccccCCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEE
Q 019664           55 GNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIR  134 (337)
Q Consensus        55 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~  134 (337)
                      .||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            399999999999999999999999999999999999999999999987 6889999999999999999999999999999


Q ss_pred             eCcceEeccCeEEeccCceEEEeC-CceEEEeeeceEEEEeeEEEecccCCCccccCCC-CCcCCccccCCCeEEEeCCc
Q 019664          135 LKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSP-RHFGWRTVSDGDGVSIFGGT  212 (337)
Q Consensus       135 L~~~L~v~SnkTI~G~ga~~~I~g-G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~-~~~g~r~~~dgDaIsI~gs~  212 (337)
                      |+++|.|+|||||+|||++++|.+ |.+|.++.++|||||||+||++.+...+.+..++ .+.+.+...++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999985 6679999999999999999988766544432221 22233345789999999999


Q ss_pred             eEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCccccCcEEE
Q 019664          213 HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFH  292 (337)
Q Consensus       213 nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R~G~~H  292 (337)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|++|+|+++....+..++||||||+|.++..+|+|++|+|.+|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999998877888999999999988889999999999999


Q ss_pred             EEcCeeeCCcceEEecCCCceEEEEceEEECCCCCCCccccccc
Q 019664          293 VVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVSSNF  336 (337)
Q Consensus       293 v~NN~y~~w~~yaigg~~~~~i~~egN~F~a~~~~~~k~vt~r~  336 (337)
                      ++||||++|..|++++++++++++|+|||+++++|..|++++++
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~  283 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRI  283 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEEC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeeccc
Confidence            99999999999999999999999999999999999999998874
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure