Citrus Sinensis ID: 019669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
Secondary Structure (PSIPRED)
cccEEEcccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEEEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mmaiersncfhskgdknpchmnsnpymIAFGIVEIVlsqipdfdqLWWLSIVAAVMSFTYSTIGLGLGIAKVaetgkfrgsltgisigtVSETQKIWRSFQALGDIAFAYSYSIILIEIqdtvksppsesktmkkaSLISVGVTTLFYMLCGCfgyaafgdlspgnlltgfgfynpywllDIANAAIVIHLVGAYQVFCQPLFAFIEKqahqrfpdsefitkdikvpipgfkcynlnlfRLVWRTIFVILTTVISMLLPFFNDVVGLLgalgfwpltvyFPVEMYIAqkkipkwstKWLCLQILSVACLIITIAAAAGSIAGVVTDlksykpfstsy
Flexible Loop (DISEMBL)
mmaiersncfhskgdknpCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
Low Complexity Region (SEG)
MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLiitiaaaagsiagvvtDLKSYKPFSTSY
Disordered region (IsUnstruct)
********************MNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDT**************SLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKS********
Disordered Region (DISOPRED)
*MAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKS*PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
Disordered Region (DISEMBL)
MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV***********KASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
Disordered Region (DISPRO)
*MAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPF****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q39134	476	Amino acid permease 3 OS=	yes	no	1.0	0.707	0.830	1e-165
Q38967	493	Amino acid permease 2 OS=	no	no	1.0	0.683	0.742	1e-157
Q9FN04	466	Amino acid permease 4 OS=	no	no	1.0	0.723	0.748	1e-155
Q8GUM3	480	Amino acid permease 5 OS=	no	no	1.0	0.702	0.699	1e-148
Q42400	485	Amino acid permease 1 OS=	no	no	1.0	0.694	0.565	1e-120
P92934	481	Amino acid permease 6 OS=	no	no	0.988	0.692	0.589	1e-116
O80592	475	Amino acid permease 8 OS=	no	no	0.988	0.701	0.565	1e-114
Q9FF99	467	Probable amino acid perme	no	no	0.949	0.685	0.512	1e-88
Q9LRB5	441	Lysine histidine transpor	no	no	0.827	0.632	0.297	2e-27
Q9C733	453	Lysine histidine transpor	no	no	0.875	0.651	0.286	2e-27

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/337 (83%), Positives = 312/337 (92%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G K+PCHMNSNPYMIAFG+V+I+ SQIPDFDQLWWLSI+AAVMSFTY
Sbjct: 140 MMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTY 199

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           S+ GL LGIA+V   GK +GSLTGISIG V+ETQKIWR+FQALGDIAFAYSYSIILIEIQ
Sbjct: 200 SSAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQ 259

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DTVKSPPSE KTMKKA+L+SV VTT+FYMLCGC GYAAFGDLSPGNLLTGFGFYNPYWLL
Sbjct: 260 DTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLL 319

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIANAAIVIHL+GAYQV+CQPLFAFIEKQA  +FPDSEFI KDIK+PIPGFK   LN+FR
Sbjct: 320 DIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFR 379

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           L+WRT+FVI+TTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIP+WST+W+C
Sbjct: 380 LIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVC 439

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQ+ S+ CL+++IAAAAGSIAGV+ DLKSYKPF + Y
Sbjct: 440 LQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRSEY 476

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  553 bits (1426), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 251/338 (74%), Positives = 303/338 (89%), Gaps = 1/338 (0%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G K+PCHM+SNPYMI FG+ EI+LSQ+PDFDQ+WW+SIVAAVMSFTY
Sbjct: 156 MMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTY 215

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           S IGL LGI +VA  G F+GSLTGISIGTV++TQKIWR+FQALGDIAFAYSYS++LIEIQ
Sbjct: 216 SAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 275

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DTV+SPP+ESKTMKKA+ IS+ VTT+FYMLCG  GYAAFGD +PGNLLTGFGFYNP+WLL
Sbjct: 276 DTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLL 335

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKC-YNLNLF 239
           DIANAAIV+HLVGAYQVF QP+FAFIEK   +R+PD++F++K+ ++ IPGFK  Y +N+F
Sbjct: 336 DIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVF 395

Query: 240 RLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWL 299
           R+V+R+ FV+ TTVISML+PFFNDVVG+LGALGFWPLTVYFPVEMYI Q+K+ KWST+W+
Sbjct: 396 RMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWV 455

Query: 300 CLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           CLQ+LSVACL+I++ A  GSIAGV+ DLK YKPF ++Y
Sbjct: 456 CLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKSTY 493

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 253/338 (74%), Positives = 296/338 (87%), Gaps = 1/338 (0%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G KNPCHM+SNPYMI FG+ EI+LSQI DFDQ+WWLSIVAA+MSFTY
Sbjct: 129 MMAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTY 188

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           S IGL LGI +VA  G  +GSLTGISIG V++TQKIWR+FQALGDIAFAYSYS++LIEIQ
Sbjct: 189 SAIGLALGIIQVAANGVVKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 248

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DTV+SPP+ESKTMK A+ IS+ VTT FYMLCGC GYAAFGD +PGNLLTGFGFYNP+WLL
Sbjct: 249 DTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLL 308

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKC-YNLNLF 239
           D+ANAAIVIHLVGAYQVF QP+FAFIEKQA  RFPDS+ +TK+ ++ IPGF+  Y +N+F
Sbjct: 309 DVANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVF 368

Query: 240 RLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWL 299
           R V+R+ FV+LTTVISML+PFFNDVVG+LGALGFWPLTVYFPVEMYI Q+K+ +WS KW+
Sbjct: 369 RAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWV 428

Query: 300 CLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           CLQ+LS  CL+IT+ A  GSIAGV+ DLK YKPF T+Y
Sbjct: 429 CLQMLSCGCLMITLVAGVGSIAGVMLDLKVYKPFKTTY 466

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  523 bits (1346), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 294/343 (85%), Gaps = 6/343 (1%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           ++AI+R++C    G  +PCH+N N YMIAFGIV+I+ SQIPDFDQLWWLSIVAAVMSF Y
Sbjct: 138 LVAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAY 197

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVS------ETQKIWRSFQALGDIAFAYSYSI 114
           S IGLGLG++KV E  + +GSLTG+++GTV+       +QKIWR+FQ+LG+IAFAYSYS+
Sbjct: 198 SAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSM 257

Query: 115 ILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFY 174
           ILIEIQDTVKSPP+E  TM+KA+ +SV VTT+FYMLCGC GYAAFGD +PGNLL   GF 
Sbjct: 258 ILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFR 317

Query: 175 NPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCY 234
           NPYWLLDIAN AIVIHLVGAYQV+CQPLFAF+EK+A +RFP+SEF+TK+IK+ +   K +
Sbjct: 318 NPYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQLFPGKPF 377

Query: 235 NLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKW 294
           NLNLFRLVWRT FV+ TT+ISML+PFFNDVVGLLGA+GFWPLTVYFPVEMYIAQK +P+W
Sbjct: 378 NLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRW 437

Query: 295 STKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
            TKW+CLQ+LSV CL +++AAAAGS+ G+V+DLK YKPF + +
Sbjct: 438 GTKWVCLQVLSVTCLFVSVAAAAGSVIGIVSDLKVYKPFQSEF 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 191/338 (56%), Positives = 269/338 (79%), Gaps = 1/338 (0%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           ++A+ +SNCFH KG    C +++ PYM  FGI++++LSQIP+F +L +LSI+AAVMSFTY
Sbjct: 147 LVAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTY 206

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILIEI 119
           +TIG+GL IA VA     + S+TG ++G  V+  QKIWRSFQA+GDIAFAY+Y+ +LIEI
Sbjct: 207 ATIGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEI 266

Query: 120 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWL 179
           QDT++S P+E+K MK+ASL+ V  TT FY+LCGC GYAAFG+ +PG+ LT FGF+ P+WL
Sbjct: 267 QDTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWL 326

Query: 180 LDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLF 239
           +D ANA I +HL+GAYQVF QP+F F+EK+ ++ +PD++FIT +  V +P    +N++LF
Sbjct: 327 IDFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLF 386

Query: 240 RLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWL 299
           RLVWRT +V++TTV++M+ PFFN ++GL+GA  FWPLTVYFPVEM+IAQ KI K+S +W+
Sbjct: 387 RLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWI 446

Query: 300 CLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
            L+ +   CLI+++ AAAGSIAG+++ +K+YKPF T +
Sbjct: 447 ALKTMCYVCLIVSLLAAAGSIAGLISSVKTYKPFRTMH 484

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/336 (58%), Positives = 265/336 (78%), Gaps = 3/336 (0%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           M+A++RSNCFH  G    C  ++ P+MI F I++I+LSQIP+F  L WLSI+AAVMSF Y
Sbjct: 143 MVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCY 202

Query: 61  STIGLGLGIAKVAETGKF-RGSLTGISIG-TVSETQKIWRSFQALGDIAFAYSYSIILIE 118
           ++IG+GL IAK A  G+  R +LTG+++G  VS  +KIWR+FQA+GDIAFAY+YS +LIE
Sbjct: 203 ASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIE 262

Query: 119 IQDTVKS-PPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPY 177
           IQDT+K+ PPSE+K MK+ASL+ V  TT FYMLCGC GYAAFG+ +PGN LTGFGFY P+
Sbjct: 263 IQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPF 322

Query: 178 WLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLN 237
           WL+D AN  I +HL+GAYQVFCQP+F F+E Q+ +R+PD++FIT + K+ +P    +++N
Sbjct: 323 WLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSIN 382

Query: 238 LFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTK 297
             RLVWRT +V++T V++M+ PFFND +GL+GA  FWPLTVYFP+EM+IAQKKIPK+S  
Sbjct: 383 FLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFT 442

Query: 298 WLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPF 333
           W  L+ILS  C I+++ AAAGS+ G++  LK +KPF
Sbjct: 443 WTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPF 478

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/338 (56%), Positives = 261/338 (77%), Gaps = 5/338 (1%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           ++AI +SNC+H KG K  C +++ PYM AFGIV+I+LSQ+P+F +L +LSI+AAVMSF+Y
Sbjct: 138 LVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSY 197

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILIEI 119
           ++IG+GL IA VA     +  LTG  IG  V+ ++K+W+ FQA+GDIAF+Y+++ ILIEI
Sbjct: 198 ASIGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEI 257

Query: 120 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWL 179
           QDT++S P E+K MK+ASL+ V  TT+FY+LCGC GYAAFG+ +PG+ LT FGFY PYWL
Sbjct: 258 QDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWL 317

Query: 180 LDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDI--KVPIPGFKCYNLN 237
           +D ANA I +HL+GAYQV+ QP F F+E+  ++++P S FI K+   KVP+ G KC  +N
Sbjct: 318 IDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLG-KC-RVN 375

Query: 238 LFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTK 297
           LFRLVWRT +V+LTT ++M+ PFFN ++GLLGA  FWPLTVYFPV M+IAQ K+ K+S +
Sbjct: 376 LFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRR 435

Query: 298 WLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFST 335
           WL L +L + CLI++  AA GSI G++  +KSYKPF  
Sbjct: 436 WLALNLLVLVCLIVSALAAVGSIIGLINSVKSYKPFKN 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  326 bits (836), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 167/326 (51%), Positives = 236/326 (72%), Gaps = 6/326 (1%)

Query: 3   AIERSNCFHSKGDKNPCHM--NSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           AI +SNC+H  G    C    N+N +M+ FG+ +I +SQIP+F  + WLS+VAA+MSFTY
Sbjct: 139 AIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTY 198

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           S IG+GL + K+ E  K  GS+ GI     +  +K+W  FQALG+IAF+Y +SIIL+EIQ
Sbjct: 199 SFIGIGLALGKIIENRKIEGSIRGIP--AENRGEKVWIVFQALGNIAFSYPFSIILLEIQ 256

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DT++SPP+E +TMKKAS ++V + T F+  CGCFGYAAFGD +PGNLLTGFGFY P+WL+
Sbjct: 257 DTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLV 316

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITK--DIKVPIPGFKCYNLNL 238
           D ANA IV+HLVG YQV+ QP+FA  E+   +++P+++FI +    K+P+   +   LN 
Sbjct: 317 DFANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNP 376

Query: 239 FRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKW 298
            R+  RT++V++TT ++++ P+FN+V+G++GAL FWPL VYFPVEM I QKKI  W+  W
Sbjct: 377 MRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPW 436

Query: 299 LCLQILSVACLIITIAAAAGSIAGVV 324
           L L+  S  CL++ + +  GSI G+V
Sbjct: 437 LLLRGFSFVCLLVCLLSLVGSIYGLV 462

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 157/316 (49%), Gaps = 37/316 (11%)

Query: 26  YMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI 85
           +++ F  V  V+S +P+F+ +  +S+ AAVMS TYSTI     + K              
Sbjct: 156 WIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVHPDVDYSPRAST 215

Query: 86  SIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPS-ESKT-MKKASLISVGV 143
            +G      K++    ALGD+AFAY+   +++EIQ T+ S P   SK  M +  +++  V
Sbjct: 216 DVG------KVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIV 269

