Citrus Sinensis ID: 019671

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MGNSEKDSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGACCS
ccccccccccEEEEEEEEEEEEEEEcccccccccccccEEcccEEEEccEEEEEEEEEccccccccccEEEEEEEEcccccccEEEEEEEEEccccccccEEEEEEccccccccEEEccccccccccEEEEcccccccccccccEEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHccccccEEEEEccEEEEccccEEccccHHHHHHHccccccccccEEEEEcccHHHHHHHHEEEEEcccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHccccccccccccc
ccccccccccEEEEEEEcEEEEEEEEccEccccccccEEEEcccEEEcccEEEEEEccccccccccccEEEEEEEEccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccHEEEHHHHHccccccccEEEEEEEEEEEEEccccccccEEEcccccHHHHHHHHHHcccccEEEEEEcccEcHHHHHEEHcccHHHHHHHccccccccccEEEEccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHcc
mgnsekdstsksinetvngshqftvkgyslakgmgpgkclssdvftvggydwaiyfypdgknpedgaLYVSVFIALASEGTDVRALFELTLvdqsgkgkhkvhshfdralesgpytlkyrgsmwgykRFFKRTsletsdyikddclliNCTVGvvrnrlegpkqysipvppsdmgqgLKDLLEseigcdivfEVGDETFKAHKLILAARSPVFRAQFyglvgdrnldkvVVKDVEPSIFKAMLLFIytdkfpdvyeitgttsmctTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAatpanlggaccs
mgnsekdstsksinetvngshqFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVdqsgkgkhkvhshfdralesgpytlkyrgsmWGYKRFFKRTSLEtsdyikddcllINCTVGVvrnrlegpkqysipvppsdMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGlvgdrnldkvVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGACCS
MGNSEKDSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEItgttsmctttNMVQHLLAAADLYNVDRlkllcesklceelnaetvattlalaeQHQCPQLKAICLKFAATPANLGGACCS
*********************QFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQY***********GLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGAC**
******D****SINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGACCS
*************NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVD***********HFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGACCS
*******STSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQS******************PYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDV*****TTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLG*****
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MGNSEKDSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGACCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
O22286408 BTB/POZ and MATH domain-c no no 0.970 0.801 0.758 1e-154
Q8L765407 BTB/POZ and MATH domain-c no no 0.934 0.773 0.669 1e-125
Q9M8J9406 BTB/POZ and MATH domain-c no no 0.973 0.807 0.636 1e-122
Q9SRV1465 BTB/POZ and MATH domain-c no no 0.943 0.683 0.600 1e-112
A1L4W5415 BTB/POZ and MATH domain-c no no 0.949 0.771 0.565 1e-106
Q1EBV6410 BTB/POZ and MATH domain-c no no 0.940 0.773 0.585 1e-105
Q9VFP2829 Protein roadkill OS=Droso no no 0.872 0.354 0.321 1e-36
Q5BL35392 Speckle-type POZ protein- yes no 0.857 0.737 0.330 2e-36
A0JMG1392 Speckle-type POZ protein- yes no 0.857 0.737 0.323 3e-36
Q6IQ16392 Speckle-type POZ protein- yes no 0.857 0.737 0.314 8e-36
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1 Back     alignment and function desciption
 Score =  544 bits (1402), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 248/327 (75%), Positives = 291/327 (88%)

Query: 7   DSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDG 66
           DS S S  ETVNGSHQFT++GYSLAKGM PGK + SD+F+VGGYDWAIYFYPDGKNPED 
Sbjct: 13  DSVSTSFIETVNGSHQFTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQ 72

Query: 67  ALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGY 126
           + Y+S+FIALAS+  D+RALFELTL+DQSGKGKHKVHSHFDRALE GPYTLKY+GSMWGY
Sbjct: 73  SSYISLFIALASDSNDIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGY 132

Query: 127 KRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEI 186
           KRFFKR++LETSDY+KDDCL+INCTVGVVR RLEGPKQY I +P S+MGQGLKDLL+SE+
Sbjct: 133 KRFFKRSALETSDYLKDDCLVINCTVGVVRARLEGPKQYGIVLPLSNMGQGLKDLLDSEV 192

