Citrus Sinensis ID: 019670

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MSADANKSTTNGYEKPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKYAERMREDDKKMPSFWAMETTPSEASQPSLTMATSSDSPNLNSDSDTSDHEKNDTSSQRGMETEAVSSDEKGLTIDGSKNIVGEVH
cccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccEEEcccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccHHHHHHHHHHHHHcHHHHHccEEEEccccccHHHHHHcccccccccccEEEEEccccccHHHHHHccccccccHHHcccccccccccccHHHHHHcccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHcccccHHHHHHHcEEcccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHHHHHccccHHcEEEEEccccHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHccHHHcHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
msadanksttngyekplpseeQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAeykpeeirwDEIANEAETGKIYRLNYVDKYGRAVLvmrpscqntkstkgQIRYLVYCMENailnlpphqEQMVWLIDfqgfnlshisVKVTRETAHVLqdhyperlglailynppkffepfwTVVKPflelktqnkvkfvysddintrRIMEDLFDMdqlesafggndrvgfNINKYAERMReddkkmpsfwamettpseasqpsltmatssdspnlnsdsdtsdhekndtssqrgmeteavssdekgltidgsknivgevh
msadanksttngyekplpseeqqRKINEVRRLLGLLSGRLSIYCSDASIARHlraqnwnvkkaTKMLKETLKWraeykpeeirwdeianeaetgkiyrlNYVDKYGRAVLVmrpscqntkstkGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPflelktqnkvkfvysddinTRRIMEDLFDMDQLEsafggndrvgfNINKYAERMREDDKKMPSFWAMEttpseasqpsltMATSsdspnlnsdsdtsdhekndtssqrgmeteavssdekgltidgsknivgevh
MSADANKSTTNGYEKPLPSEEQQRKINEVrrllgllsgrlsIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKYAERMREDDKKMPSFWAMETTPSEASQPSLTMAtssdspnlnsdsdtsdHEKNDTSSQRGMETEAVSSDEKGLTIDGSKNIVGEVH
***************************EVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKY*************************************************************************************
************************KINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKYAERMREDDKKMPS************************************************************************
********************EQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKYAERMREDDKKMPSFWAM*****************************************************GLTIDGSKNIVGEVH
***************PLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKYAERMREDDKKMPSFWAME*******************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSADANKSTTNGYEKPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKYAERMREDDKKMPSFWAMETTPSEASQPSLTMATSSDSPNLNSDSDTSDHEKNDTSSQRGMETEAVSSDEKGLTIDGSKNIVGEVH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q55CU8364 Random slug protein 5 OS= yes no 0.759 0.703 0.283 5e-32
Q9UU991008 CRAL-TRIO domain-containi yes no 0.596 0.199 0.374 6e-29
P53860351 Phosphatidylinositol tran yes no 0.596 0.572 0.300 5e-22
P53844350 Phosphatidylinositol tran no no 0.528 0.508 0.343 1e-19
Q757H2436 Phosphatidylinositol tran no no 0.709 0.548 0.253 1e-15
Q10138444 CRAL-TRIO domain-containi no no 0.563 0.427 0.280 2e-14
Q7PWB1 684 Protein real-time OS=Anop yes no 0.554 0.273 0.268 3e-13
Q9VMD6 659 Protein real-time OS=Dros yes no 0.649 0.332 0.242 2e-12
Q0V9N0 707 SEC14-like protein 5 OS=X no no 0.572 0.272 0.254 4e-12
Q92503 715 SEC14-like protein 1 OS=H yes no 0.569 0.268 0.253 8e-12
>sp|Q55CU8|RSC5_DICDI Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1 Back     alignment and function desciption
 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 141/279 (50%), Gaps = 23/279 (8%)

Query: 19  SEEQQRKINEVRRLLGLLSGRLSI-YCSDASIARHLRAQNWNVKKATKMLKETLKWRAEY 77
           +E+Q     E++     L+    I +C+D    R+LRA+N+ V K+ KML++TL+WR ++
Sbjct: 45  NEKQLEAFKEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKF 104

Query: 78  KPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRY--LVYCMEN 135
           +P++I+      E  +     +N  DK GR ++   P     K+   ++++  LVY +E 
Sbjct: 105 RPQDIQLGGDIREIGSAGCVYVNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQ 164

Query: 136 AI--LNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFF 193
               ++ P   EQ  +++D++ F   ++ +K   E  H L DH PER+G ++  +PP  F
Sbjct: 165 GFSRMDEPKGIEQFCFIVDYKDFGSGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALF 224

Query: 194 EPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLF---DMDQLESAFGGNDRVGFNIN 250
              W ++ PFL   T +KV+F+ S  ++ +R   +L    D++ LE   GGN    +NI+
Sbjct: 225 WFAWKIISPFLNEVTLSKVRFINSKKVDGKRTFAELLEYVDIENLEQNLGGNLDYNYNID 284

Query: 251 KYAERMREDDKKMPSFWAMETTPSEASQPSLTMATSSDS 289
           +Y +               E        P +T +T +DS
Sbjct: 285 EYLK---------------ENPDPIVDTPPITFSTETDS 308

Dictyostelium discoideum (taxid: 44689)
>sp|Q9UU99|YJX4_SCHPO CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC23B6.04c PE=1 SV=1 Back     alignment and function description
>sp|P53860|PDR16_YEAST Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDR16 PE=1 SV=1 Back     alignment and function description
>sp|P53844|PDR17_YEAST Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDR17 PE=1 SV=1 Back     alignment and function description
>sp|Q757H2|CSR1_ASHGO Phosphatidylinositol transfer protein CSR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CSR1 PE=3 SV=2 Back     alignment and function description
>sp|Q10138|YAS2_SCHPO CRAL-TRIO domain-containing protein C3H8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.02 PE=1 SV=1 Back     alignment and function description
>sp|Q7PWB1|RETM_ANOGA Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4 Back     alignment and function description
>sp|Q9VMD6|RETM_DROME Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2 Back     alignment and function description
>sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1 Back     alignment and function description
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
359492838361 PREDICTED: random slug protein 5 [Vitis 1.0 0.933 0.686 1e-140
224066923352 predicted protein [Populus trichocarpa] 0.976 0.934 0.730 1e-138
255545658349 transporter, putative [Ricinus communis] 0.949 0.916 0.741 1e-138
356548200333 PREDICTED: random slug protein 5-like [G 0.988 1.0 0.700 1e-135
356552864332 PREDICTED: random slug protein 5-like [G 0.985 1.0 0.694 1e-134
357489429332 Clavesin [Medicago truncatula] gi|355516 0.985 1.0 0.658 1e-128
217073029332 unknown [Medicago truncatula] gi|3885182 0.979 0.993 0.654 1e-126
449465615315 PREDICTED: random slug protein 5-like [C 0.899 0.961 0.652 1e-115
297813321310 SEC14 cytosolic factor family protein [A 0.890 0.967 0.646 1e-112
297850668316 SEC14 cytosolic factor family protein [A 0.851 0.908 0.666 1e-111
>gi|359492838|ref|XP_002284219.2| PREDICTED: random slug protein 5 [Vitis vinifera] gi|302141931|emb|CBI19134.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/361 (68%), Positives = 283/361 (78%), Gaps = 24/361 (6%)

Query: 1   MSADANKSTTNGYEKPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNV 60
           MS    KS +NGYEKP  S+EQQ KINEVRRL+G L  RLSIYCSDASIAR+L A+NWNV
Sbjct: 1   MSTGLKKSPSNGYEKPSTSKEQQEKINEVRRLIGPLPDRLSIYCSDASIARYLTARNWNV 60

Query: 61  KKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTK 120
           KKATKMLKETLKWR+EYKPEEIRW++IA EAETGKIYR NY+DK+GR VLVM+PSCQN+K
Sbjct: 61  KKATKMLKETLKWRSEYKPEEIRWEDIAQEAETGKIYRANYIDKHGRTVLVMKPSCQNSK 120

Query: 121 STKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPER 180
           STKGQI+YLVYCMENAILNLPP+QEQMVW+IDFQGFNLS+ISVK+TRETAHVLQD YPER
Sbjct: 121 STKGQIKYLVYCMENAILNLPPNQEQMVWMIDFQGFNLSNISVKLTRETAHVLQDRYPER 180