Query: 144 TTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLF 203
             + Y      GY  FG+    N+L       P WL+ +AN  +VIH++G+YQ+F  P+F
Sbjct: 270 VAICYFPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVF 327

Query: 204 AFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFND 263
             +E    ++   +           P FK       R + R+++V  T ++++ +PFF  
Sbjct: 328 DMLETVLVKKMNFN-----------PSFK------LRFITRSLYVAFTMIVAICVPFFGG 370

Query: 264 VVGLLGALGFWPLTVYFPVEMYIAQKKIPK-----WSTKWLCLQILSVACLIITIAAAAG 318
           ++G  G   F P T Y P  M++  KK PK     W+  W C+    +  +++TI A  G
Sbjct: 371 LLGFFGGFAFAPTTYYLPCIMWLVLKK-PKRFGLSWTANWFCI----IVGVLLTILAPIG 425

Query: 319 SIAGVVTDLKSYKPFS 334
            +  ++ + K+YK FS
Sbjct: 426 GLRTIIINAKTYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 157/332 (47%), Gaps = 37/332 (11%)

Query: 10  FHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGI 69
           FH    ++   +  + +++ F     VLS +P+F+ +  +S+VAAVMS +YSTI      
Sbjct: 152 FHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSYSTIAWTATA 211

Query: 70  AKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSE 129
           AK  +     G  +G +  TV         F  LG IAFAY+   +++EIQ T+ S PS 
Sbjct: 212 AKGVQEDVQYGYKSGTTASTVLSF------FTGLGGIAFAYAGHNVVLEIQATIPSTPSN 265

Query: 130 SKT--MKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAI 187
                M +  +++  V  L Y      GY  FG+    N+L       P W +  AN  +
Sbjct: 266 PSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVL--MSLETPVWAIATANLFV 323

Query: 188 VIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIF 247
           V+H++G+YQ+F  P+F  +E           F+ K +      FK   +   R + R ++
Sbjct: 324 VMHVIGSYQIFAMPVFDMVET----------FLVKKLN-----FKPSTV--LRFIVRNVY 366

Query: 248 VILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPK-----WSTKWLCLQ 302
           V LT  I +++PFF  ++   G   F P + + P  M++   K PK     W T W+C+ 
Sbjct: 367 VALTMFIGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWLLIYK-PKRFSLSWWTNWVCI- 424

Query: 303 ILSVACLIITIAAAAGSIAGVVTDLKSYKPFS 334
              V  +++ I ++ G +  ++   K Y  FS
Sbjct: 425 ---VLGVVLMILSSIGGLRQIIIQSKDYSFFS 453

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
224093533	480	amino acid permease [Populus trichocarpa	1.0	0.702	0.845	1e-170
224066805	480	amino acid permease [Populus trichocarpa	1.0	0.702	0.845	1e-169
224143196	480	amino acid permease [Populus trichocarpa	1.0	0.702	0.839	1e-168
224106788	485	amino acid permease [Populus trichocarpa	1.0	0.694	0.836	1e-168
147811503	481	hypothetical protein VITISV_005276 [Viti	1.0	0.700	0.866	1e-168
359492379	483	PREDICTED: amino acid permease 2 [Vitis	1.0	0.697	0.866	1e-168
225459639	484	PREDICTED: amino acid permease 2 isoform	1.0	0.696	0.866	1e-167
255558596	486	amino acid transporter, putative [Ricinu	1.0	0.693	0.857	1e-166
255558594	485	amino acid transporter, putative [Ricinu	1.0	0.694	0.860	1e-166
224083500	463	amino acid permease [Populus trichocarpa	1.0	0.727	0.816	1e-165

>gi|224093533|ref|XP_002334831.1| amino acid permease [Populus trichocarpa] gi|222875165|gb|EEF12296.1| amino acid permease [Populus trichocarpa]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/337 (84%), Positives = 314/337 (93%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G ++PCHMN+ PYMI FGI EI+LSQIP FDQL WLS+VAAVMSFTY
Sbjct: 144 MMAIKRSNCFHKSGGQDPCHMNAYPYMIGFGIAEILLSQIPGFDQLHWLSLVAAVMSFTY 203

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           S+IGLGLGI KV E GK  GSLTGISIGTV++TQKIW+SFQALGDIAFAYS+S+IL+EIQ
Sbjct: 204 SSIGLGLGIGKVIENGKISGSLTGISIGTVTQTQKIWKSFQALGDIAFAYSFSMILVEIQ 263

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DT+K+PPSE+KTMKKA+LISV VTT FYM CGCFGYAAFGDLSPGNLLTGFGFYNPYWLL
Sbjct: 264 DTIKAPPSEAKTMKKATLISVVVTTFFYMFCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 323

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIANAAIVIHLVGAYQV CQPL+AFIEK+A QRFPDSEFITKDIK+PIPGF+ YNLNLFR
Sbjct: 324 DIANAAIVIHLVGAYQVSCQPLYAFIEKEAAQRFPDSEFITKDIKIPIPGFRPYNLNLFR 383

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           ++WRT+FV+LTTVISMLLPFFND+VGLLGALGFWPLTVYFPVEMYI QKKIPKWST+WLC
Sbjct: 384 MIWRTLFVVLTTVISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIVQKKIPKWSTRWLC 443

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQILSVACLIITIAAAAGS+AG+V DLKS KPF TSY
Sbjct: 444 LQILSVACLIITIAAAAGSVAGIVGDLKSIKPFQTSY 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066805|ref|XP_002302224.1| amino acid permease [Populus trichocarpa] gi|222843950|gb|EEE81497.1| amino acid permease [Populus trichocarpa]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/337 (84%), Positives = 313/337 (92%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G ++PCHMN+ PYMI FGI EI+LSQIP FDQL WLS+VAAVMSFTY
Sbjct: 144 MMAIKRSNCFHKSGGQDPCHMNAYPYMIGFGIAEILLSQIPGFDQLHWLSLVAAVMSFTY 203

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           S+IGLGLGI KV E GK  GSLTGISIGTV++TQKIW SFQALG+IAFAYS+S+IL+EIQ
Sbjct: 204 SSIGLGLGIGKVIENGKISGSLTGISIGTVTQTQKIWMSFQALGNIAFAYSFSMILVEIQ 263

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DT+KSPPSE+KTMKKA+LISV VTTLFYM CGCFGYAAFGDLSPGNLLTGFGFYNPYWLL
Sbjct: 264 DTIKSPPSEAKTMKKATLISVVVTTLFYMFCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 323

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIANAAIVIHLVGAYQV CQPL+AFIEK+A QRFPDSEFITKDI +PIPGF+ YNLNLFR
Sbjct: 324 DIANAAIVIHLVGAYQVSCQPLYAFIEKEAAQRFPDSEFITKDINIPIPGFRPYNLNLFR 383

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           ++WRT+FV+LTTVISMLLPFFND+VGLLGALGFWPLTVYFPVEMYI QKKIPKWST+WLC
Sbjct: 384 MIWRTLFVVLTTVISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIVQKKIPKWSTRWLC 443

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQILSVACLIITIAAAAGS+AG+V DLKS KPF TSY
Sbjct: 444 LQILSVACLIITIAAAAGSVAGIVGDLKSIKPFQTSY 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143196|ref|XP_002336005.1| amino acid permease [Populus trichocarpa] gi|222838437|gb|EEE76802.1| amino acid permease [Populus trichocarpa]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 283/337 (83%), Positives = 311/337 (92%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G ++PCHMN+ PYMI FGI EI+LSQIP FDQL WLS+VAAVMSFTY
Sbjct: 144 MMAIKRSNCFHKSGGQDPCHMNAYPYMIGFGIAEILLSQIPGFDQLHWLSLVAAVMSFTY 203

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           S+IGLGLGI KV E  +  GSLTGISIGTV++TQKIWRSFQALGDIAFAYSYS+ILIEIQ
Sbjct: 204 SSIGLGLGIGKVVENKRVMGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSMILIEIQ 263

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DTVK+PP+E+KTMKKA+LISV VTTLFYM CGCFGYAAFGDLSPGNLLTGFGFYNPYWLL
Sbjct: 264 DTVKAPPTEAKTMKKATLISVAVTTLFYMFCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 323

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIANAAIVIHLVG YQ  CQPL+AFIEK+A QRFPDSEFITKDIK+PIPGF+ YNLNLFR
Sbjct: 324 DIANAAIVIHLVGIYQFSCQPLYAFIEKEAAQRFPDSEFITKDIKIPIPGFRPYNLNLFR 383

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           ++WRT+FV+LTTVISMLLPFFND+VGLLGALGFWPLTVYFPVEMYI QKKI KWST+WLC
Sbjct: 384 MIWRTLFVVLTTVISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIVQKKIRKWSTRWLC 443

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQILSVACLII+IAAAAGS+AG+V DLKS KPF TSY
Sbjct: 444 LQILSVACLIISIAAAAGSVAGIVGDLKSIKPFQTSY 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106788|ref|XP_002333631.1| amino acid permease [Populus trichocarpa] gi|222837854|gb|EEE76219.1| amino acid permease [Populus trichocarpa]

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/337 (83%), Positives = 311/337 (92%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G ++PCHMN+ PYMIAFGI EI+LSQIP FDQL WLS+VAAVMSFTY
Sbjct: 149 MMAIKRSNCFHQSGGQDPCHMNAYPYMIAFGIAEILLSQIPGFDQLHWLSLVAAVMSFTY 208

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           S+IGLGLGI KV E  +  GSLTGISIGTV++TQKIWRSFQALGDIAFAYSYS+ILIEIQ
Sbjct: 209 SSIGLGLGIGKVVENKRVMGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSMILIEIQ 268

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DTVK+PP+E+KTMKKA+LISV VTTLFYM CGCFGYAAFGDLSPGNLLTGFGFYNPYWLL
Sbjct: 269 DTVKAPPTEAKTMKKATLISVAVTTLFYMFCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 328

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIANAA+VIHLVG YQ  CQPL+AFIEK+A QRFPDSEFITKDIK+PIPGF+ YNLNLFR
Sbjct: 329 DIANAAMVIHLVGIYQFSCQPLYAFIEKEAAQRFPDSEFITKDIKIPIPGFRPYNLNLFR 388

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           ++WRT+FV+LTTVISMLLPFFND+V LLGALGFWPLTVYFPVEMYI QKKI KWST+WLC
Sbjct: 389 MIWRTLFVVLTTVISMLLPFFNDIVRLLGALGFWPLTVYFPVEMYIVQKKIRKWSTRWLC 448

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQILSVACLII+IAAAAGS+AG+V DLKS KPF TSY
Sbjct: 449 LQILSVACLIISIAAAAGSVAGIVGDLKSIKPFQTSY 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811503|emb|CAN61092.1| hypothetical protein VITISV_005276 [Vitis vinifera] gi|302141776|emb|CBI18979.3| unnamed protein product [Vitis vinifera]

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/337 (86%), Positives = 320/337 (94%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH   DKNPCH++SNPYMI FGI EI+LSQIPDFDQ+WWLSIVAA+MSF Y
Sbjct: 145 MMAIKRSNCFHESHDKNPCHISSNPYMIMFGIFEIILSQIPDFDQIWWLSIVAAIMSFAY 204

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           STIGLGLG+AKVAE+GKFRGSLTGISIGTV++TQKIWRSFQALG+IAFAYSYSIILIEIQ
Sbjct: 205 STIGLGLGVAKVAESGKFRGSLTGISIGTVTQTQKIWRSFQALGNIAFAYSYSIILIEIQ 264

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DT+KSPPSE KTMKKA+L+SV VTTLFYMLCGC GYAAFGDL+PGNLLTGFGFYNPYWLL
Sbjct: 265 DTIKSPPSEKKTMKKATLLSVIVTTLFYMLCGCMGYAAFGDLAPGNLLTGFGFYNPYWLL 324

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIANAAIVIHLVGAYQV+CQPLFAFIEK A ++FPDS+FITK+IK+PIPGFK YNLNLFR
Sbjct: 325 DIANAAIVIHLVGAYQVYCQPLFAFIEKWAAEKFPDSQFITKEIKIPIPGFKPYNLNLFR 384

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           LVWRTIFVI+TTVISML+PFFNDVVG+LGA GFWPLTVYFPVEMYIAQKKIPKWST+WLC
Sbjct: 385 LVWRTIFVIITTVISMLMPFFNDVVGILGAFGFWPLTVYFPVEMYIAQKKIPKWSTRWLC 444

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQILS ACLII+IAAAAGS+AGV+ DLK YKPF TSY
Sbjct: 445 LQILSFACLIISIAAAAGSVAGVILDLKVYKPFKTSY 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492379|ref|XP_003634405.1| PREDICTED: amino acid permease 2 [Vitis vinifera]

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/337 (86%), Positives = 320/337 (94%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH   DKNPCH++SNPYMI FGI EI+LSQIPDFDQ+WWLSIVAA+MSF Y
Sbjct: 147 MMAIKRSNCFHESHDKNPCHISSNPYMIMFGIFEIILSQIPDFDQIWWLSIVAAIMSFAY 206

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           STIGLGLG+AKVAE+GKFRGSLTGISIGTV++TQKIWRSFQALG+IAFAYSYSIILIEIQ
Sbjct: 207 STIGLGLGVAKVAESGKFRGSLTGISIGTVTQTQKIWRSFQALGNIAFAYSYSIILIEIQ 266