Query: 187 GCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFI 246
           GCDI F+VGDET+KAHKLILAARSPVFRAQF+G +G+ N+D++V+ D+EPSIFKAML FI
Sbjct: 193 GCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSFI 252

Query: 247 YTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTL 306
           YTD  P+V+EITG+TS  + TNM+QHLLAAADLY++ RLK+LCE  LCE+L+ + VATTL
Sbjct: 253 YTDVLPNVHEITGSTSASSFTNMIQHLLAAADLYDLARLKILCEVLLCEKLDVDNVATTL 312

Query: 307 ALAEQHQCPQLKAICLKFAATPANLGG 333
           ALAEQHQ  QLKA CL+F A+PANLG 
Sbjct: 313 ALAEQHQFLQLKAFCLEFVASPANLGA 339
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1 Back     alignment and function description
>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana GN=BPM6 PE=1 SV=1 Back     alignment and function description
>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1 Back     alignment and function description
>sp|Q9VFP2|RDX_DROME Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2 Back     alignment and function description
>sp|Q5BL35|SPOLA_DANRE Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1 Back     alignment and function description
>sp|A0JMG1|SPOLB_DANRE Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2 Back     alignment and function description
>sp|Q6IQ16|SPOPL_HUMAN Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
255566466408 Speckle-type POZ protein, putative [Rici 0.982 0.811 0.867 1e-175
224112703408 predicted protein [Populus trichocarpa] 0.973 0.803 0.868 1e-172
225449392406 PREDICTED: BTB/POZ and MATH domain-conta 0.976 0.810 0.835 1e-166
297823865406 hypothetical protein ARALYDRAFT_903228 [ 0.970 0.805 0.770 1e-153
21595740408 unknown [Arabidopsis thaliana] 0.970 0.801 0.761 1e-153
79324787343 BTB/POZ and MATH domain-containing prote 0.979 0.962 0.757 1e-153
18405153408 BTB/POZ and MATH domain-containing prote 0.970 0.801 0.758 1e-152
356569157414 PREDICTED: BTB/POZ and MATH domain-conta 0.988 0.804 0.751 1e-149
356539895415 PREDICTED: BTB/POZ and MATH domain-conta 0.988 0.802 0.754 1e-148
326491541396 predicted protein [Hordeum vulgare subsp 0.973 0.828 0.692 1e-139
>gi|255566466|ref|XP_002524218.1| Speckle-type POZ protein, putative [Ricinus communis] gi|223536495|gb|EEF38142.1| Speckle-type POZ protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 287/331 (86%), Positives = 317/331 (95%)

Query: 3   NSEKDSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKN 62
           +S+K+S S SINETVNGSHQF++KGYSLAKGMG GKC++SD+FTVGGYDWAIYFYPDGKN
Sbjct: 7   DSDKESCSMSINETVNGSHQFSIKGYSLAKGMGAGKCIASDIFTVGGYDWAIYFYPDGKN 66

Query: 63  PEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGS 122
           PED ++YVSVF+ALASEGTDVRALFELTLVDQSG GKHKVHSHFDRALESGPYTLKYRGS
Sbjct: 67  PEDSSMYVSVFVALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRALESGPYTLKYRGS 126

Query: 123 MWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLL 182
           MWGYKRFF+RT+LE SDYIKDDCL++NCTVGVVR RLEGPKQYSI +PPSDMGQGLK+LL
Sbjct: 127 MWGYKRFFRRTTLENSDYIKDDCLIMNCTVGVVRTRLEGPKQYSISLPPSDMGQGLKELL 186

Query: 183 ESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAM 242
           ESE+GCDIVF+VGDETFKAHKLILAARSPVFRAQF+GLVGD NLDKVVV+D++PSIFKAM
Sbjct: 187 ESEVGCDIVFQVGDETFKAHKLILAARSPVFRAQFFGLVGDPNLDKVVVEDIDPSIFKAM 246

Query: 243 LLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETV 302
           LLFIYTDK P+V+EITGTTSMCT+TNMVQHLLAAADLYN+D+LKLLCESKLCEEL+AETV
Sbjct: 247 LLFIYTDKLPNVHEITGTTSMCTSTNMVQHLLAAADLYNLDQLKLLCESKLCEELSAETV 306