Query: 181 LGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFG 240
           LGLAILYNPPKFFEPFWTVVKPFLE KT  KVKFVYSDD+N ++IMEDLFDMD+LESAFG
Sbjct: 181 LGLAILYNPPKFFEPFWTVVKPFLEPKTCKKVKFVYSDDLNAKKIMEDLFDMDKLESAFG 240

Query: 241 GNDRVGFNINKYAERMREDDKKMPSFWAMETTPSEAS-QPSLT---------MATSSDSP 290
           GND VGFNINKY+E MREDDKKMPSFW  ++ PS A+ QP+L          + + SD+ 
Sbjct: 241 GNDTVGFNINKYSESMREDDKKMPSFWTKDSHPSGAALQPALANDPTLTPINLQSDSDAS 300

Query: 291 --------------NLNSDSDTSDHEKNDTSSQRGMETEAVSSDEKGLTIDGSKNIVGEV 336
                         NL SDSD SD E+ + S   G+ +     D   L  D S+N    +
Sbjct: 301 DKERAENPPSLTHINLQSDSDASDKERAENSPSHGVNSGEGPLDNNVLVSDESRNGAVGI 360

Query: 337 H 337
           H
Sbjct: 361 H 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066923|ref|XP_002302281.1| predicted protein [Populus trichocarpa] gi|222844007|gb|EEE81554.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255545658|ref|XP_002513889.1| transporter, putative [Ricinus communis] gi|223546975|gb|EEF48472.1| transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356548200|ref|XP_003542491.1| PREDICTED: random slug protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356552864|ref|XP_003544782.1| PREDICTED: random slug protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|357489429|ref|XP_003615002.1| Clavesin [Medicago truncatula] gi|355516337|gb|AES97960.1| Clavesin [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073029|gb|ACJ84874.1| unknown [Medicago truncatula] gi|388518233|gb|AFK47178.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449465615|ref|XP_004150523.1| PREDICTED: random slug protein 5-like [Cucumis sativus] gi|449522209|ref|XP_004168120.1| PREDICTED: random slug protein 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297813321|ref|XP_002874544.1| SEC14 cytosolic factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297320381|gb|EFH50803.1| SEC14 cytosolic factor family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297850668|ref|XP_002893215.1| SEC14 cytosolic factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297339057|gb|EFH69474.1| SEC14 cytosolic factor family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2015066314 AT1G22180 "AT1G22180" [Arabido 0.810 0.869 0.701 3.4e-100
TAIR|locus:2138606301 AT4G08690 "AT4G08690" [Arabido 0.750 0.840 0.671 4.2e-95
TAIR|locus:2025202296 AT1G75170 "AT1G75170" [Arabido 0.777 0.885 0.475 5.6e-68
TAIR|locus:2115320294 AT4G36640 [Arabidopsis thalian 0.771 0.884 0.448 4.2e-63
DICTYBASE|DDB_G0269182364 rsc5 "cellular retinaldehyde-b 0.691 0.640 0.304 2e-31
DICTYBASE|DDB_G0293606351 DDB_G0293606 "cellular retinal 0.572 0.549 0.356 3e-30
ASPGD|ASPL0000000837414 AN6853 [Emericella nidulans (t 0.489 0.398 0.401 1.2e-28
UNIPROTKB|G4NEY9403 MGG_00707 "CRAL/TRIO domain-co 0.531 0.444 0.378 1.5e-28
POMBASE|SPCC23B6.04c1008 SPCC23B6.04c "sec14 cytosolic 0.596 0.199 0.379 2.3e-26
CGD|CAL0001086369 PDR16 [Candida albicans (taxid 0.489 0.447 0.353 4.8e-23
TAIR|locus:2015066 AT1G22180 "AT1G22180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 195/278 (70%), Positives = 222/278 (79%)

Query:     1 MSADANKSTTNGYEKPLPSEEQQRKINEVXXXXXXXXXXXXIYCSDASIARHLRAQNWNV 60
             M++D+NKS++NG+EK L  EE   KINEV             +CSDA+I R+L A+N +V
Sbjct:     1 MNSDSNKSSSNGFEKSLTPEEYLNKINEVRTLLGPLTEKSSEFCSDAAITRYLAARNGHV 60