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DT+KSPPSE KTMKKA+L+SV VTTLFYMLCGC GYAAFGDL+PGNLLTGFGFYNPYWLL
Sbjct: 267 DTIKSPPSEKKTMKKATLLSVIVTTLFYMLCGCMGYAAFGDLAPGNLLTGFGFYNPYWLL 326

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIANAAIVIHLVGAYQV+CQPLFAFIEK A ++FPDS+FITK+IK+PIPGFK YNLNLFR
Sbjct: 327 DIANAAIVIHLVGAYQVYCQPLFAFIEKWAAEKFPDSQFITKEIKIPIPGFKPYNLNLFR 386

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           LVWRTIFVI+TTVISML+PFFNDVVG+LGA GFWPLTVYFPVEMYIAQKKIPKWST+WLC
Sbjct: 387 LVWRTIFVIITTVISMLMPFFNDVVGILGAFGFWPLTVYFPVEMYIAQKKIPKWSTRWLC 446

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQILS ACLII+IAAAAGS+AGV+ DLK YKPF TSY
Sbjct: 447 LQILSFACLIISIAAAAGSVAGVILDLKVYKPFKTSY 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459639|ref|XP_002285879.1| PREDICTED: amino acid permease 2 isoform 2 [Vitis vinifera]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 292/337 (86%), Positives = 320/337 (94%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH   DKNPCH++SNPYMI FGI EI+LSQIPDFDQ+WWLSIVAA+MSF Y
Sbjct: 148 MMAIKRSNCFHESHDKNPCHISSNPYMIMFGIFEIILSQIPDFDQIWWLSIVAAIMSFAY 207

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           STIGLGLG+AKVAE+GKFRGSLTGISIGTV++TQKIWRSFQALG+IAFAYSYSIILIEIQ
Sbjct: 208 STIGLGLGVAKVAESGKFRGSLTGISIGTVTQTQKIWRSFQALGNIAFAYSYSIILIEIQ 267

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DT+KSPPSE KTMKKA+L+SV VTTLFYMLCGC GYAAFGDL+PGNLLTGFGFYNPYWLL
Sbjct: 268 DTIKSPPSEKKTMKKATLLSVIVTTLFYMLCGCMGYAAFGDLAPGNLLTGFGFYNPYWLL 327

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIANAAIVIHLVGAYQV+CQPLFAFIEK A ++FPDS+FITK+IK+PIPGFK YNLNLFR
Sbjct: 328 DIANAAIVIHLVGAYQVYCQPLFAFIEKWAAEKFPDSQFITKEIKIPIPGFKPYNLNLFR 387

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           LVWRTIFVI+TTVISML+PFFNDVVG+LGA GFWPLTVYFPVEMYIAQKKIPKWST+WLC
Sbjct: 388 LVWRTIFVIITTVISMLMPFFNDVVGILGAFGFWPLTVYFPVEMYIAQKKIPKWSTRWLC 447

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQILS ACLII+IAAAAGS+AGV+ DLK YKPF TSY
Sbjct: 448 LQILSFACLIISIAAAAGSVAGVILDLKVYKPFKTSY 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558596|ref|XP_002520323.1| amino acid transporter, putative [Ricinus communis] gi|3293031|emb|CAA07563.1| amino acid carrier [Ricinus communis] gi|223540542|gb|EEF42109.1| amino acid transporter, putative [Ricinus communis]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/338 (85%), Positives = 314/338 (92%), Gaps = 1/338 (0%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G KNPCH+N+NPYMIAFGI EI+ SQIPDFDQLWWLSI+AAVMSFTY
Sbjct: 149 MMAIKRSNCFHKSGGKNPCHINANPYMIAFGIAEIIFSQIPDFDQLWWLSILAAVMSFTY 208

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIG-TVSETQKIWRSFQALGDIAFAYSYSIILIEI 119
           STIGLGLGIA+V E GK  GS+TGISIG  V+ TQKIWRSFQALGDIAFAYSYSIILIEI
Sbjct: 209 STIGLGLGIAQVVENGKAMGSVTGISIGANVTPTQKIWRSFQALGDIAFAYSYSIILIEI 268

Query: 120 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWL 179
           QDTV+SPPSESKTMKKA+LISV VTTLFYMLCGCFGYAAFGD+SPGNLLTGFGFYNPYWL
Sbjct: 269 QDTVRSPPSESKTMKKATLISVAVTTLFYMLCGCFGYAAFGDMSPGNLLTGFGFYNPYWL 328

Query: 180 LDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLF 239
           LDIAN AIV+HLVGAYQV+CQPLFAF+EK A QR+PDS FITKDIK+P+PGF+ +NLNLF
Sbjct: 329 LDIANVAIVVHLVGAYQVYCQPLFAFVEKAAAQRYPDSGFITKDIKIPVPGFRPFNLNLF 388

Query: 240 RLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWL 299
           R VWRT+FV+ TTVISMLLPFFND+VGLLGALGFWPLTVYFPVEMYIAQKKIPKWST+WL
Sbjct: 389 RSVWRTLFVVFTTVISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTRWL 448

Query: 300 CLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           CLQILS ACL+ITIAAAAGSIAGVV DLKS KPF TSY
Sbjct: 449 CLQILSAACLVITIAAAAGSIAGVVGDLKSVKPFQTSY 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558594|ref|XP_002520322.1| amino acid transporter, putative [Ricinus communis] gi|223540541|gb|EEF42108.1| amino acid transporter, putative [Ricinus communis]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/337 (86%), Positives = 318/337 (94%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMA++RSNCFH  G KNPCHMN+NPYMIAFG+VEI+ SQIPDFDQLWWLSIVAA+MSFTY
Sbjct: 149 MMAVKRSNCFHKSGGKNPCHMNANPYMIAFGVVEIIFSQIPDFDQLWWLSIVAAIMSFTY 208

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           STIGLGLGIA+V + GK  GS+TGISIGTV+ETQKIWRSFQALGDIAFAYSYS+ILIEIQ
Sbjct: 209 STIGLGLGIAEVTKNGKAMGSMTGISIGTVTETQKIWRSFQALGDIAFAYSYSLILIEIQ 268

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DT++SPP+ESKTM+KA+LISV VTTLFYMLCGCFGYAAFGD+SPGNLLTGFGFYNPYWLL
Sbjct: 269 DTIRSPPAESKTMRKATLISVSVTTLFYMLCGCFGYAAFGDMSPGNLLTGFGFYNPYWLL 328

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIAN AIV+HLVGAYQV+CQPLFAF+EK A QRFPDSEFITKDIK+PIPG K YNLNLFR
Sbjct: 329 DIANVAIVVHLVGAYQVYCQPLFAFVEKAAVQRFPDSEFITKDIKIPIPGCKPYNLNLFR 388

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           +VWRT+FVI TTVISMLLPFFND+VGLLGALGFWPLTVYFPVEMYIAQKKIPKWST+WLC
Sbjct: 389 MVWRTVFVIFTTVISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTRWLC 448

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQILS ACLIITIAAAAGSIAGV+ DLK+ KPF T+Y
Sbjct: 449 LQILSAACLIITIAAAAGSIAGVIVDLKTVKPFQTTY 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083500|ref|XP_002307053.1| amino acid permease [Populus trichocarpa] gi|222856502|gb|EEE94049.1| amino acid permease [Populus trichocarpa]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/337 (81%), Positives = 310/337 (91%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           MMAI+RSNCFH  G +NPCH++SNPYMI FGI EI+LSQIPDFDQLWWLSIVAAVMSFTY
Sbjct: 127 MMAIKRSNCFHQSGGQNPCHISSNPYMIIFGITEILLSQIPDFDQLWWLSIVAAVMSFTY 186

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
           STIGLGLGI KVA  G F+GSLTGISIGTV+ET+KIWRSFQALG IAFAYSYS+ILIEIQ
Sbjct: 187 STIGLGLGIGKVAANGTFKGSLTGISIGTVTETEKIWRSFQALGAIAFAYSYSVILIEIQ 246

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           DT+KSPP+ESKTMKKA+ IS+ VTT FYMLCGC GYAAFGD +PGNLLTGFGFYNPYWL+
Sbjct: 247 DTIKSPPAESKTMKKAAKISIVVTTTFYMLCGCMGYAAFGDQAPGNLLTGFGFYNPYWLI 306

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIAN AIVIHL+GAYQVFCQPLFAFIEK A+Q++P++ FITK+ K+P+PGF+ Y LNLFR
Sbjct: 307 DIANVAIVIHLIGAYQVFCQPLFAFIEKWANQKWPENYFITKEFKIPVPGFRPYKLNLFR 366

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           +VWRTIFV+LTTVISMLLPFFNDVVG+LGALGFWPLTVYFPVEMYI QKKIPKWST+W+C
Sbjct: 367 MVWRTIFVLLTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIVQKKIPKWSTRWIC 426

Query: 301 LQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 337
           LQ+LS+ACL+I++ A AGSIAGVV DLK YKPF TSY
Sbjct: 427 LQMLSMACLVISLVAVAGSIAGVVLDLKVYKPFKTSY 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	1.0	0.707	0.798	1.6e-150
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	1.0	0.683	0.718	2.4e-138
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	1.0	0.723	0.721	2.5e-136
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.997	0.7	0.680	5.7e-130
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.988	0.692	0.568	7.2e-107
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.997	0.692	0.542	5.8e-105
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.979	0.694	0.551	6.9e-102
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.905	0.653	0.524	1.7e-89
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.540	0.412	0.355	5.9e-37
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.516	0.394	0.326	1.4e-32

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1469 (522.2 bits), Expect = 1.6e-150, P = 1.6e-150
 Identities = 269/337 (79%), Positives = 297/337 (88%)

Query:     1 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
             MMAI+RSNCFH  G K+PCHMNSNPYMIAFG+V+I+ SQIPDFDQLWWLSI+AAVMSFTY
Sbjct:   140 MMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTY 199

Query:    61 STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
             S+ GL LGIA+V   GK +GSLTGISIG V+ETQKIWR+FQALGDIAFAYSYSIILIEIQ
Sbjct:   200 SSAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQ 259

Query:   121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
             DTVKSPPSE KTMKKA+L+SV VTT+FYMLCGC GYAAFGDLSPGNLLTGFGFYNPYWLL
Sbjct:   260 DTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLL 319

Query:   181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
             DIANAAIVIHL+GAYQV+CQPLFAFIEKQA  +FPDSEFI KDIK+PIPGFK   LN+FR
Sbjct:   320 DIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFR 379

Query:   241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
             L+WRT+FVI+TTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIP+WST+W+C
Sbjct:   380 LIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVC 439

Query:   301 LQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 337
             LQ+ S+ CL                DLKSYKPF + Y
Sbjct:   440 LQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRSEY 476

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
 Identities = 243/338 (71%), Positives = 291/338 (86%)

Query:     1 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
             MMAI+RSNCFH  G K+PCHM+SNPYMI FG+ EI+LSQ+PDFDQ+WW+SIVAAVMSFTY
Sbjct:   156 MMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTY 215

Query:    61 STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
             S IGL LGI +VA  G F+GSLTGISIGTV++TQKIWR+FQALGDIAFAYSYS++LIEIQ
Sbjct:   216 SAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 275

Query:   121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
             DTV+SPP+ESKTMKKA+ IS+ VTT+FYMLCG  GYAAFGD +PGNLLTGFGFYNP+WLL
Sbjct:   276 DTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLL 335

Query:   181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKC-YNLNLF 239
             DIANAAIV+HLVGAYQVF QP+FAFIEK   +R+PD++F++K+ ++ IPGFK  Y +N+F
Sbjct:   336 DIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVF 395

Query:   240 RLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWL 299
             R+V+R+ FV+ TTVISML+PFFNDVVG+LGALGFWPLTVYFPVEMYI Q+K+ KWST+W+
Sbjct:   396 RMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWV 455

Query:   300 CLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 337
             CLQ+LSVACL                DLK YKPF ++Y
Sbjct:   456 CLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKSTY 493

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
 Identities = 244/338 (72%), Positives = 284/338 (84%)

Query:     1 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
             MMAI+RSNCFH  G KNPCHM+SNPYMI FG+ EI+LSQI DFDQ+WWLSIVAA+MSFTY
Sbjct:   129 MMAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTY 188

Query:    61 STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
             S IGL LGI +VA  G  +GSLTGISIG V++TQKIWR+FQALGDIAFAYSYS++LIEIQ
Sbjct:   189 SAIGLALGIIQVAANGVVKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 248

Query:   121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
             DTV+SPP+ESKTMK A+ IS+ VTT FYMLCGC GYAAFGD +PGNLLTGFGFYNP+WLL
Sbjct:   249 DTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLL 308

Query:   181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKC-YNLNLF 239
             D+ANAAIVIHLVGAYQVF QP+FAFIEKQA  RFPDS+ +TK+ ++ IPGF+  Y +N+F
Sbjct:   309 DVANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVF 368

Query:   240 RLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWL 299
             R V+R+ FV+LTTVISML+PFFNDVVG+LGALGFWPLTVYFPVEMYI Q+K+ +WS KW+
Sbjct:   369 RAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWV 428

Query:   300 CLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 337
             CLQ+LS  CL                DLK YKPF T+Y
Sbjct:   429 CLQMLSCGCLMITLVAGVGSIAGVMLDLKVYKPFKTTY 466

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
 Identities = 234/344 (68%), Positives = 282/344 (81%)

Query:     1 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
             ++AI+R++C    G  +PCH+N N YMIAFGIV+I+ SQIPDFDQLWWLSIVAAVMSF Y
Sbjct:   138 LVAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAY 197

Query:    61 STIGLGLGIAKVAETGKFRGSLTGISIGTVS------ETQKIWRSFQALGDIAFAYSYSI 114
             S IGLGLG++KV E  + +GSLTG+++GTV+       +QKIWR+FQ+LG+IAFAYSYS+
Sbjct:   198 SAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSM 257

Query:   115 ILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFY 174
             ILIEIQDTVKSPP+E  TM+KA+ +SV VTT+FYMLCGC GYAAFGD +PGNLL   GF 
Sbjct:   258 ILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFR 317

Query:   175 NPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPI-PGFKC 233
             NPYWLLDIAN AIVIHLVGAYQV+CQPLFAF+EK+A +RFP+SEF+TK+IK+ + PG K 
Sbjct:   318 NPYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQLFPG-KP 376

Query:   234 YNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPK 293
             +NLNLFRLVWRT FV+ TT+ISML+PFFNDVVGLLGA+GFWPLTVYFPVEMYIAQK +P+
Sbjct:   377 FNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPR 436

Query:   294 WSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 337
             W TKW+CLQ+LSV CL                DLK YKPF + +
Sbjct:   437 WGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVSDLKVYKPFQSEF 480

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 191/336 (56%), Positives = 252/336 (75%)

Query:     1 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
             M+A++RSNCFH  G    C  ++ P+MI F I++I+LSQIP+F  L WLSI+AAVMSF Y
Sbjct:   143 MVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCY 202

Query:    61 STIGLGLGIAKVAETGKF-RGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILIE 118
             ++IG+GL IAK A  G+  R +LTG+++G  VS  +KIWR+FQA+GDIAFAY+YS +LIE
Sbjct:   203 ASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIE 262

Query:   119 IQDTVKS-PPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPY 177
             IQDT+K+ PPSE+K MK+ASL+ V  TT FYMLCGC GYAAFG+ +PGN LTGFGFY P+
Sbjct:   263 IQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPF 322

Query:   178 WLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLN 237
             WL+D AN  I +HL+GAYQVFCQP+F F+E Q+ +R+PD++FIT + K+ +P    +++N
Sbjct:   323 WLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSIN 382

Query:   238 LFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTK 297
               RLVWRT +V++T V++M+ PFFND +GL+GA  FWPLTVYFP+EM+IAQKKIPK+S  
Sbjct:   383 FLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFT 442

Query:   298 WLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPF 333
             W  L+ILS  C                  LK +KPF
Sbjct:   443 WTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPF 478

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 184/339 (54%), Positives = 256/339 (75%)

Query:     1 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
             ++A+ +SNCFH KG    C +++ PYM  FGI++++LSQIP+F +L +LSI+AAVMSFTY
Sbjct:   147 LVAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTY 206

Query:    61 STIGLGLGIAKVAETGKF-RGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILIE 118
             +TIG+GL IA VA  GK  + S+TG ++G  V+  QKIWRSFQA+GDIAFAY+Y+ +LIE
Sbjct:   207 ATIGIGLAIATVAG-GKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIE 265

Query:   119 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYW 178
             IQDT++S P+E+K MK+ASL+ V  TT FY+LCGC GYAAFG+ +PG+ LT FGF+ P+W
Sbjct:   266 IQDTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFW 325

Query:   179 LLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNL 238
             L+D ANA I +HL+GAYQVF QP+F F+EK+ ++ +PD++FIT +  V +P    +N++L
Sbjct:   326 LIDFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISL 385

Query:   239 FRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKW 298
             FRLVWRT +V++TTV++M+ PFFN ++GL+GA  FWPLTVYFPVEM+IAQ KI K+S +W
Sbjct:   386 FRLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARW 445

Query:   299 LCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 337
             + L+ +   CL                 +K+YKPF T +
Sbjct:   446 IALKTMCYVCLIVSLLAAAGSIAGLISSVKTYKPFRTMH 484

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 186/337 (55%), Positives = 253/337 (75%)

Query:     1 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
             ++AI +SNC+H KG K  C +++ PYM AFGIV+I+LSQ+P+F +L +LSI+AAVMSF+Y
Sbjct:   138 LVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSY 197

Query:    61 STIGLGLGIAKVAETGKF-RGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILIE 118
             ++IG+GL IA VA +GK  +  LTG  IG  V+ ++K+W+ FQA+GDIAF+Y+++ ILIE
Sbjct:   198 ASIGIGLAIATVA-SGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIE 256

Query:   119 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYW 178
             IQDT++S P E+K MK+ASL+ V  TT+FY+LCGC GYAAFG+ +PG+ LT FGFY PYW
Sbjct:   257 IQDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYW 316

Query:   179 LLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDI--KVPIPGFKCYNL 236
             L+D ANA I +HL+GAYQV+ QP F F+E+  ++++P S FI K+   KVP+ G KC  +
Sbjct:   317 LIDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLG-KC-RV 374

Query:   237 NLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWST 296
             NLFRLVWRT +V+LTT ++M+ PFFN ++GLLGA  FWPLTVYFPV M+IAQ K+ K+S 
Sbjct:   375 NLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSR 434

Query:   297 KWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPF 333
             +WL L +L + CL                 +KSYKPF
Sbjct:   435 RWLALNLLVLVCLIVSALAAVGSIIGLINSVKSYKPF 471

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 163/311 (52%), Positives = 225/311 (72%)

Query:     3 AIERSNCFHSKGDKNPCHM--NSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
             AI +SNC+H  G    C    N+N +M+ FG+ +I +SQIP+F  + WLS+VAA+MSFTY
Sbjct:   139 AIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTY 198

Query:    61 STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
             S IG+GL + K+ E  K  GS+ GI      E  K+W  FQALG+IAF+Y +SIIL+EIQ
Sbjct:   199 SFIGIGLALGKIIENRKIEGSIRGIPAENRGE--KVWIVFQALGNIAFSYPFSIILLEIQ 256

Query:   121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
             DT++SPP+E +TMKKAS ++V + T F+  CGCFGYAAFGD +PGNLLTGFGFY P+WL+
Sbjct:   257 DTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLV 316

Query:   181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITK--DIKVPIPGFKCYNLNL 238
             D ANA IV+HLVG YQV+ QP+FA  E+   +++P+++FI +    K+P+   +   LN 
Sbjct:   317 DFANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNP 376

Query:   239 FRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKW 298
              R+  RT++V++TT ++++ P+FN+V+G++GAL FWPL VYFPVEM I QKKI  W+  W
Sbjct:   377 MRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPW 436

Query:   299 LCLQILSVACL 309
             L L+  S  CL
Sbjct:   437 LLLRGFSFVCL 447

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 291 (107.5 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
 Identities = 69/194 (35%), Positives = 107/194 (55%)

Query:    26 YMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI 85
             +++ F  V  VLSQ+P+F+ +  +S+ AAVMS +YSTI  G  + K    GK        
Sbjct:   156 FIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGASVDK----GKVAD--VDY 209

Query:    86 SIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSE--SKTMKKASLISVGV 143
              +   + T K++  F ALGD+AFAY+   +++EIQ T+ S P +   K M K  +++  +
Sbjct:   210 HLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYII 269

Query:   144 TTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLF 203
               L Y      GY AFG+    N+L       P WL+ +AN  +VIH++G+YQ++  P+F
Sbjct:   270 VALCYFPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVF 327

Query:   204 AFIEKQAHQ--RFP 215
               IE    +  RFP
Sbjct:   328 DMIETVLVKKLRFP 341

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
 Identities = 60/184 (32%), Positives = 96/184 (52%)

Query:    26 YMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI 85
             +++ F  V  V+S +P+F+ +  +S+ AAVMS TYSTI     + K              
Sbjct:   156 WIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVHPDVDYSPRAST 215

Query:    86 SIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPS-ESKT-MKKASLISVGV 143
              +G      K++    ALGD+AFAY+   +++EIQ T+ S P   SK  M +  +++  V
Sbjct:   216 DVG------KVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIV 269

Query:   144 TTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLF 203
               + Y      GY  FG+    N+L       P WL+ +AN  +VIH++G+YQ+F  P+F
Sbjct:   270 VAICYFPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVF 327

Query:   204 AFIE 207
               +E
Sbjct:   328 DMLE 331

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39134	AAP3_ARATH	No assigned EC number	0.8308	1.0	0.7079	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	6e-75

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  236 bits (603), Expect = 6e-75
 Identities = 99/326 (30%), Positives = 155/326 (47%), Gaps = 31/326 (9%)

Query: 1   MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTY 60
           + AI  S           CH++   ++I FG++ I LS IP+   L  LS+VAAV S  Y
Sbjct: 111 LPAIFDSFFDT-------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-Y 162

Query: 61  STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 120
             I +         T +      G+         K+ R F A+G I FA+    +L+ IQ
Sbjct: 163 IVILVLSVAELGVLTAQ------GVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQ 216

Query: 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 180
           +T+KSP    K M K  L ++ + T+ Y+L G  GY AFG+   GN+L         WL+
Sbjct: 217 NTMKSPSKF-KAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLP--KSDWLI 273

Query: 181 DIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR 240
           DIAN  +V+HL+ +Y +   P+   +E    ++    +   K               L R
Sbjct: 274 DIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPK-------------SKLLR 320

Query: 241 LVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLC 300
           +V R+  V++T +I++ +PF  D + L+GA    PLT   P   ++  KK  K S + L 
Sbjct: 321 VVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLW 380

Query: 301 LQ-ILSVACLIITIAAAAGSIAGVVT 325
              IL V C++I +   A  +AG++ 
Sbjct: 381 KPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.97
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.66
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.17
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.61
PRK15132	403	tyrosine transporter TyrP; Provisional	98.37
PRK10483	414	tryptophan permease; Provisional	98.36
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.34
PRK09664	415	tryptophan permease TnaB; Provisional	98.23
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.99
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.93
TIGR00913	478	2A0310 amino acid permease (yeast).	97.88
PRK11021	410	putative transporter; Provisional	97.88
PRK10655	438	potE putrescine transporter; Provisional	97.87
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.86
PRK15049	499	L-asparagine permease; Provisional	97.85
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.84
PRK10644	445	arginine:agmatin antiporter; Provisional	97.84
PRK10746	461	putative transport protein YifK; Provisional	97.83
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.82
PRK10238	456	aromatic amino acid transporter; Provisional	97.81
PRK10249	458	phenylalanine transporter; Provisional	97.81
PRK11387	471	S-methylmethionine transporter; Provisional	97.78
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.74
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.73
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.68
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.68
PRK10580	457	proY putative proline-specific permease; Provision	97.66
TIGR00911	501	2A0308 L-type amino acid transporter.	97.66
PRK15238	496	inner membrane transporter YjeM; Provisional	97.64
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.55
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.55
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.54
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.52
TIGR00909	429	2A0306 amino acid transporter.	97.5
PRK10836	489	lysine transporter; Provisional	97.44
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.43
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	97.34
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.25
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.22
TIGR00930	953	2a30 K-Cl cotransporter.	97.21
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	95.87
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	94.11
KOG1289	550	consensus Amino acid transporters [Amino acid tran	93.96
TIGR00912	359	2A0309 spore germination protein (amino acid perme	93.55
KOG1286	554	consensus Amino acid transporters [Amino acid tran	92.98
COG0833	541	LysP Amino acid transporters [Amino acid transport	87.29
PF03845	320	Spore_permease: Spore germination protein; InterPr	81.39
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	81.31

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-42  Score=335.64  Aligned_cols=291  Identities=40%  Similarity=0.670  Sum_probs=248.2

Q ss_pred             ccccccCCCCCCCcCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCccccc
Q 019669            7 SNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGIS   86 (337)
Q Consensus         7 ~~~~~~~~~~~~c~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~   86 (337)
                      ..|++...|.+.++++.+.|+++++++++|++++||++.++|+|..+.++++.|+.+.+..++..+.+....+++..  +
T Consensus       146 L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~--~  223 (437)
T KOG1303|consen  146 LKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYL--D  223 (437)
T ss_pred             HHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcc--c
Confidence            34455554444337778899999999999999999999999999999999999999888888776654321111111  1


Q ss_pred             ccccCchhhHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcc
Q 019669           87 IGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGN  166 (337)
Q Consensus        87 ~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~  166 (337)
                      ++   ...   ..++++|++.|+|+||+++||||++||+|    ++|+|++..++.+++.+|+.+++.||++|||+++++
T Consensus       224 ~~---~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~  293 (437)
T KOG1303|consen  224 LG---TIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDN  293 (437)
T ss_pred             CC---CCc---chhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchh
Confidence            11   111   11899999999999999999999999999    789999999999999999999999999999999999


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHH
Q 019669          167 LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTI  246 (337)
Q Consensus       167 il~n~~~~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~  246 (337)
                      ++.|++  +|.|+.+.+|+++.+|++.+|+++++|+++.+|++....+++  +.+             +....|.++|+.
T Consensus       294 il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~~-------------~~~~~R~~~Rt~  356 (437)
T KOG1303|consen  294 ILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FKK-------------RSLVLRLLVRTF  356 (437)
T ss_pred             hhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--ccc-------------cccceeeehhhH
Confidence            999995  588899999999999999999999999999999988654321  100             123789999999


Q ss_pred             HHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 019669          247 FVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQIL-SVACLIITIAAAAGSIAGVVT  325 (337)
Q Consensus       247 ~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~i-~v~~ii~gv~gt~~si~~ii~  325 (337)
                      +++.++++|+.+|+|+++++++||+...++++++|+++|++++|.++++.+|+.++.+ .++++++|+...++++++++.
T Consensus       357 ~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  357 FVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             HHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999988888 799999999999999998875


Q ss_pred             h
Q 019669          326 D  326 (337)
Q Consensus       326 ~  326 (337)
                      +
T Consensus       437 ~  437 (437)
T KOG1303|consen  437 D  437 (437)
T ss_pred             C
Confidence            3

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-41  Score=322.61  Aligned_cols=269  Identities=18%  Similarity=0.238  Sum_probs=228.8

Q ss_pred             CcCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHH
Q 019669           19 CHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWR   98 (337)
Q Consensus        19 c~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (337)
                      =+++.+.|+++..+..++++++||+|+|+++|++|++..++...++    .++..++.+.   .++     .+...++.+
T Consensus       175 ~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii----~~y~~~~~~~---~~~-----~~~~~~~~~  242 (449)
T KOG1304|consen  175 GVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAII----MYYLVQDLPP---TSD-----LPAVTGWSG  242 (449)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHH----HHHHHhccCC---ccc-----cccccchhh
Confidence            4588999999999999999999999999999999999877543333    3334444331   111     111223457


Q ss_pred             HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhh---hHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCC
Q 019669           99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMK---KASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYN  175 (337)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~---~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~  175 (337)
                      .+..+|+.+|||+|++++.|+||+||+|    ++|.   ++++.++.+++++|+.+|++||++|||++++.|+.|+|+  
T Consensus       243 ~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~--  316 (449)
T KOG1304|consen  243 LPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ--  316 (449)
T ss_pred             hHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc--
Confidence            8899999999999999999999999999    9999   999999999999999999999999999999999999983  


Q ss_pred             ChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHH
Q 019669          176 PYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVIS  255 (337)
Q Consensus       176 ~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iA  255 (337)
                       +++.+.+++++++.+..+||++.+|..+.+|+.+.++..+     +            +.++....+|+.++++++.+|
T Consensus       317 -~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~-----~------------~~~~~~~~~R~~lVllt~~iA  378 (449)
T KOG1304|consen  317 -EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE-----N------------RKKLLEYALRVFLVLLTFLIA  378 (449)
T ss_pred             -cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc-----c------------hhHHHHHHHHHHHHHHHHHHH
Confidence             6788999999999999999999999999999987654321     0            012677899999999999999


Q ss_pred             HHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019669          256 MLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPK---WSTKWLCLQILSVACLIITIAAAAGSIAGV  323 (337)
Q Consensus       256 i~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~---~~~~~~~~~~i~v~~ii~gv~gt~~si~~i  323 (337)
                      .++|+++++++|+||++++.+++++|++++++.+.++.   +.++++.|.++.++|++..+.|||.|+.++
T Consensus       379 ~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  379 VAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            99999999999999999999999999999999976543   456777898899999999999999998764

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=7.6e-40  Score=322.68  Aligned_cols=281  Identities=19%  Similarity=0.215  Sum_probs=222.0

Q ss_pred             cCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHH
Q 019669           20 HMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRS   99 (337)
Q Consensus        20 ~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (337)
                      .++.+.|+++++++++|++++|++++++|+|++|..+++.+...+++.++..+   .+     ++.+.   +...+....
T Consensus       167 ~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~---~~-----~~~~~---~~~~~~~~~  235 (473)
T PLN03074        167 NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHG---QV-----EGVKH---SGPTKLVLY  235 (473)
T ss_pred             CcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC-----CCCCC---CCchhHHHH
Confidence            36789999999999999999999999999999998865543233232222221   11     11110   011244567


Q ss_pred             HHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCc--ccccccCCCCCh
Q 019669          100 FQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG--NLLTGFGFYNPY  177 (337)
Q Consensus       100 ~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~--~il~n~~~~~~~  177 (337)
                      +.++++++|||+||+++||||+|||||    +||++++..+...++.+|..+|+.||++|||++++  +.+.|+|.  +.
T Consensus       236 f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~--~~  309 (473)
T PLN03074        236 FTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR--SG  309 (473)
T ss_pred             HHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC--ch
Confidence            788899999999999999999999999    89999999999999999999999999999999764  45667862  22


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 019669          178 WLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISML  257 (337)
Q Consensus       178 ~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~  257 (337)
                       ....++++..++++.+|+++..|+.+.+|+.....  +    ++             ....|.++|+.++++++++|+.
T Consensus       310 -~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~----~k-------------~~~~r~~~R~~lv~~~~~iA~~  369 (473)
T PLN03074        310 -WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--D----TK-------------SICLRALARLPVVVPIWFLAII  369 (473)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--c----cc-------------cHHHHHHHHHHHHHHHHHHHHH
Confidence             36788999999999999999999999988875321  1    11             1267899999999999999999


Q ss_pred             ccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCC-------------Cchhh--HHHHHHHHHHHHHHH-HHHHHHHHH
Q 019669          258 LPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIP-------------KWSTK--WLCLQILSVACLIIT-IAAAAGSIA  321 (337)
Q Consensus       258 iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~-------------~~~~~--~~~~~~i~v~~ii~g-v~gt~~si~  321 (337)
                      +|+|+++++|+||++++.++|++|+++|+++++++             ...++  .+.|+.+.+++.++| +.|+++|++
T Consensus       370 IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~  449 (473)
T PLN03074        370 FPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMT  449 (473)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHH
Confidence            99999999999999999999999999999865332             11122  256777777666665 689999999


Q ss_pred             HHHHhccccccCccCC
Q 019669          322 GVVTDLKSYKPFSTSY  337 (337)
Q Consensus       322 ~ii~~~~~~~~f~~~~  337 (337)
                      ++++++++++.|++.|
T Consensus       450 ~ii~~~~~~~~f~~~~  465 (473)
T PLN03074        450 NFVRQIDTFGLFAKCY  465 (473)
T ss_pred             HHHHhhhhhhhhhhhc
Confidence            9999999988888764

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=2.7e-38  Score=312.27  Aligned_cols=274  Identities=15%  Similarity=0.186  Sum_probs=206.5

Q ss_pred             chhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCccccc---cc--ccCchhhHHHH
Q 019669           25 PYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGIS---IG--TVSETQKIWRS   99 (337)
Q Consensus        25 ~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~   99 (337)
                      .+.+++.++++||+++|++++|+|+|.+|+++.+.....+++.+...+   .+.+  .++.+   |+  .........++
T Consensus       184 ~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~---~~~~--~~~~~~~~~~~~~~~~f~~~~~~  258 (467)
T PTZ00206        184 LTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNG---LPEN--IKNVSVGKDDNAEIILFNSGNRA  258 (467)
T ss_pred             eeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhccc---Cccc--ccccccCCCCCCceEEecCchHH
Confidence            455667788999999999999999999998765543333333332221   1110  11111   00  00011112367


Q ss_pred             HHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCCChHH
Q 019669          100 FQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWL  179 (337)
Q Consensus       100 ~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~~~~~  179 (337)
                      +.++|+++|||+||.+.||+++|||||  +.+||.+++..++.+++++|..+|++||++||++++++++.|++.. .+..
T Consensus       259 ~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~-~~~~  335 (467)
T PTZ00206        259 IEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV-NEPA  335 (467)
T ss_pred             HhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC-CCch
Confidence            899999999999999999999999996  4589999999999999999999999999999999999999999422 1234


Q ss_pred             HHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHHcc
Q 019669          180 LDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP  259 (337)
Q Consensus       180 ~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~iP  259 (337)
                      ..+++++..+.+..+||++.+|+++.+++.+..  ++.    +   .  +       .+++...|..++++++++|+++|
T Consensus       336 ~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~--~~~----~---~--~-------~~~~~~~~~~l~~~~l~iAi~vP  397 (467)
T PTZ00206        336 IMVGFVGVLVKLFVSYALLGMACRNALYDVIGW--DAR----K---V--A-------FWKHCIAVVTLSVVMLLCGLFIP  397 (467)
T ss_pred             hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC--Ccc----c---C--c-------hhhHHHHHHHHHHHHHHHHhccC
Confidence            567778888889999999999999988887532  110    0   0  1       14555667777778899999999


Q ss_pred             chHHHHHHhhhhhhhhHHHhHHHHHHHHhcCC---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019669          260 FFNDVVGLLGALGFWPLTVYFPVEMYIAQKKI---PKWSTKWLCLQILSVACLIITIAAAAGSIAGVV  324 (337)
Q Consensus       260 ~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~---~~~~~~~~~~~~i~v~~ii~gv~gt~~si~~ii  324 (337)
                      +++++++++||++++.++|++|++||++....   +....+|+.++++.++|++.+++||++|+.+.+
T Consensus       398 ~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        398 KINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             CHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            99999999999999999999999999985322   222233456788888999999999999999876

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-37  Score=278.72  Aligned_cols=289  Identities=17%  Similarity=0.235  Sum_probs=239.3

Q ss_pred             cCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHH
Q 019669           20 HMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRS   99 (337)
Q Consensus        20 ~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (337)
                      .++.+-|+++.++.++|.++++++|-.+-+|+.+.++.++...+++.+|+....+     +     .|+.+...-+..+.
T Consensus       235 svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~d-----W-----~wskv~Fsidi~~f  304 (524)
T KOG4303|consen  235 SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSD-----W-----SWSKVTFSIDINTF  304 (524)
T ss_pred             CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----c-----cceeEEEEEEcccC
Confidence            3789999999999999999999999999999999999999888888888764322     2     22222223334467


Q ss_pred             HHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCCChHH
Q 019669          100 FQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWL  179 (337)
Q Consensus       100 ~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~~~~~  179 (337)
                      +.++|+++|+|+.|..+|+++.+|++|    .+|+-++.++.+..+++...+|.+||++|||++|+.|++|+|.+   ..
T Consensus       305 PisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q---sf  377 (524)
T KOG4303|consen  305 PISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ---SF  377 (524)
T ss_pred             ceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc---ch
Confidence            789999999999999999999999999    89999999999999999999999999999999999999999732   35


Q ss_pred             HHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHHcc
Q 019669          180 LDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP  259 (337)
Q Consensus       180 ~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~iP  259 (337)
                      ..++|+..++..+.|||+-..-..+.+|+-+.+-.|+..|. +-++   |. |+  .+.+.+-+|..+++.+.++|+.+|
T Consensus       378 k~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fp-scys---~D-g~--Lk~WgltlR~~lvvfTllmAi~vP  450 (524)
T KOG4303|consen  378 KILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFP-SCYS---PD-GS--LKEWGLTLRIILVVFTLLMAISVP  450 (524)
T ss_pred             hhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCc-eeeC---CC-cc--hhhheeeeeeHHHHHHHHHHHHhH
Confidence            67889999999999998765556666676555544554442 1222   11 21  124456799999999999999999


Q ss_pred             chHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 019669          260 FFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKP  332 (337)
Q Consensus       260 ~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~i~v~~ii~gv~gt~~si~~ii~~~~~~~~  332 (337)
                      +|..+|+++|+++++.++||.|++||++++++.....++..++.+.+.|.++++.|.|.|..++|+++++..+
T Consensus       451 hf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~  523 (524)
T KOG4303|consen  451 HFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS  523 (524)
T ss_pred             HHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence            9999999999999999999999999999987665555566788889999999999999999999999987554

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=6e-35  Score=283.61  Aligned_cols=281  Identities=26%  Similarity=0.336  Sum_probs=213.2

Q ss_pred             CcCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHH
Q 019669           19 CHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWR   98 (337)
Q Consensus        19 c~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (337)
                      ...++..|+++..++++||+++|+++++++.|.+|.++.+.++.+.+...... ....+.+.+.+     ......+..+
T Consensus       120 ~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~  193 (409)
T PF01490_consen  120 LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISY-GPGEPSGVPSP-----PVWPFISFSG  193 (409)
T ss_pred             ccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeee-ecccccccccc-----cccccchhhH
Confidence            45678899999999999999999999999999999886653211222111111 11111111111     1112335568


Q ss_pred             HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhh---hHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCC
Q 019669           99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMK---KASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYN  175 (337)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~---~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~  175 (337)
                      .+.++|+++|||++|.++||+++|||+|    ++|+   +++..++.+++++|..+|+.||++|||+++++++.|+|.  
T Consensus       194 ~~~~~~i~~faf~~~~~~~~i~~~m~~~----~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~--  267 (409)
T PF01490_consen  194 FFSAFGIIIFAFSCHPNLPPIQSEMKDP----SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPN--  267 (409)
T ss_pred             HHHhhhhhhhhhhcccccceeeeeccCC----ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCC--
Confidence            9999999999999999999999999998    5555   899999999999999999999999999999999999973  


Q ss_pred             ChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHH
Q 019669          176 PYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVIS  255 (337)
Q Consensus       176 ~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iA  255 (337)
                      +++...+++++..++++.+||+...|.++.+|+.+.+.....+. +.+  .  +    ...+++|...|+.+++.++++|
T Consensus       268 ~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~-~~~--~--~----~~~~~~~~~~~~~~~~~~~~iA  338 (409)
T PF01490_consen  268 DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRD-SPK--N--T----PSSRWLRYLIRIILVLLSFLIA  338 (409)
T ss_pred             cccccccccccchhhhhhccccccchhHhhhhhheecccccccc-ccc--c--c----cccceeeeeeecchhhhhhhhh
Confidence            23467788999999999999999999999999987542000000 000  0  0    0112678999999999999999


Q ss_pred             HHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCchhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 019669          256 MLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWL-----CLQILSVACLIITIAAAAGSI  320 (337)
Q Consensus       256 i~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~-----~~~~i~v~~ii~gv~gt~~si  320 (337)
                      +.+|+++++++++||++++.++|++|+++|+|.+++++++.+++     .++++.++|++..+.|++.++
T Consensus       339 ~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  339 IFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            99999999999999999999999999999999987665433332     244556667777777776654

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.97  E-value=5e-29  Score=240.37  Aligned_cols=272  Identities=19%  Similarity=0.273  Sum_probs=206.6

Q ss_pred             hhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHHHHHHHH
Q 019669           26 YMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGD  105 (337)
Q Consensus        26 ~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  105 (337)
                      |.++...+..||++.|+++++++.|.++.++.+..+.++++....... ..++....       ......+++.+.++++
T Consensus       131 ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~pi  202 (411)
T KOG1305|consen  131 ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPC-ALGRLSYL-------VPNLSSFSSLFYALPI  202 (411)
T ss_pred             eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCCcccc-------cCCcchhhhhhhhhhh
Confidence            678888899999999999999999999998776654444443322111 00111111       1112222578899999


Q ss_pred             HHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCCChH----HHH
Q 019669          106 IAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYW----LLD  181 (337)
Q Consensus       106 ~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~~~~----~~~  181 (337)
                      ++|||.||.+..++++|||||  |++++.++...+...+..+|..+|.+||++|||++.+|++.++|......    ...
T Consensus       203 ~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~  280 (411)
T KOG1305|consen  203 FVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLL  280 (411)
T ss_pred             hheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHH
Confidence            999999999999999999998  77899999999999999999999999999999999999999998432221    246


Q ss_pred             HHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHHHHHHHHccch
Q 019669          182 IANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFF  261 (337)
Q Consensus       182 ~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~~~iAi~iP~f  261 (337)
                      .++..+.++.+..+|+..+|++..++..+.+..|+.+   +      +      ...++.++...++..+.+.|+.+|++
T Consensus       281 ~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~---~------~------s~~r~~~itl~ll~~~~l~ai~~p~i  345 (411)
T KOG1305|consen  281 CVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT---S------F------SGKRHFVITLLLLIFTFLLAIFVPSI  345 (411)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC---C------c------cceehhHHHHHHHHHHHHHHHHhccH
Confidence            7888999999999999999999998776654333210   0      0      01456778888899999999999999


Q ss_pred             HHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019669          262 NDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVV  324 (337)
Q Consensus       262 ~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~i~v~~ii~gv~gt~~si~~ii  324 (337)
                      +++.+++||+++..++||+|+++|++.+|++.++  ....++..++++...++|++.-+.++.
T Consensus       346 ~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~  406 (411)
T KOG1305|consen  346 GTIFGFVGATSSTSISFILPALYYLKASKKKSRE--PLGALIFLILGVLLSIIGVAVMIYDLL  406 (411)
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHhhheeecccccc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987763322  333344555666666666555555544

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.66  E-value=1.2e-14  Score=141.88  Aligned_cols=240  Identities=16%  Similarity=0.167  Sum_probs=158.7

Q ss_pred             CCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHHH
Q 019669           21 MNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSF  100 (337)
Q Consensus        21 ~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (337)
                      .+++.+.+++..++.++++.++...++..|.+.....+..+.+.    .+......+..    ...+...+ ...+.+..
T Consensus       126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~----~~~~~~~~~~~----l~~~~~~~-~~~~~~~~  196 (415)
T COG0814         126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV----VYLIPHWNPAN----LFALPSAS-QSFWKYLL  196 (415)
T ss_pred             cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH----HHHhcccCHHH----Hhcccccc-hhhHHHHH
Confidence            67788889999999999999999999999999987655422222    22111111000    00000000 12344677


Q ss_pred             HHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccCCCCChHHH
Q 019669          101 QALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL  180 (337)
Q Consensus       101 ~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~~~~~~~~~  180 (337)
                      .++|+++|||++|+++|++++|||+++  .++.+|+...+..+..++|..++..+|..+|++++++++.+.++.  ....
T Consensus       197 ~~ipv~vfsF~~h~~i~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~--~~~l  272 (415)
T COG0814         197 LAIPVFVFSFGFHGNIPSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQN--ISLL  272 (415)
T ss_pred             HHhhHHHhhhhCCccchHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCch--HHHH
Confidence            999999999999999999999999973  233999999999999999999999999999999999999998632  2211


Q ss_pred             HHHHHHHHHHHHHhhhhhccchHHH--------------HHHHHhhcCCCCCcccCccccccCCCcccccchhH--HHHH
Q 019669          181 DIANAAIVIHLVGAYQVFCQPLFAF--------------IEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFR--LVWR  244 (337)
Q Consensus       181 ~~~~~~~~i~~~~s~~l~~~p~~~~--------------~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~--~~~r  244 (337)
                      . +..........+++.+.++.++.              .+....+  .+++          +  + ++.++.+  ....
T Consensus       273 ~-~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~~----------~--~-r~~~~~~~~~~~~  336 (415)
T COG0814         273 S-ALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNSK----------P--G-RKKTGLLTFLPPL  336 (415)
T ss_pred             H-HHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccCc----------c--c-chhhhhhhHHHHH
Confidence            1 11111122223344444443332              2222221  0100          0  0 0111222  2333


Q ss_pred             HHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhc
Q 019669          245 TIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQK  289 (337)
Q Consensus       245 ~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~  289 (337)
                      ...+......+...|..+.+++.+|+.....+.++.|...+.+..
T Consensus       337 i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~  381 (415)
T COG0814         337 IFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLP  381 (415)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            344566667899999999999999999999999999998876654

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.17  E-value=2.2e-09  Score=103.72  Aligned_cols=234  Identities=12%  Similarity=0.048  Sum_probs=141.4

Q ss_pred             CcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccccCchhhHHHHHHH
Q 019669           23 SNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQA  102 (337)
Q Consensus        23 ~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (337)
                      .+.+.+++.+++.++. .+..+..+.++.+.....+....+.++.++.+. +  +.  ...+..    .......+...+
T Consensus       114 ~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~-~--~~--~~~~~~----~~~~~~~~~~~a  183 (381)
T TIGR00837       114 ARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPHV-K--GD--LLLDVA----LDTSYWPYILSA  183 (381)
T ss_pred             HHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--HH--HHhcCc----cccccHHHHHHH
Confidence            3444444444444444 445678888877776655443222222222111 1  00  000000    001123367788


Q ss_pred             HHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCccccc----------ccC
Q 019669          103 LGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLT----------GFG  172 (337)
Q Consensus       103 ~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~----------n~~  172 (337)
                      ++...++|++|++++++.+|++||+   |+.+|++..+..+++++|+.+........+.+.-.....          ...
T Consensus       184 ~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~  260 (381)
T TIGR00837       184 LPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQ  260 (381)
T ss_pred             HHHHHHHHHcccccHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHH
Confidence            9999999999999999999998652   899999999999999999988766555554432111110          010


Q ss_pred             C-CCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHHHHHH
Q 019669          173 F-YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILT  251 (337)
Q Consensus       173 ~-~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~v~~~  251 (337)
                      . ....+...+......+.+..++.-.....+|..+..+++.  +    ++               .+|.....+..+..
T Consensus       261 ~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~----~~---------------~~~~~~~~~~~~~p  319 (381)
T TIGR00837       261 GVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D----SK---------------KGRFKTGLLTFLPP  319 (381)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c----cc---------------CCCchhhhhhHHhH
Confidence            0 0112233455556666677777655555556555544321  0    00               11233344556777


Q ss_pred             HHHHHHccchH-HHHHHhhhhhhhhHHHhHHHHHHHHhcCC
Q 019669          252 TVISMLLPFFN-DVVGLLGALGFWPLTVYFPVEMYIAQKKI  291 (337)
Q Consensus       252 ~~iAi~iP~f~-~vlsliGa~~~~~l~fi~P~l~~l~~~~~  291 (337)
                      .++|...|+-. ..++..| +.+..+.+++|++++++.||+
T Consensus       320 l~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       320 LVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             HHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            88899999877 8999999 889999999999999997754

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.61  E-value=7.7e-06  Score=79.59  Aligned_cols=172  Identities=18%  Similarity=0.262  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHH--HhHHhh---------hcCCCC
Q 019669           95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLC--GCFGYA---------AFGDLS  163 (337)
Q Consensus        95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~v--g~~gY~---------~fG~~~  163 (337)
                      ++...+.++++++++|+.|+++|++.+.+++.+   ||.+|++..+..+..++|+..  .++|=+         .-|++.
T Consensus       182 ~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~---~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~  258 (394)
T PF03222_consen  182 DWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP---KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV  258 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh
Confidence            344677999999999999999999999999532   899999999888888888765  233311         111111


Q ss_pred             Ccc--cccccCCCCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHH
Q 019669          164 PGN--LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRL  241 (337)
Q Consensus       164 ~~~--il~n~~~~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~  241 (337)
                      .+.  .+.+..  +..+....+.+...+.+..||-=...-++|.++..++.  ++     +.              ..|.
T Consensus       259 ~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~-----~~--------------~~r~  315 (394)
T PF03222_consen  259 SALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KN-----NS--------------SGRL  315 (394)
T ss_pred             HHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Cc-----cc--------------cchH
Confidence            111  111211  12233445566666777777732223345655555422  11     00              2233


Q ss_pred             HHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCC
Q 019669          242 VWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPK  293 (337)
Q Consensus       242 ~~r~~~v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~  293 (337)
                      ..-....+..+++|+..|+ |...+++.| ...+.+..++|+++..|.|+++.
T Consensus       316 ~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  316 KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            3334456667888999986 789999999 99999999999999999875443

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.37  E-value=6.6e-05  Score=73.12  Aligned_cols=169  Identities=12%  Similarity=0.149  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC-----Ccc-----cc
Q 019669           99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PGN-----LL  168 (337)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~-----~~~-----il  168 (337)
                      ...+++++.+||+.|.++|++.+.+++.+   +|-+|++..+..+..++|+.-=......-+.+.     +++     ++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            67899999999999999999999998642   899999999998888888866443333333221     111     12


Q ss_pred             cccCC-CCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHHH
Q 019669          169 TGFGF-YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIF  247 (337)
Q Consensus       169 ~n~~~-~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~~  247 (337)
                      ..+.. .+..+...++.....+.+..||-=...-.+|.++..+++.  +     +.              ..|...-...
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~-----~~--------------~~r~~~~~l~  318 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--N-----TV--------------GGRLQTGLIT  318 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--c-----cc--------------cCCchhehhh
Confidence            22110 0122334455566566667777323333455555544321  1     00              1234444566


Q ss_pred             HHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCC
Q 019669          248 VILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQKKIP  292 (337)
Q Consensus       248 v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~  292 (337)
                      .+..+++|+..|+ |...+++.|. ..+.+.+++|+++-.|.++.+
T Consensus       319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~  363 (403)
T PRK15132        319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN  363 (403)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence            7888899999997 7788888886 579999999999999987543

>PRK10483 tryptophan permease; Provisional

Probab=98.36  E-value=6e-05  Score=73.43  Aligned_cols=168  Identities=15%  Similarity=0.099  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHH--hHHhhh---------cCCCCCcc
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCG--CFGYAA---------FGDLSPGN  166 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg--~~gY~~---------fG~~~~~~  166 (337)
                      ....+++++.++|+.|+++|++++.+++..   ||.+|++..+..+..++|+.-=  +.|-..         -|++... 
T Consensus       193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d~---~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~-  268 (414)
T PRK10483        193 YLLMTLPFCLASFGYHGNVPSLMKYYGKDP---KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDV-  268 (414)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHH-
Confidence            466899999999999999999999998631   7999999999999999988742  222111         1222211 


Q ss_pred             cccccCC-CCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHH
Q 019669          167 LLTGFGF-YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRT  245 (337)
Q Consensus       167 il~n~~~-~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~  245 (337)
                      .+..+.. .+..+......+...+.+..||-=...-.+|.++..++.  +++    .               ..|...-.
T Consensus       269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~----~---------------~~r~~~~~  327 (414)
T PRK10483        269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF--DDS----A---------------MGRFKTAL  327 (414)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc----c---------------ccceeeeh
Confidence            1111110 011222334555666667777733333455666655532  110    0               11222233


Q ss_pred             HHHHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhcCC
Q 019669          246 IFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQKKI  291 (337)
Q Consensus       246 ~~v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~  291 (337)
                      +..+-..++|...|+ |=..++..|.. ...+.-++|+++-++.||+
T Consensus       328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            557788899999997 88899999977 6677789999999998764

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.34  E-value=0.00013  Score=72.70  Aligned_cols=54  Identities=20%  Similarity=0.073  Sum_probs=44.5

Q ss_pred             HHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 019669          105 DIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD  161 (337)
Q Consensus       105 ~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~  161 (337)
                      .+.|+|.|-......-+|+|||+   |+.+|++..+...+.++|....+.-...-++
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~  255 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIPR  255 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence            46789999999999999999995   8999999999999999998766544333333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.23  E-value=0.00024  Score=69.19  Aligned_cols=169  Identities=12%  Similarity=0.069  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHH--HhHHh---------hhcCCCCCcc
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLC--GCFGY---------AAFGDLSPGN  166 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~v--g~~gY---------~~fG~~~~~~  166 (337)
                      ....+++++.++|+.|+++|++.+.+++..   ++-+|++..+..+..++|.+.  .+.|-         ..-|+++.+.
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~---~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l  270 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKRK---DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL  270 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCccH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence            466799999999999999999999998641   688888888877777787544  22221         1122222221


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHHHHH
Q 019669          167 LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTI  246 (337)
Q Consensus       167 il~n~~~~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~r~~  246 (337)
                      +..-....+..+...+..+...+.+..||-=...-.+|.++..++.  ++++                   ..|...-..
T Consensus       271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~~-------------------~~r~~~~~l  329 (415)
T PRK09664        271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DNSH-------------------GGRFKTVLL  329 (415)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCcc-------------------ccceeeehh
Confidence            1111000112233445556666677777732333355666555432  1110                   112223335


Q ss_pred             HHHHHHHHHHHccc-hHHHHHHhhhhhhhhHHHhHHHHHHHHhcCC
Q 019669          247 FVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYIAQKKI  291 (337)
Q Consensus       247 ~v~~~~~iAi~iP~-f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~  291 (337)
                      ..+-..++|...|+ |=..++.-|.. .+.+.-++|+++-+|.||+
T Consensus       330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            57788899999998 88899999996 6688889999999998764

>TIGR00814 stp serine transporter

Probab=97.99  E-value=0.00021  Score=69.55  Aligned_cols=178  Identities=9%  Similarity=0.066  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhh----hhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC-----Cccc
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQ----DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PGNL  167 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~----~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~-----~~~i  167 (337)
                      .+...++++..+||.+|..+++..    +|.+||+...+|-+|++..+..+..++|+..-...-...+.+.     ++++
T Consensus       186 ~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ni  265 (397)
T TIGR00814       186 KTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNI  265 (397)
T ss_pred             HHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Confidence            467899999999999999999997    3344331112677888888888888888776555444444442     1121


Q ss_pred             --ccccCC--CCChHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHHHH
Q 019669          168 --LTGFGF--YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVW  243 (337)
Q Consensus       168 --l~n~~~--~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~~~  243 (337)
                        +..+.+  +.+ ....+......+.+..||.=...-.++.++..+.+..+. +  ++  +.        +.+..+...
T Consensus       266 s~Ls~l~~~~~~~-~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~-~--~~--~~--------~~~~~~~~~  331 (397)
T TIGR00814       266 SILSYLANHFNAA-WISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM-K--GK--KI--------NIRKLNRAI  331 (397)
T ss_pred             HHHHHHHhhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-c--cc--cc--------CHHHHHHHH
Confidence              110000  112 222233344445556666433344667777766321111 0  00  00        011334455


Q ss_pred             HHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHh
Q 019669          244 RTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQ  288 (337)
Q Consensus       244 r~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~  288 (337)
                      -..+.+.++.+|+.=|+.=++++-+|+-....+.|++|...-.|.
T Consensus       332 ~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v  376 (397)
T TIGR00814       332 AIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV  376 (397)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence            557778888999999999888887788888888899999876654

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.93  E-value=0.0033  Score=62.55  Aligned_cols=59  Identities=10%  Similarity=0.086  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG  160 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG  160 (337)
                      +...++....|+|.|-.....+-+|+||+    |+.+|++..+...+.++|..+.+..+...+
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            45578888999999988888888999986    899999999999999999998876654443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.88  E-value=0.006  Score=60.80  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHh
Q 019669           96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGC  153 (337)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~  153 (337)
                      +.+...++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|.....
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667888899999999999999999999995   89999999999999999998754

>PRK11021 putative transporter; Provisional

Probab=97.88  E-value=0.0053  Score=59.96  Aligned_cols=57  Identities=19%  Similarity=0.339  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019669           95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF  154 (337)
Q Consensus        95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~  154 (337)
                      ++.+...++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|......
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            344677889999999999999999999999995   899999999999999999988654

>PRK10655 potE putrescine transporter; Provisional

Probab=97.87  E-value=0.005  Score=60.63  Aligned_cols=56  Identities=13%  Similarity=0.043  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY  156 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY  156 (337)
                      +...++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|+.......
T Consensus       190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        190 AVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889999999999999999999995   79999999999999999998765443

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.86  E-value=0.0029  Score=63.75  Aligned_cols=51  Identities=10%  Similarity=0.047  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHH
Q 019669           99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCG  152 (337)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg  152 (337)
                      ....+..+.|+|.|--.....-+|||||+   |+++|++..+..++.++|....
T Consensus       196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       196 TLVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence            33445556899999999999999999995   7999999999988888887644

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK15049 L-asparagine permease; Provisional

Probab=97.85  E-value=0.0029  Score=63.54  Aligned_cols=59  Identities=15%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA  158 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~  158 (337)
                      ...+.++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|+.........
T Consensus       220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~  278 (499)
T PRK15049        220 LPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVML  278 (499)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            3455667789999999999999999999995   7899999998888888888776544433

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.84  E-value=0.0043  Score=61.18  Aligned_cols=60  Identities=13%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhh
Q 019669           95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA  157 (337)
Q Consensus        95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~  157 (337)
                      +..+...++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|....+....
T Consensus       185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~~  244 (435)
T PRK10435        185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVISG  244 (435)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345777889999999999999999999999995   799999999999999999988765543

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.84  E-value=0.0046  Score=61.10  Aligned_cols=55  Identities=15%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG  155 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g  155 (337)
                      ....++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|..+.+.-
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~~  246 (445)
T PRK10644        192 AIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTAI  246 (445)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            455678889999999999999999999995   7999999999999999999887653

>PRK10746 putative transport protein YifK; Provisional

Probab=97.83  E-value=0.0053  Score=61.08  Aligned_cols=57  Identities=16%  Similarity=0.030  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019669           96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG  155 (337)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g  155 (337)
                      +.+...++....|+|.|--.....-+|+|||+   |+.+|++..+.....++|.......
T Consensus       199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~  255 (461)
T PRK10746        199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIFVI  255 (461)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566889999999999999999999999995   8999999988888888888764443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.82  E-value=0.0067  Score=60.05  Aligned_cols=56  Identities=14%  Similarity=0.151  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019669           96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF  154 (337)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~  154 (337)
                      +.+...++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|....+.
T Consensus       180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677899999999999999999999999995   789999999998889999886554

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.81  E-value=0.0041  Score=61.74  Aligned_cols=51  Identities=14%  Similarity=0.164  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHH
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLC  151 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~v  151 (337)
                      +...+++...|+|.|--.....-+|+|||+   |+.+|++..+.....+.|...
T Consensus       201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        201 GLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence            555778889999999999999999999995   789999988887777777654

>PRK10249 phenylalanine transporter; Provisional

Probab=97.81  E-value=0.0074  Score=59.94  Aligned_cols=56  Identities=20%  Similarity=0.122  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG  155 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g  155 (337)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..+.....++|......-
T Consensus       209 ~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~  264 (458)
T PRK10249        209 NGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVL  264 (458)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999995   7899999999988999998754443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.78  E-value=0.006  Score=60.75  Aligned_cols=56  Identities=13%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG  155 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g  155 (337)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..+...+..+|+......
T Consensus       206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        206 LPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566778889999999999999999999995   7899999999988899998886543

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.74  E-value=0.0093  Score=58.28  Aligned_cols=59  Identities=22%  Similarity=0.271  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019669           99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL  162 (337)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~  162 (337)
                      .+.+++...|+|.|-......-+|+||     |+.+|++..+..++.++|......-....+++
T Consensus       190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~  248 (426)
T PF13520_consen  190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD  248 (426)
T ss_dssp             HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred             hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence            568889999999999999999999886     79999999999999999999877665555554

...

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.73  E-value=0.0089  Score=58.67  Aligned_cols=177  Identities=11%  Similarity=0.092  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCC-C----cc--chhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC-----Cc
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSP-P----SE--SKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PG  165 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P-~----~s--~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~-----~~  165 (337)
                      ....++++++|+|+-|+.+|++...+|+. +    ++  .+|-+|++..+..+..++|++.-...-..-+++.     ++
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            46689999999999999999999884321 0    01  3788888888888888888776554444433331     12


Q ss_pred             ccc--c---c-cCCC-CC-----hHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHhh-c-CCCCCcccCccccccCCC
Q 019669          166 NLL--T---G-FGFY-NP-----YWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQ-R-FPDSEFITKDIKVPIPGF  231 (337)
Q Consensus       166 ~il--~---n-~~~~-~~-----~~~~~~~~~~~~i~~~~s~~l~~~p~~~~~e~~~~~-~-~~~s~~~~~~~~~~~p~~  231 (337)
                      |+.  .   | ++.. +.     .+...++.+...+.+..||.=...-.+|.++.+..+ . .++.+      +.     
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~------~~-----  358 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT------KV-----  358 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cc-----
Confidence            221  1   1 2100 00     122333444445566666632223456777766632 1 11111      01     


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHh
Q 019669          232 KCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQ  288 (337)
Q Consensus       232 g~~~~~~~~~~~r~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~  288 (337)
                         +.+..+......+.+.++.+|+.=|++=++++-+|+-....+.|++|...-.|.
T Consensus       359 ---~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kv  412 (443)
T PRK13629        359 ---SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKA  412 (443)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHcc
Confidence               111344556667788889999999999999998888888888999999876654

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.68  E-value=0.0087  Score=59.10  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG  155 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g  155 (337)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|.......
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        195 MALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4566888899999999999999999999995   7999999999999999998876543

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.68  E-value=0.01  Score=58.70  Aligned_cols=57  Identities=14%  Similarity=0.087  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY  156 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY  156 (337)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..+......+|+.......
T Consensus       201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            3577889999999999999999999999995   79999998888888888887655433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.66  E-value=0.02  Score=56.81  Aligned_cols=55  Identities=20%  Similarity=0.132  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF  154 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~  154 (337)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..+.....++|......
T Consensus       199 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        199 LGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566788999999999999999999999994   789999888877777888776543

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.66  E-value=0.0068  Score=60.86  Aligned_cols=58  Identities=24%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019669           96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY  156 (337)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY  156 (337)
                      ..+...++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|....+.-.
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666788999999999999999999999995   78999999999999999999865443

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.64  E-value=0.019  Score=57.66  Aligned_cols=54  Identities=20%  Similarity=0.189  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF  154 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~  154 (337)
                      +...++....|+|.|-......-+|+|||+   |+.+|++..+...+..+|....+.
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            455667778999999999999999999995   799999999999999999876443

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.55  E-value=0.024  Score=56.61  Aligned_cols=60  Identities=10%  Similarity=0.061  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG  160 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG  160 (337)
                      ....++....|+|.|-......-+|+|||+   |+.+|++..+..+..+++....+.-+...|
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            445566667899999999999999999995   899999999887766655444433333444

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.55  E-value=0.02  Score=57.03  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY  156 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY  156 (337)
                      .+.+.++....|+|.|-......-+|+|||+   |+.+|++..+.....++|......-+
T Consensus       211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            3577889999999999999999999999995   78999998777777778876665444

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.54  E-value=0.022  Score=56.72  Aligned_cols=56  Identities=9%  Similarity=0.032  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY  156 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY  156 (337)
                      .....++....|+|.|-......-+|+|| +   |+.+|++..+..++.++|........
T Consensus       199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667888899999999999999999999 4   99999999999999999998876543

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00908 2A0305 ethanolamine permease

Probab=97.52  E-value=0.012  Score=57.90  Aligned_cols=54  Identities=7%  Similarity=-0.031  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHh
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGC  153 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~  153 (337)
                      .+.+.++....|+|.|.......-+|+|||+   |+.+|++..+..++..+|...-.
T Consensus       191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       191 VGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence            4667888889999999999999999999995   78999999999888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00909 2A0306 amino acid transporter

Probab=97.50  E-value=0.024  Score=55.54  Aligned_cols=57  Identities=25%  Similarity=0.247  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHh
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY  156 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY  156 (337)
                      .+...++....|+|.|-.......+|+|||+   |+.+|++..+..++.++|........
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       195 GGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567888899999999999999999999994   78999999999999999998875444

>PRK10836 lysine transporter; Provisional

Probab=97.44  E-value=0.06  Score=53.92  Aligned_cols=58  Identities=12%  Similarity=0.081  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhh
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA  158 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~  158 (337)
                      ..+.+.....|+|.|-......-+|+|||+   |+.+|++..+...+.++|......-...
T Consensus       206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~  263 (489)
T PRK10836        206 AMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLI  263 (489)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            444555667799999999999999999995   8999999999999999999886544333

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.43  E-value=0.015  Score=59.28  Aligned_cols=112  Identities=13%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccc-cccccCchhhHHHHHHHHHHHHHHhcCcce
Q 019669           37 LSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI-SIGTVSETQKIWRSFQALGDIAFAYSYSII  115 (337)
Q Consensus        37 Ls~~r~l~~ls~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~faf~~~~~  115 (337)
                      +...+..|..+++..+..+..+....+.++.+....   .+.+...... ..++..+ ..+.+.+.+.....|+|.|--.
T Consensus       174 ~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~---~~~~~~~~~~~~~~~f~p-~g~~g~l~g~~~~~faf~Gfd~  249 (557)
T TIGR00906       174 VLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKA---DVANWSITEEKGAGGFMP-YGFTGVLSGAATCFFAFIGFDA  249 (557)
T ss_pred             HHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC---CchhccccccccCCCCCC-cchHHHHHHHHHHHHHHhhHHH
Confidence            334567778887777766544433233333332221   1111110000 0000111 1234677889999999999999


Q ss_pred             ehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHH
Q 019669          116 LIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG  155 (337)
Q Consensus       116 ~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~g  155 (337)
                      ....-+|+|||+   |+.+|++..+..+++++|..+.+.-
T Consensus       250 v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l  286 (557)
T TIGR00906       250 IATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAAL  286 (557)
T ss_pred             HHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999995   7899999999999999999887543

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=97.34  E-value=0.17  Score=50.43  Aligned_cols=61  Identities=15%  Similarity=-0.050  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD  161 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~  161 (337)
                      ....+.....|+|.|-......-+|+|||+   |+.+|++..+..+..++|..+-+......++
T Consensus       214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~  274 (475)
T TIGR03428       214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILGALMAAPS  274 (475)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            344566667899999999999999999995   8999999999988877666555444433343

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.25  E-value=0.05  Score=53.56  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 019669           98 RSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD  161 (337)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~  161 (337)
                      ....++....++|.|-......-+|+|||+   |+.+|++..+...+.++|......-....++
T Consensus       202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            577888999999999999999999999984   7899999999999999999998877766665

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.22  E-value=0.029  Score=55.38  Aligned_cols=245  Identities=15%  Similarity=0.168  Sum_probs=127.7

Q ss_pred             CcCCCcchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHH---HHHHHHHHhhHhhhhcCCCCCC---cccccccccCc
Q 019669           19 CHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFT---YSTIGLGLGIAKVAETGKFRGS---LTGISIGTVSE   92 (337)
Q Consensus        19 c~~~~~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~~---~~~i~v~~~i~~~~~~~~~~~~---~~~~~~~~~~~   92 (337)
                      |..+...-..+..+++..+. ..|...++|.+.+-.+.++.   ...++++.+++....+...+..   .++.+      
T Consensus       128 c~~p~~~~~lla~~~l~~lt-~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~------  200 (479)
T KOG1287|consen  128 CDVPRVASKLLAAALLVLLT-LINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSD------  200 (479)
T ss_pred             CCCchHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCc------
Confidence            66665555555554444444 45666677777666554433   2222233333322222111111   12211      


Q ss_pred             hhhHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccccC
Q 019669           93 TQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFG  172 (337)
Q Consensus        93 ~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n~~  172 (337)
                       .+.-+...++=.-.|||.|=..+-.+-+|+|||.   |++++++..++.+++++|+.+=+..+.+-   +.+.++.+-.
T Consensus       201 -~~~g~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~a  273 (479)
T KOG1287|consen  201 -TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSSDA  273 (479)
T ss_pred             -CchHHHHHHHHHhhhcccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcccch
Confidence             1223566778888999999999999999999995   89999999999999999999866544321   2222222110


Q ss_pred             C-----C--CChHHHHHHHHHHHHHHHHhhhhhc----cchHHHHHHHHhhcCCCCCcccCccccccCCCcccccchhHH
Q 019669          173 F-----Y--NPYWLLDIANAAIVIHLVGAYQVFC----QPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRL  241 (337)
Q Consensus       173 ~-----~--~~~~~~~~~~~~~~i~~~~s~~l~~----~p~~~~~e~~~~~~~~~s~~~~~~~~~~~p~~g~~~~~~~~~  241 (337)
                      .     +  -+.+ .-..-++..+..+++..-.+    +..+...++   ...|+.-  ..- +.       ++. -.+.
T Consensus       274 Vav~Fa~~~~G~~-~~~ip~~ValS~~G~~n~~ifs~SR~~~~~are---G~LP~~~--s~i-~~-------~~~-TP~~  338 (479)
T KOG1287|consen  274 VAVTFADRILGVF-AWAIPFSVALSLIGSLNSVIFSSSRLFYAGARE---GHLPAFF--SMI-SV-------RRF-TPRP  338 (479)
T ss_pred             HHHHHHHHhccch-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHc---cCccHHH--Hhh-cC-------CCC-CChH
Confidence            0     0  0111 01112222333333332111    111111111   0112110  000 00       000 1111


Q ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHhHHHHHHHHhcCCCCc
Q 019669          242 VWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKW  294 (337)
Q Consensus       242 ~~r~~~v~~~~~iAi~iP~f~~vlsliGa~~~~~l~fi~P~l~~l~~~~~~~~  294 (337)
                        ......+..++...+.+++.+++.++=.......+.+=+++|+|.++++..
T Consensus       339 --allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~  389 (479)
T KOG1287|consen  339 --ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLP  389 (479)
T ss_pred             --HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence              112233334445566689999999988888888888899999998876543

>TIGR00930 2a30 K-Cl cotransporter

Probab=97.21  E-value=0.051  Score=58.76  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhH
Q 019669           99 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCF  154 (337)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~  154 (337)
                      ++..++++.+||.|-.....+-+|+|||+   ++.+|++..+..+++++|+.+.+.
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45677878889999888899999999995   899999999999999999999753

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=95.87  E-value=0.41  Score=47.02  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHH-----HHHHHHhHHhhhcCCCCCccc
Q 019669           95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTL-----FYMLCGCFGYAAFGDLSPGNL  167 (337)
Q Consensus        95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~-----iY~~vg~~gY~~fG~~~~~~i  167 (337)
                      .+.+.+.++-..+|||+|.-.+=.--+|-|||+   |..+|+.+.-..=..+     +.+++.+.-|-.++++.++.+
T Consensus       201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV  275 (462)
T COG1113         201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV  275 (462)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence            445778999999999999888888889999995   6777876654433333     344556666777777665543

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=94.11  E-value=0.12  Score=51.52  Aligned_cols=64  Identities=27%  Similarity=0.201  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019669           96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL  162 (337)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~  162 (337)
                      +.+.+.++....++|.|-......-+|.|||+   |+.+|++..+.....++|.......=...|.+
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~  262 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYD  262 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            45788999999999999999999999999995   89999999999999999998776554555544

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=93.96  E-value=6.7  Score=39.55  Aligned_cols=72  Identities=11%  Similarity=0.003  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCCCcccccc
Q 019669           96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTG  170 (337)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~~~~il~n  170 (337)
                      .|....++-.-.....|--.-..+-+|-||++   ++-+|.+..+..+..++=..+-+.-..+-++|....+..+
T Consensus       251 G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~  322 (550)
T KOG1289|consen  251 GWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS  322 (550)
T ss_pred             hHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence            34555666666666777777789999999985   7888888888877777666655555556675544333333

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=93.55  E-value=4.6  Score=38.47  Aligned_cols=56  Identities=20%  Similarity=0.318  Sum_probs=48.4

Q ss_pred             HHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCCC
Q 019669          104 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS  163 (337)
Q Consensus       104 g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~~  163 (337)
                      ....++|.+.....-...++|||    |+.+|+...+...+..+|...-+..-..+|.+.
T Consensus       186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            36788998888888888999998    899999999999999999988888888888663

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=92.98  E-value=2.6  Score=42.93  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHh
Q 019669           96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGC  153 (337)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~  153 (337)
                      +.++..++-+..|+|.|--.+-.--+|-|||+   |.-+++...++..++.+|....+
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~  285 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSI  285 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999995   89999999999999999998876

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=87.29  E-value=36  Score=34.50  Aligned_cols=124  Identities=17%  Similarity=0.154  Sum_probs=76.6

Q ss_pred             CCCcchhHHHHHHHHHhh--cCCCCchhh-HHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCCCCcccccccc-cCchhhH
Q 019669           21 MNSNPYMIAFGIVEIVLS--QIPDFDQLW-WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGT-VSETQKI   96 (337)
Q Consensus        21 ~~~~~~~ii~~~~~~pLs--~~r~l~~ls-~~S~ia~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~   96 (337)
                      ++...|..++.++++.+.  -.|-+.+.- |+|.+=++.++.+  ++++..+..|..  |.+...-.--|.. -.....+
T Consensus       158 v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~F--ii~gii~~~Gg~--~~~~~ig~~yw~~pg~F~~gf  233 (541)
T COG0833         158 VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGF--IILGIIIICGGG--PTHGYIGFNYWHDPGAFAGGF  233 (541)
T ss_pred             CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHH--HHHHHHHhcCCC--CCCCCcceeeecCCCCCCcch
Confidence            567789999888777766  456666665 4555555554442  333333333321  2122221112221 1122245


Q ss_pred             HHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHH
Q 019669           97 WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLC  151 (337)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~v  151 (337)
                      .++...+-+..|+|+|.-.+----.|=+||+   |..+|+.....-=..++|...
T Consensus       234 ~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~s  285 (541)
T COG0833         234 KGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILS  285 (541)
T ss_pred             HHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHH
Confidence            5677888889999999988888889999995   889998887776666666544

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=81.39  E-value=10  Score=35.49  Aligned_cols=64  Identities=25%  Similarity=0.280  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019669           95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL  162 (337)
Q Consensus        95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~  162 (337)
                      +..+.+.+.-...+.|++-..+.-+...+|+|    ++..|....+...+..+|...-+..-..||.+
T Consensus       173 g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~  236 (320)
T PF03845_consen  173 GIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE  236 (320)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            34466667777788888887888888999998    88999999999999988888888788888865

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=81.31  E-value=55  Score=31.78  Aligned_cols=50  Identities=22%  Similarity=0.305  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhcCcceehhhhh-hcCCCCccchhhhhHHHHHHHH---HHHHHHHHHhHHh
Q 019669          101 QALGDIAFAYSYSIILIEIQD-TVKSPPSESKTMKKASLISVGV---TTLFYMLCGCFGY  156 (337)
Q Consensus       101 ~~~g~~~faf~~~~~~~~i~~-~M~~P~~s~~~f~~~l~~s~~~---~~~iY~~vg~~gY  156 (337)
                      -+++-..|+.   ..+-.+.+ |+|||+   |+.++....+.+.   ...+|...+.+|-
T Consensus       188 D~laal~fg~---iiv~~i~~~g~~~~~---~~~~~~i~~G~ia~i~l~~vY~~L~~lGa  241 (378)
T TIGR00796       188 DALAALVFGI---IVVNAIRSRGVTKPK---KITKYTIKAGLIAAVLLAFIYLSLFYLGA  241 (378)
T ss_pred             HHHHHHHHHH---HHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444443   45556666 999983   5666676666633   3344555544443

transmembrane helical spanners.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.35
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.27
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.87
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	83.46

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.35  E-value=3e-05  Score=74.54  Aligned_cols=64  Identities=13%  Similarity=0.074  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019669           96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL  162 (337)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~  162 (337)
                      ..+...++....|+|.|........+|+|||+   |+.+|++..+...+.++|...........+.+
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            34677889999999999999999999999984   78999999999999999999988776666654

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.27  E-value=0.00011  Score=72.07  Aligned_cols=60  Identities=8%  Similarity=-0.016  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019669          100 FQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL  162 (337)
Q Consensus       100 ~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~  162 (337)
                      ..++....|+|.|.......-+|+|||+   |+.+|++..+...+.++|....+.-....+++
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            3457778999999999999999999995   78999999999999999999988777666655

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.87  E-value=0.00094  Score=64.00  Aligned_cols=63  Identities=13%  Similarity=0.166  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 019669           95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG  160 (337)
Q Consensus        95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG  160 (337)
                      ++.+.+.++....|+|.|........+|+|||+   |+.+|++..+...+.++|....+......+
T Consensus       186 g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          186 AVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            334677888888999999999999999999993   679999999999999999988776555444

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=83.46  E-value=33  Score=33.02  Aligned_cols=34  Identities=15%  Similarity=0.510  Sum_probs=22.0

Q ss_pred             cchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 019669           24 NPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSF   58 (337)
Q Consensus        24 ~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~   58 (337)
                      ..+.+++.++.+++. ..-++.+.++..++....+
T Consensus       143 ~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p~~~  176 (501)
T 2jln_A          143 PLWIVIFGAIQVVTT-FYGITFIRWMNVFASPVLL  176 (501)
T ss_dssp             HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHH
Confidence            455666777777777 4457777777777654433

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00