Query: 303 ATTLALAEQHQCPQLKAICLKFAATPANLGG 333
           ATTLALAEQHQC QLK +CLKFAA PANLG 
Sbjct: 307 ATTLALAEQHQCSQLKVVCLKFAANPANLGA 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112703|ref|XP_002316266.1| predicted protein [Populus trichocarpa] gi|222865306|gb|EEF02437.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225449392|ref|XP_002282536.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297823865|ref|XP_002879815.1| hypothetical protein ARALYDRAFT_903228 [Arabidopsis lyrata subsp. lyrata] gi|297325654|gb|EFH56074.1| hypothetical protein ARALYDRAFT_903228 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21595740|gb|AAM66127.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79324787|ref|NP_001031516.1| BTB/POZ and MATH domain-containing protein [Arabidopsis thaliana] gi|222422863|dbj|BAH19418.1| AT2G39760 [Arabidopsis thaliana] gi|330254626|gb|AEC09720.1| BTB/POZ and MATH domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18405153|ref|NP_030522.1| BTB/POZ and MATH domain-containing protein [Arabidopsis thaliana] gi|75277254|sp|O22286.1|BPM3_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 3; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 3; Short=AtBPM3 gi|2642158|gb|AAB87125.1| expressed protein [Arabidopsis thaliana] gi|22135872|gb|AAM91518.1| unknown protein [Arabidopsis thaliana] gi|23197672|gb|AAN15363.1| unknown protein [Arabidopsis thaliana] gi|330254625|gb|AEC09719.1| BTB/POZ and MATH domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356569157|ref|XP_003552772.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356539895|ref|XP_003538428.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|326491541|dbj|BAJ94248.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326508174|dbj|BAJ99354.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2063953408 BPM3 [Arabidopsis thaliana (ta 0.967 0.799 0.690 1.3e-123
TAIR|locus:2082445406 BPM2 "BTB-POZ and MATH domain 0.958 0.795 0.578 7.4e-98
TAIR|locus:2079384465 BPM4 "BTB-POZ and MATH domain 0.955 0.692 0.556 3.4e-93
TAIR|locus:2147167410 BPM5 "BTB-POZ and MATH domain 0.943 0.775 0.529 9.6e-89
TAIR|locus:2080188415 BPM6 "BTB-POZ and MATH domain 0.952 0.773 0.521 6.7e-88
ZFIN|ZDB-GENE-050320-3394 spopla "speckle-type POZ prote 0.860 0.736 0.297 2.5e-26
ZFIN|ZDB-GENE-061103-277392 spoplb "speckle-type POZ prote 0.854 0.734 0.294 4e-26
UNIPROTKB|E1C049374 SPOP "Uncharacterized protein" 0.735 0.663 0.311 1.8e-25
UNIPROTKB|Q0VCW1374 SPOP "Speckle-type POZ protein 0.735 0.663 0.311 1.8e-25
UNIPROTKB|E2RS90374 SPOP "Uncharacterized protein" 0.735 0.663 0.311 1.8e-25
TAIR|locus:2063953 BPM3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 225/326 (69%), Positives = 262/326 (80%)

Query:     7 DSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDG 66
             DS S S  ETVNGSHQFT++GYSLAKGM PGK + SD+F+VGGYDWAIYFYPDGKNPED 
Sbjct:    13 DSVSTSFIETVNGSHQFTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQ 72

Query:    67 ALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGY 126
             + Y+S+FIALAS+  D+RALFELTL+DQSGKGKHKVHSHFDRALE GPYTLKY+GSMWGY
Sbjct:    73 SSYISLFIALASDSNDIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGY 132

Query:   127 KRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEI 186
             KRFFKR++LETSDY+KDDCL+INCTVGVVR RLEGPKQY I +P S+MGQGLKDLL+SE+
Sbjct:   133 KRFFKRSALETSDYLKDDCLVINCTVGVVRARLEGPKQYGIVLPLSNMGQGLKDLLDSEV 192