Query:    61 KKATKMLKETLKWRAEYKPEEIRWDEIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTK 120
             KKATKMLKETLKWRA+YKPEEIRW+EIA EAETGKIYR N  DKYGR VLVMRPSCQNTK
Sbjct:    61 KKATKMLKETLKWRAQYKPEEIRWEEIAREAETGKIYRANCTDKYGRTVLVMRPSCQNTK 120

Query:   121 STKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPER 180
             S KGQIR LVYCMENAILNLP +QEQMVWLIDF GFN+SHIS+KV+RETAHVLQ+HYPER
Sbjct:   121 SYKGQIRILVYCMENAILNLPDNQEQMVWLIDFHGFNMSHISLKVSRETAHVLQEHYPER 180

Query:   181 LGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFG 240
             LGLAI+YNPPK FE F+ +VKPFLE KT NKVKFVYSDD  + +++EDLFDM+QLE AFG
Sbjct:   181 LGLAIVYNPPKIFESFYKMVKPFLEPKTSNKVKFVYSDDNLSNKLLEDLFDMEQLEVAFG 240

Query:   241 G-NDRVGFNINKYAERMREDDKKMPSFWAMETTPSEAS 277
             G N   GFN  KYAERMREDD K   F+   TT S  S
Sbjct:   241 GKNSDAGFNFEKYAERMREDDLK---FYG-NTTVSSTS 274
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0031348 "negative regulation of defense response" evidence=RCA
TAIR|locus:2138606 AT4G08690 "AT4G08690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025202 AT1G75170 "AT1G75170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115320 AT4G36640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269182 rsc5 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293606 DDB_G0293606 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000000837 AN6853 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NEY9 MGG_00707 "CRAL/TRIO domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPCC23B6.04c SPCC23B6.04c "sec14 cytosolic factor family (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0001086 PDR16 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
smart00516158 smart00516, SEC14, Domain in homologues of a S 6e-44
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 2e-39
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 6e-35
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 3e-09
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 2e-08
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 2e-05
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score =  148 bits (375), Expect = 6e-44
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 90  EAETGKIYRLNY--VDKYGRAVLVMRPS--CQNTKSTKGQIRYLVYCMENAILN--LPPH 143
           E E  K Y       DK GR VL+ R       + + +  +RYLVY +E  +        
Sbjct: 1   ELELLKAYIPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGG 60

Query: 144 QEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPF 203
            E    + D +G ++S+  + V R+   +LQDHYPERLG   + NPP FF   W ++KPF
Sbjct: 61  IEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPF 120

Query: 204 LELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGND 243
           L+ KT+ K++FV +D       + +  D +QL    GG  
Sbjct: 121 LDEKTREKIRFVGNDSKEE---LLEYIDKEQLPEELGGTL 157

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.96
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.94
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.61
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.91
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.6
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 87.8
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 85.93
PF0697260 DUF1296: Protein of unknown function (DUF1296); In 83.59
smart0054643 CUE Domain that may be involved in binding ubiquit 80.39
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-49  Score=362.68  Aligned_cols=244  Identities=52%  Similarity=0.843  Sum_probs=226.2

Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCC-ccchhhHHHHhcCceEe
Q 019670           20 EEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEE-IRWDEIANEAETGKIYR   98 (337)
Q Consensus        20 e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~~~~d~-i~~~~v~~~~~~~~~~~   98 (337)
                      ++..+.+.+++..++++......+|+|.+++|||||++||+++|.+||.++|.||+.+++.. +.++++..++++|++|.
T Consensus        23 ~~~~~k~~~~~~~~~pl~~~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi  102 (324)
T KOG1470|consen   23 EESLDKINSVKKLLGPLTEKESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYI  102 (324)
T ss_pred             HHHHHHHHHHHHhhcchhhhhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEE
Confidence            33336889999999888777778899999999999999999999999999999999999998 88888999999999999


Q ss_pred             ccccCCCCCeEEEE--ccCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhh
Q 019670           99 LNYVDKYGRAVLVM--RPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDH  176 (337)
Q Consensus        99 ~~~~Dk~GrpV~i~--r~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~v~IiDl~g~s~~~~~~~~~k~~~~~lq~~  176 (337)
                      +| +|++||||+|+  ++++.+..+.+++.|+++|+||.++..++.+++++++|||++|+++++++++..+.++.++|+|
T Consensus       103 ~G-~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~h  181 (324)
T KOG1470|consen  103 LG-HDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDH  181 (324)
T ss_pred             ec-ccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHh
Confidence            98 89999999999  6677788899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccceEEEEcCCcchHHHHHHhcccCCHhhhcceEEEcCCCcchHHHHhccCCcccchhhcCCCCCCCCChHHHHHHh
Q 019670          177 YPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKYAERM  256 (337)
Q Consensus       177 YPerl~~i~ivN~P~~~~~~~~lvkpfL~~kt~~KI~~~~~~~~~~~~~L~~~i~~~~LP~e~GG~~~~~~d~~~~~~~~  256 (337)
                      |||||+..+++|+||+|..+|+++||||+++|+.||+|+.+.     ..|.++||+++||..|||+....|.++++|..|
T Consensus       182 YPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~-----~~l~~~~d~~~l~s~~GG~~~~~y~~e~~~~~~  256 (324)
T KOG1470|consen  182 YPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK-----DDLSEYFDESQLPSLFGGKLLFEYTHEEYWPQM  256 (324)
T ss_pred             ChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh-----hHHHhhCCccccchhhCCCcccccCCcchhhhh
Confidence            999999999999999999999999999999999999999764     449999999999999999999999999999999


Q ss_pred             hhcCCCccccccc
Q 019670          257 REDDKKMPSFWAM  269 (337)
Q Consensus       257 ~~~~~~~~~~~~~  269 (337)
                      .+++...+..|..
T Consensus       257 ~~~~~~~~~~~~~  269 (324)
T KOG1470|consen  257 KEDDSSLRLEYEA  269 (324)
T ss_pred             hhhHHHHHHhHHH
Confidence            9987765444443

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
4fmm_A360 Dimeric Sec14 Family Homolog 3 From Saccharomyces C 3e-23
3hy5_A316 Crystal Structure Of Cralbp Length = 316 4e-11
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 4e-10
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 5e-10
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 7e-10
3hx3_A316 Crystal Structure Of Cralbp Mutant R234w Length = 3 6e-09
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 2e-08
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 4e-08
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 4e-05
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 4e-05
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 5e-04
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 43  YCSDASIARHLRAQNWNVKKATKMLKETLKWRAEY--------KPEEIRWDEIANEAETG 94
           + +     R+LRA  W +K     +  TL WR E+          ++I  D +A E E+G
Sbjct: 84  WLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESG 143
Query: 95  KIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQ 154
           K   L Y +   R +L ++P  QNTK++  Q+++LV+ +E  I  +P  Q+ +  LIDF+
Sbjct: 144 KQVILGYEND-ARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFK 202
Query: 155 GF--------NLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLEL 206
            +        N     + V +E  H+LQ HYPERLG A+L N P     F  ++ PF++ 
Sbjct: 203 DYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDP 262
Query: 207 KTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKY 252
            T+ K+ F   D+   + + +     ++L+S +GG+ +  +N + Y
Sbjct: 263 LTREKLVF---DEPFVKYVPK-----NELDSLYGGDLKFKYNHDVY 300
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 4e-71
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 1e-70
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 2e-49
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 4e-47
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 8e-47
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  222 bits (567), Expect = 4e-71
 Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 25/260 (9%)

Query: 8   STTNGYEKPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKML 67
               G    L    Q++ + E+R+LL            D+++ R LRA+ ++V+ A +M 
Sbjct: 17  DALPGTPGNL-DSAQEKALAELRKLLE--DAGFIERLDDSTLLRFLRARKFDVQLAKEMF 73

Query: 68  KETLKWRAEYKPEEIRWDEIANEAETGKIYRLNY---VDKYGRAVLVMRPSCQNTK---- 120
           +   KWR +Y  + I  D   +E      +   Y    DK GR V        N      
Sbjct: 74  ENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNK 133

Query: 121 --STKGQIRYLVYCMENAILNLPPHQ--------EQMVWLIDFQGFNLSHI--SVKVTRE 168
             S +  ++ LV+  E+ +    P          E    ++D +G ++S     +   RE
Sbjct: 134 VTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVRE 193

Query: 169 TAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMED 228
            +++ Q++YPER+G   + N P  F   + + KPFL+  T +K+  + S        +  
Sbjct: 194 ASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKE---LLK 250

Query: 229 LFDMDQLESAFGGNDRVGFN 248
               + L   FGG   V  +
Sbjct: 251 QIPAENLPVKFGGKSEVDES 270
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.27
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.04
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 86.96
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 86.85
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 85.86
1ufz_A83 Hypothetical protein BAB28515; HBS1-like domain, s 84.86
2dhy_A67 CUE domain-containing protein 1; structural genomi 84.39
2di0_A71 Activating signal cointegrator 1 complex subunit 2 83.43
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 81.36
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
Probab=100.00  E-value=7.8e-50  Score=385.82  Aligned_cols=280  Identities=16%  Similarity=0.194  Sum_probs=233.4

Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhccc-CCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCccchhhHH
Q 019670           11 NGYEKPLPSEEQQRKINEVRRLLGLLS-GRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIAN   89 (337)
Q Consensus        11 ~~~~~~lt~e~~~~~i~~lr~~l~~~~-~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~~~~d~i~~~~v~~   89 (337)
                      .|+.++|+ ++++++|++||+||.+.+ +++  ..+|.+|+|||||++||+++|.++|+++++||++++++.+......+
T Consensus         2 ~g~~~~l~-~~q~~~l~~lr~~l~~~~~~l~--~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~   78 (403)
T 1olm_A            2 SGRVGDLS-PRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPE   78 (403)
T ss_dssp             CSBTTBCC-HHHHHHHHHHHHHHGGGGGGSS--CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCH
T ss_pred             CCCccCCC-HHHHHHHHHHHHHHHhhccCCC--CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHH
Confidence            47889999 889999999999999874 333  48999999999999999999999999999999999887764311111


Q ss_pred             HHhc-CceEeccccCCCCCeEEEEccCCCCC------CChHHHHHHHHHHHHHHHHhCCC-------CcccEEEEEeCCC
Q 019670           90 EAET-GKIYRLNYVDKYGRAVLVMRPSCQNT------KSTKGQIRYLVYCMENAILNLPP-------HQEQMVWLIDFQG  155 (337)
Q Consensus        90 ~~~~-~~~~~~~~~Dk~GrpV~i~r~~~~~~------~~~~~~~r~~~~~~E~~~~~~~~-------~~~~~v~IiDl~g  155 (337)
                      .+.. ...+. +|+|++||||++++++++++      .+.++++|+.++++|.+++.+..       .+.|+++|+|++|
T Consensus        79 ~~~~~~~~~~-~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g  157 (403)
T 1olm_A           79 VIQQYLSGGM-CGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEG  157 (403)
T ss_dssp             HHHHHCCBEE-EEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred             HHHHhCCcee-eccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCC
Confidence            1111 11222 46899999999999999875      37899999999999999886542       4689999999999


Q ss_pred             CCCCCCC---HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhcccCCHhhhcceEEEcCCCcchHHHHhccCCc
Q 019670          156 FNLSHIS---VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDM  232 (337)
Q Consensus       156 ~s~~~~~---~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvkpfL~~kt~~KI~~~~~~~~~~~~~L~~~i~~  232 (337)
                      ++++|++   ++.++.++.++|++||+||+++||||+|++|.++|+++||||+++|++||+|++++   +.+.|.++||+
T Consensus       158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~---~~~~L~~~I~~  234 (403)
T 1olm_A          158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGAN---WKEVLLKHISP  234 (403)
T ss_dssp             CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTT---HHHHHTTTSCG
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChh---HHHHHHhhcCh
Confidence            9999985   77899999999999999999999999999999999999999999999999999763   67899999999


Q ss_pred             ccchhhcCCCCCCCCChHHHHHHhhhcCCCcccccccCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 019670          233 DQLESAFGGNDRVGFNINKYAERMREDDKKMPSFWAMETTPSEASQPSLTMATSSDSPNLNSDSDTS  299 (337)
Q Consensus       233 ~~LP~e~GG~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (337)
                      ++||++|||++++......|...+..++.+|.+||..+.....  -...++|++|+...+++.++++
T Consensus       235 ~~LP~~yGG~~~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~--~~~~~~V~~g~~~~v~~~v~~~  299 (403)
T 1olm_A          235 DQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQ--YEHSVQISRGSSHQVEYEILFP  299 (403)
T ss_dssp             GGSBGGGTSSBCCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCC--CSEEEEECTTCEEEEEEEECST
T ss_pred             hhCchhhCCCcCCCCCCcccccccccCCCCCcccccCCCcccc--cceEEEEcCCCEEEEEEEEcCC
Confidence            9999999999998655555667788899999999987762211  1122568999999988888743
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1 Back     alignment and structure
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 8e-31
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 7e-30
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 1e-26
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 2e-14
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 1e-13
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 2e-09
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 8e-31
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 19/185 (10%)

Query: 99  LNYVDKYGRAVLVMRPSCQNTK------STKGQIRYLVYCMENAILNLPP-------HQE 145
           +   D  G  V        + K      S +  +R  +   E  +              E
Sbjct: 13  MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVE 72

Query: 146 QMVWLIDFQGF---NLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKP 202
            +  + D +G    +L   +V+   E   + +++YPE L    +   PK F   + ++KP
Sbjct: 73  TITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKP 132

Query: 203 FLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKYAERMREDDKK 262
           FL   T+ K+  + ++       +      DQ+   +GG         K   ++      
Sbjct: 133 FLSEDTRKKIMVLGANWKEV---LLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDI 189

Query: 263 MPSFW 267
              ++
Sbjct: 190 PRKYY 194
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 99.97
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.63
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.53
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.31
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 86.28
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 86.18
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 82.7
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 82.41
d1ufza_83 HBS1-like protein {Mouse (Mus musculus) [TaxId: 10 81.19
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-36  Score=260.15  Aligned_cols=169  Identities=19%  Similarity=0.259  Sum_probs=152.9

Q ss_pred             cccCCCCCeEEEEccCCCCCC------ChHHHHHHHHHHHHHHHHhC-------CCCcccEEEEEeCCCCCCCCCC---H
Q 019670          100 NYVDKYGRAVLVMRPSCQNTK------STKGQIRYLVYCMENAILNL-------PPHQEQMVWLIDFQGFNLSHIS---V  163 (337)
Q Consensus       100 ~~~Dk~GrpV~i~r~~~~~~~------~~~~~~r~~~~~~E~~~~~~-------~~~~~~~v~IiDl~g~s~~~~~---~  163 (337)
                      +|+|++||||+++++|++++.      +.++++++.++.+|.+++.+       ..+++++++|+|++|+++++++   +
T Consensus        14 ~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~~~~~~~   93 (199)
T d1olma3          14 CGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAV   93 (199)
T ss_dssp             EEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHH
T ss_pred             ccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhhhccccH
Confidence            368999999999999998753      67889999999999887753       2455799999999999999986   7


Q ss_pred             HHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhcccCCHhhhcceEEEcCCCcchHHHHhccCCcccchhhcCCCC
Q 019670          164 KVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGND  243 (337)
Q Consensus       164 ~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvkpfL~~kt~~KI~~~~~~~~~~~~~L~~~i~~~~LP~e~GG~~  243 (337)
                      ++++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|++++   +++.|.++|++++||++|||++
T Consensus        94 ~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~---~~~~L~~~i~~~~lP~~yGGt~  170 (199)
T d1olma3          94 EAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGAN---WKEVLLKHISPDQVPVEYGGTM  170 (199)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTT---HHHHHTTTSCGGGSBGGGTSSB
T ss_pred             HHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCC---CHHHHHHhCCHhhCCHHhCCCC
Confidence            8899999999999999999999999999999999999999999999999999764   5788999999999999999999


Q ss_pred             CCCCChHHHHHHhhhcCCCcccccccCC
Q 019670          244 RVGFNINKYAERMREDDKKMPSFWAMET  271 (337)
Q Consensus       244 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~  271 (337)
                      ++.....+|...+++++.+|++||..++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~  198 (199)
T d1olma3         171 TDPDGNPKCKSKINYGGDIPRKYYVRDQ  198 (199)
T ss_dssp             CCTTCCTTCTTTCBCCCCCCGGGCSCSS
T ss_pred             CCCCCChhhhccCCCCCcCCHHHhhccc
Confidence            9987777888899999999999997654
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure