Citrus Sinensis ID: 019666

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MMFSVRLSTLILGTQMADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Secondary Structure (PSIPRED)
cccccHHHHHHHcccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEcccccEEEccccccccccccccEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEEEcHcHHHHcccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEccEccccccccccccEEEEEEHHcccccccccccccc
Coil and Loop (DISEMBL)
MMFSVRLSTLILGtqmadtqeieetpseahsgdasqkKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASlgysssngneksnLDNLVKAVAGVTVisqhdqakpskgtkRREKRAQQEAAREQRIQEEQSNivsdrtvedeklekklgplgltvndikpdghclYRAVEDQLahlsggaspynFQQLRQMVAAYMRdhssdflpfylsenmigeesAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHImiysgsfpdvemgkeysnggsdssgsSIILSYHRhafglgehynsvipi
Flexible Loop (DISEMBL)
MMFSVRLSTLILGTQMADTQEIEetpseahsgdasqkkQETRDEMLSRHRkeisqlqnkETELKKaaakgskaeqkakkkqVEEEISRLSAKLREKHAKELAslgysssngneKSNLDNLVKAVAGVTVisqhdqakpskgtkrrEKRAQQEAAreqriqeeqsnivsdrtvedeklekklgplgltvndikPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFglgehynsvipi
Low Complexity Region (SEG)
MMFSVRLSTLILGTQMADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETelkkaaakgskaeqkakkkqveeeISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKrrekraqqeaareqriqeeqSNIVSDRTVEDeklekklgplglTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYsnggsdssgssIILSYHRHAFGLGEHYNSVIPI
Disordered region (IsUnstruct)
**********I************************************************************************************************************LVKAVAGVTVI***************************************************GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIG*******VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD******************IILSYHRHAFGLGEHYN*****
Disordered Region (DISOPRED)
*******************************************************************************************************************************************************************************KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG*************SIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISEMBL)
MMFSVRLSTLILGTQMAD********************************************************************SRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVIS****************************QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKE*********GSSIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISPRO)
*MFSVRLSTLILGTQMAD************************DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLG*****************************************************IQ****NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMFSVRLSTLILGTQMADTQEIEETPSEAHSGDASQKKQETRDEMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q7ZV00	293	OTU domain-containing pro	yes	no	0.807	0.928	0.392	2e-44
Q5M8L0	294	OTU domain-containing pro	yes	no	0.789	0.904	0.375	3e-43
Q5ZIP6	302	OTU domain-containing pro	yes	no	0.801	0.894	0.376	1e-42
Q6GM06	294	OTU domain-containing pro	N/A	no	0.795	0.911	0.380	2e-42
Q8N6M0	293	OTU domain-containing pro	yes	no	0.780	0.897	0.368	6e-41
Q8K2H2	294	OTU domain-containing pro	yes	no	0.798	0.914	0.365	3e-39
Q6IE21	290	OTU domain-containing pro	no	no	0.786	0.913	0.336	4e-38
Q7L8S5	288	OTU domain-containing pro	no	no	0.771	0.902	0.328	2e-33
Q9UUK3	324	Ubiquitin thioesterase ot	yes	no	0.836	0.870	0.265	1e-24
P38747	307	OTU domain-containing pro	yes	no	0.839	0.921	0.271	3e-22

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 165/306 (53%), Gaps = 34/306 (11%)

Query: 40  ETRDEMLSR-HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98
           ET +E L++ HRKE   LQ K   +K A  K  K     ++KQ+ E+I++L A+L +KH 
Sbjct: 5   ETAEEQLAKQHRKEKKDLQAKIQSMKNAVPKNDKK----RRKQLTEDIAKLEAELSQKHE 60

Query: 99  KELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSK------GTKRREKRAQQE 152
            EL     SS        ++ +  A+  ++V +  +Q+ PSK        KRR+K+A  E
Sbjct: 61  NELKLQNTSS--------VEEVSDALDSMSVANHEEQSDPSKQSRTSKAQKRRDKKAALE 112

Query: 153 AAREQRIQE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSG 211
             RE RI E E  N+   R  E  KL +KL    L + +I  DGHC+YRAVE QL    G
Sbjct: 113 KEREMRIAEAEVENLSGSRHQEGLKLREKLVERHLQIKEISSDGHCMYRAVEHQLTE-RG 171

Query: 212 GASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAW 271
            A     ++LR   A YMR H+ DF+PF  + N     +A    E FE YC +V  TAAW
Sbjct: 172 LA--LGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTA----EEFEKYCSDVADTAAW 225

Query: 272 GGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY 331
           GG+LEL+AL+  L+  I +     P + +G+EY           I L Y RHA+GLGEHY
Sbjct: 226 GGQLELKALSQVLQLPIEVIQADSPCITIGEEYDK-------PKITLIYMRHAYGLGEHY 278

Query: 332 NSVIPI 337
           NSV P+
Sbjct: 279 NSVEPL 284

Danio rerio (taxid: 7955)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 162/296 (54%), Gaps = 30/296 (10%)

Query: 45  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104
           ++ +HRKE   LQ K   +K +  K  K     ++KQ+ E+I++L A L  +H +EL + 
Sbjct: 13  LIKQHRKEKRDLQAKIQSMKNSVPKNDKK----RRKQLTEDIAKLEADLDVRHKEELEAF 68

Query: 105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQA-----KPSKGTKRREKRAQQEAAREQRI 159
                   + S + N      GVT +   ++A     + SK  KRREK+A QE  R++RI
Sbjct: 69  AQKQPEPTQVSGITN------GVTSLDLGNEAPVQQPRQSKAQKRREKKAAQEKERDERI 122

Query: 160 QE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNF 218
            E E +N+   R +E +KL + L    L +  I  DGHC+YRA+E QL       +  N 
Sbjct: 123 AEAEIANLSGARHLESQKLARILAERELQIRQIPSDGHCMYRAIEHQLRERGNDLTVAN- 181

Query: 219 QQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELR 278
             LR   A YM++H+ DFLPF L+ +  G+   Q   E F  YC ++ +T AWGG+LELR
Sbjct: 182 --LRSQTADYMQNHAEDFLPF-LTNSSTGDMYTQ---EEFLKYCTDIVNTPAWGGQLELR 235

Query: 279 ALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 334
           AL+H L+  I +       + +G+EYS+        +I L Y RHA+GLGEHYNSV
Sbjct: 236 ALSHILKTAIEVIQAESSPIVIGEEYSS-------KAITLVYMRHAYGLGEHYNSV 284

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 162/295 (54%), Gaps = 25/295 (8%)

Query: 44  EMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELAS 103
           +++ R R+E  +LQ K   +K A  K  K     ++KQ+ EE+++L A+L +KH +EL  
Sbjct: 17  QLVKRQRREKRELQAKIQGMKNAVPKNDKK----RRKQLAEEVAKLEAELEQKHKEELKQ 72

Query: 104 LGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ---AKPSKGTKRREKRAQQE-AAREQRI 159
           L  +     E++ +D++   VA   +  +  Q    + SK  KRREK+A  E    E+  
Sbjct: 73  LKEAMP---EQNKIDSIADGVANFELEGREQQIQHPRISKAQKRREKKAALEKEREERIA 129

Query: 160 QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQ 219
           + E  N+   R +E +KL   L    L +  I  DGHC+YRA+EDQL       + +   
Sbjct: 130 EAEIENLTGARHLESQKLASLLAARHLEIKQIPSDGHCMYRAIEDQL---KDHHNSWTVA 186

Query: 220 QLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRA 279
            LR   A Y+  H  DFLPF  + N  G+  ++   E FE YC ++ +TAAWGG+LELRA
Sbjct: 187 TLRNQTAKYIHSHFDDFLPFLTNPN-TGDMYSK---EEFEKYCDDIANTAAWGGQLELRA 242

Query: 280 LTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 334
           L+H L+  I +     P + +G+EY       SG  IIL Y RHA+GLGEHYNSV
Sbjct: 243 LSHILQTPIEVVQMDSPSIIVGEEY-------SGKPIILVYMRHAYGLGEHYNSV 290

Gallus gallus (taxid: 9031)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/294 (38%), Positives = 166/294 (56%), Gaps = 26/294 (8%)

Query: 45  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104
           ++ + RKE  ++Q K   +K +  K  K     ++KQ+ E+I++L A++  +H +EL +L
Sbjct: 13  LIKQQRKEKKEVQAKIQCMKNSVPKNDKK----RRKQMTEDIAKLEAEVEARHKEELEAL 68

Query: 105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP--SKGTKRREKRAQQEAAREQRIQE- 161
               +   + S++ N    V  + + S+    +P  SK  KRREK+A QE  R+ RI E 
Sbjct: 69  AQKPTEPTQVSSITN---GVTSLDLGSEEPVQQPRVSKAQKRREKKAAQEKERDDRIAEA 125

Query: 162 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQL 221
           E +N+   R +E +KL + L    L +  I  DGHC+YRA+E QL       +  N   L
Sbjct: 126 EIANLSGARHLESQKLAQILAERELQIRQIPSDGHCMYRAIEHQLNEQGNSLTVAN---L 182

Query: 222 RQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALT 281
           R   A YM+  + DFLPF L+ +  G+   Q   E F+ YC ++ +T AWGG+LELRAL+
Sbjct: 183 RSQTADYMQKRAEDFLPF-LTNSSTGDMYTQ---EEFQKYCTDIVNTPAWGGQLELRALS 238

Query: 282 HCLRKHI-MIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 334
           H L+  I +I + S P V +G+EYSN         I L Y RHA+GLGEHYNSV
Sbjct: 239 HILKTPIEVIQAESLPIV-IGEEYSN-------KPITLVYMRHAYGLGEHYNSV 284

Xenopus laevis (taxid: 8355)

>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1

 Score =  168 bits (425), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 158/288 (54%), Gaps = 25/288 (8%)

Query: 48  RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYS 107
           RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL  L  +
Sbjct: 18  RHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEKEMEQKHREELEQLKLT 73

Query: 108 SSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQEEQSNI 166
           +    +++ +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + E  N+
Sbjct: 74  T----KENKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEIENL 127

Query: 167 VSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVA 226
              R +E EKL + L    L +  I  DGHC+Y+A+EDQL       +      LR   A
Sbjct: 128 TGARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALT---VVALRSQTA 184

Query: 227 AYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRK 286
            YM+ H  DFLPF  + N           E F+ YC+++ +TAAWGG+LELRAL+H L+ 
Sbjct: 185 EYMQSHVEDFLPFLTNPNT----GDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQT 240

Query: 287 HIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 334
            I I     P + +G+EYS          +IL Y RHA+GLGEHYNSV
Sbjct: 241 PIEIIQADSPPIIVGEEYSK-------KPLILVYMRHAYGLGEHYNSV 281

Homo sapiens (taxid: 9606)

>sp|Q8K2H2|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 160/293 (54%), Gaps = 24/293 (8%)

Query: 43  DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 102
           ++++ RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL 
Sbjct: 13  EQLVRRHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEREMEQKHREELE 68

Query: 103 SLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQE 161
            L   +      S +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + 
Sbjct: 69  QLKQLTFKD---SKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEA 123

Query: 162 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQL 221
           E  N+   R +E EKL + L    L +  I  DGHC+Y A+EDQL       +      L
Sbjct: 124 EIENLSGARHLESEKLAQILAARELEIKQIPSDGHCMYGALEDQLREQDCALT---VASL 180

Query: 222 RQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALT 281
           R+  A YM+ HS DFLPF L+    G+       E F  YC ++ +TAAWGG+LELRAL+
Sbjct: 181 RRQTAEYMQTHSDDFLPF-LTNPSTGD---MYTPEEFGKYCDDIVNTAAWGGQLELRALS 236

Query: 282 HCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 334
           H L+  I I     P + +G+EY         + ++L Y RHA+GLGEHYNSV
Sbjct: 237 HILQTPIEILQADAPPIIVGEEYPR-------NPLVLVYMRHAYGLGEHYNSV 282

Mus musculus (taxid: 10090)

>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 156/294 (53%), Gaps = 29/294 (9%)

Query: 45  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104
           ++ RH +E  +LQ     LK +  K  K     ++KQ+  +ISRL A++ ++H +EL   
Sbjct: 11  VIRRHYREKRELQAHIQTLKASVPKNDKG----RRKQMLADISRLEAEMEQRHKQELEKF 66

Query: 105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 164
           G      N  S++D++   +  + +  ++   +P K  KRR++RA QE   ++R+   Q+
Sbjct: 67  G-----ENPDSSVDSVTADLEKMNL--ENMPPRPPKAQKRRDRRAHQERRHQERMPAAQA 119

Query: 165 -NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQ 223
             + ++R  E+EK+   LG   L +  I  DGHC+YRA++DQL            + LR 
Sbjct: 120 EQLAANRREEEEKVAAILGAKNLEMKTIPADGHCMYRAIQDQLVF------SVTIESLRY 173

Query: 224 MVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHC 283
             A YMR H  DFLPF+ +E   G    +   E F  YC ++   A+WGG+LELRAL+H 
Sbjct: 174 RTAYYMRKHIDDFLPFF-TEPEAGNFYTR---EDFLRYCDDIVHNASWGGQLELRALSHV 229

Query: 284 LRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 337
           L+  I +   + P + +G+EY+          + L Y  +A   GEHYNSV PI
Sbjct: 230 LQTPIEVVQANSPTIVIGEEYTR-------KPVTLVYLHYACDFGEHYNSVKPI 276

Mus musculus (taxid: 10090)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 159/298 (53%), Gaps = 38/298 (12%)

Query: 45  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104
           +L RH++E  +LQ +   LK +  K  K     K+KQ+ ++++R+ A++ +KH +EL   
Sbjct: 11  ILRRHQRERQELQAQIRSLKNSVPKTDKT----KRKQLLQDVARMEAEMAQKHRQELEKF 66

Query: 105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQR----IQ 160
                   + S+++++V+ +A + +     + +P + +K   KR + E+   +R     Q
Sbjct: 67  -------QDDSSIESVVEDLAKMNL-----ENRPPRSSKAHRKRERMESEERERQESIFQ 114

Query: 161 EEQS-NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQ 219
            E S ++   +  E+EKL   LG  GL +  I  DGHC+YRA++DQL          + +
Sbjct: 115 AEMSEHLAGFKREEEEKLAAILGARGLEMKAIPADGHCMYRAIQDQLVF------SVSVE 168

Query: 220 QLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRA 279
            LR   A+YM+ H  +FLPF+ +     E S     + F  YC  +  T AWGG+LELRA
Sbjct: 169 MLRCRTASYMKKHVDEFLPFFSNP----ETSDSFGYDDFMIYCDNIVRTTAWGGQLELRA 224

Query: 280 LTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 337
           L+H L+  I +     P + +G+EY           IIL Y R+A+ LGEHYNSV P+
Sbjct: 225 LSHVLKTPIEVIQADSPTLIIGEEYVK-------KPIILVYLRYAYSLGEHYNSVTPL 275

Homo sapiens (taxid: 9606)

>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=otu2 PE=4 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 161/320 (50%), Gaps = 38/320 (11%)

Query: 36  QKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95
           ++K +  +E+LS+ R+E  +LQ+K T L+K   +G+K +++A    ++++IS++ A L +
Sbjct: 19  KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRA----LQQKISQMEADLSQ 74

Query: 96  KHAKELASLGYSSSNGNEKSN---LDNLVKAVAGVTVIS-------------QHDQAKPS 139
           KHA E   L       NE      L+ L++ +    + +             ++   +P 
Sbjct: 75  KHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPK 134

Query: 140 KGTKRREKRAQQEAAREQRIQEE---QSNIVSD-RTVEDEKLEKKLGPLGLTVNDIKPDG 195
           K   R+++R ++  A  +++ E+   +S  ++D +  E +K  K L   GL   DI  DG
Sbjct: 135 KSRNRQKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKILEEAGLVAVDIPADG 194

Query: 196 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 255
           +CL+ ++  QL +        N Q LR   A Y+  H   F  F     ++ EES   +V
Sbjct: 195 NCLFASISHQLNYHHNVK--LNSQALRNKSADYVLKHCEQFEGF-----LLDEESG--EV 245

Query: 256 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSS 315
               +YC E+ + + WG ++E++AL + L   + +Y+   P ++      N  +      
Sbjct: 246 LPVSDYCNEIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKF-----NPSTVKFEKP 300

Query: 316 IILSYHRHAFGLGEHYNSVI 335
           + ++Y++H FGLG HYNS++
Sbjct: 301 LCIAYYQHLFGLGAHYNSLL 320

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 156/324 (48%), Gaps = 41/324 (12%)

Query: 31  SGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLS 90
           +G  S +  E  +++L+RHRKE   LQNK T +KK A        K+K+K+V  +   L 
Sbjct: 2   TGMESGENLENMEDILARHRKENKDLQNKITGMKKQAT-------KSKRKEVNSKCLDLQ 54

Query: 91  AKLREKHAKELASLGYSSSNGNEKSNLDNLV--KAVAGVTV-------ISQHDQAKPSKG 141
            KL+ K   E+     +++   +    D +   K +  +++        +   Q +    
Sbjct: 55  DKLKTKQENEIRDWKIANNEVFDAEQEDEVTPEKLLEQLSISRDEKEQQNVPVQQQQQGQ 114

Query: 142 TKRREKRAQQEAAREQ----RIQEEQSNIVSD----RTVEDEKLEKKLGPLGLTVNDIKP 193
           TK+R  R ++  A+      +++EE +   S     + +E E +++      L   DI+P
Sbjct: 115 TKKRRNRQKERLAKRDAAIAKMKEEAALEASKQPDLKKMEQESIDQLCELKKLKQFDIQP 174

Query: 194 DGHCLYRAVEDQLAHLSGGAS---PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEES 250
           DGHCL+ ++ DQL             +  +LR +   Y+++H  DF+P+   E  +    
Sbjct: 175 DGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETM---- 230

Query: 251 AQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSD 310
              +++  + Y KE+E TA WGGE+E+ AL+H     I I     P +++   Y+  G  
Sbjct: 231 ---KMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRP-IQV---YNECG-- 281

Query: 311 SSGSSIILSYHRHAFGLGEHYNSV 334
                + L Y++H++ LGEHYNS+
Sbjct: 282 -KNPELKLVYYKHSYALGEHYNSL 304

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
255571935	325	OTU domain-containing protein 6B, putati	0.946	0.981	0.771	1e-135
449436806	319	PREDICTED: OTU domain-containing protein	0.946	1.0	0.736	1e-135
224131236	326	predicted protein [Populus trichocarpa]	0.952	0.984	0.745	1e-134
449520871	325	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.893	0.926	0.759	1e-134
357511169	335	OTU domain-containing protein 6B [Medica	0.982	0.988	0.720	1e-131
388521917	326	unknown [Medicago truncatula]	0.893	0.923	0.754	1e-131
356505520	324	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.952	0.990	0.743	1e-129
363807892	324	uncharacterized protein LOC100780620 [Gl	0.952	0.990	0.730	1e-129
225436773	325	PREDICTED: OTU domain-containing protein	0.946	0.981	0.752	1e-124
89953403	327	Fgenesh protein 81 [Beta vulgaris]	0.952	0.981	0.738	1e-124

>gi|255571935|ref|XP_002526909.1| OTU domain-containing protein 6B, putative [Ricinus communis] gi|223533728|gb|EEF35462.1| OTU domain-containing protein 6B, putative [Ricinus communis]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/320 (77%), Positives = 283/320 (88%), Gaps = 1/320 (0%)

Query: 18  DTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKA 77
           DTQ IEETP EA   +ASQK+QE RDEMLSRHRKEI+QLQNKE ELKKAAAKGSKAEQK+
Sbjct: 2   DTQVIEETPFEAIQTNASQKQQEARDEMLSRHRKEIAQLQNKEIELKKAAAKGSKAEQKS 61

Query: 78  KKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAK 137
           KKKQVEE+IS+LSAKL+EKHA+ELASLGY+S  GNEKSNLDNLVKA+AGV+V +Q + AK
Sbjct: 62  KKKQVEEQISQLSAKLKEKHAEELASLGYNSITGNEKSNLDNLVKAIAGVSVTNQPELAK 121

Query: 138 PSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHC 197
            SKG KRR KRAQQEA REQRIQEEQSN+VSDR +E+EKL+ KL PLGLTVNDIKPDGHC
Sbjct: 122 VSKGAKRRGKRAQQEAEREQRIQEEQSNLVSDRLIENEKLKGKLEPLGLTVNDIKPDGHC 181

Query: 198 LYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVER 257
           LYRA+EDQL+ LSGG+SPY +Q LR+MVAAYMR+H+SDFLPF+LS+N I  +S  S  +R
Sbjct: 182 LYRAIEDQLSVLSGGSSPYTYQDLRKMVAAYMREHASDFLPFFLSDNTIEGDSDDSLADR 241

Query: 258 FENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN-GGSDSSGSSI 316
           FENYCKEVEST+AWGG+LEL ALTHCL KHI I+SGSFPDVEMGKEY N  G+ SS +SI
Sbjct: 242 FENYCKEVESTSAWGGQLELGALTHCLTKHIKIFSGSFPDVEMGKEYKNDDGAGSSNTSI 301

Query: 317 ILSYHRHAFGLGEHYNSVIP 336
           +LSYH+HAFGLGEHYNSV+P
Sbjct: 302 LLSYHKHAFGLGEHYNSVVP 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436806|ref|XP_004136183.1| PREDICTED: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/322 (73%), Positives = 280/322 (86%), Gaps = 3/322 (0%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 75
           M DTQ+ E+T S      ASQ+  E+RDEMLS  RKEISQLQNKE ELKKAAA+GSKAEQ
Sbjct: 1   MEDTQQTEDTSSGTVPDKASQENHESRDEMLSLCRKEISQLQNKEIELKKAAARGSKAEQ 60

Query: 76  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 135
           K KKKQVEEEIS+LS KL++K A+ELASLG+S+SNGNEK N+DNLVKA+AGV++ +Q D 
Sbjct: 61  KVKKKQVEEEISQLSVKLKKKQAEELASLGFSNSNGNEK-NIDNLVKAIAGVSMAAQSDH 119

Query: 136 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 195
           +KPSK T+R+EKRAQQEA R++RI+EEQSNIVSDR +E+E LEKKL PLGLTVN+IKPDG
Sbjct: 120 SKPSKSTRRKEKRAQQEAERDRRIEEEQSNIVSDRMIENEHLEKKLEPLGLTVNEIKPDG 179

Query: 196 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 255
           HCLYRAVE+QLA+LSGG+SPYN+QQLR+MVAAYMRDHS+D++PF+LS+N +   S  S  
Sbjct: 180 HCLYRAVENQLAYLSGGSSPYNYQQLREMVAAYMRDHSTDYMPFFLSDNGVEGNSNSSLA 239

Query: 256 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSS 315
           ERFENYCKEVESTAAWGG+LEL ALTHCLRKHIMI+SGSFPDVEMGKEY + G  +  SS
Sbjct: 240 ERFENYCKEVESTAAWGGQLELGALTHCLRKHIMIFSGSFPDVEMGKEYKSEGVIN--SS 297

Query: 316 IILSYHRHAFGLGEHYNSVIPI 337
           I LSYH+HAFGLGEHYNSV+P+
Sbjct: 298 IRLSYHKHAFGLGEHYNSVVPV 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131236|ref|XP_002321034.1| predicted protein [Populus trichocarpa] gi|222861807|gb|EEE99349.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/322 (74%), Positives = 286/322 (88%), Gaps = 1/322 (0%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 75
           M+D QEI++ P+EA   + SQK++E+RDEMLSRHRKEI QLQNKE E+KKAAAKGSKAEQ
Sbjct: 1   MSDAQEIQDQPTEAIPANVSQKEEESRDEMLSRHRKEIRQLQNKEIEMKKAAAKGSKAEQ 60

Query: 76  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 135
           KAKKK VEEE+S+LSAKL+EKHA+ELASLGY+S+NGNE SNLDNLVKAVAGV+V +Q + 
Sbjct: 61  KAKKKLVEEEVSQLSAKLKEKHAEELASLGYNSTNGNESSNLDNLVKAVAGVSVTNQPEH 120

Query: 136 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 195
           +KPSK  KRR KRAQQEA REQRIQEEQSN+ SDR +EDEKLE+KL PLGLT+N+IKPDG
Sbjct: 121 SKPSKSAKRRGKRAQQEAEREQRIQEEQSNLESDRMIEDEKLERKLEPLGLTINEIKPDG 180

Query: 196 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 255
           HCLYRAVEDQLA LSGG++PY++Q+LR++VAAYMR++S DFLPF+LS+ +  E S  S  
Sbjct: 181 HCLYRAVEDQLALLSGGSAPYDYQELRKLVAAYMRENSPDFLPFFLSDTITEEHSDHSLS 240

Query: 256 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGS 314
           +RFENYCKEVEST AWGG+LEL ALTHCLR+HI I+SGSFPDVEMGKEY S+GG+ SS +
Sbjct: 241 DRFENYCKEVESTTAWGGQLELGALTHCLRRHIKIFSGSFPDVEMGKEYKSDGGAGSSNA 300

Query: 315 SIILSYHRHAFGLGEHYNSVIP 336
           SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 SIMLSYHKHAFGLGEHYNSVVP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520871|ref|XP_004167456.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/304 (75%), Positives = 272/304 (89%), Gaps = 3/304 (0%)

Query: 34  ASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 93
           ASQ+  E+RDEMLSRHRKEISQLQNKE ELKKAAA+GSKAEQK K KQVEEEIS+LS KL
Sbjct: 25  ASQENHESRDEMLSRHRKEISQLQNKEIELKKAAARGSKAEQKVKXKQVEEEISQLSVKL 84

Query: 94  REKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEA 153
           ++K A+ELASLG+S+SNGNEK N+DNLVKA+AGV++ +Q D +KPSK T+R+EKRAQQEA
Sbjct: 85  KKKQAEELASLGFSNSNGNEK-NIDNLVKAIAGVSMAAQSDHSKPSKSTRRKEKRAQQEA 143

Query: 154 AREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGA 213
            R++RI+EEQSNIVSDR +E+E LEKKL PLGLTVN+IKPDGHCLYRAVE+QLA+LSGG+
Sbjct: 144 ERDRRIEEEQSNIVSDRMIENEHLEKKLEPLGLTVNEIKPDGHCLYRAVENQLAYLSGGS 203

Query: 214 SPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGG 273
           SPYN+QQLR+MVAAYMRDHS+D++PF+LS+N +   S  S  ERFENYCKEVESTAAWGG
Sbjct: 204 SPYNYQQLREMVAAYMRDHSTDYMPFFLSDNGVEGNSNSSLAERFENYCKEVESTAAWGG 263

Query: 274 ELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 333
           +LEL ALTHCLRKHIMI+SGSFPDVEMGKEY + G  +  SSI LSYH+HAFGLGEHYNS
Sbjct: 264 QLELGALTHCLRKHIMIFSGSFPDVEMGKEYKSEGVIN--SSIRLSYHKHAFGLGEHYNS 321

Query: 334 VIPI 337
           V+P+
Sbjct: 322 VVPV 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511169|ref|XP_003625873.1| OTU domain-containing protein 6B [Medicago truncatula] gi|355500888|gb|AES82091.1| OTU domain-containing protein 6B [Medicago truncatula]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/333 (72%), Positives = 282/333 (84%), Gaps = 2/333 (0%)

Query: 7   LSTLILGTQMADTQEIEETPSEAHSGDASQ-KKQETRDEMLSRHRKEISQLQNKETELKK 65
           ++T+I    M DTQE+EE   E  S   S+ K++ETRDE+L+RHRKEISQLQ KE E+KK
Sbjct: 1   MTTVIKVVPMEDTQEVEEVQEEVISDKTSENKEEETRDEILARHRKEISQLQKKEVEMKK 60

Query: 66  AAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVA 125
            AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK AKEL++LGYSS  GNEKSN+DNLVKA+A
Sbjct: 61  QAARGSKAEQKAKKRQVEEEVSQLSAKLKEKQAKELSALGYSSGIGNEKSNMDNLVKAIA 120

Query: 126 GVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLG 185
           GV+V SQ +  K SK  +RR+KRAQQEA REQRIQ EQ++ +SDRTVE+EKLE+KL PLG
Sbjct: 121 GVSVSSQPENTKVSKAKQRRDKRAQQEAEREQRIQAEQNDNISDRTVENEKLERKLKPLG 180

Query: 186 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENM 245
           LTV +IKPDGHCLYRAVE+QLAHL GG SPY FQQLR+M AAYMR H+SDFLPF LSEN+
Sbjct: 181 LTVCEIKPDGHCLYRAVENQLAHLFGGKSPYTFQQLREMAAAYMRKHTSDFLPFCLSENL 240

Query: 246 IGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY- 304
           I  +S +S  ++FENYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY 
Sbjct: 241 IEGDSDESIAQKFENYCKEVESTAIWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYK 300

Query: 305 SNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 337
           S  G  SSGSSI+LSYH HAFGLGEHYNSV+PI
Sbjct: 301 SADGIGSSGSSIMLSYHMHAFGLGEHYNSVVPI 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521917|gb|AFK49020.1| unknown [Medicago truncatula]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/302 (75%), Positives = 265/302 (87%), Gaps = 1/302 (0%)

Query: 37  KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 96
           K++ETRDE+L+RHRKEISQLQ KE E+KK AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK
Sbjct: 23  KEEETRDEILARHRKEISQLQKKEVEMKKQAARGSKAEQKAKKRQVEEEVSQLSAKLKEK 82

Query: 97  HAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE 156
            AKEL++LGYSS  GNEKSN+DNLVKA+AGV+V SQ +  K SK  +RR+KRAQQEA RE
Sbjct: 83  QAKELSALGYSSGIGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAERE 142

Query: 157 QRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPY 216
           QRIQ EQ++I+SDRTVE+EKLE+KL PLGLTV +IKPDGHCLYRAVE+QLAHL GG SPY
Sbjct: 143 QRIQAEQNDIISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPY 202

Query: 217 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELE 276
            FQQLR+M AAYM  H+SDFLPF LSEN+I  +S +S  ++FENYCKEVESTA WGG+LE
Sbjct: 203 TFQQLREMAAAYMMKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLE 262

Query: 277 LRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 335
           L ALTHCL+KHIMI+SGSFPDVEMGKEY S  G  SSGSSI+LSYH HAFGLGEHYNSV+
Sbjct: 263 LGALTHCLKKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVV 322

Query: 336 PI 337
           PI
Sbjct: 323 PI 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505520|ref|XP_003521538.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Glycine max]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/323 (74%), Positives = 279/323 (86%), Gaps = 2/323 (0%)

Query: 16  MADTQEIEETPSEAHSGDAS-QKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAE 74
           M DTQEIEE   E    D + +K+QET DE LSRHRKEI QLQ KE E+KKAAA+GSKAE
Sbjct: 1   MEDTQEIEEQGHEEVISDKTFKKQQETLDEXLSRHRKEILQLQKKEVEMKKAAARGSKAE 60

Query: 75  QKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD 134
           QKAKKKQVEEE+S+LSAKL+E  AKELA+LGY+SSNGNEKSNLD+LVKA+AGV+V SQ +
Sbjct: 61  QKAKKKQVEEEVSQLSAKLKENQAKELAALGYNSSNGNEKSNLDSLVKAIAGVSVASQPE 120

Query: 135 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD 194
             K SK  +RREKRAQQEA REQRIQ EQS+I+SDR +E+EKLEKKL PLGLTV +IKPD
Sbjct: 121 HTKVSKAKQRREKRAQQEAEREQRIQSEQSDIISDRMIENEKLEKKLKPLGLTVCEIKPD 180

Query: 195 GHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 254
           GHCLYRAVEDQLA LSGG SPY +Q LR+MVAAYMR+H+SDFLPF+LSEN+I ++S +S 
Sbjct: 181 GHCLYRAVEDQLALLSGGRSPYTYQDLREMVAAYMRNHTSDFLPFFLSENLIEDDSDESP 240

Query: 255 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSG 313
            ++FENYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY S+GG+  S 
Sbjct: 241 AQKFENYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDGGAGMSN 300

Query: 314 SSIILSYHRHAFGLGEHYNSVIP 336
            SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 LSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807892|ref|NP_001242191.1| uncharacterized protein LOC100780620 [Glycine max] gi|255641250|gb|ACU20902.1| unknown [Glycine max]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/323 (73%), Positives = 277/323 (85%), Gaps = 2/323 (0%)

Query: 16  MADTQEIEETP-SEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAE 74
           M DTQEIEE    E  S   S+K+QET DE+LSRHRKEI QLQ KE E+KKA A+GSKAE
Sbjct: 1   MEDTQEIEEQAHKEVISDKTSEKQQETLDEILSRHRKEILQLQKKEVEMKKATARGSKAE 60

Query: 75  QKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD 134
           QKAKKKQVEEE+ +LSAKL+E HAKEL +LGY S NGNEKSNLD+LVKA+AGV+V SQ +
Sbjct: 61  QKAKKKQVEEEVCQLSAKLKENHAKELTALGYISGNGNEKSNLDSLVKAIAGVSVTSQPE 120

Query: 135 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD 194
             K SK  +RR+KRAQQEA REQRIQ EQS+I+SDR +E+EKLEKKL PLGLTV +IKPD
Sbjct: 121 HTKVSKAKQRRDKRAQQEAEREQRIQAEQSDIISDRVIENEKLEKKLKPLGLTVCEIKPD 180

Query: 195 GHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 254
           GHCLYRA+EDQLA LSGG SPY +Q+LR+MVAAYMR+H+SDFLPF+LSEN+I ++S +S 
Sbjct: 181 GHCLYRAIEDQLAILSGGRSPYTYQELREMVAAYMRNHTSDFLPFFLSENLIEDDSNESF 240

Query: 255 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSG 313
            ++F NYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY S+GG+  S 
Sbjct: 241 AQKFGNYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDGGTGLSN 300

Query: 314 SSIILSYHRHAFGLGEHYNSVIP 336
           SSI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 SSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436773|ref|XP_002267732.1| PREDICTED: OTU domain-containing protein 6B isoform 2 [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/323 (75%), Positives = 276/323 (85%), Gaps = 4/323 (1%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 75
           M DTQE +  P E    D  +KK+ET DEMLSRHRKEISQLQNKE  +KKAAAKGSKAEQ
Sbjct: 1   MEDTQEKDGKPPEEFPEDTHEKKRETLDEMLSRHRKEISQLQNKEAAMKKAAAKGSKAEQ 60

Query: 76  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 135
           KAKKKQVE+EIS+LS+ L+EK A ELAS+GYSS +G EKSNLDNLVKA+AGV+V SQ + 
Sbjct: 61  KAKKKQVEDEISQLSSDLKEKQAAELASIGYSSGSGKEKSNLDNLVKAIAGVSVTSQAEH 120

Query: 136 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 195
           ++PSK  KRREKRAQQEAAREQRIQEEQSNIVSDR +E+E LEKKL PLGL VNDIKPDG
Sbjct: 121 SRPSKSAKRREKRAQQEAAREQRIQEEQSNIVSDRMIENEILEKKLEPLGLAVNDIKPDG 180

Query: 196 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 255
           HCLYRAVEDQLA LSGG+SPY +Q+LR+MVAAYMR H+SDFLPF+LSE     +S  S  
Sbjct: 181 HCLYRAVEDQLALLSGGSSPYTYQELREMVAAYMRKHASDFLPFFLSETE--GDSDISLA 238

Query: 256 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN--GGSDSSG 313
           ERFENYCKE+ESTAAWGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY +  G +D+S 
Sbjct: 239 ERFENYCKEIESTAAWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDVGRTDTSN 298

Query: 314 SSIILSYHRHAFGLGEHYNSVIP 336
            SI+LSYH+HAFGLGEHYNSVIP
Sbjct: 299 QSIMLSYHKHAFGLGEHYNSVIP 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89953403|gb|ABD83295.1| Fgenesh protein 81 [Beta vulgaris]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/325 (73%), Positives = 276/325 (84%), Gaps = 4/325 (1%)

Query: 16  MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 75
           M  + EIE   ++ +  DAS KKQETRDEMLSRHRKEI QLQNKE E+KKAAAKGSKAEQ
Sbjct: 1   MEHSSEIEVLVAQENFSDASVKKQETRDEMLSRHRKEIGQLQNKEIEMKKAAAKGSKAEQ 60

Query: 76  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSS---NGNEKSNLDNLVKAVAGVTVISQ 132
           KAKKKQVEEEI++LSAKL+EKHA+EL+SLGY SS   +GN++ NLD LVKA+AGV+V S 
Sbjct: 61  KAKKKQVEEEIAKLSAKLKEKHAQELSSLGYISSSKVDGNDRGNLDTLVKAIAGVSVASA 120

Query: 133 -HDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDI 191
            ++  KPSK  KRREKRAQ+EAAREQRI+EEQS+IVSDRTVE+E LEKKLGPLGLT+ ++
Sbjct: 121 ANNNHKPSKSVKRREKRAQEEAAREQRIKEEQSSIVSDRTVENELLEKKLGPLGLTIYEV 180

Query: 192 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESA 251
           KPDGHCLYRAVEDQL HLS G+SPYNFQQLR+MVA+YMRDH+ DFLPF+ SEN +  ES 
Sbjct: 181 KPDGHCLYRAVEDQLVHLSRGSSPYNFQQLREMVASYMRDHAFDFLPFFTSENAVEGESD 240

Query: 252 QSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDS 311
            S  +RFE+YCKEVESTAAWGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY      S
Sbjct: 241 DSLSQRFESYCKEVESTAAWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKIDDDAS 300

Query: 312 SGSSIILSYHRHAFGLGEHYNSVIP 336
             S I LSYHRHAFGLGEHYNSV+P
Sbjct: 301 LSSCIKLSYHRHAFGLGEHYNSVVP 325

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.934	0.948	0.512	1.6e-79
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.821	0.945	0.332	1e-29
MGI|MGI:1919451	294	Otud6b "OTU domain containing	0.810	0.928	0.281	3.5e-27
DICTYBASE|DDB_G0279375	340	DDB_G0279375 "OTU domain conta	0.474	0.470	0.355	3.1e-26
MGI|MGI:3644685	290	Otud6a "OTU domain containing	0.676	0.786	0.296	6.8e-24
CGD|CAL0002605	323	orf19.1959 [Candida albicans (	0.465	0.486	0.305	1.6e-21
UNIPROTKB|G4NEZ8	304	MGG_11505 "Uncharacterized pro	0.617	0.684	0.267	4.1e-21
SGD|S000001005	307	OTU2 "Protein of unknown funct	0.388	0.426	0.324	2.2e-20
POMBASE|SPAC1952.03	324	otu2 "ubiquitin specific cyste	0.836	0.870	0.234	5.2e-13
ASPGD|ASPL0000026973	340	AN5638 [Emericella nidulans (t	0.424	0.420	0.303	3.8e-12

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 169/330 (51%), Positives = 211/330 (63%)

Query:    16 MADTQEIEETPSEAHSGDASQKKQ-ETRDEMLSRHRKEISQLQNKETXXXXXXXXXXXXX 74
             MAD +  E   SE    DASQ++Q ET +EML+RHR+EI QLQNKET             
Sbjct:     1 MADNKTSEGIVSEETPMDASQEQQHETVEEMLARHRQEIKQLQNKETEMKKAAAKGSKAE 60

Query:    75 XXXXXXXXXXXISRLSAKLREKHAKELASLGYSSSNGN---------EKSNLDNLVKAVA 125
                        IS+LS KL++K  KELAS G+SSS+ N         +K ++D LV+A+A
Sbjct:    61 QKAKKKQVEDDISKLSTKLKDKQLKELASQGFSSSSSNNIAKDETTEKKGDIDTLVRAIA 120

Query:   126 GVTVISQHDQAKPSKGTKXXXXXXXXXXXXXXXXXXXXSNIVSDRTVEDXXXXXXXXXXX 185
             GV+V +Q + +KPSK  K                    S++ SDR VE+           
Sbjct:   121 GVSVTAQQEHSKPSKSVKRREKRAKEEADREQRIKEEQSHVKSDRMVENAKLEKKLKPLG 180

Query:   186 XTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENM 245
              TV++IKPDGHCLYRAVE+QLA+ SGGASPY +Q LR+M A+YMR+H +DFLPF+LSE  
Sbjct:   181 LTVSEIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYMREHKTDFLPFFLSETE 240

Query:   246 IGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYX 305
              G+ ++ S  ERFE YC+EVESTAAWG +LEL ALTHCLRKHI +YSGSFPDVEMGKEY 
Sbjct:   241 -GDSNSGSAEERFEKYCREVESTAAWGSQLELGALTHCLRKHIKVYSGSFPDVEMGKEYR 299

Query:   306 XXXXXXXXXXIILSYHRHAFGLGEHYNSVI 335
                       ++LSYHRHAFGLGEHYNSV+
Sbjct:   300 SGDDSS----LMLSYHRHAFGLGEHYNSVV 325

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 100/301 (33%), Positives = 134/301 (44%)

Query:    40 ETRDEMLSR-HRKEISQLQNKETXXXXXXXXXXXXXXXXXXXXXXXXISRLSAKLREKHA 98
             ET +E L++ HRKE   LQ K                          I++L A+L +KH 
Sbjct:     5 ETAEEQLAKQHRKEKKDLQAK----IQSMKNAVPKNDKKRRKQLTEDIAKLEAELSQKHE 60

Query:    99 KELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD-QAKPSKGTKXXXXXXXXXXXXXX 157
              EL  L  +SS       LD++  +VA     S    Q++ SK  K              
Sbjct:    61 NEL-KLQNTSSVEEVSDALDSM--SVANHEEQSDPSKQSRTSKAQKRRDKKAALEKEREM 117

Query:   158 XXXXXX-SNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLAHLSGGASPY 216
                     N+   R  E              + +I  DGHC+YRAVE QL    G A   
Sbjct:   118 RIAEAEVENLSGSRHQEGLKLREKLVERHLQIKEISSDGHCMYRAVEHQLTE-RGLA--L 174

Query:   217 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELE 276
               ++LR   A YMR H+ DF+PF  + N  G+       E FE YC +V  TAAWGG+LE
Sbjct:   175 GLKELRDQTAQYMRSHADDFMPFLTNPNT-GD---MYTAEEFEKYCSDVADTAAWGGQLE 230

Query:   277 LRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSVIP 336
             L+AL+  L+  I +     P + +G+EY           I L Y RHA+GLGEHYNSV P
Sbjct:   231 LKALSQVLQLPIEVIQADSPCITIGEEYDKPK-------ITLIYMRHAYGLGEHYNSVEP 283

Query:   337 I 337
             +
Sbjct:   284 L 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 83/295 (28%), Positives = 132/295 (44%)

Query:    40 ETRDEMLSRHRKEISQLQNKETXXXXXXXXXXXXXXXXXXXXXXXXISRLSAKLREKHAK 99
             +  ++++ RHRKE  +LQ K                          +++L  ++ +KH +
Sbjct:    10 DDEEQLVRRHRKEKKELQAK----IQGMKNAVPKNDKKRRKQLTEDVAKLEREMEQKHRE 65

Query:   100 ELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKXXXXXXXXXXXXXXXX 159
             EL  L   +    + S +D++   ++ + + +Q  +   ++  +                
Sbjct:    66 ELEQLKQLTF---KDSKIDSVAVNISNLVLENQPPRISKAQ-KRREKKAALEKEREERIA 121

Query:   160 XXXXSNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQ 219
                  N+   R +E              +  I  DGHC+Y A+EDQL       +     
Sbjct:   122 EAEIENLSGARHLESEKLAQILAARELEIKQIPSDGHCMYGALEDQLREQDCALT---VA 178

Query:   220 QLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRA 279
              LR+  A YM+ HS DFLPF L+    G+       E F  YC ++ +TAAWGG+LELRA
Sbjct:   179 SLRRQTAEYMQTHSDDFLPF-LTNPSTGDMYTP---EEFGKYCDDIVNTAAWGGQLELRA 234

Query:   280 LTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 334
             L+H L+  I I     P + +G+EY           ++L Y RHA+GLGEHYNSV
Sbjct:   235 LSHILQTPIEILQADAPPIIVGEEYPRNP-------LVLVYMRHAYGLGEHYNSV 282

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279375 DDB_G0279375 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 252 (93.8 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 63/177 (35%), Positives = 98/177 (55%)

Query:   165 NIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLA---HLSGGASPYNFQQL 221
             N VS   +E             TV  I PDG CLY+A+ +QL     ++   S    ++L
Sbjct:   175 NHVSKGVIEMNDFLAKLKPLNKTVKFIPPDGDCLYQAITNQLLINKDINEEESKSYAKKL 234

Query:   222 RQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRAL 280
             R + + Y++++  +FLPF +SE    +E + ++ +  + YC+E V +   WGG +EL+AL
Sbjct:   235 RTIASDYIKNNRDEFLPFIISE----DEYSTAE-DPIQEYCQEQVLTIGKWGGHIELKAL 289

Query:   281 THCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSVIPI 337
             +  L+K I I++    D+ +G+E+           I L+YHRHAF LGEHYNS IPI
Sbjct:   290 SQSLKKVITIFNAYSNDIIIGEEFTNP--------IYLTYHRHAFTLGEHYNSAIPI 338

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 75/253 (29%), Positives = 115/253 (45%)

Query:    86 ISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKXX 145
             ISRL A++ ++H +EL   G      N  S++D++   +  + +  ++   +P K  K  
Sbjct:    48 ISRLEAEMEQRHKQELEKFGE-----NPDSSVDSVTADLEKMNL--ENMPPRPPKAQKRR 100

Query:   146 XXXXXXXXXXXXXX-XXXXSNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVED 204
                                  + ++R  E+             +  I  DGHC+YRA++D
Sbjct:   101 DRRAHQERRHQERMPAAQAEQLAANRREEEEKVAAILGAKNLEMKTIPADGHCMYRAIQD 160

Query:   205 QLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE 264
             QL            + LR   A YMR H  DFLPF+ +E   G    +   E F  YC +
Sbjct:   161 QLVF------SVTIESLRYRTAYYMRKHIDDFLPFF-TEPEAGNFYTR---EDFLRYCDD 210

Query:   265 VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHA 324
             +   A+WGG+LELRAL+H L+  I +   + P + +G+EY           + L Y  +A
Sbjct:   211 IVHNASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEYTRKP-------VTLVYLHYA 263

Query:   325 FGLGEHYNSVIPI 337
                GEHYNSV PI
Sbjct:   264 CDFGEHYNSVKPI 276

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]

 Score = 213 (80.0 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 55/180 (30%), Positives = 87/180 (48%)

Query:   164 SNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLA-------HL--SGGAS 214
             SN V  R +E                +IKPDGHCL+ +++DQL        HL  +G   
Sbjct:   155 SNTVDYRQIEIESMDKLLSLNNLQSFEIKPDGHCLFASIQDQLKVRHQDVEHLDHNGPED 214

Query:   215 PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGE 274
               +  QLR++   Y++ +  DF+PF + EN  GE      +   ++Y  E+ +TA WG +
Sbjct:   215 VPSIDQLRKLAGDYIKSNQEDFIPFLIDENT-GE------LRDLDDYINELTTTAMWGSD 267

Query:   275 LELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 334
             +E+ AL+      I IY      + + +             + L Y++H+FGLGEHYNS+
Sbjct:   268 MEILALSKVFNCPISIYMAGASTLTINEH-------GQLPELKLGYYKHSFGLGEHYNSL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

UNIPROTKB|G4NEZ8 MGG_11505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 204 (76.9 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 64/239 (26%), Positives = 99/239 (41%)

Query:   105 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKXXXXXXXXXXXXXXXXXXXXS 164
             G S +  NEK +++     V G          K ++  +                    S
Sbjct:    84 GESQAPSNEKESVE-----VGGTQPPQNQAGKKRNRQKERLARRAAEQEAAAEAAAAEAS 138

Query:   165 NIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLAHLS------GGASPYN- 217
             N+V  R+ E                +I PDGHCL+ A  DQL+ LS       GA   + 
Sbjct:   139 NMVDHRSNEAAHMARELATHSLVEKEIAPDGHCLFSAFADQLSTLSIPLQQKSGAGDDSV 198

Query:   218 --FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGEL 275
               ++ +R+  ++Y+ DH+ DF PF L E +             ++Y +++  TA WGG +
Sbjct:   199 PAYRIVRRAASSYISDHADDFAPF-LEEPL-------------DDYVRKMRDTAEWGGHM 244

Query:   276 ELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 334
             EL AL       + + +     V   KE            + L+Y+RH FGLGEHYNS+
Sbjct:   245 ELLALASTYNVEVRVIADGRTAVVQPKE---PKEDEPARQVWLAYYRHGFGLGEHYNSL 300

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

SGD|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 197 (74.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 48/148 (32%), Positives = 78/148 (52%)

Query:   190 DIKPDGHCLYRAVEDQLA--HLSGGASP-YNFQQLRQMVAAYMRDHSSDFLPFYLSENMI 246
             DI+PDGHCL+ ++ DQL   H         +  +LR +   Y+++H  DF+P+   E  +
Sbjct:   171 DIQPDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETM 230

Query:   247 GEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXX 306
                    +++  + Y KE+E TA WGGE+E+ AL+H     I I     P +++  E   
Sbjct:   231 -------KMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRP-IQVYNECGK 282

Query:   307 XXXXXXXXXIILSYHRHAFGLGEHYNSV 334
                      + L Y++H++ LGEHYNS+
Sbjct:   283 NPE------LKLVYYKHSYALGEHYNSL 304

GO:0008150 "biological_process" evidence=ND

GO:0005840 "ribosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

POMBASE|SPAC1952.03 otu2 "ubiquitin specific cysteine protease, OTU family, Otu2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 186 (70.5 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 75/320 (23%), Positives = 128/320 (40%)

Query:    36 QKKQETRDEMLSRHRKEISQLQNKETXXXXXXXXXXXXXXXXXXXXXXXXISRLSAKLRE 95
             ++K +  +E+LS+ R+E  +LQ+K T                        IS++ A L +
Sbjct:    19 KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQK----ISQMEADLSQ 74

Query:    96 KHAKELASL--GYSSSNGNEKSNLDN-LVKAVAGVTVISQH---------------DQAK 137
             KHA E   L  G   +N  ++ +L N L++ +    + +                  Q K
Sbjct:    75 KHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPK 134

Query:   138 PSKGT-KXXXXXXXXXXXXXXXXXXXXSNIVSDRTVEDXXXXXXXXXXXXTVN-DIKPDG 195
              S+   K                    S  ++D   E+             V  DI  DG
Sbjct:   135 KSRNRQKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKILEEAGLVAVDIPADG 194

Query:   196 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 255
             +CL+ ++  QL +        N Q LR   A Y+  H   F  F L E     ES +  V
Sbjct:   195 NCLFASISHQLNYHHN--VKLNSQALRNKSADYVLKHCEQFEGFLLDE-----ESGE--V 245

Query:   256 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXX 315
                 +YC E+ + + WG ++E++AL + L   + +Y+   P ++                
Sbjct:   246 LPVSDYCNEIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKFNPS-----TVKFEKP 300

Query:   316 IILSYHRHAFGLGEHYNSVI 335
             + ++Y++H FGLG HYNS++
Sbjct:   301 LCIAYYQHLFGLGAHYNSLL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IDA

ASPGD|ASPL0000026973 AN5638 [Emericella nidulans (taxid:162425)]

 Score = 160 (61.4 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
 Identities = 47/155 (30%), Positives = 72/155 (46%)

Query:   190 DIKPDGHCLYRAVEDQLAHLSGGASPYNFQ-------QLRQMVAAYMRDHSSDFLPFYLS 242
             +I PDGHCL+ AV  QL  L  G  P   +       Q R    A  + H        ++
Sbjct:   184 EINPDGHCLFSAVATQLDELGLGLRPDPSRIVIGPTTQTRIDTVASPK-HDGYRAVRAVT 242

Query:   243 ENMIGEESAQSQV---ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVE 299
              + I E   + +    E  E+Y ++++ TA WGG+LEL+A+       I +  G    +E
Sbjct:   243 ADFIAEHKDEFEPFMEEPLESYTRKIKLTAEWGGQLELQAIARAYGVDINVVQGD-GRIE 301

Query:   300 MGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 334
               +             I L+Y+RH +GLGEHYN++
Sbjct:   302 KIEAGDVEEEERAKRVIWLAYYRHTYGLGEHYNAL 336

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZIP6	OTU6B_CHICK	No assigned EC number	0.3762	0.8011	0.8940	yes	no
Q7ZV00	OTU6B_DANRE	No assigned EC number	0.3921	0.8071	0.9283	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	1e-26
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	4e-13
pfam10275	237	pfam10275, Peptidase_C65, Peptidase C65 Otubain	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score =  101 bits (253), Expect = 1e-26
 Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 19/141 (13%)

Query: 192 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESA 251
             DG+CL+ AV DQL             +LR+ V  Y+R++  DF  F            
Sbjct: 1   PGDGNCLFHAVSDQL---GDAGRQELHDELREAVVEYLRENREDFEKFLE---------- 47

Query: 252 QSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG-KEYSNGGSD 310
               E    Y K +    AWGG +E+ AL H LR  I++Y      + +  K Y      
Sbjct: 48  ----EDENEYYKWISKDGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPL 103

Query: 311 SSGSSIILSYHRHAFGLGEHY 331
           +    I LSY       G HY
Sbjct: 104 NKKPVIRLSYLGLE-YTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 56/319 (17%), Positives = 110/319 (34%), Gaps = 41/319 (12%)

Query: 35  SQKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 93
           +Q   ET  + +  + R E+  LQ K T + K    G         +++  +   LS  L
Sbjct: 6   TQAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP------PQRLNGKCLDLSYAL 59

Query: 94  REKHAKEL--ASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD----------QAKPSKG 141
            +K   E+  A    + +N  ++ +    ++ +  + + S             +  P + 
Sbjct: 60  SQKDEVEIEKAPKLRAETNEADQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQD 119

Query: 142 TKRREKRAQQEAAREQRI---QEEQSNIVSDRTVE--DEKLEK--KLGPLGLTVNDIKPD 194
              R  +A++ + R+  +   +E  S  V           LE         +   D + D
Sbjct: 120 DNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGD 179

Query: 195 GHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 254
           G      + DQL             + R     Y++  S  F   +        +     
Sbjct: 180 GCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHF-------DEETLA 232

Query: 255 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGS 314
           +  ++ Y  EV   A+ G  +E++ L   L+      + + P +    + +  G+   G 
Sbjct: 233 MVLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSI----KCNICGTGFVGE 288

Query: 315 SIILSYHRHAFGLGEHYNS 333
                Y+ HA   G HYN 
Sbjct: 289 ---KDYYAHALATG-HYNF 303

Length = 306

>gnl|CDD|220671 pfam10275, Peptidase_C65, Peptidase C65 Otubain

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 24/115 (20%)

Query: 221 LRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRA 279
            R + +AY+++++ ++ PF + E +  EE           +C+ EVE  A     +++ A
Sbjct: 140 FRLLTSAYIKENADEYQPF-IDELLTVEE-----------FCEQEVEPMAKESDHVQIIA 187

Query: 280 LTHCLRKHIMIYSGSFPDVEMGKEY--SNGGSDSSGSSIILSYHRHAFGLGEHYN 332
           L   L   + +    + D   G EY   N   + +   I L Y         HY+
Sbjct: 188 LAEALGIPVRVE---YLDRSEGNEYNHHNFPPEPNAPKITLLYRPG------HYD 233

This family of proteins conserved from plants to humans is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryote being a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. Length = 237

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 16/170 (9%)

Query: 28  EAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKK--QVEEE 85
           E    +  ++ +E          KEI +L+++  EL++   +  +   + K++  ++E E
Sbjct: 252 EEELEELQEELEEAE--------KEIEELKSELEELREELEELQEELLELKEEIEELEGE 303

Query: 86  ISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP---SKGT 142
           IS L  +L E   +             +   L   ++     T++ + +Q          
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERE--TLLEELEQLLAELEEAKE 361

Query: 143 KRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIK 192
           +  EK +      E+  +  +  + ++   E  ++  +L  L   +  ++
Sbjct: 362 ELEEKLSALLEELEELFEALREEL-AELEAELAEIRNELEELKREIESLE 410

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	100.0
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.97
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.93
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.7
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.61
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.58
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.38
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.84
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	87.53
PF14282	106	FlxA: FlxA-like protein	82.13

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-71  Score=517.25  Aligned_cols=284  Identities=44%  Similarity=0.749  Sum_probs=245.0

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCC
Q 019666           38 KQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNG--NEKS  115 (337)
Q Consensus        38 ~~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~~l~~~~~~~--~~~~  115 (337)
                      ..+++++|++|||+|+|+||++||+|||+++||+|    ++||+++.+|++||.+|.+||.+||..+......+  ..+.
T Consensus        10 ~~~~~e~iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e~   85 (302)
T KOG2606|consen   10 DEESNEEILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKEN   85 (302)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCcccc
Confidence            34556999999999999999999999999999996    88999999999999999999999999998533211  1122


Q ss_pred             cchhhhhhhcccccccccCCCCCccchhhHHHHHHHHHHHH-HHHHHHHh--cccCCchhHHHHHHHHhccCCCEEeeeC
Q 019666          116 NLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQS--NIVSDRTVEDEKLEKKLGPLGLTVNDIK  192 (337)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~sK~~~Rr~~r~~~~~~~~-~~i~~e~~--~~~~~r~~E~~~l~~~L~~~gL~i~~I~  192 (337)
                      ..++++..+++++....++.|+.||++|||.+++..++.++ ++|.+++.  +.++.+..|.+.+.+.|...||.+++||
T Consensus        86 ~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~Ip  165 (302)
T KOG2606|consen   86 LIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDIP  165 (302)
T ss_pred             chhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccCC
Confidence            24455556666666665555667888887776665555555 78876544  7889999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhcCCcccc
Q 019666          193 PDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWG  272 (337)
Q Consensus       193 ~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WG  272 (337)
                      +||||||+||+|||..+++  ...++..||..+|+||+.|.++|.||+.++.+++..    +.++|+.||+.|++|+.||
T Consensus       166 ~DG~ClY~aI~hQL~~~~~--~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~----~~~~f~~Yc~eI~~t~~WG  239 (302)
T KOG2606|consen  166 ADGHCLYAAISHQLKLRSG--KLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL----GPEDFDKYCREIRNTAAWG  239 (302)
T ss_pred             CCchhhHHHHHHHHHhccC--CCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC----CHHHHHHHHHHhhhhcccc
Confidence            9999999999999998775  458899999999999999999999999999887642    2678999999999999999


Q ss_pred             cHHHHHHHHHhhcccEEEEECCCCceEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 019666          273 GELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  337 (337)
Q Consensus       273 G~lEL~ALS~~l~v~I~V~~~~~~~~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p~  337 (337)
                      |+|||.|||++|++||+||+.++|++.+|++|..      .+||.|+||+|+||||+|||||.|.
T Consensus       240 gelEL~AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  240 GELELKALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             chHHHHHHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence            9999999999999999999999999999999852      5899999999999999999999884

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.9e-33  Score=258.14  Aligned_cols=279  Identities=19%  Similarity=0.163  Sum_probs=220.5

Q ss_pred             cccccc-HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 019666           36 QKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEK  114 (337)
Q Consensus        36 ~~~~e~-~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~~l~~~~~~~~~~  114 (337)
                      +..-+| |+.+..+||.|.++||.+||.++|+++.|.+    +.|  |+..|..|+..|..+|+-|+..+.....+.++-
T Consensus         7 ~~~~~t~~e~lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea   80 (306)
T COG5539           7 QAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEA   80 (306)
T ss_pred             ccccchHHHHHHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhcc
Confidence            444555 8999999999999999999999999998876    323  999999999999999999999886433222221


Q ss_pred             Ccchhh--hhhhcc------------ccccccc-CCCCCccchhhHHHHHHHHHHHHHHHHHHHhcc----cCCchhHHH
Q 019666          115 SNLDNL--VKAVAG------------VTVISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDE  175 (337)
Q Consensus       115 ~~~~~~--~~~~~~------------~~~~~~~-~~~~~sK~~~Rr~~r~~~~~~~~~~i~~e~~~~----~~~r~~E~~  175 (337)
                      ++.+++  ...++.            ....... .+....++++||+.+..++.+....+++.++.+    ++....+..
T Consensus        81 ~q~~~l~~~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~  160 (306)
T COG5539          81 DQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAIL  160 (306)
T ss_pred             CCCccCCCcccCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhc
Confidence            111111  111111            1111111 123456899999999999998888888776554    444788888


Q ss_pred             HHHHHhccCCCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhh
Q 019666          176 KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV  255 (337)
Q Consensus       176 ~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~  255 (337)
                      .+...+...++.-.+++|||+|+|.+|++||..+.....-.....+|-.-+.|...|...|.+|..++.++.       .
T Consensus       161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~-------m  233 (306)
T COG5539         161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLA-------M  233 (306)
T ss_pred             CcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhh-------c
Confidence            999999999999999999999999999999987643212233588999999999999999999999988765       4


Q ss_pred             hhHHHHHHHhcCCcccccHHHHHHHHHhhcccEEEEECCCCceEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 019666          256 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  335 (337)
Q Consensus       256 ~~~~~Y~~~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~~~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~  335 (337)
                      ..|++||+.|..++.||+.+|++|||..|++|++++...+|.+.+++ .      +.+..+-+.|++|+|++| |||++.
T Consensus       234 ~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~-c------~~~~~~e~~~~~Ha~a~G-H~n~~~  305 (306)
T COG5539         234 VLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNI-C------GTGFVGEKDYYAHALATG-HYNFGE  305 (306)
T ss_pred             chHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeec-c------ccccchhhHHHHHHHhhc-CccccC
Confidence            68999999999999999999999999999999999999999988754 1      124567789999999999 999974

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.93  E-value=2.1e-26  Score=191.63  Aligned_cols=116  Identities=39%  Similarity=0.658  Sum_probs=94.9

Q ss_pred             CCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHh-cCccccccccccccccchhhhhhhhhhHHHHHHHhcCCcc
Q 019666          192 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMR-DHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAA  270 (337)
Q Consensus       192 ~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~-~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~  270 (337)
                      |||||||||||++||+.... ..+.+|..||+.+++||+ .|++.|.+|+.+              .      +|+++++
T Consensus         1 pgDGnClF~Avs~~l~~~~~-~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~--------------~------~~~~~~~   59 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGG-GSEDNHQELRKAVVDYLRDKNRDKFEEFLEG--------------D------KMSKPGT   59 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-S-SSTTTHHHHHHHHHHHHHTHTTTHHHHHHHH--------------H------HHTSTTS
T ss_pred             CCCccHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccchhhhhhhh--------------h------hhccccc
Confidence            79999999999999994321 057899999999999999 999999999864              1      9999999


Q ss_pred             cccHHHHHHHHHhhcccEEEEECCCCceE----eCCCcCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 019666          271 WGGELELRALTHCLRKHIMIYSGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY  331 (337)
Q Consensus       271 WGG~lEL~ALS~~l~v~I~V~~~~~~~~~----ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHY  331 (337)
                      |||++||.|||.+|+++|+||+...+...    +...+.   +....++|+|+|+.+.|..|+||
T Consensus        60 Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   60 WGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYP---PLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             HEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEES---TTTTTTSEEEEEETEEEEETTEE
T ss_pred             cCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccc---cCCCCCeEEEEEcCCccCCCCCC
Confidence            99999999999999999999987654422    222111   23457899999999999999999

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.1e-17  Score=154.58  Aligned_cols=122  Identities=20%  Similarity=0.393  Sum_probs=100.7

Q ss_pred             CCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH
Q 019666          185 GLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE  264 (337)
Q Consensus       185 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~  264 (337)
                      -|.++.||.|++|||+||++-+.+...    ....+||+.+|..+..||+.|..-+.+             .+-.+||.|
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~----~~~~elR~iiA~~Vasnp~~yn~AiLg-------------K~n~eYc~W  171 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVS----NRPYELREIIAQEVASNPDKYNDAILG-------------KPNKEYCAW  171 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccC----CCcHHHHHHHHHHHhcChhhhhHHHhC-------------CCcHHHHHH
Confidence            366788999999999999999987432    334789999999999999999765543             456899999


Q ss_pred             hcCCcccccHHHHHHHHHhhcccEEEEECCCCce-EeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 019666          265 VESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  335 (337)
Q Consensus       265 m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~~~-~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~  335 (337)
                      |.+...|||.|||..||..|+|.|.|++.....+ .||+.-      .....+.|.|.      |.|||++.
T Consensus       172 I~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~  231 (307)
T KOG3288|consen  172 ILKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA  231 (307)
T ss_pred             HccccccCceEEeeeehhhhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence            9999999999999999999999999999876554 356531      23567999998      79999873

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.61  E-value=7.1e-16  Score=144.24  Aligned_cols=102  Identities=24%  Similarity=0.400  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hcCCcccccHHHHHHHHHhhcccEEEEECCCC
Q 019666          218 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP  296 (337)
Q Consensus       218 ~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~  296 (337)
                      ...||..++.||+.|++.|.||+.+.+          ..+|++||.. |...+.-++++.|.|||++|+++|.|+..++.
T Consensus       139 V~flRLlts~~l~~~~d~y~~fi~~~~----------~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~  208 (244)
T PF10275_consen  139 VIFLRLLTSAYLKSNSDEYEPFIDGLE----------YLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRS  208 (244)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSTT------------S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSS
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhhcccc----------cCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCC
Confidence            458999999999999999999998642          2479999974 88888899999999999999999999998754


Q ss_pred             --ceEeC-CCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 019666          297 --DVEMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  336 (337)
Q Consensus       297 --~~~ig-~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p  336 (337)
                        ...+. ..|.. ......+.|+|.|..      +|||-++|
T Consensus       209 ~~~~~~~~~~~~~-~~~~~~~~i~LLyrp------gHYdIly~  244 (244)
T PF10275_consen  209 VEGDEVNRHEFPP-DNESQEPQITLLYRP------GHYDILYP  244 (244)
T ss_dssp             GCSTTSEEEEES--SSTTSS-SEEEEEET------BEEEEEEE
T ss_pred             CCCCccccccCCC-ccCCCCCEEEEEEcC------CccccccC
Confidence              11010 11211 112346889999996      69999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=3.6e-15  Score=136.13  Aligned_cols=98  Identities=17%  Similarity=0.332  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hcCCcccccHHHHHHHHHhhcccEEEEECCCC
Q 019666          218 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP  296 (337)
Q Consensus       218 ~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~  296 (337)
                      +..||..++.+|+.|+|.|.|||.++            .++.+||.. +.--..-.|+++|.|||+++++.|.|...+..
T Consensus       156 V~ylRLvtS~~ik~~adfy~pFI~e~------------~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~  223 (256)
T KOG3991|consen  156 VMYLRLVTSGFIKSNADFYQPFIDEG------------MTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRG  223 (256)
T ss_pred             HHHHHHHHHHHHhhChhhhhccCCCC------------CcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCC
Confidence            57899999999999999999999762            479999986 55445568999999999999999999887643


Q ss_pred             ce-EeC-CCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 019666          297 DV-EMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  337 (337)
Q Consensus       297 ~~-~ig-~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p~  337 (337)
                      .- ..+ ..|.    ....|.|+|.|..      .|||-++|.
T Consensus       224 ~~~~~~hH~fp----e~s~P~I~LLYrp------GHYdilY~~  256 (256)
T KOG3991|consen  224 SGDTVNHHDFP----EASAPEIYLLYRP------GHYDILYKK  256 (256)
T ss_pred             CCCCCCCCcCc----cccCceEEEEecC------CccccccCC
Confidence            22 222 2342    3457889999985      799999984

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.6e-13  Score=132.65  Aligned_cols=133  Identities=20%  Similarity=0.246  Sum_probs=102.2

Q ss_pred             HHHHHHhccCCCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhh
Q 019666          175 EKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ  254 (337)
Q Consensus       175 ~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~  254 (337)
                      ..+...+...|+.+..|..||+|+|||+++|+++     +...|..+|+.+++++..++++|..|++.            
T Consensus       207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~-----d~e~~~~~~~~~~dq~~~e~~~~~~~vt~------------  269 (371)
T KOG2605|consen  207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYG-----DDEQHDHNRRECVDQLKKERDFYEDYVTE------------  269 (371)
T ss_pred             HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhc-----CHHHHHHHHHHHHHHHhhccccccccccc------------
Confidence            3344444778999999999999999999999999     45689999999999999999999988863            


Q ss_pred             hhhHHHHHHHhcCCcccccHHHHHHHHH---hhcccEEEEECCCCceE-eCCCcCCCCCCCCCCeEEEEeccCCCCCCCc
Q 019666          255 VERFENYCKEVESTAAWGGELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEH  330 (337)
Q Consensus       255 ~~~~~~Y~~~m~~~~~WGG~lEL~ALS~---~l~v~I~V~~~~~~~~~-ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeH  330 (337)
                        +|..|++.++..+.||.++|++|+|.   ....++.|.+...+.|+ +.+.+.     .....+++.     |..-.|
T Consensus       270 --~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n-----~~~~~h  337 (371)
T KOG2605|consen  270 --DFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYN-----FWVEVH  337 (371)
T ss_pred             --chhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhc-----ccchhh
Confidence              69999999999999999999999995   55566777666666654 222221     112223333     334589


Q ss_pred             cccccc
Q 019666          331 YNSVIP  336 (337)
Q Consensus       331 YnSv~p  336 (337)
                      |+.+++
T Consensus       338 ~~~~~~  343 (371)
T KOG2605|consen  338 YNTARH  343 (371)
T ss_pred             hhhccc
Confidence            998875

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=9.3e-10  Score=104.06  Aligned_cols=112  Identities=16%  Similarity=0.214  Sum_probs=91.0

Q ss_pred             eCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhcCCcc
Q 019666          191 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAA  270 (337)
Q Consensus       191 I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~  270 (337)
                      ..+|..|+|+++++.++-.       .+.+||..++..+.+|||.|.+.+.+             .+.-.||.++.++..
T Consensus       117 ~~~d~srl~q~~~~~l~~a-------sv~~lrE~vs~Ev~snPDl~n~~i~~-------------~~~i~y~~~i~k~d~  176 (306)
T COG5539         117 GQDDNSRLFQAERYSLRDA-------SVAKLREVVSLEVLSNPDLYNPAILE-------------IDVIAYATWIVKPDS  176 (306)
T ss_pred             CCCchHHHHHHHHhhhhhh-------hHHHHHHHHHHHHhhCccccchhhcC-------------cchHHHHHhhhcccc
Confidence            3358899999999999752       68999999999999999999998875             356799999999999


Q ss_pred             cc-cHHHHHHHHHhhcccEEEEECCCC-ceEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 019666          271 WG-GELELRALTHCLRKHIMIYSGSFP-DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  335 (337)
Q Consensus       271 WG-G~lEL~ALS~~l~v~I~V~~~~~~-~~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~  335 (337)
                      || |.+||.+||+.|++.|+|+..+.. ...+++.       .....+.+.|.      |.|||+..
T Consensus       177 ~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t  230 (306)
T COG5539         177 QGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET  230 (306)
T ss_pred             CCCceEEEeEeccccceeeeeeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence            99 999999999999999999998843 2234331       11234667777      68999753

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.53  E-value=1.1  Score=36.13  Aligned_cols=65  Identities=15%  Similarity=0.375  Sum_probs=46.4

Q ss_pred             eCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhc--CC
Q 019666          191 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVE--ST  268 (337)
Q Consensus       191 I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~--~~  268 (337)
                      |..|+|||.-||+.+|+..        ...|-..    |..|.                      ..+..||.+++  .+
T Consensus         3 ~sR~NNCLVVAis~~L~~T--------~e~l~~~----M~An~----------------------~~i~~y~~W~r~~~~   48 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVT--------LEKLDNL----MQANV----------------------STIKKYHTWLRKKRP   48 (104)
T ss_pred             ccCCCCeEeehHHHHhcch--------HHHHHHH----HHhhH----------------------HHHHHHHHHHhcCCC
Confidence            5679999999999999752        3333332    33321                      35789999875  56


Q ss_pred             cccccHHHHHHHHHhhcccEEEEE
Q 019666          269 AAWGGELELRALTHCLRKHIMIYS  292 (337)
Q Consensus       269 ~~WGG~lEL~ALS~~l~v~I~V~~  292 (337)
                      .+|-+   -..+|+.|++.|.|--
T Consensus        49 STW~D---C~mFA~~LkVsm~vkV   69 (104)
T PF05415_consen   49 STWDD---CRMFADALKVSMQVKV   69 (104)
T ss_pred             CcHHH---HHHHHHhheeEEEEEE
Confidence            79976   4578999999988744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

>PF14282 FlxA: FlxA-like protein

Probab=82.13  E-value=14  Score=30.36  Aligned_cols=62  Identities=18%  Similarity=0.342  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019666           42 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL  104 (337)
Q Consensus        42 ~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~~l  104 (337)
                      .+....+=.+.++.|+.+|..+.....-.++ .++.+++.+..+|..|++.|...+.+.-..-
T Consensus        17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e-~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~   78 (106)
T PF14282_consen   17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAE-QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ   78 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3778888899999999999988764221222 3356779999999999999998887766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
3pfy_A	185	OTU domain-containing protein 5; structural genomi	2e-37
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	7e-27
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-26
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-22
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	2e-11
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	4e-10
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  131 bits (330), Expect = 2e-37
 Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 31/209 (14%)

Query: 132 QHDQAKPSKGTKRREKRAQQEAAREQRIQ---EEQSNIVSDRTVEDEKLEKKLGPLGLTV 188
            H     S       + A   +  E        E  +  +    E    +      G  +
Sbjct: 2   HHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFII 61

Query: 189 NDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGE 248
             +K DG CL+RAV DQ+            + +R+    Y+  ++  F  +   +     
Sbjct: 62  KQMKEDGACLFRAVADQVYG-----DQDMHEVVRKHCMDYLMKNADYFSNYVTED----- 111

Query: 249 ESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGG 308
                    F  Y          G  +E++A+     + + +Y  S   +          
Sbjct: 112 ---------FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ-- 160

Query: 309 SDSSGSSIILSYHRHAFGLGEHYNSVIPI 337
             +    I +SYHR+      HYNSV+  
Sbjct: 161 --NEDEPIRVSYHRN-----IHYNSVVNP 182

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score =  104 bits (261), Expect = 7e-27
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 31/164 (18%)

Query: 173 EDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDH 232
             E      G   L+V+ +  D  CL+ A+   +          + + LR+MV+  + ++
Sbjct: 7   STEMSIGGSGENVLSVHPVLDDNSCLFHAIAYGIFK------QDSVRDLREMVSKEVLNN 60

Query: 233 SSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYS 292
              F    L +               ++Y + +    +WGG +E+  ++  L   I +  
Sbjct: 61  PVKFNDAILDKP-------------NKDYAQWILKMESWGGAIEIGIISDALAVAIYVV- 106

Query: 293 GSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 336
               D++  K       D   + I++ ++      G HY+S+  
Sbjct: 107 ----DIDAVK-IEKFNEDKFDNYILILFN------GIHYDSLTM 139

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  102 bits (254), Expect = 3e-26
 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 22/152 (14%)

Query: 186 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENM 245
             +     DG+C Y ++ +                    +       +  +        +
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKT-------DHSYHYIKRLTESAARKYYQEEPEARL 83

Query: 246 IGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYS 305
           +G           E+Y K + S   WG  LE   L   +   I+I++ +  D        
Sbjct: 84  VGLS--------LEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGI-- 133

Query: 306 NGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 337
             G     +++ L +         H++++  +
Sbjct: 134 KFGDGDVFTAVNLLHSG-----QTHFDALRIL 160

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 92.1 bits (228), Expect = 3e-22
 Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 22/152 (14%)

Query: 186 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENM 245
             +     DG+C Y ++ +                    +       +  +        +
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTD-------HSYHYIKRLTESAARKYYQEEPEARL 83

Query: 246 IGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYS 305
           +G           E+Y K + S   WG  LE   L   +   I+I++ +  D    +   
Sbjct: 84  VGLS--------LEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEV--EAGI 133

Query: 306 NGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 337
             G     +++ L +         H++++  +
Sbjct: 134 KFGDGDVFTAVNLLHSG-----QTHFDALRIL 160

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 30/190 (15%)

Query: 150 QQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG--HCLYRAVEDQLA 207
            +E  + +    +  N +     E+ K           V  ++ DG    L +   DQ  
Sbjct: 68  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQ-- 125

Query: 208 HLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYC-KEVE 266
                AS +  Q LR + +A++R+ +  F  F      I EE         +++C  EVE
Sbjct: 126 ----SASDHIVQFLRLLTSAFIRNRADFFRHF------IDEEMD------IKDFCTHEVE 169

Query: 267 STAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFG 326
             A     +++ AL+  L   + +    + D        +   +++  S+ L Y      
Sbjct: 170 PMATECDHIQITALSQALSIALQVE---YVDEMDTALNHHVFPEAATPSVYLLYK----- 221

Query: 327 LGEHYNSVIP 336
              HYN +  
Sbjct: 222 -TSHYNILYA 230

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 58.2 bits (140), Expect = 4e-10
 Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 29/188 (15%)

Query: 148 RAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD--GHCLYRAVEDQ 205
              +E  R + +  +    +  +   +  +E         +  ++       L  +  DQ
Sbjct: 69  DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQ 128

Query: 206 LAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYC-KE 264
                   S Y    LR + + Y++  S  F  F                   + +C +E
Sbjct: 129 ------STSDYLVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQE 170

Query: 265 VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHA 324
           VE        + + AL   L   I +        E G    +   + S   + L Y    
Sbjct: 171 VEPMCKESDHIHIIALAQALSVSIQVE--YMDRGEGGTTNPHIFPEGSEPKVYLLYR--- 225

Query: 325 FGLGEHYN 332
                HY+
Sbjct: 226 ---PGHYD 230

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 33/155 (21%)

Query: 188 VNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIG 247
           ++        +Y  + D       G++ Y     R + +A+++ +S ++ PF      I 
Sbjct: 146 IHSGVHTEEAVYTILNDD------GSANYILMFFRLITSAFLKQNSEEYAPF------ID 193

Query: 248 EESAQSQVERFENYC-KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN 306
           E            YC +E+E        L + +L       + I    + D         
Sbjct: 194 EGMT------VAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIE---YMDRTAAPNGGW 244

Query: 307 -----GGSDSSGSSIILSYHRHAFGLGEHYNSVIP 336
                         I L Y         HY+ +  
Sbjct: 245 HYDIPSDDQQIAPEITLLYR------PGHYDVIYK 273

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 20  QEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKK 79
           + ++E        DA+ K  E   E   + +K++ +   +++E  +     ++   KA  
Sbjct: 96  KRLQEL-------DAASKVME--QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146

Query: 80  KQVEEEI 86
           +Q + +I
Sbjct: 147 QQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	100.0
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.93
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.91
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.86
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.84
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.66
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.57

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=1.2e-39  Score=292.01  Aligned_cols=145  Identities=23%  Similarity=0.399  Sum_probs=110.7

Q ss_pred             HHhcccCCchhHHHHHHHHhccCCCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccc
Q 019666          162 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL  241 (337)
Q Consensus       162 e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~  241 (337)
                      ++...++.+..|..-++.+|+.+||.+++||+|||||||||++||++     .+..|..||+.|++||++|+++|.|||.
T Consensus        35 ~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g-----~~~~h~~LR~~vv~yi~~n~d~f~~Fv~  109 (185)
T 3pfy_A           35 EAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYG-----DQDMHEVVRKHCMDYLMKNADYFSNYVT  109 (185)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHS-----CGGGHHHHHHHHHHHHHHTHHHHTTCC-
T ss_pred             HhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444556899999999999999999999999999999999999998     4678999999999999999999999995


Q ss_pred             cccccchhhhhhhhhhHHHHHHHhcCCcccccHHHHHHHHHhhcccEEEEECCCCceE-e-CCCcCCCCCCCCCCeEEEE
Q 019666          242 SENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVE-M-GKEYSNGGSDSSGSSIILS  319 (337)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~~~~-i-g~ef~~~~~~~~~~~I~L~  319 (337)
                      +              +|++||++|+++++|||++||+|||++|+++|.||+.+++++. + |.+.      ...++|+|+
T Consensus       110 ~--------------~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~  169 (185)
T 3pfy_A          110 E--------------DFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVS  169 (185)
T ss_dssp             ------------------------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEE
T ss_pred             c--------------cHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEE
Confidence            3              6999999999999999999999999999999999998875554 3 3222      236899999


Q ss_pred             eccCCCCCCCccccccc
Q 019666          320 YHRHAFGLGEHYNSVIP  336 (337)
Q Consensus       320 Y~~h~y~LGeHYnSv~p  336 (337)
                      ||+     |+|||||++
T Consensus       170 Y~~-----~~HYnSv~~  181 (185)
T 3pfy_A          170 YHR-----NIHYNSVVN  181 (185)
T ss_dssp             EET-----TTEEEEEEC
T ss_pred             ECC-----CCCcccccC
Confidence            998     499999986

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=100.00  E-value=3.9e-35  Score=268.08  Aligned_cols=123  Identities=20%  Similarity=0.385  Sum_probs=109.0

Q ss_pred             ccCCCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHH
Q 019666          182 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENY  261 (337)
Q Consensus       182 ~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y  261 (337)
                      ...||.+++||+|||||||||++|| +     .+..|..||+.||+||++|+++|.+|+.+             .+|++|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~-----~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-------------~~~e~Y   76 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-F-----KQDSVRDLREMVSKEVLNNPVKFNDAILD-------------KPNKDY   76 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-H-----SSCCSHHHHHHHHHHHHHCTTTTCHHHHT-------------SCHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-C-----CchHHHHHHHHHHHHHHHCHHHHhhhhcC-------------CCHHHH
Confidence            4458999999999999999999999 5     35689999999999999999999877754             379999


Q ss_pred             HHHhcCCcccccHHHHHHHHHhhcccEEEEECCC-CceEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 019666          262 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  336 (337)
Q Consensus       262 ~~~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~-~~~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p  336 (337)
                      |.+|+++++|||++||+|||++|+++|.||+.++ +.+.||+++       ..++|+|+|+      |+|||||++
T Consensus        77 ~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~  139 (212)
T 3by4_A           77 AQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM  139 (212)
T ss_dssp             HHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred             HHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence            9999999999999999999999999999999874 566787654       2679999997      799999975

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=3.9e-31  Score=236.89  Aligned_cols=120  Identities=17%  Similarity=0.319  Sum_probs=100.1

Q ss_pred             CEEeeeCCCCcchHHHHHHHHhhccCCCCCcc-----HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHH
Q 019666          186 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN-----FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFEN  260 (337)
Q Consensus       186 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~-----~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~  260 (337)
                      +.+..||||||||||||++||++..    +..     |..||+.|++||++|+++|   +.+             .+|++
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~----~~~~~~~~~~~LR~~~~~yi~~~~~~~---~~~-------------~~~~~   90 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNK----TDHSYHYIKRLTESAARKYYQEEPEAR---LVG-------------LSLED   90 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTC----CTTTHHHHHHHHHHHHHHHGGGCTTHH---HHC-------------CCHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCC----ccchhhhHHHHHHHHHHHHHHhChHhh---hcC-------------CCHHH
Confidence            7788999999999999999998741    234     8999999999999999983   222             47999


Q ss_pred             HHHHhcCCcccccHHHHHHHHHhhcccEEEEECCCCc-----eEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 019666          261 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  335 (337)
Q Consensus       261 Y~~~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~~-----~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~  335 (337)
                      ||++|+++++|||++||+|||++|+++|+||+.+++.     +.+|++.       ..++|+|+|++     |+|||||+
T Consensus        91 Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~  158 (185)
T 3phx_A           91 YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALR  158 (185)
T ss_dssp             HHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEE
T ss_pred             HHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhce
Confidence            9999999999999999999999999999999977643     3465532       26799999984     49999998


Q ss_pred             cC
Q 019666          336 PI  337 (337)
Q Consensus       336 p~  337 (337)
                      |+
T Consensus       159 ~~  160 (185)
T 3phx_A          159 IL  160 (185)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.97  E-value=4.6e-31  Score=241.86  Aligned_cols=120  Identities=16%  Similarity=0.306  Sum_probs=101.9

Q ss_pred             CEEeeeCCCCcchHHHHHHHHhhccCCCCCcc-----HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHH
Q 019666          186 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN-----FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFEN  260 (337)
Q Consensus       186 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~-----~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~  260 (337)
                      +.+..||||||||||||++||++..    +..     |..||+.|++||++|+++|   +.+             .+|++
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~----~~~~~~~~h~~LR~~va~yi~~n~d~~---~~~-------------~~fee   90 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNK----TDHSYHYIKRLTESAARKYYQEEPEAR---LVG-------------LSLED   90 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTC----CTTTHHHHHHHHHHHHHHHGGGCHHHH---HHC-------------CCHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCC----ccchhhhHHHHHHHHHHHHHHhChhhh---hcC-------------CCHHH
Confidence            7789999999999999999998741    234     8999999999999999983   222             47999


Q ss_pred             HHHHhcCCcccccHHHHHHHHHhhcccEEEEECCCC-----ceEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 019666          261 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  335 (337)
Q Consensus       261 Y~~~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~-----~~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~  335 (337)
                      ||++|+++++|||++||+|||++|+++|+||+.+.+     .+.+|++.       ..++|+|+|++     |+|||||+
T Consensus        91 Y~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~  158 (219)
T 3phu_A           91 YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALR  158 (219)
T ss_dssp             HHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEE
T ss_pred             HHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhhe
Confidence            999999999999999999999999999999998766     34566542       26799999984     59999998


Q ss_pred             cC
Q 019666          336 PI  337 (337)
Q Consensus       336 p~  337 (337)
                      |+
T Consensus       159 ~~  160 (219)
T 3phu_A          159 IL  160 (219)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.93  E-value=1.6e-26  Score=213.90  Aligned_cols=99  Identities=23%  Similarity=0.375  Sum_probs=79.8

Q ss_pred             cHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhcCCcccccHHHHHHHHHhhcccEEEEECCC
Q 019666          217 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSF  295 (337)
Q Consensus       217 ~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~  295 (337)
                      .+..||..++.||+.|+|+|.|||.++            .+|++||. .|+.+++|||++||+|||++|++||.|++.++
T Consensus       131 iv~~lR~lta~~i~~~~d~f~pFi~~~------------~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~  198 (234)
T 1tff_A          131 IVQFLRLLTSAFIRNRADFFRHFIDEE------------MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDE  198 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSCTT------------SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-
T ss_pred             HHHHHHHHHHHHHHHCHHHHhhhhcCC------------CCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCC
Confidence            356799999999999999999999752            26999999 79999999999999999999999999999887


Q ss_pred             CceEe-CCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 019666          296 PDVEM-GKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  337 (337)
Q Consensus       296 ~~~~i-g~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p~  337 (337)
                      +...+ ...|..    ...+.|+|+|+      ++|||+|+|.
T Consensus       199 ~~~~~~~~~~~~----~~~~~I~LlY~------pgHYdily~~  231 (234)
T 1tff_A          199 MDTALNHHVFPE----AATPSVYLLYK------TSHYNILYAA  231 (234)
T ss_dssp             ------CCCCCC----CSSCSEEEEEE------TTEEEEEEEC
T ss_pred             CCCccccccCCC----CCCCeEEEEEC------CCCceecccC
Confidence            65222 223432    34678999998      4699999984

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.91  E-value=1.2e-24  Score=201.25  Aligned_cols=98  Identities=19%  Similarity=0.290  Sum_probs=80.9

Q ss_pred             cHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhcCCcccccHHHHHHHHHhhcccEEEEECCC
Q 019666          217 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSF  295 (337)
Q Consensus       217 ~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~  295 (337)
                      .+..||..++.||+.|+|+|.|||.++            .+|++||. .|+.+++|||++||.|||++|++||.|++.++
T Consensus       134 ~v~~lR~lta~yi~~~~d~f~pFi~~~------------~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~  201 (234)
T 2zfy_A          134 LVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDR  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGCCSS------------CCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCC------------CCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCC
Confidence            457899999999999999999999752            36999997 69999999999999999999999999999886


Q ss_pred             Cce--EeCCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 019666          296 PDV--EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  336 (337)
Q Consensus       296 ~~~--~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p  336 (337)
                      +..  ..+..|+.    +..++|+|+|+.      +|||+|+|
T Consensus       202 ~~~~~v~~~~f~~----~~~p~I~LlY~p------gHYdiLy~  234 (234)
T 2zfy_A          202 GEGGTTNPHIFPE----GSEPKVYLLYRP------GHYDILYK  234 (234)
T ss_dssp             CCSSCCEEEEEST----TCCCSEEEEEET------TEEEEEEC
T ss_pred             CCCCcccceeCCC----CCCCeEEEEECC------CCcccCCC
Confidence            541  12234432    236789999985      59999998

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.86  E-value=1.3e-22  Score=191.79  Aligned_cols=146  Identities=20%  Similarity=0.310  Sum_probs=106.8

Q ss_pred             hHHHHHHHHhccCCCEEeeeCCCCcchHHHHHHHHhhccC-----------------------C----------------
Q 019666          172 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSG-----------------------G----------------  212 (337)
Q Consensus       172 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~-----------------------~----------------  212 (337)
                      +=.+++..+- ..--.++.|.|||||+|||++..+...-.                       +                
T Consensus        64 ~~~~Ki~~L~-~~Y~~~R~~RGDGNCFyRAf~F~ylE~Ll~~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~el  142 (284)
T 4dhi_B           64 AFLSKATELS-EVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEF  142 (284)
T ss_dssp             HHHHHHHHHH-TTEEEEECBCCSTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhccceeeecCCCchhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHH
Confidence            4444444433 33456889999999999999987743200                       0                


Q ss_pred             -------C---------------CCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhcCCc
Q 019666          213 -------A---------------SPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTA  269 (337)
Q Consensus       213 -------~---------------~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~  269 (337)
                             .               +..-+..||..++.||+.|+|+|.|||.++            .++++||. .|+.++
T Consensus       143 l~~i~~~~~~~~~L~~~Fnd~~~S~~iv~~LRllts~yi~~~~d~f~pFi~~~------------~~v~~yC~~eVe~~~  210 (284)
T 4dhi_B          143 LEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFIDEG------------MTVAQYCEQEIEPMW  210 (284)
T ss_dssp             HHHHHHTCSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTT------------CCHHHHHHHHTSSTT
T ss_pred             HHHHhcCCCcHHHHHHHhcCcccchHHHHHHHHHHHHHHHHCHHHHHhhcCCC------------CCHHHHHHHhceehh
Confidence                   0               012367899999999999999999999752            36999999 899999


Q ss_pred             ccccHHHHHHHHHhhcccEEEEECCCCc-eEeC-CC-cCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 019666          270 AWGGELELRALTHCLRKHIMIYSGSFPD-VEMG-KE-YSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  337 (337)
Q Consensus       270 ~WGG~lEL~ALS~~l~v~I~V~~~~~~~-~~ig-~e-f~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p~  337 (337)
                      .|||+++|.|||++|+++|.|+..++.. ..+. .. |.. +.....+.|+|.|..      .|||.|+|.
T Consensus       211 ~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~-~~~~~~p~I~LLYrp------gHYDILY~~  274 (284)
T 4dhi_B          211 KDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS-DDQQIAPEITLLYRP------GHYDVIYKK  274 (284)
T ss_dssp             CCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC-CCSCCCCSEEEEEET------TEEEEEEEC
T ss_pred             hcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC-CCCCCCCEEEEeecC------CCccccccC
Confidence            9999999999999999999999987521 1111 01 311 111234789999994      799999984

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.84  E-value=3.9e-21  Score=190.30  Aligned_cols=130  Identities=21%  Similarity=0.317  Sum_probs=101.7

Q ss_pred             CCEEeeeCCCCcchHHHHHHHHhhccC-----------------------CCC---------------------------
Q 019666          185 GLTVNDIKPDGHCLYRAVEDQLAHLSG-----------------------GAS---------------------------  214 (337)
Q Consensus       185 gL~i~~I~~DGnCLFrAIa~QL~~~~~-----------------------~~~---------------------------  214 (337)
                      --.++.|.|||||+|||+++++.....                       +..                           
T Consensus       207 y~~~R~vrgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~~~~~~~L  286 (399)
T 4ddg_A          207 YSYIRKTRPDGNSFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADL  286 (399)
T ss_dssp             CSEEECBCCSSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             cCeeeeecCCCchHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHccCCHHHH
Confidence            447899999999999999987765321                       000                           


Q ss_pred             ----------CccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhcCCcccccHHHHHHHHHh
Q 019666          215 ----------PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHC  283 (337)
Q Consensus       215 ----------~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~ALS~~  283 (337)
                                ..-+..||..++.||+.|+|+|.|||.+.            .++++||. .|..+++||||++|.|||++
T Consensus       287 ~~~fnd~~~s~~iv~~lRllts~~i~~~~d~f~pFi~~~------------~~v~~yc~~~ve~~~~e~d~l~I~ALa~a  354 (399)
T 4ddg_A          287 LASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQEVEPMCKESDHIHIIALAQA  354 (399)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSSSS------------CCHHHHHHHHTSSTTCCBCHHHHHHHHHH
T ss_pred             HHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhcccCCC------------CCHHHHHHHhceeHHhhCcHHHHHHHHHH
Confidence                      01356799999999999999999999752            36999999 89999999999999999999


Q ss_pred             hcccEEEEECCCCc-eEeC-CCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 019666          284 LRKHIMIYSGSFPD-VEMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  336 (337)
Q Consensus       284 l~v~I~V~~~~~~~-~~ig-~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p  336 (337)
                      |+++|.|+..++.. ..+. ..|.    .+..+.|+|.|..      .|||.|+|
T Consensus       355 l~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP------gHYDiLY~  399 (399)
T 4ddg_A          355 LSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP------GHYDILYK  399 (399)
T ss_dssp             HTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET------BEEEEEEC
T ss_pred             cCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC------CccccCCC
Confidence            99999999876521 1111 1131    1246789999986      59999987

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.66  E-value=4.7e-08  Score=94.31  Aligned_cols=138  Identities=19%  Similarity=0.293  Sum_probs=86.6

Q ss_pred             CCCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCcc-ccc-----------cccccccccchhhh
Q 019666          184 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSS-DFL-----------PFYLSENMIGEESA  251 (337)
Q Consensus       184 ~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d-~F~-----------pFl~~~~~~~~~~~  251 (337)
                      ..|....+.||||||.+|++..++|.     .+....||+...+.|+.... .|.           .|...   +-.++.
T Consensus       110 ~rL~pL~t~GDGnCLLHAvSqamWGv-----~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~---gL~y~e  181 (390)
T 3dkb_A          110 RKLVALKTNGDGNCLMHATSQYMWGV-----QDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVET---GLCYDT  181 (390)
T ss_dssp             CCEEEBCCCCSSCHHHHHHHHHHHSS-----CSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC-------CCS
T ss_pred             cceEEEEecCCCchHHHHHhHHhcCC-----CCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhh---cccccH
Confidence            35778889999999999999999994     45678999999999987653 231           12110   000000


Q ss_pred             hhhhhhHHHHHHHhcCCcc--------c--ccHHHHHHHHHhhcccEEEEECC-------CC---ceEeCCCcCC---CC
Q 019666          252 QSQVERFENYCKEVESTAA--------W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GG  308 (337)
Q Consensus       252 ~~~~~~~~~Y~~~m~~~~~--------W--GG~lEL~ALS~~l~v~I~V~~~~-------~~---~~~ig~ef~~---~~  308 (337)
                      ..-..+|+.-+. |.++..        .  =-++-|.+||+++++||+||...       |.   ++.||.-|.+   +.
T Consensus       182 ~ew~~EW~~Iv~-~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp  260 (390)
T 3dkb_A          182 RNWNDEWDNLIK-MASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPA  260 (390)
T ss_dssp             SCSSHHHHHHHH-HTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCT
T ss_pred             HHHHHHHHHHHH-HhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCH
Confidence            001234544443 333321        1  13678999999999999999632       11   1223332321   22


Q ss_pred             CCCCCCeEEEEeccCCCCCCCccccccc
Q 019666          309 SDSSGSSIILSYHRHAFGLGEHYNSVIP  336 (337)
Q Consensus       309 ~~~~~~~I~L~Y~~h~y~LGeHYnSv~p  336 (337)
                      +.....||.|+|.+      .||.++++
T Consensus       261 ~~C~rsPI~LgY~s------~HFsaLV~  282 (390)
T 3dkb_A          261 QECYRYPIVLGYDS------HHFVPLVT  282 (390)
T ss_dssp             TSSCSSCEEEEECS------SCEEEEEE
T ss_pred             HHccCCceEEEecc------Cceeeeee
Confidence            34557899999997      69999986

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.57  E-value=1.2e-07  Score=93.03  Aligned_cols=141  Identities=19%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             CCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccc------cccccchh--hhhhhhh
Q 019666          185 GLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL------SENMIGEE--SAQSQVE  256 (337)
Q Consensus       185 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~------~~~~~~~~--~~~~~~~  256 (337)
                      .|......||||||-+|++..++|-     .+....||+...+.|......|..-..      +...+-.+  +...-..
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV-----~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~  262 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGI-----YDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQE  262 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSS-----CCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcc-----cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHH
Confidence            3667789999999999999999994     556789999999999875444421110      00000000  0000123


Q ss_pred             hHHHHHHHhcCCcccccHHHHHHHHHhhcccEEEEECCC---------CceEeCCCcCC---CCCCCCCCeEEEEeccCC
Q 019666          257 RFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYSN---GGSDSSGSSIILSYHRHA  324 (337)
Q Consensus       257 ~~~~Y~~~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~---------~~~~ig~ef~~---~~~~~~~~~I~L~Y~~h~  324 (337)
                      +|+.-+.-...++.==-++-+.+||+++++||+||....         .++.||.-|.+   +.+.....||.|+|.+  
T Consensus       263 EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~--  340 (454)
T 3zrh_A          263 DWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR--  340 (454)
T ss_dssp             HHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET--
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc--
Confidence            344444444556554456779999999999999998532         12233322221   1223456899999997  


Q ss_pred             CCCCCccccccc
Q 019666          325 FGLGEHYNSVIP  336 (337)
Q Consensus       325 y~LGeHYnSv~p  336 (337)
                          .||.++++
T Consensus       341 ----gHFsaLV~  348 (454)
T 3zrh_A          341 ----GHFSALVA  348 (454)
T ss_dssp             ----TEEEEEEE
T ss_pred             ----cceeeeee
Confidence                59999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	4e-13

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 4e-13
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 28/189 (14%)

Query: 150 QQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHC--LYRAVEDQLA 207
            +E  + +    +  N +     E+ K           V  ++ DG    L +   DQ  
Sbjct: 62  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQ-- 119

Query: 208 HLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVES 267
                AS +  Q LR + +A++R+ +  F  F   E  I +               EVE 
Sbjct: 120 ----SASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDF-----------CTHEVEP 164

Query: 268 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGL 327
            A     +++ AL+  L   + +    + D        +   +++  S+ L Y       
Sbjct: 165 MATECDHIQITALSQALSIALQVE---YVDEMDTALNHHVFPEAATPSVYLLYK------ 215

Query: 328 GEHYNSVIP 336
             HYN +  
Sbjct: 216 TSHYNILYA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.88

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-23  Score=189.27  Aligned_cols=97  Identities=23%  Similarity=0.394  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hcCCcccccHHHHHHHHHhhcccEEEEECCCCc
Q 019666          219 QQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPD  297 (337)
Q Consensus       219 ~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~~  297 (337)
                      ..||.+++.||+.|++.|.||+.++            .++++||.+ |..+++|||++||.|||++|+++|.|+..+.+.
T Consensus       127 ~~lR~l~s~~i~~~~~~y~~Fi~~~------------~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~  194 (228)
T d1tffa_         127 QFLRLLTSAFIRNRADFFRHFIDEE------------MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD  194 (228)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTT------------SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC---
T ss_pred             HHHHHHHHHHHHHCHHHHHhHhcCC------------ccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCC
Confidence            3589999999999999999999652            368999986 899999999999999999999999999987654


Q ss_pred             eEeCC-CcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 019666          298 VEMGK-EYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  337 (337)
Q Consensus       298 ~~ig~-ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p~  337 (337)
                      ..+.. .|.    ....++|+|+|.      ++|||+|+|.
T Consensus       195 ~~~~~~~~~----~~~~~~I~Lly~------pgHYdiLY~~  225 (228)
T d1tffa_         195 TALNHHVFP----EAATPSVYLLYK------TSHYNILYAA  225 (228)
T ss_dssp             ----CCCCC----CCSSCSEEEEEE------TTEEEEEEEC
T ss_pred             CccccccCC----CCCCCEEEEEeC------CCCcccCccC
Confidence            33321 221    234678999997      4699999984