Query:   187 GCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFI 246
             GCDI F+VGDET+KAHKLILAARSPVFRAQF+G +G+ N+D++V+ D+EPSIFKAML FI
Sbjct:   193 GCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSFI 252

Query:   247 YTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDRXXXXXXXXXXXXXXXXXXXXXX 306
             YTD  P+V+EI          NM+QHLLAAADLY++ R                      
Sbjct:   253 YTDVLPNVHEITGSTSASSFTNMIQHLLAAADLYDLARLKILCEVLLCEKLDVDNVATTL 312

Query:   307 XXXXQHQCPQLKAICLKFAATPANLG 332
                 QHQ  QLKA CL+F A+PANLG
Sbjct:   313 ALAEQHQFLQLKAFCLEFVASPANLG 338
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0042802 "identical protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=IEP
GO:0071472 "cellular response to salt stress" evidence=IEP
GO:0031396 "regulation of protein ubiquitination" evidence=IMP
TAIR|locus:2082445 BPM2 "BTB-POZ and MATH domain 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079384 BPM4 "BTB-POZ and MATH domain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147167 BPM5 "BTB-POZ and MATH domain 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080188 BPM6 "BTB-POZ and MATH domain 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-3 spopla "speckle-type POZ protein-like a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061103-277 spoplb "speckle-type POZ protein-like b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C049 SPOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCW1 SPOP "Speckle-type POZ protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RS90 SPOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22286BPM3_ARATHNo assigned EC number0.75840.97030.8014nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 3e-29
pfam00651101 pfam00651, BTB, BTB/POZ domain 9e-27
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 3e-22
smart0006195 smart00061, MATH, meprin and TRAF homology 3e-09
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 4e-09
pfam00917116 pfam00917, MATH, MATH domain 1e-07
cd03774139 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP 2e-06
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 7e-05
cd00270149 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept 7e-04
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information 
 Score =  108 bits (272), Expect = 3e-29
 Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 19/139 (13%)

Query: 19  GSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS 78
           G H + +  +S  +G    + + S  F VGGY W I  YP+G        Y+S+++ L  
Sbjct: 1   GKHTWKIVNFSELEG----ESIYSPPFEVGGYKWRIRIYPNGDGESGD--YLSLYLELDK 54

Query: 79  EGTD-----VRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRT 133
             +D     VRA F L LV+Q+G GK    S               +GS WG+ +F    
Sbjct: 55  GESDLEKWSVRAEFTLKLVNQNG-GKSLSKSFT-------HVFFSEKGSGWGFPKFISWD 106

Query: 134 SLETSDYIKDDCLLINCTV 152
            LE S Y+ DD L I   V
Sbjct: 107 DLEDSYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information
>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
PHA02713 557 hypothetical protein; Provisional 99.94
PHA02790 480 Kelch-like protein; Provisional 99.93
PHA03098 534 kelch-like protein; Provisional 99.93
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.93
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.92
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.92
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.92
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.91
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.91
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.91
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.91
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.9
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.9
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.9
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.89
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.88
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.84
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.83
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.83
KOG4591280 consensus Uncharacterized conserved protein, conta 99.82
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.81
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.75
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.73
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.73
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.72
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.71
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.64
smart0006195 MATH meprin and TRAF homology. 99.58
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 99.5
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.12
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.02
KOG2838401 consensus Uncharacterized conserved protein, conta 98.72
KOG0511516 consensus Ankyrin repeat protein [General function 98.37
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.29
KOG2838 401 consensus Uncharacterized conserved protein, conta 98.29
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.99
KOG3473112 consensus RNA polymerase II transcription elongati 97.36
KOG0511 516 consensus Ankyrin repeat protein [General function 96.96
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 96.89
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.88
KOG2714 465 consensus SETA binding protein SB1 and related pro 96.79
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.73
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 96.62
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.38
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 96.19
KOG0297391 consensus TNF receptor-associated factor [Signal t 95.43
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 95.25
KOG1778 319 consensus CREB binding protein/P300 and related TA 93.98
KOG2715210 consensus Uncharacterized conserved protein, conta 92.02
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 91.56
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 89.14
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.94  E-value=1e-26  Score=222.43  Aligned_cols=151  Identities=23%  Similarity=0.318  Sum_probs=140.6

Q ss_pred             CCchhhhHHHhhhcCCCCCeEEEeC-CeEEeeehHHHHhcCHHHHHHhcccccCCC-CCcEEecCCCHHHHHHHhhhhcc
Q 019671          171 PSDMGQGLKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGLVGDRN-LDKVVVKDVEPSIFKAMLLFIYT  248 (337)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~Dv~~~v~-~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~-~~~i~l~~~~~~~f~~~L~~iY~  248 (337)
                      ...+++.|++++.++.++||+|.|+ |++|+|||.|||++|+||++||.++|+|.. ..+|.|.++++++|+.+|+|+||
T Consensus         9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt   88 (557)
T PHA02713          9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYN   88 (557)
T ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence            4567899999999999999999997 899999999999999999999999999864 78899999999999999999999


Q ss_pred             CCCCCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCc
Q 019671          249 DKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATP  328 (337)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~  328 (337)
                      +.+  ..            +++.+||.+|++|+++.|++.|+++|.+.++.+||+.++.+|..+.+..|++.|.+||+  
T Consensus        89 ~~i--~~------------~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~--  152 (557)
T PHA02713         89 RHI--SS------------MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM--  152 (557)
T ss_pred             CCC--CH------------HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH--
Confidence            974  32            79999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CChhhhhcC
Q 019671          329 ANLGGACCS  337 (337)
Q Consensus       329 ~~~~~i~~s  337 (337)
                      +||.++.++
T Consensus       153 ~~f~~v~~~  161 (557)
T PHA02713        153 SNIPTLITT  161 (557)
T ss_pred             HHHHHHhCC
Confidence            999988764

>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 2e-26
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 1e-14
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 1e-11
2cr2_A159 Solution Structure Of N-Terminal Domain Of Speckle- 1e-05
3ivb_A145 Structures Of Spop-Substrate Complexes: Insights In 2e-05
3hql_A145 Structures Of Spop-Substrate Complexes: Insights In 3e-05
2vkp_A109 Crystal Structure Of Btb Domain From Btbd6 Length = 2e-04
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 29/279 (10%)
Query: 14  NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYV 70
           ++ V  S+ +T+  +S  +    G+ + S  F+ G  D   W +   P G + E      
Sbjct: 2   SKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 60
Query: 71  SVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130
              + ++   ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F 
Sbjct: 61  LYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFI 112
Query: 131 KRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESE 185
           +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+ 
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENS 172
Query: 186 IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLF 245
              D    V  + F+AHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ F
Sbjct: 173 RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 232
Query: 246 IYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDR 284
           IYT K P++              M   LLAAAD Y ++R
Sbjct: 233 IYTGKAPNL------------DKMADDLLAAADKYALER 259
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type Poz Protein Length = 159 Back     alignment and structure
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath- Macroh2asbcpep1 Length = 145 Back     alignment and structure
>pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:spopmathx-Pucsbc1_pep2 Length = 145 Back     alignment and structure
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6 Length = 109 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-120
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 3e-76
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 2e-75
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 2e-39
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 1e-38
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 3e-38
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 4e-32
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 2e-31
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 8e-31
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 8e-31
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 4e-30
1d00_A168 Tumor necrosis factor receptor associated protein 1e-28
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 2e-28
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 6e-23
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 3e-22
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 8e-22
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 2e-21
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-21
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-21
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 4e-21
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 8e-21
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-20
3b84_A119 Zinc finger and BTB domain-containing protein 48; 3e-20
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 3e-19
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 3e-19
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 7e-19
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 3e-18
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 1e-06
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
 Score =  346 bits (890), Expect = e-120
 Identities = 101/321 (31%), Positives = 156/321 (48%), Gaps = 31/321 (9%)

Query: 15  ETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYVS 71
           + V  S+ +T+  +S  +    G+ + S  F+ G  D   W +   P G + E    Y+S
Sbjct: 3   KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLS 60

Query: 72  VFIALASE-GTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130
           +++ L S   ++VRA F+ ++++  G+    + S               +G  WG+K+F 
Sbjct: 61  LYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQ--------RAYRFVQGKDWGFKKFI 112

Query: 131 KRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESE 185
           +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+ 
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENS 172

Query: 186 IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLF 245
              D    V  + F+AHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ F
Sbjct: 173 RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 232

Query: 246 IYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATT 305
           IYT K P+               M   LLAAAD Y ++RLK++CE  LC  L+ E  A  
Sbjct: 233 IYTGKAPN------------LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI 280

Query: 306 LALAEQHQCPQLKAICLKFAA 326
           L LA+ H   QLK   + F  
Sbjct: 281 LILADLHSADQLKTQAVDFIN 301
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 100.0
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.97
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 99.95
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 99.94
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 99.93
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 99.93
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.93
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.93
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 99.92
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.92
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 99.92
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.92
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.92
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.92
2vpk_A116 Myoneurin; transcription regulation, transcription 99.91
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.91
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.91
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 99.91
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 99.91
1d00_A168 Tumor necrosis factor receptor associated protein 99.91
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 99.9
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.9
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.89
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.89
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.89
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.87
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.86
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.82
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.49
4gwm_A592 Meprin A subunit beta; mulidomain structure, hydro 99.36
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.24
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.16
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.01
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.59
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.56
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.56
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.47
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.1
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.64
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 97.24
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.35
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 96.07
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.79
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 95.27
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 95.07
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 88.89
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 87.23
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 86.56
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 84.86
3b84_A119 Zinc finger and BTB domain-containing protein 48; 84.48
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 83.87
2vpk_A116 Myoneurin; transcription regulation, transcription 83.75
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 82.3
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 81.47
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=2.3e-60  Score=425.46  Aligned_cols=300  Identities=33%  Similarity=0.583  Sum_probs=252.7

Q ss_pred             ccceeeEEEEEEcccccccCCCCCCeeeeccceecCe---eEEEEEEcCCCCCCCCCceEEEEEEec-CCCceEEEEEEE
Q 019671           14 NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGY---DWAIYFYPDGKNPEDGALYVSVFIALA-SEGTDVRALFEL   89 (337)
Q Consensus        14 ~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lsl~L~~~-~~~~~~~~~~~~   89 (337)
                      +++.+++|+|+|+||+.++ .+.|+.++||+|.+||+   +|+|.+||+|++.++++ |+|+||.|. ...|++.|+|++
T Consensus         2 s~~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~-~lslyL~~~~~~~~~v~a~~~~   79 (312)
T 3hqi_A            2 SKVVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLLVSCPKSEVRAKFKF   79 (312)
T ss_dssp             EEEEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTT-EEEEEEEEEECCC-CEEEEEEE
T ss_pred             CceEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCC-cEEEEEEEcCCCCCcEEEEEEE
Confidence            3578899999999999986 57789999999999995   99999999998776666 999999997 468999999999


Q ss_pred             EEeecCCCCccceecccccccccCcccccccCcccCccceeeccccc--cCCCcCCCeEEEEEecceeccccC---CCCC
Q 019671           90 TLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVRNRLE---GPKQ  164 (337)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~~~~~---~~~~  164 (337)
                      +|+|++|+.......       ...+.|. ++.+|||++|++|++|+  .+||+.||+++|+|+|.+......   ....
T Consensus        80 ~l~~~~~~~~~~~~~-------~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~  151 (312)
T 3hqi_A           80 SILNAKGEETKAMES-------QRAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTM  151 (312)
T ss_dssp             EEECTTSCEEEEEEC-------SSCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCC
T ss_pred             EEEeCCCCccccccc-------CCceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccc
Confidence            999999875433211       1234554 34689999999999995  568999999999999999964322   2223


Q ss_pred             ccccCCCCchhhhHHHhhhcCCCCCeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhh
Q 019671          165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLL  244 (337)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~  244 (337)
                      ..+..|++.+.+++.+++.++.++||+|.|+|++|+|||.|||+|||||++||.+++.|+...+|.++++++++|+.+|+
T Consensus       152 ~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~  231 (312)
T 3hqi_A          152 NMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC  231 (312)
T ss_dssp             SSCCCCCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHH
T ss_pred             cccCCCCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHh
Q 019671          245 FIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKF  324 (337)
Q Consensus       245 ~iY~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~  324 (337)
                      ||||+.++...            +++.+||.+|++|+++.|+..|+++|.+.++.+|+..++.+|++|++..|++.|++|
T Consensus       232 ~iYt~~~~~~~------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~  299 (312)
T 3hqi_A          232 FIYTGKAPNLD------------KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDF  299 (312)
T ss_dssp             HHHHSCCTTHH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcCCCCCChH------------HHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999998765            799999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcCChhhhhcC
Q 019671          325 AATPANLGGACCS  337 (337)
Q Consensus       325 i~~~~~~~~i~~s  337 (337)
                      |+  .|+.++++|
T Consensus       300 i~--~~~~~v~~s  310 (312)
T 3hqi_A          300 IN--YHATDVLET  310 (312)
T ss_dssp             HH--HTC------
T ss_pred             HH--HHHHHHhhC
Confidence            99  999998865
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 2e-27
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 8e-26
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 1e-24
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 1e-24
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 3e-23
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 2e-22
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 15/153 (9%)

Query: 15  ETVNGSHQFTVKGYSLAKGM---GPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALY 69
           +  NG + + +  + +            + S  F  G  GY   +  +      +  A Y
Sbjct: 1   QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANY 60

Query: 70  VSVFIALASEGTD------VRALFELTLVDQSGKGKHKVHSH-FDRALESGPY---TLKY 119
           +S+F+       D       +    LT++DQS     + H    D   E   +   T+  
Sbjct: 61  ISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPR 120

Query: 120 RGSMWGYKRFFKRTSLETSDYIKDDCLLINCTV 152
               +GY  F    +L    +IKDD LL+ C V
Sbjct: 121 NPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEV 153
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.93
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.93
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.92
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.91
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.91
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.91
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.94
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.81
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.32
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.25
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.88
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 95.83
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 95.48
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.19
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 91.17
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 85.85
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 83.05
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.3e-26  Score=177.60  Aligned_cols=136  Identities=26%  Similarity=0.553  Sum_probs=112.3

Q ss_pred             cceeeEEEEEEcccccccCCCCCCeeeeccceecCe---eEEEEEEcCCCCCCCCCceEEEEEEecC-CCceEEEEEEEE
Q 019671           15 ETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGY---DWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFELT   90 (337)
Q Consensus        15 ~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lsl~L~~~~-~~~~~~~~~~~~   90 (337)
                      ++.+.+|.|+|+||+.++. ..|++++||.|.+||+   +|+|.+||+|.+...++ |+|+||.+.+ ..|++.++++|+
T Consensus         1 ~v~~~~~~W~I~nfs~~~~-~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~-~lSv~L~~~~~~~~~v~~~~~~~   78 (146)
T d2cr2a1           1 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLLVSCPKSEVRAKFKFS   78 (146)
T ss_dssp             CEEEEEEEEEEETGGGCCC-CSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSS-BCCEEEECCCCSSSEEEEECEEE
T ss_pred             CeeEEEEEEEECCchHHhh-cCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCC-EEEEEEEeccCCCceEEEEEEEE
Confidence            4678999999999998765 5678999999998875   79999999999877777 9999999884 679999999999


Q ss_pred             EeecCCCCccceecccccccccCcccccccCcccCccceeeccccc--cCCCcCCCeEEEEEecceeccccC
Q 019671           91 LVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVRNRLE  160 (337)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~~~~~  160 (337)
                      |+|+.+++.......        ...+...+.+|||++|+++++|.  .+|||.||+|+|+|+|+|..+...
T Consensus        79 l~n~~~~~~~~~~~~--------~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~~~  142 (146)
T d2cr2a1          79 ILNAKGEETKAMESQ--------RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVN  142 (146)
T ss_dssp             EECTTSCEEEEEECS--------CCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCSCC
T ss_pred             EEcCCCCcccceEec--------ceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCCCC
Confidence            999987755433222        12233456789999999999995  568999999999999999985543
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure